# geneInfo

ensembl_gene_id: PMI04_00024
symbol: EJK86990.1
gene_biotype: protein_coding
description:
  Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.


ensembl_gene_id: PMI04_00025
symbol: EJK86991.1
gene_biotype: protein_coding
description:
  Putative signal-transduction protein containing cAMP-binding and CBS domain-containing protein; PFAM: CBS domain.


ensembl_gene_id: PMI04_00031
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: PMI04_00032
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: PMI04_00033
symbol: hisS
gene_biotype: protein_coding
description:
  PFAM: Anticodon binding domain, tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase.


ensembl_gene_id: PMI04_00034
symbol: EJK87000.1
gene_biotype: protein_coding
description:
  Putative protease with the C-terminal PDZ domain-containing protein; PFAM: M61 glycyl aminopeptidase.


ensembl_gene_id: PMI04_00035
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: PMI04_00036
symbol: EJK87002.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with HTH domain and aminotransferase domain-containing protein; PFAM: Bacterial regulatory proteins, gntR family, Aminotransferase class I and II.


ensembl_gene_id: PMI04_00041
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: PMI04_00044
symbol: EJK87010.1
gene_biotype: protein_coding
description:
  Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family.


ensembl_gene_id: PMI04_00045
symbol: EJK87011.1
gene_biotype: protein_coding
description:
  DEXH box helicase, DNA ligase-associated; PFAM: Helicase conserved C-terminal domain, DEAD/H associated, DEAD/DEAH box helicase; TIGRFAM: DEXH box helicase, DNA ligase-associated.


ensembl_gene_id: PMI04_00047
symbol: EJK87013.1
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme.


ensembl_gene_id: PMI04_00048
symbol: EJK87014.1
gene_biotype: protein_coding
description:
  Lactate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: PMI04_00050
symbol: EJK87016.1
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490, Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like.


ensembl_gene_id: PMI04_00051
symbol: EJK87017.1
gene_biotype: protein_coding
description:
  Hypothetical integral membrane protein; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.


ensembl_gene_id: PMI04_00052
symbol: EJK87018.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in resistance to organic solvent, ATPase component; PFAM: ABC transporter.


ensembl_gene_id: PMI04_00053
symbol: EJK87019.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in resistance to organic solvent, periplasmic component; PFAM: mce related protein.


ensembl_gene_id: PMI04_00054
symbol: EJK87020.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, auxiliary component; PFAM: Protein of unknown function (DUF330).


ensembl_gene_id: PMI04_00055
symbol: EJK87021.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF3458), Peptidase family M1; TIGRFAM: aminopeptidase N, Escherichia coli type.


ensembl_gene_id: PMI04_00056
symbol: EJK87022.1
gene_biotype: protein_coding
description:
  ParB-like partition protein; PFAM: ParB-like nuclease domain, KorB domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family.


ensembl_gene_id: PMI04_00058
symbol: rsmG
gene_biotype: protein_coding
description:
  16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: PMI04_00059
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: PMI04_00060
symbol: mnmE
gene_biotype: protein_coding
description:
  Small GTP-binding protein domain-containing protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: PMI04_00063
symbol: EJK87029.1
gene_biotype: protein_coding
description:
  Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase.


ensembl_gene_id: PMI04_00064
symbol: EJK87030.1
gene_biotype: protein_coding
description:
  Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; PFAM: Phytanoyl-CoA dioxygenase (PhyH).


ensembl_gene_id: PMI04_00066
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: PMI04_00068
symbol: EJK87034.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain, Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family.


ensembl_gene_id: PMI04_00069
symbol: msrB
gene_biotype: protein_coding
description:
  PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: PMI04_00072
symbol: leuS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (I, L, M and V), Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI04_00076
symbol: EJK87042.1
gene_biotype: protein_coding
description:
  Putative gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.


ensembl_gene_id: PMI04_00078
symbol: EJK87044.1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: PMI04_00079
symbol: EJK87045.1
gene_biotype: protein_coding
description:
  Outer membrane receptor protein; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI04_00085
symbol: EJK87051.1
gene_biotype: protein_coding
description:
  Putative protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic system; PFAM: SCO1/SenC.


ensembl_gene_id: PMI04_00091
symbol: EJK87057.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN.


