# geneInfo

ensembl_gene_id: PMI02_00001
symbol: EJL35445.1
gene_biotype: protein_coding
description:
  PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PMI02_00052
symbol: EJL35376.1
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain, Alpha amylase, catalytic domain, Carbohydrate-binding module 48 (Isoamylase N-terminal domain).


ensembl_gene_id: PMI02_00064
symbol: EJL35388.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily, Multidrug resistance protein.


ensembl_gene_id: PMI02_00065
symbol: EJL35389.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Response regulator receiver domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, GAF domain, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI02_00072
symbol: EJL35241.1
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase/poly(A) polymerase; PFAM: Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: PMI02_00075
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit, proteobacterial; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: PMI02_00078
symbol: EJL35247.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase family protein; PFAM: Aminotransferase class-V; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_00084
symbol: pckA
gene_biotype: protein_coding
description:
  ATP-dependent phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.


ensembl_gene_id: PMI02_00086
symbol: EJL35255.1
gene_biotype: protein_coding
description:
  PFAM: HAMP domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI02_00087
symbol: EJL35256.1
gene_biotype: protein_coding
description:
  Serine kinase of the HPr protein, regulates carbohydrate metabolism; PFAM: HPr Serine kinase C-terminal domain.


ensembl_gene_id: PMI02_00089
symbol: EJL35258.1
gene_biotype: protein_coding
description:
  PFAM: PTS system fructose IIA component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA component.


ensembl_gene_id: PMI02_00091
symbol: EJL35260.1
gene_biotype: protein_coding
description:
  PFAM: SpoU rRNA Methylase family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: PMI02_00093
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: PMI02_00094
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: PMI02_00095
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: PMI02_00097
symbol: truA
gene_biotype: protein_coding
description:
  Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: PMI02_00101
symbol: EJL35270.1
gene_biotype: protein_coding
description:
  Cobaltochelatase, CobS subunit; PFAM: AAA domain (dynein-related subfamily), Cobaltochelatase CobS subunit N terminal; TIGRFAM: cobaltochelatase, CobS subunit.


ensembl_gene_id: PMI02_00104
symbol: EJL35273.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain; Belongs to the GST superfamily.


ensembl_gene_id: PMI02_00115
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: PMI02_00116
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: PMI02_00117
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: PMI02_00118
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: PMI02_00119
symbol: hppA
gene_biotype: protein_coding
description:
  Vacuolar-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: PMI02_00135
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: PMI02_00137
symbol: EJL35305.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI02_00139
symbol: EJL35307.1
gene_biotype: protein_coding
description:
  ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region.


ensembl_gene_id: PMI02_00140
symbol: EJL35308.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase.


ensembl_gene_id: PMI02_00144
symbol: EJL35312.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_00147
symbol: EJL35315.1
gene_biotype: protein_coding
description:
  Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase; PFAM: Rieske [2Fe-2S] domain.


ensembl_gene_id: PMI02_00148
symbol: EJL35316.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain.


ensembl_gene_id: PMI02_00150
symbol: EJL35318.1
gene_biotype: protein_coding
description:
  PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: PMI02_00151
symbol: EJL35319.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; PFAM: Transketolase, C-terminal domain, Transketolase, pyrimidine binding domain.


ensembl_gene_id: PMI02_00152
symbol: EJL35320.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit; PFAM: Dehydrogenase E1 component.


ensembl_gene_id: PMI02_00154
symbol: EJL35322.1
gene_biotype: protein_coding
description:
  Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase.


ensembl_gene_id: PMI02_00156
symbol: EJL35324.1
gene_biotype: protein_coding
description:
  Hypothetical protein, possibly involved in aromatic compounds catabolism; PFAM: Thioesterase superfamily.


ensembl_gene_id: PMI02_00165
symbol: EJL35333.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI02_00171
symbol: EJL35339.1
gene_biotype: protein_coding
description:
  Membrane carboxypeptidase/penicillin-binding protein; PFAM: Penicillin binding protein transpeptidase domain, Transglycosylase.


ensembl_gene_id: PMI02_00173
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: PMI02_00174
symbol: EJL35342.1
gene_biotype: protein_coding
description:
  Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase, Molydopterin dinucleotide binding domain, Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: PMI02_00176
symbol: EJL35344.1
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: PMI02_00177
symbol: EJL35345.1
gene_biotype: protein_coding
description:
  Hypothetical protein, possibly involved in aromatic compounds catabolism; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.


ensembl_gene_id: PMI02_00180
symbol: EJL35348.1
gene_biotype: protein_coding
description:
  PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing), exosortase A system-associated amidotransferase 1.


ensembl_gene_id: PMI02_00181
symbol: EJL35349.1
gene_biotype: protein_coding
description:
  PFAM: Transmembrane exosortase (Exosortase_EpsH), Protein of unknown function (DUF3485); TIGRFAM: EpsI family protein, exosortase/archaeosortase family protein, exosortase A, exosortase.


ensembl_gene_id: PMI02_00184
symbol: EJL35352.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF3473), Polysaccharide deacetylase; TIGRFAM: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily.


ensembl_gene_id: PMI02_00185
symbol: EJL35353.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized conserved protein (DUF2075); TIGRFAM: putative secretion ATPase, PEP-CTERM locus subfamily.


ensembl_gene_id: PMI02_00188
symbol: EJL35356.1
gene_biotype: protein_coding
description:
  PFAM: Chain length determinant protein; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.


ensembl_gene_id: PMI02_00189
symbol: EJL35357.1
gene_biotype: protein_coding
description:
  PFAM: Polysaccharide biosynthesis/export protein; TIGRFAM: putative polysaccharide export protein, PEP-CTERM sytem-associated.


ensembl_gene_id: PMI02_00190
symbol: EJL35358.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain, Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: pyridoxal-dependent decarboxylase, exosortase A system-associated; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: PMI02_00191
symbol: EJL35359.1
gene_biotype: protein_coding
description:
  PFAM: AMP-binding enzyme; TIGRFAM: amino acid adenylation domain, acyl-CoA ligase (AMP-forming), exosortase A-associated.


ensembl_gene_id: PMI02_00197
symbol: clpS
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: PMI02_00199
symbol: EJL35165.1
gene_biotype: protein_coding
description:
  poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus, alpha/beta hydrolase fold; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I.


ensembl_gene_id: PMI02_00201
symbol: EJL35167.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Transcriptional regulatory protein, C terminal.


ensembl_gene_id: PMI02_00202
symbol: EJL35168.1
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: PMI02_00212
symbol: EJL35177.1
gene_biotype: protein_coding
description:
  Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor.


ensembl_gene_id: PMI02_00214
symbol: EJL35179.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI02_00216
symbol: EJL35181.1
gene_biotype: protein_coding
description:
  Putative acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: PMI02_00225
symbol: EJL35190.1
gene_biotype: protein_coding
description:
  PFAM: Sodium:dicarboxylate symporter family; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: PMI02_00226
symbol: EJL35191.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, Two-component sensor kinase N-terminal.


ensembl_gene_id: PMI02_00232
symbol: EJL35197.1
gene_biotype: protein_coding
description:
  5-dehydro-4-deoxyglucarate dehydratase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.


ensembl_gene_id: PMI02_00233
symbol: EJL35198.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI02_00236
symbol: EJL35201.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor; TIGRFAM: TonB-dependent receptor.


ensembl_gene_id: PMI02_00241
symbol: kduI
gene_biotype: protein_coding
description:
  5-keto 4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.


ensembl_gene_id: PMI02_00246
symbol: EJL35130.1
gene_biotype: protein_coding
description:
  Putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; PFAM: Transglycosylase SLT domain.


ensembl_gene_id: PMI02_00251
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase, BPG-dependent, family 1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: PMI02_00252
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, PurE protein; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: PMI02_00253
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, PurK protein; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: PMI02_00254
symbol: EJL35137.1
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: PMI02_00255
symbol: EJL35138.1
gene_biotype: protein_coding
description:
  PFAM: Riboflavin kinase, FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family.


ensembl_gene_id: PMI02_00256
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: PMI02_00257
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: PMI02_00259
symbol: EJL35142.1
gene_biotype: protein_coding
description:
  CBS domain-containing protein; PFAM: CBS domain, Domain of unknown function DUF21, Transporter associated domain.


ensembl_gene_id: PMI02_00260
symbol: EJL35143.1
gene_biotype: protein_coding
description:
  Outer membrane protein/peptidoglycan-associated lipoprotein; PFAM: Rickettsia 17 kDa surface antigen, OmpA family.


ensembl_gene_id: PMI02_00263
symbol: EJL34890.1
gene_biotype: protein_coding
description:
  Outer membrane receptor protein; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI02_00268
symbol: EJL34895.1
gene_biotype: protein_coding
description:
  Outer membrane cobalamin receptor protein; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI02_00270
symbol: EJL34897.1
gene_biotype: protein_coding
description:
  Serine acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase.


ensembl_gene_id: PMI02_00273
symbol: EJL34900.1
gene_biotype: protein_coding
description:
  2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family.


ensembl_gene_id: PMI02_00276
symbol: EJL34903.1
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme; PFAM: Bacterial alpha-L-rhamnosidase, Alpha-L-rhamnosidase N-terminal domain.


ensembl_gene_id: PMI02_00277
symbol: EJL34904.1
gene_biotype: protein_coding
description:
  Beta-galactosidase/beta-glucuronidase; PFAM: domain, Glycosyl hydrolases family 2, TIM barrel domain, Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: PMI02_00279
symbol: EJL34906.1
gene_biotype: protein_coding
description:
  Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase.


ensembl_gene_id: PMI02_00281
symbol: EJL34908.1
gene_biotype: protein_coding
description:
  Lactate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: PMI02_00283
symbol: EJL34910.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: PMI02_00284
symbol: EJL34911.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: PMI02_00290
symbol: EJL34917.1
gene_biotype: protein_coding
description:
  Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.


ensembl_gene_id: PMI02_00292
symbol: EJL34919.1
gene_biotype: protein_coding
description:
  PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor.


ensembl_gene_id: PMI02_00294
symbol: EJL34921.1
gene_biotype: protein_coding
description:
  Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family, DeoR-like helix-turn-helix domain.


ensembl_gene_id: PMI02_00297
symbol: EJL34924.1
gene_biotype: protein_coding
description:
  Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain, short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.


ensembl_gene_id: PMI02_00298
symbol: EJL34925.1
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype.


ensembl_gene_id: PMI02_00304
symbol: EJL34931.1
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain, UDP-glucose/GDP-mannose dehydrogenase family, central domain, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase.


ensembl_gene_id: PMI02_00307
symbol: EJL34934.1
gene_biotype: protein_coding
description:
  Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family.


ensembl_gene_id: PMI02_00309
symbol: EJL34936.1
gene_biotype: protein_coding
description:
  Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase.


ensembl_gene_id: PMI02_00311
symbol: EJL34938.1
gene_biotype: protein_coding
description:
  PFAM: Chain length determinant protein, CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family.


ensembl_gene_id: PMI02_00318
symbol: EJL34945.1
gene_biotype: protein_coding
description:
  Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.


ensembl_gene_id: PMI02_00327
symbol: EJL34954.1
gene_biotype: protein_coding
description:
  Putative PLP-dependent enzyme possibly involved in cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: PMI02_00332
symbol: EJL34958.1
gene_biotype: protein_coding
description:
  PFAM: High-affinity nickel-transport protein; TIGRFAM: high-affinity nickel-transporter, HoxN/HupN/NixA family; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: PMI02_00338
symbol: EJL34964.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain; Transcriptional regulator.


ensembl_gene_id: PMI02_00339
symbol: EJL34965.1
gene_biotype: protein_coding
description:
  PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region.


ensembl_gene_id: PMI02_00340
symbol: EJL34966.1
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI02_00342
symbol: EJL34968.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain; PFAM: Ribbon-helix-helix protein, copG family, NikR C terminal nickel binding domain.


ensembl_gene_id: PMI02_00343
symbol: EJL34969.1
gene_biotype: protein_coding
description:
  Urea carboxylase-associated protein 2; PFAM: Domain of unknown function (DUF1989); TIGRFAM: urea carboxylase-associated protein 2.


ensembl_gene_id: PMI02_00345
symbol: EJL34971.1
gene_biotype: protein_coding
description:
  Urea carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Allophanate hydrolase subunit 2, Carbamoyl-phosphate synthase L chain, N-terminal domain, Allophanate hydrolase subunit 1, Biotin-requiring enzyme; TIGRFAM: urea carboxylase, biotin-dependent carboxylase uncharacterized domain.


ensembl_gene_id: PMI02_00355
symbol: EJL34981.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI02_00365
symbol: EJL34991.1
gene_biotype: protein_coding
description:
  Putative sugar phosphate isomerase; PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase.


ensembl_gene_id: PMI02_00366
symbol: EJL34992.1
gene_biotype: protein_coding
description:
  PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PMI02_00367
symbol: EJL34993.1
gene_biotype: protein_coding
description:
  Outer membrane cobalamin receptor protein; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor.


ensembl_gene_id: PMI02_00368
symbol: anmK
gene_biotype: protein_coding
description:
  Molecular chaperone; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: PMI02_00373
symbol: dld
gene_biotype: protein_coding
description:
  FAD/FMN-dependent dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.


ensembl_gene_id: PMI02_00375
symbol: EJL35001.1
gene_biotype: protein_coding
description:
  PFAM: Malic enzyme, NAD binding domain, Phosphate acetyl/butaryl transferase, Malic enzyme, N-terminal domain.


ensembl_gene_id: PMI02_00376
symbol: EJL35002.1
gene_biotype: protein_coding
description:
  Malto-oligosyltrehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: malto-oligosyltrehalose synthase.


ensembl_gene_id: PMI02_00378
symbol: EJL35004.1
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme GlgX; PFAM: Alpha amylase, catalytic domain, Carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: PMI02_00379
symbol: EJL35005.1
gene_biotype: protein_coding
description:
  Flavodoxin reductase family protein; PFAM: Oxidoreductase FAD-binding domain, Oxidoreductase NAD-binding domain.


ensembl_gene_id: PMI02_00383
symbol: EJL35009.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain.


ensembl_gene_id: PMI02_00384
symbol: EJL35010.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein; PFAM: FAD binding domain in molybdopterin dehydrogenase, CO dehydrogenase flavoprotein C-terminal domain.


ensembl_gene_id: PMI02_00385
symbol: EJL35011.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain, [2Fe-2S] binding domain.


ensembl_gene_id: PMI02_00392
symbol: EJL35018.1
gene_biotype: protein_coding
description:
  Na+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: PMI02_00394
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: PMI02_00396
symbol: aqpZ
gene_biotype: protein_coding
description:
  MIP family channel protein; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: PMI02_00409
symbol: EJL35035.1
gene_biotype: protein_coding
description:
  PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.


ensembl_gene_id: PMI02_00410
symbol: EJL35036.1
gene_biotype: protein_coding
description:
  PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.


ensembl_gene_id: PMI02_00413
symbol: EJL35039.1
gene_biotype: protein_coding
description:
  ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: ABC transporter transmembrane region.


ensembl_gene_id: PMI02_00414
symbol: EJL35040.1
gene_biotype: protein_coding
description:
  ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: ABC transporter.


ensembl_gene_id: PMI02_00418
symbol: EJL35044.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.


ensembl_gene_id: PMI02_00429
symbol: EJL35055.1
gene_biotype: protein_coding
description:
  Putative beta-xylosidase; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: PMI02_00436
symbol: EJL35062.1
gene_biotype: protein_coding
description:
  Glucose/galactose transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter.


ensembl_gene_id: PMI02_00438
symbol: EJL35064.1
gene_biotype: protein_coding
description:
  Dihydroxyacid dehydratase/phosphogluconate dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: PMI02_00445
symbol: EJL35071.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: PMI02_00448
symbol: EJL35074.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain, GGDEF domain, PAS fold, Bacterial signalling protein N terminal repeat; TIGRFAM: PAS domain S-box, diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI02_00455
symbol: EJL35081.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c, Cytochrome C oxidase subunit II, periplasmic domain; TIGRFAM: cytochrome c oxidase, subunit II.


ensembl_gene_id: PMI02_00456
symbol: EJL35082.1
gene_biotype: protein_coding
description:
  Heme/copper-type cytochrome/quinol oxidase, subunit 1; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: PMI02_00461
symbol: EJL35087.1
gene_biotype: protein_coding
description:
  acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme; TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase A-associated.


ensembl_gene_id: PMI02_00463
symbol: EJL35089.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain, Pyridoxal-dependent decarboxylase, pyridoxal binding domain.


ensembl_gene_id: PMI02_00470
symbol: EJL35096.1
gene_biotype: protein_coding
description:
  Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain.


ensembl_gene_id: PMI02_00473
symbol: EJL35099.1
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase, N-terminal domain, Beta-ketoacyl synthase, C-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: PMI02_00474
symbol: EJL35100.1
gene_biotype: protein_coding
description:
  Putative naringenin-chalcone synthase; PFAM: Chalcone and stilbene synthases, N-terminal domain, Chalcone and stilbene synthases, C-terminal domain.


ensembl_gene_id: PMI02_00482
symbol: EJL35108.1
gene_biotype: protein_coding
description:
  Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase.


ensembl_gene_id: PMI02_00494
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: PMI02_00495
symbol: EJL34594.1
gene_biotype: protein_coding
description:
  PFAM: Radical SAM superfamily, Uncharacterized protein family UPF0004; TIGRFAM: radical SAM methylthiotransferase, MiaB/RimO family.


ensembl_gene_id: PMI02_00496
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: PMI02_00497
symbol: EJL34596.1
gene_biotype: protein_coding
description:
  Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: PMI02_00498
symbol: EJL34597.1
gene_biotype: protein_coding
description:
  TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: PMI02_00499
symbol: kup
gene_biotype: protein_coding
description:
  K+ transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: PMI02_00504
symbol: ccmE
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: PMI02_00506
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: PMI02_00509
symbol: EJL34607.1
gene_biotype: protein_coding
description:
  Cu/Zn superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.


ensembl_gene_id: PMI02_00510
symbol: EJL34608.1
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.


ensembl_gene_id: PMI02_00511
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: PMI02_00513
symbol: bamA
gene_biotype: protein_coding
description:
  Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: PMI02_00515
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: PMI02_00517
symbol: EJL34615.1
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: PMI02_00518
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: PMI02_00521
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: PMI02_00522
symbol: rpsB
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: PMI02_00524
symbol: EJL34622.1
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase 2, CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI02_00525
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase precursor-related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: PMI02_00527
symbol: EJL34624.1
gene_biotype: protein_coding
description:
  PFAM: SpoU rRNA Methylase family, RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: PMI02_00529
symbol: EJL34626.1
gene_biotype: protein_coding
description:
  Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: PMI02_00530
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: PMI02_00531
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: PMI02_00532
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: PMI02_00533
symbol: rpsP
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: PMI02_00534
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: PMI02_00536
symbol: EJL34632.1
gene_biotype: protein_coding
description:
  TIGR02300 family protein; PFAM: Protein of unknown function (FYDLN_acid); TIGRFAM: TIGR02300 family protein.


ensembl_gene_id: PMI02_00537
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: PMI02_00539
symbol: EJL34635.1
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: PMI02_00541
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: PMI02_00543
symbol: atpF
gene_biotype: protein_coding
description:
  F0F1-type ATP synthase, beta subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: PMI02_00545
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: PMI02_00546
symbol: atpB
gene_biotype: protein_coding
description:
  F0F1-type ATP synthase, alpha subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: PMI02_00547
symbol: EJL34643.1
gene_biotype: protein_coding
description:
  Hypothetical protein; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.


ensembl_gene_id: PMI02_00551
symbol: EJL34647.1
gene_biotype: protein_coding
description:
  DNA repair protein radc; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family.


ensembl_gene_id: PMI02_00553
symbol: EJL34649.1
gene_biotype: protein_coding
description:
  PFAM: Lyase, Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: PMI02_00555
symbol: EJL34651.1
gene_biotype: protein_coding
description:
  Orotidine 5''-phosphate decarboxylase, subfamily 1; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP).


ensembl_gene_id: PMI02_00560
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: PMI02_00562
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: PMI02_00563
symbol: EJL34659.1
gene_biotype: protein_coding
description:
  TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: PMI02_00565
symbol: EJL34661.1
gene_biotype: protein_coding
description:
  PFAM: RNA pseudouridylate synthase, S4 domain; TIGRFAM: pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: PMI02_00566
symbol: EJL34662.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmD family; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family.


ensembl_gene_id: PMI02_00570
symbol: EJL34666.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: PMI02_00575
symbol: EJL34671.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain.


ensembl_gene_id: PMI02_00578
symbol: EJL34673.1
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, eukaryotic type; Belongs to the isocitrate and isopropylmalate dehydrogenases family.


ensembl_gene_id: PMI02_00586
symbol: EJL34681.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial DNA polymerase III alpha subunit, PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc).


ensembl_gene_id: PMI02_00588
symbol: EJL34573.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_00589
symbol: EJL34574.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase; overlaps another CDS with the same product name; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI02_00590
symbol: EJL34575.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.


ensembl_gene_id: PMI02_00597
symbol: EJL34582.1
gene_biotype: protein_coding
description:
  Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Cupin domain, Methyltransferase domain.


ensembl_gene_id: PMI02_00599
symbol: EJL34584.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl hydrolase family 3 C terminal domain, Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: PMI02_00606
symbol: EJL34460.1
gene_biotype: protein_coding
description:
  Protein involved in formation of curli polymers; PFAM: Curli production assembly/transport component CsgG.


ensembl_gene_id: PMI02_00626
symbol: ssuB
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI02_00627
symbol: EJL34481.1
gene_biotype: protein_coding
description:
  Putative metal-dependent enzyme of the double-stranded beta helix superfamily; PFAM: Cysteine dioxygenase type I.


ensembl_gene_id: PMI02_00629
symbol: EJL34483.1
gene_biotype: protein_coding
description:
  Flavin-dependent oxidoreductase, methylene-tetrahydromethanopterin reductase; PFAM: Luciferase-like monooxygenase.


ensembl_gene_id: PMI02_00631
symbol: EJL34485.1
gene_biotype: protein_coding
description:
  PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulfonates family.


ensembl_gene_id: PMI02_00632
symbol: EJL34486.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for ferrienterochelin and colicin; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor.


ensembl_gene_id: PMI02_00634
symbol: EJL34488.1
gene_biotype: protein_coding
description:
  PFAM: OPT oligopeptide transporter protein; TIGRFAM: putative oligopeptide transporter, OPT family, oligopeptide transporters, OPT superfamily.


ensembl_gene_id: PMI02_00635
symbol: EJL34489.1
gene_biotype: protein_coding
description:
  PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: PMI02_00636
symbol: EJL34490.1
gene_biotype: protein_coding
description:
  Altronate dehydratase; PFAM: SAF domain, D-galactarate dehydratase / Altronate hydrolase, C terminus.


ensembl_gene_id: PMI02_00644
symbol: EJL34498.1
gene_biotype: protein_coding
description:
  PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: PMI02_00674
symbol: EJL34412.1
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase specialized sigma subunit, sigma24; PFAM: Sigma-70, region 4, Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: PMI02_00690
symbol: EJL34349.1
gene_biotype: protein_coding
description:
  Putative dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain, Oxidoreductase family, NAD-binding Rossmann fold.


ensembl_gene_id: PMI02_00695
symbol: EJL34354.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for ferrienterochelin and colicin; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI02_00700
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: PMI02_00702
symbol: recA
gene_biotype: protein_coding
description:
  Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: PMI02_00703
symbol: EJL34274.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain, PAS fold.


ensembl_gene_id: PMI02_00705
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: PMI02_00708
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: PMI02_00712
symbol: greB
gene_biotype: protein_coding
description:
  Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.


ensembl_gene_id: PMI02_00715
symbol: EJL34286.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Pyridine nucleotide-disulphide oxidoreductase, dimerization domain.


ensembl_gene_id: PMI02_00718
symbol: EJL34289.1
gene_biotype: protein_coding
description:
  Beta-propeller domain-containing protein, methanol dehydrogenase; PFAM: Domain of unknown function (DUF477).


ensembl_gene_id: PMI02_00721
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: PMI02_00725
symbol: metZ
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase/cystathionine gamma-synthase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: PMI02_00726
symbol: EJL34297.1
gene_biotype: protein_coding
description:
  Dolichyl-phosphate-mannose--protein O-mannosyl transferase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.


ensembl_gene_id: PMI02_00729
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: PMI02_00752
symbol: EJL34181.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PMI02_00757
symbol: EJL34185.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4, Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PMI02_00766
symbol: EJL34194.1
gene_biotype: protein_coding
description:
  Protease II; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain, Prolyl oligopeptidase family.


ensembl_gene_id: PMI02_00793
symbol: EJL34079.1
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins; Belongs to the OXA1/ALB3/YidC family. Type 1 subfamily.


ensembl_gene_id: PMI02_00794
symbol: engB
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC/EngB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: PMI02_00795
symbol: EJL34081.1
gene_biotype: protein_coding
description:
  Phosphate transport regulator related to PhoU; PFAM: Protein of unknown function DUF47, NUDIX domain; TIGRFAM: TIGR00153 family protein.


ensembl_gene_id: PMI02_00800
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: PMI02_00803
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: PMI02_00804
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: PMI02_00805
symbol: cobB
gene_biotype: protein_coding
description:
  NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family; Belongs to the sirtuin family. Class III subfamily.


ensembl_gene_id: PMI02_00806
symbol: EJL34092.1
gene_biotype: protein_coding
description:
  Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: MoeZ/MoeB domain, ThiF family.


ensembl_gene_id: PMI02_00809
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: PMI02_00811
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase Fpg; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: PMI02_00813
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: PMI02_00814
symbol: EJL34100.1
gene_biotype: protein_coding
description:
  2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.


ensembl_gene_id: PMI02_00816
symbol: EJL34102.1
gene_biotype: protein_coding
description:
  PFAM: DNA / pantothenate metabolism flavoprotein, Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic.


ensembl_gene_id: PMI02_00817
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: PMI02_00821
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI02_00822
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: PMI02_00823
symbol: secB
gene_biotype: protein_coding
description:
  Protein-export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: PMI02_00828
symbol: EJL34114.1
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase, F subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit.


ensembl_gene_id: PMI02_00829
symbol: EJL34115.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: PMI02_00849
symbol: EJL33966.1
gene_biotype: protein_coding
description:
  Flavin-dependent oxidoreductase, methylene-tetrahydromethanopterin reductase; PFAM: Luciferase-like monooxygenase; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_00862
symbol: EJL33979.1
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: PMI02_00863
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: PMI02_00874
symbol: EJL33991.1
gene_biotype: protein_coding
description:
  Zn-dependent alcohol dehydrogenase, class III; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase.


ensembl_gene_id: PMI02_00877
symbol: EJL33994.1
gene_biotype: protein_coding
description:
  N-methylhydantoinase A/acetone carboxylase, beta subunit; PFAM: Hydantoinase/oxoprolinase, Hydantoinase/oxoprolinase N-terminal region.


ensembl_gene_id: PMI02_00884
symbol: EJL34001.1
gene_biotype: protein_coding
description:
  PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit.


ensembl_gene_id: PMI02_00885
symbol: EJL34002.1
gene_biotype: protein_coding
description:
  Putative NADP-dependent oxidoreductase; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase.


ensembl_gene_id: PMI02_00887
symbol: EJL34004.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase/fumarate reductase flavoprotein subunit; PFAM: FAD binding domain; TIGRFAM: flavocytochrome c.


ensembl_gene_id: PMI02_00889
symbol: EJL34006.1
gene_biotype: protein_coding
description:
  Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: ubiE/COQ5 methyltransferase family.


ensembl_gene_id: PMI02_00905
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: PMI02_00915
symbol: EJL33831.1
gene_biotype: protein_coding
description:
  PFAM: Chain length determinant protein; TIGRFAM: polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family.


ensembl_gene_id: PMI02_00916
symbol: EJL33832.1
gene_biotype: protein_coding
description:
  ABC-type polysaccharide/polyol phosphate export system, permease component; PFAM: ABC-2 type transporter.


ensembl_gene_id: PMI02_00925
symbol: EJL33841.1
gene_biotype: protein_coding
description:
  Antitoxin of toxin-antitoxin stability system; Antitoxin component of a type II toxin-antitoxin (TA) system.


ensembl_gene_id: PMI02_00929
symbol: EJL33845.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.


ensembl_gene_id: PMI02_00930
symbol: EJL33846.1
gene_biotype: protein_coding
description:
  Acyltransferase family protein; PFAM: Maltose acetyltransferase, Bacterial transferase hexapeptide (three repeats).


ensembl_gene_id: PMI02_00931
symbol: EJL33847.1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate enzyme, YggS family; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family.


ensembl_gene_id: PMI02_00935
symbol: EJL33851.1
gene_biotype: protein_coding
description:
  Kef-type K+ transport system, membrane component; PFAM: TrkA-N domain, Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family.


ensembl_gene_id: PMI02_00936
symbol: EJL33852.1
gene_biotype: protein_coding
description:
  PFAM: Alanine dehydrogenase/PNT, C-terminal domain, Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; Belongs to the AlaDH/PNT family.


ensembl_gene_id: PMI02_00946
symbol: EJL33862.1
gene_biotype: protein_coding
description:
  Aminodeoxychorismate synthase, component I; PFAM: Aminotransferase class IV, chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade.


ensembl_gene_id: PMI02_00956
symbol: dnaE2
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase III PolC; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: PMI02_00957
symbol: EJL33873.1
gene_biotype: protein_coding
description:
  nucleotidyltransferase/DNA polymerase involved in DNA repair; PFAM: impB/mucB/samB family C-terminal, impB/mucB/samB family.


ensembl_gene_id: PMI02_00960
symbol: EJL33876.1
gene_biotype: protein_coding
description:
  Glycosyl/glycerophosphate transferase, teichoic acid biosynthesis; PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase.


ensembl_gene_id: PMI02_00964
symbol: EJL33727.1
gene_biotype: protein_coding
description:
  PFAM: F pilus assembly Type-IV secretion system for plasmid transfer; TIGRFAM: type-IV secretion system protein TraC, type IV secretion/conjugal transfer ATPase, VirB4 family.


ensembl_gene_id: PMI02_00966
symbol: EJL33729.1
gene_biotype: protein_coding
description:
  Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: PMI02_00974
symbol: EJL33737.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain, SNF2 family N-terminal domain, SWIM zinc finger.


ensembl_gene_id: PMI02_00977
symbol: EJL33740.1
gene_biotype: protein_coding
description:
  Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: PMI02_00995
symbol: EJL33758.1
gene_biotype: protein_coding
description:
  DNA-binding protein with HTH domain; PFAM: Bacterial regulatory proteins, luxR family, Autoinducer binding domain.


ensembl_gene_id: PMI02_00997
symbol: EJL33760.1
gene_biotype: protein_coding
description:
  Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; PFAM: Phytanoyl-CoA dioxygenase (PhyH).


ensembl_gene_id: PMI02_01003
symbol: EJL33766.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for ferrienterochelin and colicin; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor, Secretin and TonB N terminus short domain.


ensembl_gene_id: PMI02_01020
symbol: EJL33661.1
gene_biotype: protein_coding
description:
  PFAM: PTS system, Lactose/Cellobiose specific IIB subunit; TIGRFAM: PTS system, fructose-specific, IIB component, PTS system, fructose subfamily, IIC component.


ensembl_gene_id: PMI02_01021
symbol: EJL33662.1
gene_biotype: protein_coding
description:
  1-phosphofructokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: 1-phosphofructokinase, hexose kinase, 1-phosphofructokinase family.


ensembl_gene_id: PMI02_01022
symbol: EJL33663.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme, mobile domain, PEP-utilising enzyme, TIM barrel domain, PTS HPr component phosphorylation site, PEP-utilising enzyme, N-terminal, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase, Phosphotransferase System HPr (HPr) Family.


ensembl_gene_id: PMI02_01025
symbol: fbp
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase; PFAM: Fructose-1-6-bisphosphatase; Belongs to the FBPase class 1 family.


ensembl_gene_id: PMI02_01031
symbol: EJL33604.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.


ensembl_gene_id: PMI02_01034
symbol: mltG
gene_biotype: protein_coding
description:
  YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: PMI02_01035
symbol: EJL33608.1
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: PMI02_01039
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: PMI02_01041
symbol: rnd
gene_biotype: protein_coding
description:
  Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.


ensembl_gene_id: PMI02_01044
symbol: EJL33617.1
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI02_01049
symbol: EJL33622.1
gene_biotype: protein_coding
description:
  Dioxygenase, isopenicillin N synthase; PFAM: 2OG-Fe(II) oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family.


ensembl_gene_id: PMI02_01052
symbol: EJL33509.1
gene_biotype: protein_coding
description:
  Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PMI02_01053
symbol: EJL33510.1
gene_biotype: protein_coding
description:
  PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: PMI02_01059
symbol: EJL33516.1
gene_biotype: protein_coding
description:
  Sulfite oxidase-like oxidoreductase; PFAM: Mo-co oxidoreductase dimerization domain, Oxidoreductase molybdopterin binding domain.


ensembl_gene_id: PMI02_01076
symbol: EJL33533.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; overlaps another CDS with the same product name; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI02_01077
symbol: EJL33534.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_01081
symbol: EJL33538.1
gene_biotype: protein_coding
description:
  Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit; PFAM: Amidase; Belongs to the amidase family.


ensembl_gene_id: PMI02_01082
symbol: rutA
gene_biotype: protein_coding
description:
  Pyrimidine utilization protein A; Catalyzes the pyrimidine ring opening between N-3 and C-4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate.


ensembl_gene_id: PMI02_01087
symbol: EJL33544.1
gene_biotype: protein_coding
description:
  Glycoside/pentoside/hexuronide transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter.


ensembl_gene_id: PMI02_01089
symbol: EJL33546.1
gene_biotype: protein_coding
description:
  Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold, Oxidoreductase family, C-terminal alpha/beta domain.


ensembl_gene_id: PMI02_01090
symbol: EJL33547.1
gene_biotype: protein_coding
description:
  Sugar phosphate isomerase/epimerase; PFAM: AP endonuclease family 2 C terminus, Xylose isomerase-like TIM barrel.


ensembl_gene_id: PMI02_01099
symbol: speE
gene_biotype: protein_coding
description:
  Putative spermidine synthase with an N-terminal membrane domain; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.


ensembl_gene_id: PMI02_01101
symbol: EJL33455.1
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.


ensembl_gene_id: PMI02_01111
symbol: EJL33465.1
gene_biotype: protein_coding
description:
  Purine-cytosine permease-like transporter; PFAM: Permease for cytosine/purines, uracil, thiamine, allantoin.


ensembl_gene_id: PMI02_01129
symbol: EJL33483.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI02_01131
symbol: EJL33485.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI02_01138
symbol: EJL33389.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI02_01144
symbol: EJL33395.1
gene_biotype: protein_coding
description:
  Y-Y-Y domain-containing protein,histidine kinase; PFAM: Histidine kinase, Y_Y_Y domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: PMI02_01152
symbol: EJL33403.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for ferrienterochelin and colicin; PFAM: TonB-dependent Receptor Plug Domain, Secretin and TonB N terminus short domain.


ensembl_gene_id: PMI02_01157
symbol: EJL33408.1
gene_biotype: protein_coding
description:
  Lactate dehydrogenase-like oxidoreductase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.