ensembl_gene_id: PMI04_00092
symbol: hpf
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: PMI04_00093
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: PMI04_00094
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: PMI04_00095
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: PMI04_00096
symbol: EJK87062.1
gene_biotype: protein_coding
description:
  Nucleotide-binding protein implicated in inhibition of septum formation; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: PMI04_00097
symbol: EJK87063.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: PMI04_00098
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: PMI04_00099
symbol: EJK87065.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Uncharacterized protein family (UPF0093); TIGRFAM: TIGR00701 family protein.


ensembl_gene_id: PMI04_00102
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: PMI04_00104
symbol: EJK87070.1
gene_biotype: protein_coding
description:
  DnaJ-class molecular chaperone with C-terminal Zn finger domain-containing protein; PFAM: DnaJ domain.


ensembl_gene_id: PMI04_00105
symbol: EJK87071.1
gene_biotype: protein_coding
description:
  Phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II, Phosphoglucomutase/phosphomannomutase, C-terminal domain, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.


ensembl_gene_id: PMI04_00107
symbol: EJK87072.1
gene_biotype: protein_coding
description:
  Long-chain fatty acid transport protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).


ensembl_gene_id: PMI04_00108
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: PMI04_00114
symbol: EJK87078.1
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: PMI04_00115
symbol: EJK87079.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III, exodeoxyribonuclease III (xth).


ensembl_gene_id: PMI04_00116
symbol: ribA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: PMI04_00118
symbol: glnD
gene_biotype: protein_coding
description:
  (protein-PII) uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.


ensembl_gene_id: PMI04_00119
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: PMI04_00120
symbol: EJK87084.1
gene_biotype: protein_coding
description:
  Malic enzyme; PFAM: Phosphate acetyl/butaryl transferase, Malic enzyme, NAD binding domain, Malic enzyme, N-terminal domain.


ensembl_gene_id: PMI04_00121
symbol: EJK87085.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Guanylyl transferase CofC like; TIGRFAM: 2-phospho-L-lactate guanylyltransferase.


ensembl_gene_id: PMI04_00122
symbol: EJK87086.1
gene_biotype: protein_coding
description:
  LPPG:FO 2-phospho-L-lactate transferase; PFAM: Uncharacterized protein family UPF0052; TIGRFAM: LPPG:FO 2-phospho-L-lactate transferase.


ensembl_gene_id: PMI04_00124
symbol: EJK87088.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain.


ensembl_gene_id: PMI04_00132
symbol: EJK87096.1
gene_biotype: protein_coding
description:
  DNA-binding protein, excisionase family; PFAM: Protein of unknown function (DUF1580); TIGRFAM: DNA binding domain, excisionase family.


ensembl_gene_id: PMI04_00147
symbol: dinB
gene_biotype: protein_coding
description:
  nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: PMI04_00156
symbol: EJK86820.1
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; TIGRFAM: probable F420-dependent oxidoreductase, Rv2161c family.


ensembl_gene_id: PMI04_00159
symbol: EJK86823.1
gene_biotype: protein_coding
description:
  Putative acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: PMI04_00171
symbol: EJK86835.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.


ensembl_gene_id: PMI04_00174
symbol: EJK86838.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain, Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PMI04_00176
symbol: EJK86840.1
gene_biotype: protein_coding
description:
  Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor.


ensembl_gene_id: PMI04_00187
symbol: EJK86851.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: Biotin-requiring enzyme.


ensembl_gene_id: PMI04_00190
symbol: EJK86854.1
gene_biotype: protein_coding
description:
  Bacteriophytochrome (light-regulated signal transduction histidine kinase); PFAM: Response regulator receiver domain, GAF domain, Phytochrome region, HWE histidine kinase, PAS fold.


ensembl_gene_id: PMI04_00195
symbol: EJK86859.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit; PFAM: Dehydrogenase E1 component.


ensembl_gene_id: PMI04_00196
symbol: EJK86860.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; PFAM: Transketolase, C-terminal domain, Transketolase, pyrimidine binding domain.


ensembl_gene_id: PMI04_00197
symbol: EJK86861.1
gene_biotype: protein_coding
description:
  Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; PFAM: Luciferase-like monooxygenase.