ensembl_gene_id: PMI02_01159
symbol: EJL33410.1
gene_biotype: protein_coding
description:
  DNA-binding ferritin-like protein (oxidative damage protectant); PFAM: Ferritin-like domain; Belongs to the Dps family.


ensembl_gene_id: PMI02_01168
symbol: EJL33419.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome C oxidase subunit II, periplasmic domain; TIGRFAM: cytochrome o ubiquinol oxidase subunit II.


ensembl_gene_id: PMI02_01169
symbol: EJL33420.1
gene_biotype: protein_coding
description:
  Heme/copper-type cytochrome/quinol oxidase, subunit 1; PFAM: Cytochrome C and Quinol oxidase polypeptide I.


ensembl_gene_id: PMI02_01170
symbol: EJL33325.1
gene_biotype: protein_coding
description:
  tRNA isopentenyltransferase MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: PMI02_01171
symbol: EJL33326.1
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type.


ensembl_gene_id: PMI02_01172
symbol: EJL33327.1
gene_biotype: protein_coding
description:
  PFAM: Small subunit of acetolactate synthase, ACT domain; TIGRFAM: acetolactate synthase, small subunit.


ensembl_gene_id: PMI02_01173
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: PMI02_01182
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: PMI02_01184
symbol: EJL33339.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: Biotin-requiring enzyme.


ensembl_gene_id: PMI02_01199
symbol: EJL33164.1
gene_biotype: protein_coding
description:
  Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats).


ensembl_gene_id: PMI02_01200
symbol: EJL33165.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized ACR, YggU family COG1872; Belongs to the UPF0235 family.


ensembl_gene_id: PMI02_01201
symbol: EJL33166.1
gene_biotype: protein_coding
description:
  DNA ligase, ATP-dependent, PP_1105 family; PFAM: ATP dependent DNA ligase domain, DNA ligase N terminus, ATP dependent DNA ligase C terminal region; TIGRFAM: DNA ligase, ATP-dependent, PP_1105 family.


ensembl_gene_id: PMI02_01203
symbol: EJL33168.1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: AAA domain (Cdc48 subfamily), C-terminal, D2-small domain, of ClpB protein, Clp amino terminal domain, ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PMI02_01204
symbol: EJL33169.1
gene_biotype: protein_coding
description:
  Putative NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: putative NAD(P)H quinone oxidoreductase, PIG3 family.


ensembl_gene_id: PMI02_01206
symbol: EJL33171.1
gene_biotype: protein_coding
description:
  Integral membrane protein CcmA involved in cell shape determination; PFAM: Protein of unknown function, DUF583.


ensembl_gene_id: PMI02_01208
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: PMI02_01209
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: PMI02_01210
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: PMI02_01211
symbol: rlmH
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: PMI02_01213
symbol: EJL33178.1
gene_biotype: protein_coding
description:
  C-terminal processing peptidase; PFAM: Peptidase family S41, PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); Belongs to the peptidase S41A family.


ensembl_gene_id: PMI02_01215
symbol: coq7
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis protein COQ7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.


ensembl_gene_id: PMI02_01219
symbol: EJL33184.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN).


ensembl_gene_id: PMI02_01220
symbol: EJL33185.1
gene_biotype: protein_coding
description:
  DnaJ-class molecular chaperone with C-terminal Zn finger domain; PFAM: DnaJ C terminal region, DnaJ domain.


ensembl_gene_id: PMI02_01221
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: PMI02_01228
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain, Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; Belongs to the GARS family.


ensembl_gene_id: PMI02_01229
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: PMI02_01233
symbol: rpmB
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: PMI02_01234
symbol: tadA
gene_biotype: protein_coding
description:
  Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: PMI02_01236
symbol: EJL33201.1
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain, Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.


ensembl_gene_id: PMI02_01237
symbol: EJL33202.1
gene_biotype: protein_coding
description:
  Response regulator of the LytR/AlgR family; PFAM: Response regulator receiver domain, LytTr DNA-binding domain.


ensembl_gene_id: PMI02_01238
symbol: EJL33203.1
gene_biotype: protein_coding
description:
  Putative regulator of cell autolysis; PFAM: Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: PMI02_01245
symbol: EJL33210.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, DEAD/DEAH box helicase.


ensembl_gene_id: PMI02_01248
symbol: EJL33212.1
gene_biotype: protein_coding
description:
  Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.


ensembl_gene_id: PMI02_01249
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: PMI02_01250
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: PMI02_01252
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: PMI02_01254
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: PMI02_01258
symbol: EJL33221.1
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain, CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase.


ensembl_gene_id: PMI02_01260
symbol: EJL33223.1
gene_biotype: protein_coding
description:
  Periplasmic glucans biosynthesis protein; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: PMI02_01261
symbol: EJL33224.1
gene_biotype: protein_coding
description:
  TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PMI02_01270
symbol: EJL33102.1
gene_biotype: protein_coding
description:
  DNA-binding domain-containing protein, AraC-type; PFAM: AraC-type transcriptional regulator N-terminus.


ensembl_gene_id: PMI02_01289
symbol: EJL33121.1
gene_biotype: protein_coding
description:
  PFAM: Type-F conjugative transfer system pilin assembly protein; TIGRFAM: type-F conjugative transfer system pilin assembly protein TrbC.


ensembl_gene_id: PMI02_01293
symbol: EJL33125.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: PMI02_01300
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: PMI02_01301
symbol: EJL32957.1
gene_biotype: protein_coding
description:
  PFAM: Patatin-like phospholipase, Protein of unknown function (DUF3376); TIGRFAM: patatin-related protein.


ensembl_gene_id: PMI02_01302
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: PMI02_01305
symbol: EJL32961.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: PMI02_01306
symbol: EJL32962.1
gene_biotype: protein_coding
description:
  Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain, PHB/PHA accumulation regulator DNA-binding domain; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR.


ensembl_gene_id: PMI02_01308
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase, family I; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).


ensembl_gene_id: PMI02_01309
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: PMI02_01311
symbol: EJL32967.1
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: PMI02_01314
symbol: EJL32970.1
gene_biotype: protein_coding
description:
  Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; TIGRFAM: dihydrolipoamide dehydrogenase.


ensembl_gene_id: PMI02_01317
symbol: acsA
gene_biotype: protein_coding
description:
  acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: PMI02_01327
symbol: EJL32983.1
gene_biotype: protein_coding
description:
  Nickel uptake transporter family protein; PFAM: Nickel uptake substrate-specific transmembrane region.


ensembl_gene_id: PMI02_01328
symbol: EJL32984.1
gene_biotype: protein_coding
description:
  TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.


ensembl_gene_id: PMI02_01330
symbol: EJL32826.1
gene_biotype: protein_coding
description:
  Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PMI02_01342
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: PMI02_01343
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: PMI02_01344
symbol: EJL32840.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: PMI02_01345
symbol: EJL32841.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: PMI02_01346
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: PMI02_01347
symbol: EJL32843.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF1588), Protein of unknown function (DUF1592), Protein of unknown function (DUF1587), Protein of unknown function (DUF1595), Protein of unknown function (DUF1585).


ensembl_gene_id: PMI02_01359
symbol: EJL32855.1
gene_biotype: protein_coding
description:
  TIGR00730 family protein; PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein, TIGR00730 family protein; Belongs to the LOG family.


ensembl_gene_id: PMI02_01360
symbol: EJL32856.1
gene_biotype: protein_coding
description:
  Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.


ensembl_gene_id: PMI02_01361
symbol: EJL32857.1
gene_biotype: protein_coding
description:
  Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.


ensembl_gene_id: PMI02_01363
symbol: EJL32859.1
gene_biotype: protein_coding
description:
  PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit.


ensembl_gene_id: PMI02_01364
symbol: EJL32860.1
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, small subunit; PFAM: FAD binding domain in molybdopterin dehydrogenase, CO dehydrogenase flavoprotein C-terminal domain, [2Fe-2S] binding domain; TIGRFAM: xanthine dehydrogenase, small subunit.


ensembl_gene_id: PMI02_01365
symbol: EJL32861.1
gene_biotype: protein_coding
description:
  Hydroxyisourate hydrolase; PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.


ensembl_gene_id: PMI02_01391
symbol: EJL32620.1
gene_biotype: protein_coding
description:
  PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PMI02_01417
symbol: rbsK
gene_biotype: protein_coding
description:
  Sugar kinase, ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: PMI02_01426
symbol: EJL32571.1
gene_biotype: protein_coding
description:
  Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI02_01442
symbol: EJL32388.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain, Bacterial regulatory protein, Fis family, Sigma-54 interaction domain.


ensembl_gene_id: PMI02_01448
symbol: EJL32393.1
gene_biotype: protein_coding
description:
  PFAM: Glycine cleavage T-protein C-terminal barrel domain, Aminomethyltransferase folate-binding domain; TIGRFAM: glycine cleavage system T protein.


ensembl_gene_id: PMI02_01449
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: PMI02_01450
symbol: gcvPA
gene_biotype: protein_coding
description:
  Glycine cleavage system protein P; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.


ensembl_gene_id: PMI02_01451
symbol: EJL32396.1
gene_biotype: protein_coding
description:
  Glycine cleavage system protein P; PFAM: Aminotransferase class-V; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_01458
symbol: EJL32403.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain, Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PMI02_01459
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 3 (chain A); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: PMI02_01460
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PMI02_01461
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: PMI02_01462
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: PMI02_01465
symbol: EJL32410.1
gene_biotype: protein_coding
description:
  PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.


ensembl_gene_id: PMI02_01466
symbol: EJL32411.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: PMI02_01467
symbol: EJL32412.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: PMI02_01468
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 1 (chain H); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: PMI02_01469
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PMI02_01470
symbol: EJL32415.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 6 (chain J); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PMI02_01471
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: PMI02_01472
symbol: EJL32417.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH dehydrogenase subunit 5 C-terminus, NADH-Ubiquinone/plastoquinone (complex I), various chains, NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L.


ensembl_gene_id: PMI02_01473
symbol: EJL32418.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains, NADH-ubiquinone oxidoreductase chain 4, amino terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M.


ensembl_gene_id: PMI02_01474
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: PMI02_01475
symbol: EJL32420.1
gene_biotype: protein_coding
description:
  birA, biotin-(acetyl-CoA-carboxylase) ligase; PFAM: Biotin protein ligase C terminal domain, Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region.


ensembl_gene_id: PMI02_01476
symbol: coaX
gene_biotype: protein_coding
description:
  Pantothenate kinase, type III; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: PMI02_01477
symbol: EJL32422.1
gene_biotype: protein_coding
description:
  PFAM: Metallo-beta-lactamase superfamily, RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein.


ensembl_gene_id: PMI02_01486
symbol: EJL32431.1
gene_biotype: protein_coding
description:
  PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); Belongs to the citrate synthase family.


ensembl_gene_id: PMI02_01487
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: PMI02_01492
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: PMI02_01502
symbol: EJL32317.1
gene_biotype: protein_coding
description:
  PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.


ensembl_gene_id: PMI02_01507
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: PMI02_01508
symbol: fcl
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate-sugar epimerase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.


ensembl_gene_id: PMI02_01512
symbol: EJL32327.1
gene_biotype: protein_coding
description:
  Acetyltransferase (isoleucine patch superfamily); PFAM: Bacterial transferase hexapeptide (three repeats).


ensembl_gene_id: PMI02_01521
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: PMI02_01525
symbol: nnrD
gene_biotype: protein_coding
description:
  yjeF-like protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimer [...]


ensembl_gene_id: PMI02_01526
symbol: EJL32146.1
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; PFAM: tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: PMI02_01527
symbol: EJL32147.1
gene_biotype: protein_coding
description:
  PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase, Glu/Leu/Phe/Val dehydrogenase, dimerization domain.


ensembl_gene_id: PMI02_01529
symbol: EJL32149.1
gene_biotype: protein_coding
description:
  Maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; TIGRFAM: maleylacetoacetate isomerase.


ensembl_gene_id: PMI02_01530
symbol: EJL32150.1
gene_biotype: protein_coding
description:
  Fumarylacetoacetase; PFAM: Domain of unknown function (DUF1969), Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: fumarylacetoacetase.


ensembl_gene_id: PMI02_01531
symbol: hmgA
gene_biotype: protein_coding
description:
  Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.


ensembl_gene_id: PMI02_01537
symbol: EJL32157.1
gene_biotype: protein_coding
description:
  S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase; PFAM: Protein of unknown function (DUF3419).


ensembl_gene_id: PMI02_01541
symbol: EJL32161.1
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.


ensembl_gene_id: PMI02_01542
symbol: EJL32162.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain, Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: PMI02_01546
symbol: EJL32166.1
gene_biotype: protein_coding
description:
  5-aminolevulinic acid synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase, 5-aminolevulinic acid synthase.


ensembl_gene_id: PMI02_01549
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: PMI02_01551
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I, bacterial; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removi [...]


ensembl_gene_id: PMI02_01555
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: PMI02_01556
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: PMI02_01557
symbol: EJL32177.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.


ensembl_gene_id: PMI02_01563
symbol: EJL32183.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); PFAM: Carboxyl transferase domain.


ensembl_gene_id: PMI02_01566
symbol: EJL32186.1
gene_biotype: protein_coding
description:
  PFAM: Methylmalonyl-CoA mutase, B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain, methylmalonyl-CoA mutase C-terminal domain.


ensembl_gene_id: PMI02_01567
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: PMI02_01569
symbol: EJL32189.1
gene_biotype: protein_coding
description:
  acetyl/propionyl-CoA carboxylase, alpha subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain, Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit.


ensembl_gene_id: PMI02_01570
symbol: EJL32190.1
gene_biotype: protein_coding
description:
  Export-related chaperone CsaA; PFAM: Putative tRNA binding domain; TIGRFAM: export-related chaperone CsaA.


ensembl_gene_id: PMI02_01573
symbol: EJL32193.1
gene_biotype: protein_coding
description:
  PFAM: Major Facilitator Superfamily; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial.


ensembl_gene_id: PMI02_01574
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: PMI02_01575
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: PMI02_01578
symbol: xerC
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: PMI02_01582
symbol: EJL32202.1
gene_biotype: protein_coding
description:
  ADP-ribose pyrophosphatase; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; Belongs to the Nudix hydrolase family.


ensembl_gene_id: PMI02_01601
symbol: EJL32040.1
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: PMI02_01607
symbol: EJL32046.1
gene_biotype: protein_coding
description:
  CheY-like receiver domain-containing protein; PFAM: Sigma-70, region 4, Response regulator receiver domain.


ensembl_gene_id: PMI02_01614
symbol: EJL32053.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI02_01616
symbol: EJL32055.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain, GGDEF domain, Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI02_01618
symbol: EJL32057.1
gene_biotype: protein_coding
description:
  Bacteriophytochrome (light-regulated signal transduction histidine kinase); PFAM: Response regulator receiver domain, GAF domain, HWE histidine kinase, Phytochrome region, PAS fold.


ensembl_gene_id: PMI02_01645
symbol: EJL31847.1
gene_biotype: protein_coding
description:
  Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus, Pyrrolo-quinoline quinone coenzyme C-terminus, PQQ enzyme repeat; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family.


ensembl_gene_id: PMI02_01652
symbol: EJL31854.1
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: PMI02_01654
symbol: EJL31856.1
gene_biotype: protein_coding
description:
  Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.


ensembl_gene_id: PMI02_01655
symbol: EJL31857.1
gene_biotype: protein_coding
description:
  Amino acid adenylation enzyme/thioester reductase family protein; PFAM: Phosphopantetheine attachment site, Thioesterase domain, AMP-binding enzyme; TIGRFAM: amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: PMI02_01669
symbol: EJL31871.1
gene_biotype: protein_coding
description:
  Amidohydrolase, imidazolonepropionase; PFAM: WD40-like Beta Propeller Repeat, Amidohydrolase family.


ensembl_gene_id: PMI02_01673
symbol: EJL31875.1
gene_biotype: protein_coding
description:
  PFAM: Serine dehydratase alpha chain, Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form.


ensembl_gene_id: PMI02_01692
symbol: EJL31729.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain, Electron transfer flavoprotein FAD-binding domain.


ensembl_gene_id: PMI02_01694
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: PMI02_01722
symbol: EJL31568.1
gene_biotype: protein_coding
description:
  SCO1/SenC/PrrC protein; Involved in biogenesis of respiratory and photosynthetic systems; PFAM: SCO1/SenC.


ensembl_gene_id: PMI02_01726
symbol: EJL31572.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: PMI02_01747
symbol: EJL31303.1
gene_biotype: protein_coding
description:
  Response regulator with putative antiterminator output domain; PFAM: Response regulator receiver domain, ANTAR domain.


ensembl_gene_id: PMI02_01753
symbol: EJL31309.1
gene_biotype: protein_coding
description:
  NAD(P)H-dependent nitrite reductase, large subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase, BFD-like [2Fe-2S] binding domain, Nitrite and sulphite reductase 4Fe-4S domain, Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: nitrite reductase [NAD(P)H], large subunit.


ensembl_gene_id: PMI02_01755
symbol: EJL31311.1
gene_biotype: protein_coding
description:
  Putative anaerobic dehydrogenase; PFAM: Molybdopterin oxidoreductase, Molydopterin dinucleotide binding domain, BFD-like [2Fe-2S] binding domain, Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.


ensembl_gene_id: PMI02_01756
symbol: EJL31312.1
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase.


ensembl_gene_id: PMI02_01763
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: PMI02_01765
symbol: EJL31321.1
gene_biotype: protein_coding
description:
  NADPH-dependent glutamate synthase beta chain-like oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: PMI02_01766
symbol: EJL31322.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain, GGDEF domain, PAS fold; TIGRFAM: PAS domain S-box, diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI02_01767
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: PMI02_01773
symbol: EJL31329.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II, Phosphoglucomutase/phosphomannomutase, C-terminal domain, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.


ensembl_gene_id: PMI02_01774
symbol: EJL31330.1
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family.


ensembl_gene_id: PMI02_01784
symbol: EJL31263.1
gene_biotype: protein_coding
description:
  Molybdopterin-dependent oxidoreductase alpha subunit; PFAM: Molybdopterin oxidoreductase, Molydopterin dinucleotide binding domain; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: PMI02_01794
symbol: EJL31121.1
gene_biotype: protein_coding
description:
  Putative oxidoreductase; PFAM: Luciferase-like monooxygenase; TIGRFAM: probable F420-dependent oxidoreductase, Rv2161c family.


ensembl_gene_id: PMI02_01795
symbol: EJL31122.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain, Transcriptional regulatory protein, C terminal; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB.


ensembl_gene_id: PMI02_01796
symbol: EJL31123.1
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: PMI02_01797
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: PMI02_01798
symbol: EJL31125.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstA; PFAM: Binding-protein-dependent transport system inner membrane component, Domain of unknown function (DUF3333); TIGRFAM: phosphate ABC transporter, permease protein PstA.


ensembl_gene_id: PMI02_01799
symbol: EJL31126.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PMI02_01803
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: PMI02_01804
symbol: edd
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.


ensembl_gene_id: PMI02_01805
symbol: glk
gene_biotype: protein_coding
description:
  PFAM: Glucokinase; TIGRFAM: glucokinase, proteobacterial type; Belongs to the bacterial glucokinase family.


ensembl_gene_id: PMI02_01807
symbol: EJL31134.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.


ensembl_gene_id: PMI02_01813
symbol: EJL31140.1
gene_biotype: protein_coding
description:
  Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.


ensembl_gene_id: PMI02_01815
symbol: EJL31142.1
gene_biotype: protein_coding
description:
  PFAM: Arginine N-succinyltransferase beta subunit; TIGRFAM: arginine and ornithine succinyltransferase subunits.


ensembl_gene_id: PMI02_01816
symbol: astB
gene_biotype: protein_coding
description:
  Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).


ensembl_gene_id: PMI02_01817
symbol: EJL31144.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.


ensembl_gene_id: PMI02_01819
symbol: EJL31146.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase.


ensembl_gene_id: PMI02_01820
symbol: EJL31147.1
gene_biotype: protein_coding
description:
  Phenylalanine-4-hydroxylase, monomeric form; PFAM: Biopterin-dependent aromatic amino acid hydroxylase; TIGRFAM: phenylalanine-4-hydroxylase, monomeric form.


ensembl_gene_id: PMI02_01831
symbol: msrA
gene_biotype: protein_coding
description:
  methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: PMI02_01837
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: PMI02_01838
symbol: EJL31165.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase.


ensembl_gene_id: PMI02_01839
symbol: EJL31166.1
gene_biotype: protein_coding
description:
  ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: PMI02_01840
symbol: EJL31167.1
gene_biotype: protein_coding
description:
  Membrane protease subunit, stomatin/prohibitin; PFAM: SPFH domain / Band 7 family; TIGRFAM: HflK protein; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_01841
symbol: EJL31168.1
gene_biotype: protein_coding
description:
  Membrane protease subunit, stomatin/prohibitin; PFAM: SPFH domain / Band 7 family; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_01842
symbol: EJL31169.1
gene_biotype: protein_coding
description:
  Periplasmic serine protease, Do/DeqQ family; PFAM: Trypsin, PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; Belongs to the peptidase S1C family.


ensembl_gene_id: PMI02_01843
symbol: EJL31170.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain, Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family.


ensembl_gene_id: PMI02_01844
symbol: msrB
gene_biotype: protein_coding
description:
  PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: PMI02_01848
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: PMI02_01852
symbol: EJL31179.1
gene_biotype: protein_coding
description:
  PFAM: ACT domain, Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class, aspartate kinase; Belongs to the aspartokinase family.


ensembl_gene_id: PMI02_01853
symbol: ubiG
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: PMI02_01855
symbol: EJL31182.1
gene_biotype: protein_coding
description:
  Putative ATPase/kinase involved in NAD metabolism; TIGRFAM: nicotinamide-nucleotide adenylyltransferase, NadR type.


ensembl_gene_id: PMI02_01856
symbol: EJL31183.1
gene_biotype: protein_coding
description:
  PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC.


ensembl_gene_id: PMI02_01858
symbol: EJL31185.1
gene_biotype: protein_coding
description:
  Putative enzyme involved in biosynthesis of extracellular polysaccharides; PFAM: Antibiotic biosynthesis monooxygenase.


ensembl_gene_id: PMI02_01859
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: PMI02_01872
symbol: nhaA
gene_biotype: protein_coding
description:
  Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: PMI02_01876
symbol: EJL30930.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain containing protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: PMI02_01877
symbol: EJL30931.1
gene_biotype: protein_coding
description:
  PFAM: F subunit of K+-transporting ATPase (Potass_KdpF); TIGRFAM: K+-transporting ATPase, KdpF subunit.


ensembl_gene_id: PMI02_01878
symbol: kdpA
gene_biotype: protein_coding
description:
  K+-transporting ATPase, KdpA; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: PMI02_01879
symbol: kdpB
gene_biotype: protein_coding
description:
  K+-transporting ATPase, B subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: PMI02_01880
symbol: kdpC
gene_biotype: protein_coding
description:
  K+-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: PMI02_01881
symbol: EJL30935.1
gene_biotype: protein_coding
description:
  Osmosensitive K+ channel histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, GAF domain, Osmosensitive K+ channel His kinase sensor domain, Universal stress protein family, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI02_01894
symbol: EJL30948.1
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: PMI02_01895
symbol: EJL30949.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, ACT domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase.


ensembl_gene_id: PMI02_01909
symbol: EJL30843.1
gene_biotype: protein_coding
description:
  Zn-dependent dipeptidase, microsomal dipeptidase; PFAM: Membrane dipeptidase (Peptidase family M19).


ensembl_gene_id: PMI02_01912
symbol: EJL30846.1
gene_biotype: protein_coding
description:
  Putative ester cyclase; PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related.


ensembl_gene_id: PMI02_01920
symbol: EJL30854.1
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; TIGRFAM: sarcosine oxidase, beta subunit family, heterotetrameric form.


ensembl_gene_id: PMI02_01921
symbol: EJL30855.1
gene_biotype: protein_coding
description:
  PFAM: Sarcosine oxidase, delta subunit family; TIGRFAM: sarcosine oxidase, delta subunit family, heterotetrameric form.


ensembl_gene_id: PMI02_01922
symbol: EJL30856.1
gene_biotype: protein_coding
description:
  Sarcosine oxidase, alpha subunit family, heterotetrameric form; PFAM: Glycine cleavage T-protein C-terminal barrel domain, Aminomethyltransferase folate-binding domain, FAD binding domain; TIGRFAM: sarcosine oxidase, alpha subunit family, heterotetrameric form; Belongs to the GcvT family.


ensembl_gene_id: PMI02_01923
symbol: EJL30857.1
gene_biotype: protein_coding
description:
  PFAM: Sarcosine oxidase, gamma subunit family; TIGRFAM: sarcosine oxidase, gamma subunit family, heterotetrameric form.


ensembl_gene_id: PMI02_01931
symbol: EJL30865.1
gene_biotype: protein_coding
description:
  Glutamate synthase family protein; PFAM: GXGXG motif; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_01932
symbol: EJL30866.1
gene_biotype: protein_coding
description:
  Glutamate synthase family protein; PFAM: Glutamine amidotransferases class-II; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_01934
symbol: EJL30868.1
gene_biotype: protein_coding
description:
  5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: PMI02_01937
symbol: EJL30871.1
gene_biotype: protein_coding
description:
  Sarcosine oxidase, alpha subunit family, heterotetrameric form; PFAM: Glycine cleavage T-protein C-terminal barrel domain, Aminomethyltransferase folate-binding domain; TIGRFAM: sarcosine oxidase, alpha subunit family, heterotetrameric form; Belongs to the GcvT family.


ensembl_gene_id: PMI02_01940
symbol: EJL30874.1
gene_biotype: protein_coding
description:
  Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family.


ensembl_gene_id: PMI02_01941
symbol: EJL30875.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; TIGRFAM: glutathione-disulfide reductase, plant.


ensembl_gene_id: PMI02_01953
symbol: EJL30707.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase regulating C4-dicarboxylate transport system; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI02_01954
symbol: dctA
gene_biotype: protein_coding
description:
  Na+/H+ dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: PMI02_01962
symbol: EJL30628.1
gene_biotype: protein_coding
description:
  ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family.


ensembl_gene_id: PMI02_01965
symbol: EJL30631.1
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex, dehydrogenase (E1) component; PFAM: Transketolase, thiamine diphosphate binding domain.


ensembl_gene_id: PMI02_01967
symbol: EJL30633.1
gene_biotype: protein_coding
description:
  Membrane carboxypeptidase (penicillin-binding protein); PFAM: Penicillin binding protein transpeptidase domain, Transglycosylase.


ensembl_gene_id: PMI02_01972
symbol: EJL30638.1
gene_biotype: protein_coding
description:
  ATPase involved in chromosome partitioning; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: plasmid partitioning protein RepA.


ensembl_gene_id: PMI02_01975
symbol: EJL30641.1
gene_biotype: protein_coding
description:
  Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PMI02_01991
symbol: clpX
gene_biotype: protein_coding
description:
  Endopeptidase Clp ATP-binding regulatory subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: PMI02_01992
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: PMI02_01995
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: PMI02_01998
symbol: EJL30545.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type, signal peptide peptidase SppA, 67K type.


ensembl_gene_id: PMI02_02013
symbol: EJL30464.1
gene_biotype: protein_coding
description:
  PFAM: Thiolase, C-terminal domain, Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases, 3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PMI02_02016
symbol: EJL30467.1
gene_biotype: protein_coding
description:
  PFAM: IclR helix-turn-helix domain, Bacterial transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family.


ensembl_gene_id: PMI02_02031
symbol: rsmI
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: PMI02_02032
symbol: EJL30347.1
gene_biotype: protein_coding
description:
  Putative endonuclease related to Holliday junction resolvase; PFAM: Uncharacterized protein family UPF0102; Belongs to the UPF0102 family.


ensembl_gene_id: PMI02_02033
symbol: gshB
gene_biotype: protein_coding
description:
  PFAM: Prokaryotic glutathione synthetase, N-terminal domain, Prokaryotic glutathione synthetase, ATP-grasp domain; TIGRFAM: glutathione synthetase, prokaryotic; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: PMI02_02036
symbol: EJL30351.1
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: PMI02_02038
symbol: EJL30353.1
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: PMI02_02039
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: PMI02_02040
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat shock repressor HrcA protein; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: PMI02_02041
symbol: grpE
gene_biotype: protein_coding
description:
  Molecular chaperone GrpE (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle.  [...]


ensembl_gene_id: PMI02_02043
symbol: EJL30224.1
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase SerB; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like, phosphoserine phosphatase SerB.


ensembl_gene_id: PMI02_02045
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: PMI02_02046
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: PMI02_02047
symbol: EJL30228.1
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: PMI02_02048
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: PMI02_02049
symbol: EJL30230.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: PMI02_02050
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: PMI02_02054
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase, queuosine-34-forming; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of  [...]


ensembl_gene_id: PMI02_02057
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: PMI02_02059
symbol: trmJ
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: PMI02_02060
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: PMI02_02062
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: PMI02_02063
symbol: EJL30244.1
gene_biotype: protein_coding
description:
  PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B, sugar-phosphate isomerases, RpiB/LacA/LacB family.


ensembl_gene_id: PMI02_02070
symbol: EJL30167.1
gene_biotype: protein_coding
description:
  Serine protease, S9A family peptidase; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain, Prolyl oligopeptidase family.


ensembl_gene_id: PMI02_02072
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PMI02_02073
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: PMI02_02074
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: PMI02_02076
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase family protein; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: PMI02_02077
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: PMI02_02078
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: PMI02_02082
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: PMI02_02083
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18, bacterial type; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: PMI02_02084
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: PMI02_02085
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: PMI02_02086
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: PMI02_02087
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: PMI02_02088
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24, bacterial/organelle; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: PMI02_02089
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14, bacterial/organelle; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: PMI02_02090
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: PMI02_02091
symbol: rpmC
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: PMI02_02092
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16, bacterial/organelle; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: PMI02_02093
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3, bacterial type; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: PMI02_02094
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22, bacterial type; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: PMI02_02095
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19, bacterial/organelle; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: PMI02_02096
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2, bacterial/organellar; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: PMI02_02097
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: PMI02_02099
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3, bacterial; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: PMI02_02100
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10, bacterial/organelle; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: PMI02_02102
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor TU; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: PMI02_02103
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]


ensembl_gene_id: PMI02_02104
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7, bacterial/organelle; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: PMI02_02105
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12, bacterial/organelle; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: PMI02_02113
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: PMI02_02114
symbol: EJL30056.1
gene_biotype: protein_coding
description:
  Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family; Belongs to the Fur family.


ensembl_gene_id: PMI02_02117
symbol: purH
gene_biotype: protein_coding
description:
  PFAM: AICARFT/IMPCHase bienzyme, MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase.


ensembl_gene_id: PMI02_02119
symbol: EJL30061.1
gene_biotype: protein_coding
description:
  PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: PMI02_02124
symbol: EJL30066.1
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphate synthase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI02_02128
symbol: EJL30070.1
gene_biotype: protein_coding
description:
  Amidohydrolase; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain; TIGRFAM: amidohydrolase.


ensembl_gene_id: PMI02_02136
symbol: EJL30078.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF3458), Peptidase family M1; TIGRFAM: aminopeptidase N, Escherichia coli type.


ensembl_gene_id: PMI02_02137
symbol: EJL30079.1
gene_biotype: protein_coding
description:
  Hypothetical protein, YfiH family; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: PMI02_02138
symbol: EJL30080.1
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: PMI02_02139
symbol: EJL30081.1
gene_biotype: protein_coding
description:
  Cytochrome b subunit of the bc complex; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: PMI02_02141
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: PMI02_02149
symbol: EJL30090.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins.


ensembl_gene_id: PMI02_02158
symbol: EJL30099.1
gene_biotype: protein_coding
description:
  SOS response transcriptional repressor, RecA-mediated autopeptidase; PFAM: Helix-turn-helix, Peptidase S24-like.


ensembl_gene_id: PMI02_02161
symbol: EJL29624.1
gene_biotype: protein_coding
description:
  Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: PMI02_02162
symbol: ispDF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).


ensembl_gene_id: PMI02_02164
symbol: EJL29627.1
gene_biotype: protein_coding
description:
  PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain; Belongs to the CinA family.


ensembl_gene_id: PMI02_02165
symbol: EJL29628.1
gene_biotype: protein_coding
description:
  Oligoketide cyclase/lipid transport protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.


ensembl_gene_id: PMI02_02166
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoate synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: PMI02_02167
symbol: EJL29630.1
gene_biotype: protein_coding
description:
  Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: PMI02_02169
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: PMI02_02176
symbol: EJL29638.1
gene_biotype: protein_coding
description:
  Glutaredoxin, GrxC family; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: PMI02_02177
symbol: EJL29639.1
gene_biotype: protein_coding
description:
  Molecular chaperone (small heat shock protein); PFAM: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: PMI02_02180
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: PMI02_02181
symbol: EJL29643.1
gene_biotype: protein_coding
description:
  Protein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: PMI02_02182
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: PMI02_02186
symbol: EJL29648.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase.


ensembl_gene_id: PMI02_02187
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: PMI02_02189
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaC; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: PMI02_02190
symbol: EJL29652.1
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis enzyme; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: PMI02_02191
symbol: lexA
gene_biotype: protein_coding
description:
  SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: PMI02_02203
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: PMI02_02219
symbol: ccmA
gene_biotype: protein_coding
description:
  Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.


ensembl_gene_id: PMI02_02220
symbol: EJL29444.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in cytochrome c biogenesis, permease component; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.


ensembl_gene_id: PMI02_02226
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: PMI02_02228
symbol: EJL29452.1
gene_biotype: protein_coding
description:
  Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain, Penicillin-binding Protein dimerization domain.


ensembl_gene_id: PMI02_02229
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: PMI02_02230
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: PMI02_02231
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: PMI02_02232
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: PMI02_02234
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: PMI02_02238
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: PMI02_02239
symbol: ftsQ
gene_biotype: protein_coding
description:
  Cell division septal protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.


ensembl_gene_id: PMI02_02240
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: PMI02_02241
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: PMI02_02244
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: PMI02_02245
symbol: EJL29469.1
gene_biotype: protein_coding
description:
  FtsH-interacting integral membrane protein; PFAM: Uncharacterized protein family UPF0005; Belongs to the BI1 family.


ensembl_gene_id: PMI02_02248
symbol: obg
gene_biotype: protein_coding
description:
  Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: PMI02_02249
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: PMI02_02258
symbol: EJL29234.1
gene_biotype: protein_coding
description:
  CMP-2-keto-3-deoxyoctulosonic acid synthetase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase.


ensembl_gene_id: PMI02_02259
symbol: EJL29235.1
gene_biotype: protein_coding
description:
  KpsF/GutQ family protein; PFAM: CBS domain, SIS domain; TIGRFAM: KpsF/GutQ family protein; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: PMI02_02260
symbol: kdsA
gene_biotype: protein_coding
description:
  PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; Belongs to the KdsA family.


ensembl_gene_id: PMI02_02262
symbol: EJL29238.1
gene_biotype: protein_coding
description:
  dTDP-glucose pyrophosphorylase; PFAM: Nucleotidyl transferase; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_02265
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: PMI02_02266
symbol: EJL29242.1
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: PMI02_02268
symbol: EJL29244.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, GAF domain, His Kinase A (phosphoacceptor) domain, CHASE3 domain.