ensembl_gene_id: PMI04_00206
symbol: groS
gene_biotype: protein_coding
description:
  Co-chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: PMI04_00207
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: PMI04_00209
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: PMI04_00214
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase, queuosine-34-forming; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of  [...]


ensembl_gene_id: PMI04_00219
symbol: EJK86786.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4, Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PMI04_00221
symbol: EJK86788.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.


ensembl_gene_id: PMI04_00222
symbol: EJK86789.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: putative PEP-CTERM system histidine kinase.


ensembl_gene_id: PMI04_00223
symbol: EJK86790.1
gene_biotype: protein_coding
description:
  PEP-CTERM-box response regulator transcription factor; PFAM: Response regulator receiver domain, Bacterial regulatory protein, Fis family, Sigma-54 interaction domain; TIGRFAM: PEP-CTERM-box response regulator transcription factor.


ensembl_gene_id: PMI04_00230
symbol: EJK86797.1
gene_biotype: protein_coding
description:
  Amidohydrolase, imidazolonepropionase; PFAM: Amidohydrolase family; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_00232
symbol: EJK86799.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor.


ensembl_gene_id: PMI04_00234
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: PMI04_00235
symbol: EJK86725.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain, Penicillin-binding Protein dimerization domain; TIGRFAM: penicillin-binding protein 2.


ensembl_gene_id: PMI04_00239
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: PMI04_00245
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: PMI04_00247
symbol: EJK86737.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI04_00250
symbol: EJK86740.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); PFAM: Carboxyl transferase domain.


ensembl_gene_id: PMI04_00252
symbol: EJK86742.1
gene_biotype: protein_coding
description:
  acetyl/propionyl-CoA carboxylase, alpha subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain, Biotin-requiring enzyme.


ensembl_gene_id: PMI04_00259
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: PMI04_00261
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: PMI04_00262
symbol: EJK86751.1
gene_biotype: protein_coding
description:
  Protein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: PMI04_00263
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: PMI04_00265
symbol: EJK86754.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor; TIGRFAM: TonB-dependent receptor.


ensembl_gene_id: PMI04_00269
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: PMI04_00271
symbol: ybeY
gene_biotype: protein_coding
description:
  Metalloprotein, YbeY/UPF0054 family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: PMI04_00276
symbol: EJK86544.1
gene_biotype: protein_coding
description:
  Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; TIGRFAM: dihydrolipoamide dehydrogenase.


ensembl_gene_id: PMI04_00278
symbol: EJK86546.1
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: PMI04_00289
symbol: EJK86556.1
gene_biotype: protein_coding
description:
  Protease II; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain, Prolyl oligopeptidase family.


ensembl_gene_id: PMI04_00294
symbol: EJK86561.1
gene_biotype: protein_coding
description:
  Dioxygenase, isopenicillin N synthase; PFAM: 2OG-Fe(II) oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family.


ensembl_gene_id: PMI04_00295
symbol: EJK86562.1
gene_biotype: protein_coding
description:
  FolB domain protein; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase, FolB domain.


ensembl_gene_id: PMI04_00299
symbol: EJK86566.1
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase/poly(A) polymerase; PFAM: Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: PMI04_00301
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit, proteobacterial; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: PMI04_00302
symbol: EJK86569.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI04_00305
symbol: EJK86572.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase, glucoamylase; PFAM: Glycosyl hydrolases family 15; TIGRFAM: pentatricopeptide repeat domain (PPR motif).


ensembl_gene_id: PMI04_00306
symbol: EJK86573.1
gene_biotype: protein_coding
description:
  UDP-forming alpha,alpha-trehalose-phosphate synthase; Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.


ensembl_gene_id: PMI04_00312
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS protein; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought [...]


ensembl_gene_id: PMI04_00313
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: PMI04_00314
symbol: EJK86581.1
gene_biotype: protein_coding
description:
  Capsular exopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein, CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family.


ensembl_gene_id: PMI04_00316
symbol: EJK86583.1
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain, UDP-glucose/GDP-mannose dehydrogenase family, central domain, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: PMI04_00318
symbol: EJK86585.1
gene_biotype: protein_coding
description:
  PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: PMI04_00319
symbol: EJK86586.1
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain, UDP-glucose/GDP-mannose dehydrogenase family, central domain, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase.