ensembl_gene_id: PMI02_02269
symbol: EJL29245.1
gene_biotype: protein_coding
description:
  Methylase of chemotaxis methyl-accepting protein; PFAM: CheR methyltransferase, SAM binding domain, CheR methyltransferase, all-alpha domain.


ensembl_gene_id: PMI02_02270
symbol: EJL29246.1
gene_biotype: protein_coding
description:
  Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; PFAM: CheB methylesterase.


ensembl_gene_id: PMI02_02278
symbol: EJL29254.1
gene_biotype: protein_coding
description:
  Fructose-2,6-bisphosphatase; PFAM: Phosphoglycerate mutase family; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: PMI02_02279
symbol: nnrD-2
gene_biotype: protein_coding
description:
  yjeF-like protein, hydroxyethylthiazole kinase-related protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.


ensembl_gene_id: PMI02_02285
symbol: EJL29261.1
gene_biotype: protein_coding
description:
  Membrane-associated lipoprotein involved in thiamine biosynthesis; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: PMI02_02291
symbol: EJL29267.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, GAF domain, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI02_02296
symbol: EJL29272.1
gene_biotype: protein_coding
description:
  PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family; Belongs to the RimK family.


ensembl_gene_id: PMI02_02300
symbol: EJL29276.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: PMI02_02303
symbol: EJL29279.1
gene_biotype: protein_coding
description:
  Cytidine deaminase, homotetrameric; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: PMI02_02307
symbol: rpmJ
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: PMI02_02309
symbol: EJL29285.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Domain of unknown function (DUF407), Domain of unknown function (DUF404).


ensembl_gene_id: PMI02_02311
symbol: EJL29287.1
gene_biotype: protein_coding
description:
  Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Bacterial transglutaminase-like N-terminal region, Transglutaminase-like superfamily.


ensembl_gene_id: PMI02_02321
symbol: EJL29297.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, beta-lactamase class C; PFAM: Beta-lactamase, Domain of unknown function (DUF3471).


ensembl_gene_id: PMI02_02334
symbol: EJL29310.1
gene_biotype: protein_coding
description:
  PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family.


ensembl_gene_id: PMI02_02337
symbol: EJL29313.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase; PFAM: Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Belongs to the TPP enzyme family.


ensembl_gene_id: PMI02_02340
symbol: EJL29316.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Putative peptidoglycan binding domain, L,D-transpeptidase catalytic domain.


ensembl_gene_id: PMI02_02350
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: PMI02_02351
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: PMI02_02352
symbol: rpmF
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: PMI02_02359
symbol: EJL29012.1
gene_biotype: protein_coding
description:
  Phosphoglycerate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: PMI02_02361
symbol: cysS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (C) catalytic domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI02_02362
symbol: EJL29015.1
gene_biotype: protein_coding
description:
  Cobaltochelatase, CobT subunit; PFAM: Cobalamin biosynthesis protein CobT VWA domain, Cobalamin biosynthesis protein CobT; TIGRFAM: cobaltochelatase, CobT subunit.


ensembl_gene_id: PMI02_02363
symbol: tal
gene_biotype: protein_coding
description:
  Fructose-6-phosphate aldolase, TalC/MipB family; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: PMI02_02365
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N'; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: PMI02_02367
symbol: EJL29020.1
gene_biotype: protein_coding
description:
  PFAM: Metal binding domain of Ada, 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase.


ensembl_gene_id: PMI02_02369
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase, F1 delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: PMI02_02370
symbol: atpA
gene_biotype: protein_coding
description:
  Proton translocating ATP synthase, F1 alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: PMI02_02371
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase, F1 gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: PMI02_02372
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase, F1 beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: PMI02_02373
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase, F1 epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: PMI02_02377
symbol: EJL29030.1
gene_biotype: protein_coding
description:
  Putative hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold, Epoxide hydrolase N terminus.


ensembl_gene_id: PMI02_02378
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: PMI02_02390
symbol: EJL28872.1
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component; PFAM: NMT1/THI5 like.


ensembl_gene_id: PMI02_02394
symbol: EJL28876.1
gene_biotype: protein_coding
description:
  Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain.


ensembl_gene_id: PMI02_02405
symbol: EJL28887.1
gene_biotype: protein_coding
description:
  Choline-sulfatase; PFAM: Choline sulfatase enzyme C terminal, Sulfatase; TIGRFAM: choline-sulfatase.


ensembl_gene_id: PMI02_02406
symbol: EJL28888.1
gene_biotype: protein_coding
description:
  Putative choline sulfate-utilization transcription factor; PFAM: LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: putative choline sulfate-utilization transcription factor; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI02_02413
symbol: EJL28895.1
gene_biotype: protein_coding
description:
  ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.


ensembl_gene_id: PMI02_02414
symbol: EJL28896.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for monomeric catechols; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI02_02425
symbol: EJL28907.1
gene_biotype: protein_coding
description:
  ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI02_02427
symbol: EJL28909.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter, Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PMI02_02428
symbol: EJL28910.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Sigma-54 interaction domain.


ensembl_gene_id: PMI02_02431
symbol: EJL28913.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region, ABC transporter.


ensembl_gene_id: PMI02_02432
symbol: EJL28914.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter, ABC transporter transmembrane region.


ensembl_gene_id: PMI02_02440
symbol: EJL28922.1
gene_biotype: protein_coding
description:
  Sugar phosphate permease; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.


ensembl_gene_id: PMI02_02457
symbol: EJL28783.1
gene_biotype: protein_coding
description:
  Type IV secretory pathway, VirD4 component; PFAM: Type IV secretion-system coupling protein DNA-binding domain.


ensembl_gene_id: PMI02_02460
symbol: EJL28736.1
gene_biotype: protein_coding
description:
  PFAM: Radical SAM superfamily; TIGRFAM: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit.


ensembl_gene_id: PMI02_02461
symbol: EJL28737.1
gene_biotype: protein_coding
description:
  LPPG:FO 2-phospho-L-lactate transferase; PFAM: Uncharacterized protein family UPF0052; TIGRFAM: LPPG:FO 2-phospho-L-lactate transferase.


ensembl_gene_id: PMI02_02469
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: PMI02_02475
symbol: EJL28751.1
gene_biotype: protein_coding
description:
  PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: PMI02_02476
symbol: EJL28752.1
gene_biotype: protein_coding
description:
  PFAM: Transketolase, thiamine diphosphate binding domain, Transketolase, C-terminal domain, Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast; Belongs to the transketolase family.


ensembl_gene_id: PMI02_02480
symbol: EJL28755.1
gene_biotype: protein_coding
description:
  5,10-methenyltetrahydrofolate synthetase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase.


ensembl_gene_id: PMI02_02484
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction resolvasome, DNA-binding subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: PMI02_02485
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase, RuvB subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: PMI02_02492
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: PMI02_02498
symbol: hisC
gene_biotype: protein_coding
description:
  PLP-dependent enzyme, histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: PMI02_02499
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: PMI02_02538
symbol: EJL28531.1
gene_biotype: protein_coding
description:
  Putative hydrolase, CocE/NonD family; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain, X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family.


ensembl_gene_id: PMI02_02546
symbol: EJL28539.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain, GGDEF domain, Bacterial signalling protein N terminal repeat, PAS fold; TIGRFAM: PAS domain S-box, diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI02_02554
symbol: EJL28547.1
gene_biotype: protein_coding
description:
  PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily, Multidrug resistance protein.


ensembl_gene_id: PMI02_02555
symbol: EJL28548.1
gene_biotype: protein_coding
description:
  PFAM: HlyD family secretion protein; TIGRFAM: efflux pump membrane protein (multidrug resistance protein A).


ensembl_gene_id: PMI02_02558
symbol: EJL28551.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF385); TIGRFAM: deazaflavin-dependent nitroreductase family protein.


ensembl_gene_id: PMI02_02566
symbol: argG
gene_biotype: protein_coding
description:
  PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: PMI02_02567
symbol: rlpA
gene_biotype: protein_coding
description:
  Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: PMI02_02571
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: PMI02_02577
symbol: EJL28570.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: PMI02_02578
symbol: EJL28571.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.


ensembl_gene_id: PMI02_02579
symbol: EJL28572.1
gene_biotype: protein_coding
description:
  Outer membrane cobalamin receptor protein; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor; TIGRFAM: TonB-dependent vitamin B12 receptor.


ensembl_gene_id: PMI02_02583
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.


ensembl_gene_id: PMI02_02585
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: PMI02_02586
symbol: EJL28578.1
gene_biotype: protein_coding
description:
  PFAM: Dehydrogenase E1 component, Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component.


ensembl_gene_id: PMI02_02587
symbol: EJL28579.1
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: PMI02_02591
symbol: EJL28291.1
gene_biotype: protein_coding
description:
  nucleotidyltransferase/DNA polymerase involved in DNA repair; PFAM: impB/mucB/samB family C-terminal.


ensembl_gene_id: PMI02_02593
symbol: EJL28293.1
gene_biotype: protein_coding
description:
  6-phosphogluconolactonase/glucosamine-6- phosphate isomerase/deaminase; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.


ensembl_gene_id: PMI02_02599
symbol: EJL28299.1
gene_biotype: protein_coding
description:
  UDP-forming alpha,alpha-trehalose-phosphate synthase; Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.


ensembl_gene_id: PMI02_02609
symbol: EJL28309.1
gene_biotype: protein_coding
description:
  Hypothetical protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein, CobQ/CobB/MinD/ParA nucleotide binding domain.


ensembl_gene_id: PMI02_02618
symbol: EJL28318.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.


ensembl_gene_id: PMI02_02632
symbol: EJL28332.1
gene_biotype: protein_coding
description:
  Broad specificity phosphatase of HAD superfamily; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family.


ensembl_gene_id: PMI02_02634
symbol: EJL28334.1
gene_biotype: protein_coding
description:
  Capsular exopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein, CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family.


ensembl_gene_id: PMI02_02644
symbol: EJL28344.1
gene_biotype: protein_coding
description:
  UDP-glucose-4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: PMI02_02658
symbol: EJL28236.1
gene_biotype: protein_coding
description:
  Fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly; PFAM: ABC transporter, ABC transporter transmembrane region.


ensembl_gene_id: PMI02_02660
symbol: EJL28237.1
gene_biotype: protein_coding
description:
  PFAM: Cobalamin synthesis protein cobW C-terminal domain, CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: cobalamin biosynthesis protein CobW.


ensembl_gene_id: PMI02_02662
symbol: EJL28239.1
gene_biotype: protein_coding
description:
  cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.


ensembl_gene_id: PMI02_02668
symbol: EJL28245.1
gene_biotype: protein_coding
description:
  Transketolase family protein,Transketolase-like protein; PFAM: Transketolase, C-terminal domain, Transketolase, pyrimidine binding domain.


ensembl_gene_id: PMI02_02672
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: PMI02_02677
symbol: EJL28009.1
gene_biotype: protein_coding
description:
  Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; PFAM: Phospholipase D Active site motif.


ensembl_gene_id: PMI02_02683
symbol: EJL27967.1
gene_biotype: protein_coding
description:
  Hypothetical protein, possibly involved in utilization of glycolate and propanediol; PFAM: Domain of unknown function (DUF336).


ensembl_gene_id: PMI02_02685
symbol: EJL27969.1
gene_biotype: protein_coding
description:
  PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PMI02_02699
symbol: EJL27983.1
gene_biotype: protein_coding
description:
  PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.


ensembl_gene_id: PMI02_02700
symbol: EJL27984.1
gene_biotype: protein_coding
description:
  ABC-type amino acid transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.


ensembl_gene_id: PMI02_02701
symbol: EJL27985.1
gene_biotype: protein_coding
description:
  Periplasmic component of amino acid ABC-type transporter/signal transduction system; PFAM: Bacterial extracellular solute-binding proteins, family 3.


ensembl_gene_id: PMI02_02702
symbol: EJL27986.1
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: cystathionine beta-lyase, bacterial.


ensembl_gene_id: PMI02_02707
symbol: EJL27821.1
gene_biotype: protein_coding
description:
  PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase.


ensembl_gene_id: PMI02_02708
symbol: EJL27822.1
gene_biotype: protein_coding
description:
  N-carbamoylputrescine amidase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase.


ensembl_gene_id: PMI02_02711
symbol: EJL27825.1
gene_biotype: protein_coding
description:
  PEP-CTERM putative exosortase interaction domain-containing protein; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM protein sorting domain, deltaproteobacterial GC-motif protein sorting domain.


ensembl_gene_id: PMI02_02712
symbol: EJL27826.1
gene_biotype: protein_coding
description:
  tRNA/rRNA cytosine-C5-methylase; PFAM: NOL1/NOP2/sun family, NusB family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: PMI02_02719
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: PMI02_02731
symbol: EJL27779.1
gene_biotype: protein_coding
description:
  PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA).


ensembl_gene_id: PMI02_02738
symbol: EJL27731.1
gene_biotype: protein_coding
description:
  FeS assembly SUF system protein; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein.


ensembl_gene_id: PMI02_02740
symbol: EJL27733.1
gene_biotype: protein_coding
description:
  PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.


ensembl_gene_id: PMI02_02743
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: PMI02_02753
symbol: EJL27746.1
gene_biotype: protein_coding
description:
  PFAM: Prokaryotic Cytochrome C oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV.


ensembl_gene_id: PMI02_02755
symbol: EJL27748.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: PMI02_02756
symbol: EJL27749.1
gene_biotype: protein_coding
description:
  PFAM: COX Aromatic Rich Motif, Cytochrome C oxidase subunit II, periplasmic domain; TIGRFAM: cytochrome o ubiquinol oxidase subunit II.


ensembl_gene_id: PMI02_02770
symbol: EJL27559.1
gene_biotype: protein_coding
description:
  PFAM: Phage conserved hypothetical protein BR0599, Uncharacterized conserved protein (DUF2163); TIGRFAM: phage conserved hypothetical protein BR0599.


ensembl_gene_id: PMI02_02771
symbol: EJL27560.1
gene_biotype: protein_coding
description:
  TIGR02217 family protein; PFAM: Conserved hypothetical protein 2217 (DUF2460); TIGRFAM: TIGR02217 family protein.


ensembl_gene_id: PMI02_02784
symbol: EJL27454.1
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; TIGRFAM: double-strand break repair helicase AddA, alphaproteobacterial type; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: PMI02_02788
symbol: argJ
gene_biotype: protein_coding
description:
  Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: PMI02_02790
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: PMI02_02791
symbol: EJL27461.1
gene_biotype: protein_coding
description:
  Putative autotransporter protein; PFAM: Autotransporter beta-domain; TIGRFAM: autotransporter-associated beta strand repeat.


ensembl_gene_id: PMI02_02801
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: PMI02_02805
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: PMI02_02806
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: PMI02_02810
symbol: EJL27477.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase, teichoic and lipoteichoic acid D-alanine esterification; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI02_02819
symbol: EJL27486.1
gene_biotype: protein_coding
description:
  PFAM: Ferrous iron transport protein B, Ferrous iron transport protein B C terminus, Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB, small GTP-binding protein domain.


ensembl_gene_id: PMI02_02820
symbol: EJL27487.1
gene_biotype: protein_coding
description:
  Single stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: PMI02_02822
symbol: EJL27489.1
gene_biotype: protein_coding
description:
  Putative metal-binding protein, possibly nucleic-acid binding protein; PFAM: Uncharacterized ACR, COG1399.


ensembl_gene_id: PMI02_02825
symbol: hslV
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: PMI02_02826
symbol: EJL27493.1
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.


ensembl_gene_id: PMI02_02831
symbol: nadK
gene_biotype: protein_coding
description:
  Putative sugar kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: PMI02_02833
symbol: mfd-2
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: PMI02_02836
symbol: EJL27502.1
gene_biotype: protein_coding
description:
  PFAM: Helicase conserved C-terminal domain, DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG.


ensembl_gene_id: PMI02_02839
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: PMI02_02842
symbol: EJL27507.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain), e3 binding domain, Biotin-requiring enzyme.


ensembl_gene_id: PMI02_02863
symbol: fliE
gene_biotype: protein_coding
description:
  PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE.


ensembl_gene_id: PMI02_02864
symbol: EJL27078.1
gene_biotype: protein_coding
description:
  Flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: PMI02_02867
symbol: EJL27081.1
gene_biotype: protein_coding
description:
  ATPase FliI/YscN family; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family.


ensembl_gene_id: PMI02_02870
symbol: EJL27084.1
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: PMI02_02872
symbol: EJL27086.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.


ensembl_gene_id: PMI02_02874
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: PMI02_02875
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: PMI02_02876
symbol: EJL27090.1
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: PMI02_02878
symbol: EJL27092.1
gene_biotype: protein_coding
description:
  Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: PMI02_02897
symbol: EJL26968.1
gene_biotype: protein_coding
description:
  AAA family ATPase, CDC48 subfamily; PFAM: Cell division protein 48 (CDC48), N-terminal domain, ATPase family associated with various cellular activities (AAA), Cell division protein 48 (CDC48), domain 2; TIGRFAM: AAA family ATPase, CDC48 subfamily; Belongs to the AAA ATPase family.


ensembl_gene_id: PMI02_02901
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: PMI02_02907
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: PMI02_02910
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: PMI02_02911
symbol: groS
gene_biotype: protein_coding
description:
  Co-chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: PMI02_02915
symbol: EJL26937.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, PAS fold.


ensembl_gene_id: PMI02_02916
symbol: EJL26938.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain, Bacterial regulatory protein, Fis family, Sigma-54 interaction domain; TIGRFAM: nitrogen regulation protein NR(I).


ensembl_gene_id: PMI02_02917
symbol: EJL26939.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; PFAM: HAMP domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, PAS fold.