ensembl_gene_id: PMI04_00327
symbol: EJK86594.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized ACR, COG2135; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: PMI04_00331
symbol: fbp
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase; PFAM: Fructose-1-6-bisphosphatase; Belongs to the FBPase class 1 family.


ensembl_gene_id: PMI04_00333
symbol: EJK86600.1
gene_biotype: protein_coding
description:
  Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_00345
symbol: EJK86612.1
gene_biotype: protein_coding
description:
  Putative nuleotide-utilizing enzyme, moeA; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain.


ensembl_gene_id: PMI04_00349
symbol: EJK86616.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine synthetase, catalytic domain, Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.


ensembl_gene_id: PMI04_00355
symbol: EJK86622.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: PMI04_00356
symbol: rpoH
gene_biotype: protein_coding
description:
  Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: PMI04_00360
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: PMI04_00362
symbol: clpX
gene_biotype: protein_coding
description:
  Endopeptidase Clp ATP-binding regulatory subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: PMI04_00363
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: PMI04_00366
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: PMI04_00371
symbol: cobB
gene_biotype: protein_coding
description:
  NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family; Belongs to the sirtuin family. Class III subfamily.


ensembl_gene_id: PMI04_00373
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: PMI04_00374
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: PMI04_00378
symbol: EJK86643.1
gene_biotype: protein_coding
description:
  O-6-methylguanine DNA methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: PMI04_00379
symbol: EJK86644.1
gene_biotype: protein_coding
description:
  PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.


ensembl_gene_id: PMI04_00380
symbol: EJK86645.1
gene_biotype: protein_coding
description:
  PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.


ensembl_gene_id: PMI04_00381
symbol: EJK86646.1
gene_biotype: protein_coding
description:
  PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PMI04_00386
symbol: EJK86651.1
gene_biotype: protein_coding
description:
  Putative Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain, Insulinase (Peptidase family M16); Belongs to the peptidase M16 family.


ensembl_gene_id: PMI04_00387
symbol: EJK86652.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, DEAD/DEAH box helicase.


ensembl_gene_id: PMI04_00394
symbol: fur
gene_biotype: protein_coding
description:
  Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family; Belongs to the Fur family.


ensembl_gene_id: PMI04_00399
symbol: EJK86366.1
gene_biotype: protein_coding
description:
  PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase, Glu/Leu/Phe/Val dehydrogenase, dimerization domain; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: PMI04_00402
symbol: EJK86369.1
gene_biotype: protein_coding
description:
  Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation); PFAM: Bacterial capsule synthesis protein PGA_cap.


ensembl_gene_id: PMI04_00403
symbol: EJK86370.1
gene_biotype: protein_coding
description:
  PFAM: HAMP domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, Two-component sensor kinase N-terminal.


ensembl_gene_id: PMI04_00406
symbol: EJK86373.1
gene_biotype: protein_coding
description:
  Outer membrane cobalamin receptor protein; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor.


ensembl_gene_id: PMI04_00416
symbol: EJK86383.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: PMI04_00418
symbol: EJK86385.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, Two-component sensor kinase N-terminal.


ensembl_gene_id: PMI04_00419
symbol: EJK86386.1
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily, HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: PMI04_00423
symbol: EJK86390.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI04_00426
symbol: EJK86393.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with HTH domain and aminotransferase domain-containing protein; PFAM: Aminotransferase class I and II, Bacterial regulatory proteins, gntR family.


ensembl_gene_id: PMI04_00430
symbol: EJK86397.1
gene_biotype: protein_coding
description:
  Periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like Beta Propeller Repeat.


ensembl_gene_id: PMI04_00444
symbol: EJK86302.1
gene_biotype: protein_coding
description:
  PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.


ensembl_gene_id: PMI04_00453
symbol: EJK86256.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmD family; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family.


ensembl_gene_id: PMI04_00454
symbol: EJK86257.1
gene_biotype: protein_coding
description:
  PFAM: RNA pseudouridylate synthase, S4 domain; TIGRFAM: pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: PMI04_00455
symbol: EJK86258.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain.


ensembl_gene_id: PMI04_00458
symbol: EJK86261.1
gene_biotype: protein_coding
description:
  PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: PMI04_00459
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: PMI04_00460
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: PMI04_00461
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: PMI04_00466
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: PMI04_00477
symbol: EJK86279.1
gene_biotype: protein_coding
description:
  Beta-galactosidase/beta-glucuronidase; PFAM: domain, Glycosyl hydrolases family 2, TIM barrel domain, Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: PMI04_00487
symbol: EJK86072.1
gene_biotype: protein_coding
description:
  Putative C-terminal domain of topoisomerase IA; PFAM: Topoisomerase DNA binding C4 zinc finger, DNA topoisomerase.


ensembl_gene_id: PMI04_00489
symbol: EJK86074.1
gene_biotype: protein_coding
description:
  DNA-binding domain-containing protein, AraC-type; PFAM: AraC-type transcriptional regulator N-terminus.


ensembl_gene_id: PMI04_00491
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: PMI04_00492
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: PMI04_00493
symbol: EJK86078.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.


ensembl_gene_id: PMI04_00500
symbol: EJK86085.1
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix, Predicted transcriptional regulator (DUF2083), Domain of unknown function (DUF955).


ensembl_gene_id: PMI04_00504
symbol: EJK86089.1
gene_biotype: protein_coding
description:
  PFAM: Methylmalonyl-CoA mutase, B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain, methylmalonyl-CoA mutase C-terminal domain.


ensembl_gene_id: PMI04_00505
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: PMI04_00506
symbol: EJK86091.1
gene_biotype: protein_coding
description:
  acetyl/propionyl-CoA carboxylase, alpha subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain, Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit.


ensembl_gene_id: PMI04_00507
symbol: EJK86092.1
gene_biotype: protein_coding
description:
  Export-related chaperone CsaA; PFAM: Putative tRNA binding domain; TIGRFAM: export-related chaperone CsaA.


ensembl_gene_id: PMI04_00510
symbol: EJK86095.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: PMI04_00513
symbol: EJK86098.1
gene_biotype: protein_coding
description:
  Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain, PHB/PHA accumulation regulator DNA-binding domain; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR.


ensembl_gene_id: PMI04_00514
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase, family I; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).


ensembl_gene_id: PMI04_00516
symbol: EJK86101.1
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.


ensembl_gene_id: PMI04_00517
symbol: hslV
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: PMI04_00522
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: PMI04_00527
symbol: amn
gene_biotype: protein_coding
description:
  AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.


ensembl_gene_id: PMI04_00528
symbol: EJK86112.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.


ensembl_gene_id: PMI04_00529
symbol: EJK86113.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: Uncharacterized ACR, COG1678; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: PMI04_00531
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: PMI04_00532
symbol: EJK86116.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI04_00537
symbol: EJK86121.1
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; TIGRFAM: double-strand break repair helicase AddA, alphaproteobacterial type; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: PMI04_00541
symbol: argJ
gene_biotype: protein_coding
description:
  Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: PMI04_00543
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: PMI04_00547
symbol: rlpA
gene_biotype: protein_coding
description:
  Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: PMI04_00548
symbol: EJK86131.1
gene_biotype: protein_coding
description:
  PFAM: D-alanyl-D-alanine carboxypeptidase, Penicillin-binding protein 5, C-terminal domain; Belongs to the peptidase S11 family.


ensembl_gene_id: PMI04_00549
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: PMI04_00550
symbol: EJK86133.1
gene_biotype: protein_coding
description:
  DNA polymerase III, gamma/tau subunit; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, delta' subunit.


ensembl_gene_id: PMI04_00551
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.


ensembl_gene_id: PMI04_00555
symbol: EJK86138.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Sugar (and other) transporter; TIGRFAM: metabolite-proton symporter.


ensembl_gene_id: PMI04_00563
symbol: EJK86146.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: PMI04_00570
symbol: EJK86153.1
gene_biotype: protein_coding
description:
  MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein.


ensembl_gene_id: PMI04_00573
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: PMI04_00574
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: PMI04_00575
symbol: EJK86158.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain, Bacterial regulatory protein, Fis family, Sigma-54 interaction domain.