ensembl_gene_id: PMI02_02919
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: PMI02_02920
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: PMI02_02921
symbol: EJL26943.1
gene_biotype: protein_coding
description:
  MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein.


ensembl_gene_id: PMI02_02925
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.


ensembl_gene_id: PMI02_02926
symbol: EJL26948.1
gene_biotype: protein_coding
description:
  DNA polymerase III, gamma/tau subunit; PFAM: ATPase family associated with various cellular activities (AAA).


ensembl_gene_id: PMI02_02927
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: PMI02_02928
symbol: EJL26950.1
gene_biotype: protein_coding
description:
  PFAM: D-alanyl-D-alanine carboxypeptidase, Penicillin-binding protein 5, C-terminal domain; Belongs to the peptidase S11 family.


ensembl_gene_id: PMI02_02935
symbol: EJL26829.1
gene_biotype: protein_coding
description:
  Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molydopterin dinucleotide binding domain.


ensembl_gene_id: PMI02_02938
symbol: EJL26832.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for ferrienterochelin and colicin; PFAM: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI02_02953
symbol: cynS
gene_biotype: protein_coding
description:
  Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.


ensembl_gene_id: PMI02_02959
symbol: EJL26740.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase-related, FMN binding protein; PFAM: Pyridoxamine 5'-phosphate oxidase.


ensembl_gene_id: PMI02_02960
symbol: EJL26741.1
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.


ensembl_gene_id: PMI02_02963
symbol: EJL26744.1
gene_biotype: protein_coding
description:
  Alkylated DNA repair protein; PFAM: 2OG-Fe(II) oxygenase superfamily; TIGRFAM: DNA alkylation damage repair protein AlkB.


ensembl_gene_id: PMI02_02965
symbol: EJL26620.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: Uncharacterized ACR, COG1678; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: PMI02_02972
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: PMI02_02980
symbol: EJL26595.1
gene_biotype: protein_coding
description:
  Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: ThiF family.


ensembl_gene_id: PMI02_02983
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit, proteobacterial; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: PMI02_02990
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: PMI02_03007
symbol: EJL26436.1
gene_biotype: protein_coding
description:
  TIGR03440 family protein; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: TIGR03440 family protein.


ensembl_gene_id: PMI02_03008
symbol: EJL26437.1
gene_biotype: protein_coding
description:
  Putative methyltransferase; PFAM: Uncharacterized conserved protein (DUF2260); TIGRFAM: probable methyltransferase.


ensembl_gene_id: PMI02_03010
symbol: EJL26439.1
gene_biotype: protein_coding
description:
  Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Cyclic nucleotide-binding domain.


ensembl_gene_id: PMI02_03023
symbol: pyrB
gene_biotype: protein_coding
description:
  PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain, Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: PMI02_03024
symbol: EJL26313.1
gene_biotype: protein_coding
description:
  Dihydroorotase-like cyclic amidohydrolase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type.


ensembl_gene_id: PMI02_03030
symbol: EJL26319.1
gene_biotype: protein_coding
description:
  Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: PMI02_03032
symbol: der
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: PMI02_03037
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: PMI02_03038
symbol: surE
gene_biotype: protein_coding
description:
  5''/3''-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: PMI02_03042
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: PMI02_03046
symbol: EJL26332.1
gene_biotype: protein_coding
description:
  Putative nuleotide-utilizing enzyme, moeA; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain.


ensembl_gene_id: PMI02_03049
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: PMI02_03050
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: PMI02_03052
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: PMI02_03053
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: PMI02_03056
symbol: aat
gene_biotype: protein_coding
description:
  leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: PMI02_03057
symbol: EJL26342.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase 17.2 kD subunit; PFAM: NADH ubiquinone oxidoreductase subunit NDUFA12.


ensembl_gene_id: PMI02_03071
symbol: EJL26264.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily.


ensembl_gene_id: PMI02_03077
symbol: EJL26225.1
gene_biotype: protein_coding
description:
  Chemotaxis protein histidine kinase-like protein; PFAM: CheW-like domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Signal transducing histidine kinase, homodimeric domain, Hpt domain.


ensembl_gene_id: PMI02_03079
symbol: cheB
gene_biotype: protein_coding
description:
  Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: PMI02_03085
symbol: EJL26129.1
gene_biotype: protein_coding
description:
  Actin-like ATPase involved in cell morphogenesis; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family.


ensembl_gene_id: PMI02_03086
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: PMI02_03091
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: PMI02_03093
symbol: EJL26137.1
gene_biotype: protein_coding
description:
  PEP-CTERM putative exosortase interaction domain-containing protein; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM protein sorting domain.


ensembl_gene_id: PMI02_03094
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: PMI02_03095
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: PMI02_03098
symbol: glyQ
gene_biotype: protein_coding
description:
  PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit.


ensembl_gene_id: PMI02_03099
symbol: glyS
gene_biotype: protein_coding
description:
  PFAM: Glycyl-tRNA synthetase beta subunit, DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit.


ensembl_gene_id: PMI02_03100
symbol: EJL26144.1
gene_biotype: protein_coding
description:
  Pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, TIM barrel domain, PEP-utilising enzyme, mobile domain, Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PMI02_03102
symbol: EJL26146.1
gene_biotype: protein_coding
description:
  Putative amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.


ensembl_gene_id: PMI02_03103
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: PMI02_03105
symbol: EJL26149.1
gene_biotype: protein_coding
description:
  Cysteine synthase A; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A, cysteine synthases; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: PMI02_03119
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: PMI02_03122
symbol: EJL26059.1
gene_biotype: protein_coding
description:
  Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein.


ensembl_gene_id: PMI02_03125
symbol: rpmH
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: PMI02_03126
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: PMI02_03127
symbol: EJL26064.1
gene_biotype: protein_coding
description:
  YidD-like protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: PMI02_03130
symbol: EJL25942.1
gene_biotype: protein_coding
description:
  MAF protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: PMI02_03133
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: PMI02_03138
symbol: EJL25950.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.


ensembl_gene_id: PMI02_03145
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: PMI02_03146
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: PMI02_03149
symbol: EJL25780.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: PMI02_03161
symbol: rlmJ
gene_biotype: protein_coding
description:
  Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA.


ensembl_gene_id: PMI02_03168
symbol: EJL25739.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_03169
symbol: EJL25740.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: LysR substrate binding domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_03186
symbol: EJL25588.1
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: PMI02_03213
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: PMI02_03215
symbol: EJL25553.1
gene_biotype: protein_coding
description:
  PEP-CTERM-box response regulator transcription factor; PFAM: Response regulator receiver domain, Bacterial regulatory protein, Fis family, Sigma-54 interaction domain; TIGRFAM: PEP-CTERM-box response regulator transcription factor.


ensembl_gene_id: PMI02_03216
symbol: EJL25554.1
gene_biotype: protein_coding
description:
  Putative PEP-CTERM system histidine kinase; PFAM: GAF domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: putative PEP-CTERM system histidine kinase.


ensembl_gene_id: PMI02_03223
symbol: EJL25436.1
gene_biotype: protein_coding
description:
  PFAM: Chorismate mutase type II; TIGRFAM: monofunctional chorismate mutase, alpha proteobacterial type.


ensembl_gene_id: PMI02_03248
symbol: EJL25141.1
gene_biotype: protein_coding
description:
  PFAM: ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family.


ensembl_gene_id: PMI02_03250
symbol: EJL25126.1
gene_biotype: protein_coding
description:
  UDP-glucose pyrophosphorylase; PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase.


ensembl_gene_id: PMI02_03347
symbol: EJL25027.1
gene_biotype: protein_coding
description:
  Thioredoxin-dependent phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: PMI02_03349
symbol: EJL25029.1
gene_biotype: protein_coding
description:
  Sulfite reductase, beta subunit (hemoprotein); PFAM: Nitrite and sulphite reductase 4Fe-4S domain, Nitrite/Sulfite reductase ferredoxin-like half domain.


ensembl_gene_id: PMI02_03356
symbol: EJL25036.1
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: cystathionine beta-lyase, bacterial.


ensembl_gene_id: PMI02_03359
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: PMI02_03368
symbol: EJL25048.1
gene_biotype: protein_coding
description:
  Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: PMI02_03369
symbol: glgB
gene_biotype: protein_coding
description:
  Alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: PMI02_03370
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: PMI02_03379
symbol: EJL24952.1
gene_biotype: protein_coding
description:
  Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily, Bacterial transglutaminase-like N-terminal region.


ensembl_gene_id: PMI02_03396
symbol: EJL24969.1
gene_biotype: protein_coding
description:
  TIGRFAM: proline-specific peptidases, Bacillus coagulans-type subfamily; Belongs to the peptidase S33 family.


ensembl_gene_id: PMI02_03398
symbol: EJL24971.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily, Multidrug resistance protein.


ensembl_gene_id: PMI02_03405
symbol: yacG
gene_biotype: protein_coding
description:
  Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.


ensembl_gene_id: PMI02_03428
symbol: EJL24753.1
gene_biotype: protein_coding
description:
  Putative Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain, Insulinase (Peptidase family M16); Belongs to the peptidase M16 family.


ensembl_gene_id: PMI02_03430
symbol: EJL24755.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, 2-phosphoglycolate phosphatase, prokaryotic.


ensembl_gene_id: PMI02_03431
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: PMI02_03436
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: PMI02_03439
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: PMI02_03440
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS protein; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought [...]


ensembl_gene_id: PMI02_03448
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein, N-terminal domain, AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase.


ensembl_gene_id: PMI02_03449
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: PMI02_03452
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: PMI02_03454
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: PMI02_03455
symbol: lptD
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.


ensembl_gene_id: PMI02_03457
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: PMI02_03458
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: PMI02_03460
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: PMI02_03462
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: PMI02_03468
symbol: EJL24793.1
gene_biotype: protein_coding
description:
  PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.


ensembl_gene_id: PMI02_03469
symbol: EJL24794.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_03484
symbol: EJL24809.1
gene_biotype: protein_coding
description:
  Putative acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_03487
symbol: EJL24812.1
gene_biotype: protein_coding
description:
  Putative nucleic-acid-binding protein containing a Zn-ribbon; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N), DUF35 OB-fold domain.


ensembl_gene_id: PMI02_03497
symbol: EJL24822.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI02_03501
symbol: EJL24826.1
gene_biotype: protein_coding
description:
  PFAM: Mur ligase family, glutamate ligase domain, Mur ligase family, catalytic domain, Mur ligase middle domain.


ensembl_gene_id: PMI02_03503
symbol: EJL24828.1
gene_biotype: protein_coding
description:
  Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: PMI02_03509
symbol: EJL24834.1
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein FlgK; PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PMI02_03511
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: PMI02_03512
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: PMI02_03513
symbol: EJL24838.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgG; PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins, flagellar basal-body rod protein FlgG, Gram-negative bacteria.


ensembl_gene_id: PMI02_03515
symbol: EJL24840.1
gene_biotype: protein_coding
description:
  PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins.


ensembl_gene_id: PMI02_03517
symbol: EJL24842.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgC; PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PMI02_03518
symbol: EJL24843.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: PMI02_03526
symbol: EJL24851.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4, Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family, RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: PMI02_03528
symbol: EJL24853.1
gene_biotype: protein_coding
description:
  Putative Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain, Insulinase (Peptidase family M16).


ensembl_gene_id: PMI02_03534
symbol: EJL24859.1
gene_biotype: protein_coding
description:
  uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: PMI02_03535
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: PMI02_03536
symbol: tsaD
gene_biotype: protein_coding
description:
  Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: PMI02_03537
symbol: EJL24862.1
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus.


ensembl_gene_id: PMI02_03538
symbol: EJL24613.1
gene_biotype: protein_coding
description:
  Amidohydrolase, imidazolonepropionase; PFAM: Amidohydrolase family; overlaps another CDS with the same product name.


ensembl_gene_id: PMI02_03541
symbol: EJL24616.1
gene_biotype: protein_coding
description:
  Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: PMI02_03548
symbol: queG
gene_biotype: protein_coding
description:
  Putative Fe-S protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: PMI02_03557
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: PMI02_03563
symbol: EJL24637.1
gene_biotype: protein_coding
description:
  Peptidylarginine deiminase-like enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.


ensembl_gene_id: PMI02_03565
symbol: EJL24639.1
gene_biotype: protein_coding
description:
  Glutamine synthetase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transducti [...]


ensembl_gene_id: PMI02_03570
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: PMI02_03572
symbol: EJL24646.1
gene_biotype: protein_coding
description:
  Flagellar biosynthesis pathway, component FliQ; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ.


ensembl_gene_id: PMI02_03574
symbol: EJL24648.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function (DUF1078), Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PMI02_03575
symbol: EJL24649.1
gene_biotype: protein_coding
description:
  Flagellar motor switch/type III secretory pathway protein; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN.


ensembl_gene_id: PMI02_03586
symbol: EJL24660.1
gene_biotype: protein_coding
description:
  Flagellar protein export ATPase FliI; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family, flagellar protein export ATPase FliI.


ensembl_gene_id: PMI02_03588
symbol: EJL24662.1
gene_biotype: protein_coding
description:
  PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078), Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins.


ensembl_gene_id: PMI02_03590
symbol: EJL24664.1
gene_biotype: protein_coding
description:
  Flagellin/flagellar hook associated protein; PFAM: Bacterial flagellin N-terminal helical region, Bacterial flagellin C-terminal helical region.


ensembl_gene_id: PMI02_03596
symbol: EJL24670.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: PMI02_03598
symbol: EJL24672.1
gene_biotype: protein_coding
description:
  Flagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078), Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins.


ensembl_gene_id: PMI02_03600
symbol: EJL24674.1
gene_biotype: protein_coding
description:
  Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.


ensembl_gene_id: PMI02_03604
symbol: EJL24678.1
gene_biotype: protein_coding
description:
  Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: PMI02_03606
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: PMI02_03607
symbol: EJL24681.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Bacterial regulatory protein, Fis family.


ensembl_gene_id: PMI02_03611
symbol: EJL24685.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: PMI02_03620
symbol: EJL24694.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type.


ensembl_gene_id: PMI02_03623
symbol: EJL24497.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: benzoate transport.


ensembl_gene_id: PMI02_03635
symbol: EJL24508.1
gene_biotype: protein_coding
description:
  8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.


ensembl_gene_id: PMI02_03637
symbol: EJL24510.1
gene_biotype: protein_coding
description:
  Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain; TIGRFAM: biotin biosynthesis protein BioC.


ensembl_gene_id: PMI02_03638
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: PMI02_03639
symbol: EJL24512.1
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PMI02_03645
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: PMI02_03647
symbol: EJL24520.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine synthetase, catalytic domain, Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.


ensembl_gene_id: PMI02_03651
symbol: bpt
gene_biotype: protein_coding
description:
  Putative arginyl-tRNA:protein arginylyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: PMI02_03652
symbol: EJL24525.1
gene_biotype: protein_coding
description:
  Threonine dehydratase, medium form; PFAM: ACT domain, Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine dehydratase, medium form.


ensembl_gene_id: PMI02_03655
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine targeting protein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: PMI02_03656
symbol: tatB
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: PMI02_03657
symbol: tatA
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: PMI02_03658
symbol: EJL24531.1
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: PMI02_03659
symbol: EJL24532.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: PMI02_03663
symbol: EJL24536.1
gene_biotype: protein_coding
description:
  Hypothetical protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.


ensembl_gene_id: PMI02_03665
symbol: EJL24414.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein, CofH subfamily; PFAM: Radical SAM superfamily; TIGRFAM: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit, radical SAM domain protein, CofH subfamily.


ensembl_gene_id: PMI02_03670
symbol: EJL24419.1
gene_biotype: protein_coding
description:
  Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase.


ensembl_gene_id: PMI02_03673
symbol: cysD
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: sulfate adenylyltransferase, small subunit.


ensembl_gene_id: PMI02_03674
symbol: cysC
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: PMI02_03677
symbol: EJL24426.1
gene_biotype: protein_coding
description:
  Putative quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: putative quinone oxidoreductase, YhdH/YhfP family.


ensembl_gene_id: PMI02_03688
symbol: EJL24437.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Response regulator receiver domain, HWE histidine kinase, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI02_03697
symbol: EJL24446.1
gene_biotype: protein_coding
description:
  ABC-type molybdate transport system, ATPase component; PFAM: ABC transporter; TIGRFAM: molybdenum ABC transporter, ATP-binding protein.


ensembl_gene_id: PMI02_03698
symbol: EJL24447.1
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PMI02_03699
symbol: EJL24448.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein.


ensembl_gene_id: PMI02_03700
symbol: EJL24449.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain.


ensembl_gene_id: PMI02_03715
symbol: EJL24213.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory proteins, gntR family, UTRA domain; TIGRFAM: histidine utilization repressor, proteobacterial.


ensembl_gene_id: PMI02_03716
symbol: EJL24214.1
gene_biotype: protein_coding
description:
  Histidine utilization repressor; PFAM: Bacterial regulatory proteins, gntR family, UTRA domain; TIGRFAM: histidine utilization repressor, proteobacterial.


ensembl_gene_id: PMI02_03739
symbol: EJL24237.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: PMI02_03746
symbol: EJL24244.1
gene_biotype: protein_coding
description:
  Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Sigma-70, region 4.


ensembl_gene_id: PMI02_03800
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: PMI02_03803
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: PMI02_03804
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: PMI02_03806
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: PMI02_03807
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: PMI02_03816
symbol: EJL24109.1
gene_biotype: protein_coding
description:
  Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: PMI02_03823
symbol: EJL24116.1
gene_biotype: protein_coding
description:
  Putative SAM-dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase; Belongs to the methyltransferase superfamily.


ensembl_gene_id: PMI02_03824
symbol: EJL24117.1
gene_biotype: protein_coding
description:
  FolB domain protein; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase, FolB domain.