ensembl_gene_id: PMI04_00576
symbol: EJK86159.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; PFAM: HAMP domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI04_00577
symbol: ntrC
gene_biotype: protein_coding
description:
  Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: PMI04_00578
symbol: EJK86161.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI04_00579
symbol: EJK86162.1
gene_biotype: protein_coding
description:
  Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: PMI04_00580
symbol: ispDF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).


ensembl_gene_id: PMI04_00581
symbol: EJK86164.1
gene_biotype: protein_coding
description:
  PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain; Belongs to the CinA family.


ensembl_gene_id: PMI04_00582
symbol: EJK86165.1
gene_biotype: protein_coding
description:
  Oligoketide cyclase/lipid transport protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.


ensembl_gene_id: PMI04_00583
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoate synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: PMI04_00584
symbol: EJK86167.1
gene_biotype: protein_coding
description:
  Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: PMI04_00594
symbol: EJK86175.1
gene_biotype: protein_coding
description:
  Sulfite reductase, beta subunit (hemoprotein); PFAM: Nitrite/Sulfite reductase ferredoxin-like half domain.


ensembl_gene_id: PMI04_00596
symbol: EJK86177.1
gene_biotype: protein_coding
description:
  Precorrin-2 C20-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: PMI04_00597
symbol: EJK86178.1
gene_biotype: protein_coding
description:
  precorrin-3B C17-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase.


ensembl_gene_id: PMI04_00599
symbol: EJK86180.1
gene_biotype: protein_coding
description:
  PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit, precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.


ensembl_gene_id: PMI04_00601
symbol: EJK86182.1
gene_biotype: protein_coding
description:
  Precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: PMI04_00602
symbol: cbiA
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: PMI04_00603
symbol: EJK86184.1
gene_biotype: protein_coding
description:
  precorrin-6A synthase, deacetylating; Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.


ensembl_gene_id: PMI04_00609
symbol: EJK86189.1
gene_biotype: protein_coding
description:
  Histidine utilization repressor; PFAM: Bacterial regulatory proteins, gntR family, UTRA domain; TIGRFAM: histidine utilization repressor, proteobacterial.


ensembl_gene_id: PMI04_00618
symbol: EJK86198.1
gene_biotype: protein_coding
description:
  Thioredoxin domain-containing protein; PFAM: Cellulose synthase operon protein C C-terminus (BCSC_C).


ensembl_gene_id: PMI04_00619
symbol: EJK86199.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial cellulose synthase subunit, Glycosyl transferase family 2, PilZ domain; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming).


ensembl_gene_id: PMI04_00627
symbol: EJK86207.1
gene_biotype: protein_coding
description:
  PTS system, N-acetylglucosamine-specific IIBC component; PFAM: Phosphotransferase system, EIIC, phosphotransferase system, EIIB; TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC component, PTS system, glucose-like IIB component.


ensembl_gene_id: PMI04_00628
symbol: EJK86208.1
gene_biotype: protein_coding
description:
  Phosphotransferase system HPr (HPr) family protein; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1, PEP-utilising enzyme, mobile domain, PEP-utilising enzyme, TIM barrel domain, PTS HPr component phosphorylation site, PEP-utilising enzyme, N-terminal; TIGRFAM: Phosphotransferase System HPr (HPr) Family, phosphoenolpyruvate-protein phosphotransferase, PTS system, glucose subfamily, IIA component.


ensembl_gene_id: PMI04_00635
symbol: EJK85926.1
gene_biotype: protein_coding
description:
  Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase.


ensembl_gene_id: PMI04_00643
symbol: EJK85934.1
gene_biotype: protein_coding
description:
  TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PMI04_00644
symbol: EJK85935.1
gene_biotype: protein_coding
description:
  PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PMI04_00648
symbol: EJK85783.1
gene_biotype: protein_coding
description:
  Putative Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain, Insulinase (Peptidase family M16).


ensembl_gene_id: PMI04_00650
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PMI04_00651
symbol: EJK85786.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI04_00653
symbol: EJK85788.1
gene_biotype: protein_coding
description:
  Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase; PFAM: Aspartyl/Asparaginyl beta-hydroxylase.