ensembl_gene_id: PMI02_03826
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: PMI02_03830
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: PMI02_03831
symbol: rpmA
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: PMI02_03834
symbol: EJL24127.1
gene_biotype: protein_coding
description:
  Folate-binding protein YgfZ; PFAM: Aminomethyltransferase folate-binding domain; TIGRFAM: folate-binding protein YgfZ.


ensembl_gene_id: PMI02_03844
symbol: EJL24137.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinylglutamic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PMI02_03852
symbol: EJL24145.1
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase, plant type; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.


ensembl_gene_id: PMI02_03853
symbol: EJL24146.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: PMI02_03854
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate polyprenyl transferase, proteobacterial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: PMI02_03856
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: PMI02_03857
symbol: EJL24150.1
gene_biotype: protein_coding
description:
  PFAM: short chain dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI02_03858
symbol: EJL24151.1
gene_biotype: protein_coding
description:
  Putative esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin phospholipase, Patatin-like phospholipase.


ensembl_gene_id: PMI02_03859
symbol: glnD
gene_biotype: protein_coding
description:
  (protein-PII) uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.


ensembl_gene_id: PMI02_03860
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: PMI02_03864
symbol: EJL24157.1
gene_biotype: protein_coding
description:
  5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: 5'-nucleotidase, C-terminal domain, Calcineurin-like phosphoesterase; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: PMI02_03893
symbol: EJL23973.1
gene_biotype: protein_coding
description:
  PFAM: Phage QLRG family, putative DNA packaging; TIGRFAM: phage conserved hypothetical protein, phiE125 gp8 family.


ensembl_gene_id: PMI02_03905
symbol: EJL23984.1
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase, RelA/SpoT family; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: PMI02_03907
symbol: rutB
gene_biotype: protein_coding
description:
  Pyrimidine utilization protein B; In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2; Belongs to the isochorismatase family. RutB subfamily.


ensembl_gene_id: PMI02_03908
symbol: EJL23987.1
gene_biotype: protein_coding
description:
  Pyrimidine utilization protein C; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative, pyrimidine utilization protein C; Belongs to the RutC family.


ensembl_gene_id: PMI02_03909
symbol: rutD
gene_biotype: protein_coding
description:
  Pyrimidine utilization protein D; May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation. Belongs to the AB hydrolase superfamily. Hydrolase RutD family.


ensembl_gene_id: PMI02_03915
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: PMI02_03919
symbol: pal
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PMI02_03920
symbol: tolB
gene_biotype: protein_coding
description:
  Tol-pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PMI02_03924
symbol: EJL24003.1
gene_biotype: protein_coding
description:
  PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family, tol-pal system-associated acyl-CoA thioesterase.


ensembl_gene_id: PMI02_03928
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: PMI02_03930
symbol: hisA
gene_biotype: protein_coding
description:
  PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.


ensembl_gene_id: PMI02_03931
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: PMI02_03937
symbol: dapD
gene_biotype: protein_coding
description:
  PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: PMI02_03943
symbol: EJL24022.1
gene_biotype: protein_coding
description:
  Putative oxidoreductase; PFAM: Luciferase-like monooxygenase; TIGRFAM: probable F420-dependent oxidoreductase, MSMEG_4141 family.


ensembl_gene_id: PMI02_03948
symbol: EJL24027.1
gene_biotype: protein_coding
description:
  Putative Zn-ribbon-containing protein involved in phosphonate metabolism; PFAM: PhnA protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA.


ensembl_gene_id: PMI02_03962
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: PMI02_03972
symbol: lolD
gene_biotype: protein_coding
description:
  ABC-type antimicrobial peptide transport system, ATPase component; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.


ensembl_gene_id: PMI02_03973
symbol: EJL23841.1
gene_biotype: protein_coding
description:
  PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.


ensembl_gene_id: PMI02_03976
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: PMI02_03983
symbol: EJL23851.1
gene_biotype: protein_coding
description:
  2-oxoacid:ferredoxin oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.


ensembl_gene_id: PMI02_03985
symbol: EJL23751.1
gene_biotype: protein_coding
description:
  2-oxoacid:acceptor oxidoreductase, alpha subunit; PFAM: domain, Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit.


ensembl_gene_id: PMI02_03986
symbol: rppH
gene_biotype: protein_coding
description:
  NTP pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: PMI02_03988
symbol: EJL23754.1
gene_biotype: protein_coding
description:
  tRNA/rRNA cytosine-C5-methylase; PFAM: NOL1/NOP2/sun family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: PMI02_03989
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5''-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: PMI02_03994
symbol: EJL23760.1
gene_biotype: protein_coding
description:
  Putative DNA metabolism protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: probable DNA metabolism protein, uracil-DNA glycosylase, family 4, uracil-DNA glycosylase family domain.


ensembl_gene_id: PMI02_03995
symbol: ku
gene_biotype: protein_coding
description:
  Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: PMI02_03997
symbol: EJL23763.1
gene_biotype: protein_coding
description:
  DNA ligase D; PFAM: Eukaryotic and archaeal DNA primase small subunit, ATP dependent DNA ligase domain, ATP dependent DNA ligase C terminal region; TIGRFAM: DNA polymerase LigD, ligase domain, DNA ligase D, DNA polymerase LigD, polymerase domain, DNA ligase D, 3'-phosphoesterase domain.


ensembl_gene_id: PMI02_04013
symbol: EJL23779.1
gene_biotype: protein_coding
description:
  PFAM: domain, FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup, succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: PMI02_04014
symbol: EJL23780.1
gene_biotype: protein_coding
description:
  PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein.


ensembl_gene_id: PMI02_04015
symbol: EJL23781.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit.


ensembl_gene_id: PMI02_04020
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: PMI02_04025
symbol: bamD
gene_biotype: protein_coding
description:
  Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: PMI02_04026
symbol: EJL23792.1
gene_biotype: protein_coding
description:
  Kef-type K+ transport system, membrane component; PFAM: TrkA-N domain, Sodium/hydrogen exchanger family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: PMI02_04054
symbol: EJL23711.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI02_04057
symbol: ctaG
gene_biotype: protein_coding
description:
  Cytochrome oxidase assembly factor; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.


ensembl_gene_id: PMI02_04059
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: PMI02_04060
symbol: EJL23717.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: PMI02_04061
symbol: EJL23718.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: PMI02_04062
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: PMI02_04063
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxine 5''-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: PMI02_04064
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: PMI02_04068
symbol: EJL23725.1
gene_biotype: protein_coding
description:
  RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: PMI02_04073
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: PMI02_04079
symbol: EJL23736.1
gene_biotype: protein_coding
description:
  Rieske (2Fe-2S) domain-containing protein; PFAM: Ring hydroxylating alpha subunit (catalytic domain), Rieske [2Fe-2S] domain.


ensembl_gene_id: PMI02_04098
symbol: EJL23604.1
gene_biotype: protein_coding
description:
  Putative stress-responsive transcriptional regulator; PFAM: PspC domain; TIGRFAM: phage shock protein C.


ensembl_gene_id: PMI02_04101
symbol: EJL23607.1
gene_biotype: protein_coding
description:
  Psp operon transcriptional activator PspF; PFAM: Bacterial regulatory protein, Fis family, Sigma-54 interaction domain; TIGRFAM: psp operon transcriptional activator PspF.


ensembl_gene_id: PMI02_04103
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: PMI02_04104
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: PMI02_04105
symbol: EJL23611.1
gene_biotype: protein_coding
description:
  Putative nucleic-acid-binding protein implicated in transcription termination; PFAM: Protein of unknown function (DUF448).


ensembl_gene_id: PMI02_04106
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: PMI02_04110
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: PMI02_04115
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine 55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: PMI02_04116
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: PMI02_04117
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: PMI02_04126
symbol: EJL23631.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, GAF domain, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI02_04136
symbol: EJL23518.1
gene_biotype: protein_coding
description:
  Methyltransferase family protein; PFAM: Methyltransferase domain, C-methyltransferase, Hypothetical methyltransferase.


ensembl_gene_id: PMI02_04140
symbol: EJL23522.1
gene_biotype: protein_coding
description:
  Micrococcal nuclease-like nuclease; PFAM: Excalibur calcium-binding domain, Staphylococcal nuclease.


ensembl_gene_id: PMI02_04141
symbol: EJL23523.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized ACR, COG2135; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: PMI02_04148
symbol: EJL23530.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III, exodeoxyribonuclease III (xth).


ensembl_gene_id: PMI02_04156
symbol: EJL23465.1
gene_biotype: protein_coding
description:
  Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: Aminotransferase class-V.


ensembl_gene_id: PMI02_04157
symbol: EJL23466.1
gene_biotype: protein_coding
description:
  Amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain; TIGRFAM: amidase, hydantoinase/carbamoylase family.


ensembl_gene_id: PMI02_04163
symbol: EJL23472.1
gene_biotype: protein_coding
description:
  PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PMI02_04164
symbol: EJL23473.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, ATPase component; PFAM: ABC transporter, Branched-chain amino acid ATP-binding cassette transporter, Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PMI02_04179
symbol: EJL23397.1
gene_biotype: protein_coding
description:
  PFAM: Phosphopantetheine attachment site, Luciferase-like monooxygenase, Formyl transferase, AMP-binding enzyme, Formyl transferase, C-terminal domain; TIGRFAM: natural product biosynthesis luciferase-like monooxygenase domain.


ensembl_gene_id: PMI02_04180
symbol: EJL23398.1
gene_biotype: protein_coding
description:
  Polyketide synthase family protein; PFAM: Thioesterase domain, Acyl transferase domain, Phosphopantetheine attachment site, KR domain, Beta-ketoacyl synthase, N-terminal domain, Beta-ketoacyl synthase, C-terminal domain.


ensembl_gene_id: PMI02_04182
symbol: EJL23400.1
gene_biotype: protein_coding
description:
  PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantetheine--protein transferase domain; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: PMI02_04185
symbol: EJL23403.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: PMI02_04186
symbol: EJL23404.1
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: PMI02_04187
symbol: EJL23405.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: PMI02_04188
symbol: EJL23406.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase, short form; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: PMI02_04193
symbol: hpf
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: PMI02_04194
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: PMI02_04195
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: PMI02_04196
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: PMI02_04197
symbol: EJL23415.1
gene_biotype: protein_coding
description:
  Nucleotide-binding protein implicated in inhibition of septum formation; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: PMI02_04198
symbol: EJL23416.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: PMI02_04199
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: PMI02_04200
symbol: EJL23418.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Uncharacterized protein family (UPF0093); TIGRFAM: TIGR00701 family protein.


ensembl_gene_id: PMI02_04202
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: PMI02_04207
symbol: mnmE
gene_biotype: protein_coding
description:
  Small GTP-binding protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: PMI02_04208
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: PMI02_04209
symbol: rsmG
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: PMI02_04211
symbol: EJL23429.1
gene_biotype: protein_coding
description:
  ParB-like partition protein; PFAM: ParB-like nuclease domain, KorB domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family.


ensembl_gene_id: PMI02_04216
symbol: EJL23434.1
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: PMI02_04219
symbol: EJL23437.1
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: PMI02_04224
symbol: EJL23326.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: PMI02_04227
symbol: EJL23329.1
gene_biotype: protein_coding
description:
  Hypothetical protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein.


ensembl_gene_id: PMI02_04242
symbol: EJL23344.1
gene_biotype: protein_coding
description:
  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: PMI02_04271
symbol: EJL23190.1
gene_biotype: protein_coding
description:
  Putative phage tail region protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.


ensembl_gene_id: PMI02_04289
symbol: EJL23208.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, DbpA RNA binding domain, DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: PMI02_04293
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: PMI02_04294
symbol: EJL23213.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.


ensembl_gene_id: PMI02_04297
symbol: trmFO
gene_biotype: protein_coding
description:
  tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: PMI02_04300
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: PMI02_04303
symbol: carA
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain, Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.


ensembl_gene_id: PMI02_04306
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain, MGS-like domain, Carbamoyl-phosphate synthetase large chain, oligomerisation domain, Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.


ensembl_gene_id: PMI02_04307
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: PMI02_04313
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: PMI02_04317
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: PMI02_04318
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: PMI02_04321
symbol: EJL23240.1
gene_biotype: protein_coding
description:
  PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus, Cytochrome c, Pyrrolo-quinoline quinone coenzyme C-terminus, PQQ enzyme repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family.


ensembl_gene_id: PMI02_04330
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: PMI02_04331
symbol: EJL23248.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain, Penicillin-binding Protein dimerization domain; TIGRFAM: penicillin-binding protein 2.


ensembl_gene_id: PMI02_04344
symbol: EJL23099.1
gene_biotype: protein_coding
description:
  Bacteriophytochrome (light-regulated signal transduction histidine kinase); PFAM: GAF domain, HWE histidine kinase, Phytochrome region, PAS fold.


ensembl_gene_id: PMI02_04362
symbol: EJL23050.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with HTH domain and aminotransferase domain; PFAM: Aminotransferase class I and II, Bacterial regulatory proteins, gntR family.


ensembl_gene_id: PMI02_04367
symbol: EJL22945.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain, Phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: PMI02_04376
symbol: EJL22919.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; PFAM: Phage integrase family; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.


ensembl_gene_id: PMI02_04378
symbol: EJL22921.1
gene_biotype: protein_coding
description:
  Helicase, type I site-specific restriction-modification system restriction subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N), Helicase conserved C-terminal domain, Domain of unknown function (DUF3559), Type III restriction enzyme, res subunit.


ensembl_gene_id: PMI02_04379
symbol: EJL22922.1
gene_biotype: protein_coding
description:
  Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase, HsdM N-terminal domain.


ensembl_gene_id: PMI02_04412
symbol: EJL22827.1
gene_biotype: protein_coding
description:
  Type IV secretory pathway, VirD4 component; PFAM: Type IV secretion-system coupling protein DNA-binding domain; TIGRFAM: type IV conjugative transfer system coupling protein TraD.


ensembl_gene_id: PMI02_04451
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: PMI02_04454
symbol: tal-2
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.


ensembl_gene_id: PMI02_04455
symbol: EJL22741.1
gene_biotype: protein_coding
description:
  PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase, 6-phosphogluconate dehydrogenase, C-terminal domain; TIGRFAM: 6-phosphogluconate dehydrogenase (decarboxylating).


ensembl_gene_id: PMI02_04457
symbol: EJL22743.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily, HAD-superfamily hydrolase, subfamily IIB.


ensembl_gene_id: PMI02_04459
symbol: EJL22745.1
gene_biotype: protein_coding
description:
  Threonine dehydratase; PFAM: ACT domain, Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine dehydratase, medium form.


ensembl_gene_id: PMI02_04460
symbol: EJL22746.1
gene_biotype: protein_coding
description:
  1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family.


ensembl_gene_id: PMI02_04468
symbol: EJL22754.1
gene_biotype: protein_coding
description:
  PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase.


ensembl_gene_id: PMI02_04472
symbol: EJL22644.1
gene_biotype: protein_coding
description:
  ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain, Helicase associated domain (HA2), ATP-dependent helicase C-terminal, DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB.


ensembl_gene_id: PMI02_04475
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: PMI02_04476
symbol: EJL22647.1
gene_biotype: protein_coding
description:
  DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: PMI02_04477
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: PMI02_04486
symbol: EJL22657.1
gene_biotype: protein_coding
description:
  PFAM: GAF domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI02_04487
symbol: amn
gene_biotype: protein_coding
description:
  AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.


ensembl_gene_id: PMI02_04490
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: PMI02_04505
symbol: EJL22609.1
gene_biotype: protein_coding
description:
  Sulfite reductase, alpha subunit (flavoprotein); PFAM: Flavodoxin, Oxidoreductase NAD-binding domain.


ensembl_gene_id: PMI02_04507
symbol: EJL22611.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with HTH domain and aminotransferase domain; PFAM: Bacterial regulatory proteins, gntR family, Aminotransferase class I and II.


ensembl_gene_id: PMI02_04649
symbol: EJL22418.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial protein of unknown function (Gcw_chp); TIGRFAM: conserved hypothetical protein, proteobacterial.


ensembl_gene_id: PMI02_04651
symbol: EJL22420.1
gene_biotype: protein_coding
description:
  GTP-binding protein TypA/BipA; PFAM: Elongation factor Tu domain 2, Elongation factor G C-terminus, Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA, small GTP-binding protein domain.


ensembl_gene_id: PMI02_04655
symbol: EJL22424.1
gene_biotype: protein_coding
description:
  Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; PFAM: ABC transporter.


ensembl_gene_id: PMI02_04657
symbol: recF
gene_biotype: protein_coding
description:
  recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: PMI02_04658
symbol: EJL22427.1
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: PMI02_04661
symbol: EJL22429.1
gene_biotype: protein_coding
description:
  DNA-methyltransferase Dcm; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: PMI02_04667
symbol: EJL22435.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, DNA invertase Pin; PFAM: Resolvase, N terminal domain, Helix-turn-helix domain of resolvase.


ensembl_gene_id: PMI02_04678
symbol: EJL22446.1
gene_biotype: protein_coding
description:
  Periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like Beta Propeller Repeat, Amidohydrolase family.


ensembl_gene_id: PMI02_04691
symbol: EJL22459.1
gene_biotype: protein_coding
description:
  PFAM: Glutaredoxin; TIGRFAM: monothiol glutaredoxin, Grx4 family; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: PMI02_04699
symbol: EJL22467.1
gene_biotype: protein_coding
description:
  Sterol desaturase; PFAM: Fatty acid hydroxylase superfamily; TIGRFAM: PEP-CTERM protein sorting domain.


ensembl_gene_id: PMI02_04704
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: PMI02_04742
symbol: EJL22192.1
gene_biotype: protein_coding
description:
  PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain), e3 binding domain, Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form.


ensembl_gene_id: PMI02_04746
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: PMI02_04749
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: PMI02_04758
symbol: EJL22208.1
gene_biotype: protein_coding
description:
  Type IV pili component; PFAM: Pilus biogenesis CpaD protein (pilus_cpaD); TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD.


ensembl_gene_id: PMI02_04759
symbol: EJL22209.1
gene_biotype: protein_coding
description:
  Flp pilus assembly protein, secretin CpaC; PFAM: Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.


ensembl_gene_id: PMI02_04766
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase, Neisseria type; PFAM: Phosphotransferase enzyme family; TIGRFAM: homoserine kinase, Neisseria type; Belongs to the pseudomonas-type ThrB family.


ensembl_gene_id: PMI02_04767
symbol: ispH
gene_biotype: protein_coding
description:
  (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: PMI02_04807
symbol: EJL22021.1
gene_biotype: protein_coding
description:
  Bacterial lipocalin; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.


ensembl_gene_id: PMI02_04814
symbol: EJL22028.1
gene_biotype: protein_coding
description:
  TPR repeat-containing protein; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives.


ensembl_gene_id: PMI02_04815
symbol: EJL22029.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives.


ensembl_gene_id: PMI02_04828
symbol: EJL22042.1
gene_biotype: protein_coding
description:
  Outer membrane cobalamin receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor.


ensembl_gene_id: PMI02_04831
symbol: EJL22045.1
gene_biotype: protein_coding
description:
  Dihydroxyacid dehydratase/phosphogluconate dehydratase; PFAM: Dehydratase family; Belongs to the IlvD/Edd family.


ensembl_gene_id: PMI02_04840
symbol: EJL22053.1
gene_biotype: protein_coding
description:
  Retron-type reverse transcriptase; PFAM: Group II intron, maturase-specific domain, Reverse transcriptase (RNA-dependent DNA polymerase).


ensembl_gene_id: PMI02_04849
symbol: EJL22062.1
gene_biotype: protein_coding
description:
  Glycosyltransferase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold, Oxidoreductase family, C-terminal alpha/beta domain, Glycosyl transferases group 1.


ensembl_gene_id: PMI02_04850
symbol: EJL22063.1
gene_biotype: protein_coding
description:
  UDP-galactopyranose mutase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase.


ensembl_gene_id: PMI02_04858
symbol: EJL21874.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain, 7TM diverse intracellular signalling, GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI02_04917
symbol: EJL21932.1
gene_biotype: protein_coding
description:
  PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: PMI02_04930
symbol: EJL21944.1
gene_biotype: protein_coding
description:
  PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: PMI02_04931
symbol: EJL21945.1
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain, UDP-glucose/GDP-mannose dehydrogenase family, central domain, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: PMI02_04934
symbol: EJL21948.1
gene_biotype: protein_coding
description:
  Sn-1,2-diacylglycerol ethanolamine/choline phosphotransferase; PFAM: CDP-alcohol phosphatidyltransferase.


ensembl_gene_id: PMI02_04936
symbol: EJL21950.1
gene_biotype: protein_coding
description:
  Thiosulfate reductase cytochrome B subunit (membrane anchoring protein); PFAM: Prokaryotic cytochrome b561.


ensembl_gene_id: PMI02_04938
symbol: EJL21952.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme.


ensembl_gene_id: PMI02_04949
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: PMI02_04953
symbol: EJL21966.1
gene_biotype: protein_coding
description:
  Phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III, Phosphoglucomutase/phosphomannomutase, C-terminal domain, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.


ensembl_gene_id: PMI02_04954
symbol: EJL21967.1
gene_biotype: protein_coding
description:
  DEXH box helicase, DNA ligase-associated; PFAM: Helicase conserved C-terminal domain, DEAD/H associated, DEAD/DEAH box helicase; TIGRFAM: DEXH box helicase, DNA ligase-associated.


ensembl_gene_id: PMI02_04956
symbol: queC
gene_biotype: protein_coding
description:
  Queuosine biosynthesis protein QueC; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: PMI02_04958
symbol: EJL21777.1
gene_biotype: protein_coding
description:
  Disulfide bond chaperone; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.


ensembl_gene_id: PMI02_04959
symbol: EJL21778.1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: PMI02_04960
symbol: argD
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine transaminases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: PMI02_04967
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: PMI02_04970
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain, Ferredoxin-fold anticodon binding domain, B3/4 domain, Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: PMI02_04971
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F), Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: PMI02_04972
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: PMI02_04973
symbol: rpmI
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: PMI02_04976
symbol: EJL21795.1
gene_biotype: protein_coding
description:
  PFAM: Inositol monophosphatase family; TIGRFAM: histidinol-phosphate phosphatase HisN, inositol monophosphatase family.


ensembl_gene_id: PMI02_04978
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: PMI02_04979
symbol: EJL21798.1
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase, class II; PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II.


ensembl_gene_id: PMI02_04990
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PMI02_04991
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PMI02_04993
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: PMI02_05010
symbol: EJL21677.1
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; PFAM: Nodulation protein S (NodS).


ensembl_gene_id: PMI02_05024
symbol: EJL21505.1
gene_biotype: protein_coding
description:
  O-6-methylguanine DNA methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: PMI02_05025
symbol: EJL21506.1
gene_biotype: protein_coding
description:
  Mannosyltransferase OCH1-like enzyme; PFAM: Glycosyltransferase sugar-binding region containing DXD motif.


ensembl_gene_id: PMI02_05027
symbol: EJL21508.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: PMI02_05035
symbol: EJL21515.1
gene_biotype: protein_coding
description:
  Ribonucleotide reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: PMI02_05048
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: PMI02_05050
symbol: rpoH
gene_biotype: protein_coding
description:
  Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: PMI02_05051
symbol: EJL21351.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: PMI02_05056
symbol: EJL21328.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI02_05057
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: PMI02_05058
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: PMI02_05059
symbol: ureE
gene_biotype: protein_coding
description:
  Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.


ensembl_gene_id: PMI02_05060
symbol: ureC
gene_biotype: protein_coding
description:
  Urease, alpha subunit; PFAM: Amidohydrolase family, Urease alpha-subunit, N-terminal domain; TIGRFAM: urease, alpha subunit.


ensembl_gene_id: PMI02_05061
symbol: ureB
gene_biotype: protein_coding
description:
  PFAM: Urease beta subunit; TIGRFAM: urease, beta subunit; Belongs to the urease beta subunit family.


ensembl_gene_id: PMI02_05062
symbol: ureA
gene_biotype: protein_coding
description:
  PFAM: Urease, gamma subunit; TIGRFAM: urease, gamma subunit; Belongs to the urease gamma subunit family.


ensembl_gene_id: PMI02_05063
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreH; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: PMI02_05179
symbol: dksA
gene_biotype: protein_coding
description:
  RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: PMI02_05181
symbol: EJL21111.1
gene_biotype: protein_coding
description:
  ABC-type oligopeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.


ensembl_gene_id: PMI02_05184
symbol: EJL21114.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecQ; PFAM: Helicase conserved C-terminal domain, RQC domain, HRDC domain, DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ, ATP-dependent DNA helicase, RecQ family.


ensembl_gene_id: PMI02_05187
symbol: EJL21117.1
gene_biotype: protein_coding
description:
  5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: PMI02_05190
symbol: EJL21120.1
gene_biotype: protein_coding
description:
  PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: PMI02_05191
symbol: EJL21121.1
gene_biotype: protein_coding
description:
  Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Bacterial regulatory protein, arsR family, Methyltransferase domain.


ensembl_gene_id: PMI02_05196
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation ATPase; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: PMI02_05202
symbol: EJL21132.1
gene_biotype: protein_coding
description:
  Zn-finger containing NTP pyrophosphohydrolase; PFAM: NADH pyrophosphatase zinc ribbon domain, NUDIX domain, NADH pyrophosphatase-like rudimentary NUDIX domain.


ensembl_gene_id: PMI02_05206
symbol: ybeY
gene_biotype: protein_coding
description:
  Metalloprotein, YbeY/UPF0054 family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: PMI02_05213
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: PMI02_05216
symbol: argS
gene_biotype: protein_coding
description:
  arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain, Arginyl tRNA synthetase N terminal domain, tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.


ensembl_gene_id: PMI02_05218
symbol: EJL21148.1
gene_biotype: protein_coding
description:
  PLP-dependent enzyme, histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase; PFAM: Aminotransferase class I and II.


ensembl_gene_id: PMI02_05220
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: PMI02_05230
symbol: azoR
gene_biotype: protein_coding
description:
  Acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: PMI02_05244
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: PMI02_05247
symbol: trmL
gene_biotype: protein_coding
description:
  Putative rRNA methylase SpoU family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: PMI02_05249
symbol: EJL21178.1
gene_biotype: protein_coding
description:
  PFAM: Na+ dependent nucleoside transporter C-terminus, Na+ dependent nucleoside transporter N-terminus, Nucleoside recognition; TIGRFAM: nucleoside transporter.


ensembl_gene_id: PMI02_05257
symbol: EJL21186.1
gene_biotype: protein_coding
description:
  Ribonucleotide reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: PMI02_05263
symbol: EJL20939.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in Fe-S cluster assembly, permease component; PFAM: Uncharacterized protein family (UPF0051).


ensembl_gene_id: PMI02_05266
symbol: EJL20942.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.


ensembl_gene_id: PMI02_05267
symbol: EJL20943.1
gene_biotype: protein_coding
description:
  PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein, FeS assembly SUF system regulator, gammaproteobacterial.


ensembl_gene_id: PMI02_05268
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase, subfamily 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: PMI02_05271
symbol: EJL20947.1
gene_biotype: protein_coding
description:
  Ca2+/H+ antiporter; PFAM: Sodium/calcium exchanger protein; TIGRFAM: calcium/proton exchanger, calcium/proton exchanger (cax).


ensembl_gene_id: PMI02_05274
symbol: thiG
gene_biotype: protein_coding
description:
  Putative enzyme of thiazole biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: PMI02_05277
symbol: ctaA
gene_biotype: protein_coding
description:
  Hypothetical protein required for cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.


ensembl_gene_id: PMI02_05278
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: PMI02_05285
symbol: leuS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (I, L, M and V), Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI02_05292
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: PMI02_05294
symbol: EJL20970.1
gene_biotype: protein_coding
description:
  PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.


ensembl_gene_id: PMI02_05295
symbol: EJL20971.1
gene_biotype: protein_coding
description:
  PFAM: Conserved region in glutamate synthase, GXGXG motif, Glutamate synthase central domain, Glutamine amidotransferases class-II.


ensembl_gene_id: PMI02_05297
symbol: EJL20973.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferases group 1; TIGRFAM: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family.


ensembl_gene_id: PMI02_05303
symbol: trmB
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: PMI02_05307
symbol: EJL20983.1
gene_biotype: protein_coding
description:
  Putative enzyme of heme biosynthesis; PFAM: Cellulose synthase operon protein C C-terminus (BCSC_C).


ensembl_gene_id: PMI02_05308
symbol: EJL20984.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial cellulose synthase subunit, Glycosyl transferase family 2, PilZ domain, Cellulose synthase; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming).


ensembl_gene_id: PMI02_05313
symbol: EJL20989.1
gene_biotype: protein_coding
description:
  Putative Rossmann fold nucleotide-binding protein; PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00730 family protein.


ensembl_gene_id: PMI02_05318
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: PMI02_05322
symbol: EJL20998.1
gene_biotype: protein_coding
description:
  Glutamyl- or glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI02_05324
symbol: EJL21000.1
gene_biotype: protein_coding
description:
  PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: PMI02_05325
symbol: EJL21001.1
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.


ensembl_gene_id: PMI02_05327
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: PMI02_05328
symbol: EJL21004.1
gene_biotype: protein_coding
description:
  Malic enzyme; PFAM: Phosphate acetyl/butaryl transferase, Malic enzyme, NAD binding domain, Malic enzyme, N-terminal domain.


ensembl_gene_id: PMI02_05332
symbol: EJL21008.1
gene_biotype: protein_coding
description:
  Homocysteine/selenocysteine methylase (S-methylmethionine-dependent); PFAM: Homocysteine S-methyltransferase.


ensembl_gene_id: PMI02_05334
symbol: rlmE
gene_biotype: protein_coding
description:
  23S rRNA methylase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: PMI02_05336
symbol: EJL20798.1
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: PMI02_05341
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: PMI02_05344
symbol: EJL20806.1
gene_biotype: protein_coding
description:
  PFAM: Demethylmenaquinone methyltransferase; TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase.


ensembl_gene_id: PMI02_05346
symbol: EJL20808.1
gene_biotype: protein_coding
description:
  Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; PFAM: Domain of unknown function (DUF1932), NAD binding domain of 6-phosphogluconate dehydrogenase.


ensembl_gene_id: PMI02_05348
symbol: EJL20810.1
gene_biotype: protein_coding
description:
  PFAM: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit.


ensembl_gene_id: PMI02_05355
symbol: EJL20817.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain, TAT (twin-arginine translocation) pathway signal sequence, [2Fe-2S] binding domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.


ensembl_gene_id: PMI02_05356
symbol: EJL20818.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Sugar (and other) transporter; TIGRFAM: metabolite-proton symporter.


ensembl_gene_id: PMI02_05357
symbol: EJL20819.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase N terminal, Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain.


ensembl_gene_id: PMI02_05358
symbol: EJL20820.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase family, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.


ensembl_gene_id: PMI02_05361
symbol: EJL20823.1
gene_biotype: protein_coding
description:
  Long-chain fatty acid transport protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).


ensembl_gene_id: PMI02_05366
symbol: EJL20828.1
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PMI02_05367
symbol: EJL20829.1
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysW; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein CysW, sulfate ABC transporter, permease protein.


ensembl_gene_id: PMI02_05368
symbol: cysA
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI02_05375
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PMI02_05379
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: PMI02_05380
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: PMI02_05381
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: PMI02_05384
symbol: rpsU
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: PMI02_05385
symbol: crcB
gene_biotype: protein_coding
description:
  Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: PMI02_05386
symbol: EJL20848.1
gene_biotype: protein_coding
description:
  PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: PMI02_05387
symbol: EJL20849.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.


ensembl_gene_id: PMI02_05391
symbol: EJL20853.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, auxiliary component; PFAM: Protein of unknown function (DUF330).


ensembl_gene_id: PMI02_05392
symbol: EJL20854.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in resistance to organic solvents, periplasmic component; PFAM: mce related protein.


ensembl_gene_id: PMI02_05393
symbol: EJL20855.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in resistance to organic solvents, ATPase component; PFAM: ABC transporter.


ensembl_gene_id: PMI02_05394
symbol: EJL20856.1
gene_biotype: protein_coding
description:
  Putative integral membrane protein; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.


ensembl_gene_id: PMI02_05395
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: PMI02_05396
symbol: queE
gene_biotype: protein_coding
description:
  Organic radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: PMI02_05413
symbol: EJL20757.1
gene_biotype: protein_coding
description:
  PFAM: CagE, TrbE, VirB family, component of type IV transporter system; TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family.


ensembl_gene_id: PMI02_05417
symbol: EJL20761.1
gene_biotype: protein_coding
description:
  P-type DNA transfer ATPase VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.


ensembl_gene_id: PMI02_05419
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase 1; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: PMI02_05420
symbol: EJL20764.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Transglutaminase-like superfamily, Bacterial transglutaminase-like N-terminal region, Putative amidoligase enzyme (DUF2126).


ensembl_gene_id: PMI02_05421
symbol: EJL20765.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Bacterial domain of unknown function (DUF403), Domain of unknown function (DUF407), Domain of unknown function (DUF404).


ensembl_gene_id: PMI02_05443
symbol: EJL20706.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region, ABC transporter; TIGRFAM: ABC transporter, permease/ATP-binding protein.


ensembl_gene_id: PMI02_05445
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: PMI02_05447
symbol: rpmG
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: PMI02_05448
symbol: EJL20711.1
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: PMI02_05450
symbol: ribA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: PMI02_05460
symbol: EJL20723.1
gene_biotype: protein_coding
description:
  PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: PMI02_05462
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: PMI02_05468
symbol: EJL20731.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; PFAM: GAF domain, PEP-utilising enzyme, mobile domain, PEP-utilising enzyme, TIM barrel domain, PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PMI02_05471
symbol: tilS
gene_biotype: protein_coding
description:
  Putative ATPase of the PP-loop superfamily implicated in cell cycle control; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: PMI02_05505
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: PMI02_05517
symbol: EJL20398.1
gene_biotype: protein_coding
description:
  Heme/copper-type cytochrome/quinol oxidase, subunit 1; PFAM: Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: PMI02_05518
symbol: EJL20399.1
gene_biotype: protein_coding
description:
  Heme/copper-type cytochrome/quinol oxidase, subunit 3; PFAM: Cytochrome c oxidase subunit III; TIGRFAM: cytochrome o ubiquinol oxidase, subunit III.


ensembl_gene_id: PMI02_05520
symbol: EJL20401.1
gene_biotype: protein_coding
description:
  Putative Co/Zn/Cd cation transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter.


ensembl_gene_id: PMI02_05556
symbol: EJL20271.1
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl pentapeptide synthase; PFAM: Mur ligase family, glutamate ligase domain, Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase.


ensembl_gene_id: PMI02_05557
symbol: EJL20272.1
gene_biotype: protein_coding
description:
  Multidrug resistance efflux pump; PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.


ensembl_gene_id: PMI02_05558
symbol: EJL20273.1
gene_biotype: protein_coding
description:
  Type I secretion system ATPase, LssB family; PFAM: ABC transporter transmembrane region, ABC transporter; TIGRFAM: type I secretion system ATPase, LssB family.


ensembl_gene_id: PMI02_05564
symbol: lysS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (K); TIGRFAM: lysyl-tRNA synthetase, archaeal and spirochete; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI02_05579
symbol: EJL20255.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein.