ensembl_gene_id: PMI04_00659
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: PMI04_00660
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain, Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; Belongs to the GARS family.


ensembl_gene_id: PMI04_00666
symbol: EJK85801.1
gene_biotype: protein_coding
description:
  Zn-finger containing NTP pyrophosphohydrolase; PFAM: NADH pyrophosphatase zinc ribbon domain, NUDIX domain, NADH pyrophosphatase-like rudimentary NUDIX domain; Belongs to the Nudix hydrolase family.


ensembl_gene_id: PMI04_00671
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: PMI04_00674
symbol: EJK85809.1
gene_biotype: protein_coding
description:
  Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; PFAM: Phospholipase D Active site motif.


ensembl_gene_id: PMI04_00675
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate polyprenyl transferase, proteobacterial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: PMI04_00676
symbol: EJK85811.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: PMI04_00677
symbol: EJK85812.1
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase, plant type; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.


ensembl_gene_id: PMI04_00678
symbol: EJK85813.1
gene_biotype: protein_coding
description:
  Putative protein-S-isoprenylcysteine methyltransferase; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family.


ensembl_gene_id: PMI04_00681
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction resolvasome, DNA-binding subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: PMI04_00682
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase, RuvB subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: PMI04_00685
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: PMI04_00686
symbol: EJK85821.1
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: lactoylglutathione lyase.


ensembl_gene_id: PMI04_00694
symbol: EJK85828.1
gene_biotype: protein_coding
description:
  Putative phage tail region protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.


ensembl_gene_id: PMI04_00698
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: PMI04_00701
symbol: rpmH
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: PMI04_00702
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: PMI04_00703
symbol: EJK85746.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: PMI04_00704
symbol: yidC
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family, N-terminal domain-containing protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: PMI04_00705
symbol: engB
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC/EngB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: PMI04_00706
symbol: EJK85749.1
gene_biotype: protein_coding
description:
  Putative Zn-ribbon-containing protein involved in phosphonate metabolism; PFAM: PhnA protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA.


ensembl_gene_id: PMI04_00718
symbol: EJK85761.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferases group 1; TIGRFAM: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family.


ensembl_gene_id: PMI04_00724
symbol: EJK85767.1
gene_biotype: protein_coding
description:
  Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.


ensembl_gene_id: PMI04_00725
symbol: EJK85768.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region, ABC transporter; TIGRFAM: ABC transporter, permease/ATP-binding protein.


ensembl_gene_id: PMI04_00730
symbol: EJK85773.1
gene_biotype: protein_coding
description:
  TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.


ensembl_gene_id: PMI04_00734
symbol: EJK85777.1
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase, class II; PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II.


ensembl_gene_id: PMI04_00738
symbol: EJK85781.1
gene_biotype: protein_coding
description:
  Glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain, FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase; Belongs to the FGGY kinase family.


ensembl_gene_id: PMI04_00743
symbol: EJK85587.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI04_00747
symbol: EJK85591.1
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: PMI04_00748
symbol: mltG
gene_biotype: protein_coding
description:
  Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: PMI04_00756
symbol: EJK85600.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for monomeric catechols; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: PMI04_00760
symbol: EJK85604.1
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component; PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulfonates family.


ensembl_gene_id: PMI04_00762
symbol: EJK85606.1
gene_biotype: protein_coding
description:
  Phosphoglycerate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.


ensembl_gene_id: PMI04_00764
symbol: EJK85608.1
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI04_00765
symbol: ssuB
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI04_00766
symbol: EJK85610.1
gene_biotype: protein_coding
description:
  Putative metal-dependent enzyme of the double-stranded beta helix superfamily; PFAM: Cysteine dioxygenase type I.


ensembl_gene_id: PMI04_00769
symbol: EJK85613.1
gene_biotype: protein_coding
description:
  PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulfonates family.


ensembl_gene_id: PMI04_00770
symbol: EJK85614.1
gene_biotype: protein_coding
description:
  Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain.


ensembl_gene_id: PMI04_00772
symbol: EJK85616.1
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family.


ensembl_gene_id: PMI04_00774
symbol: EJK85618.1
gene_biotype: protein_coding
description:
  Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; PFAM: Glycosyl hydrolase family 1; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: PMI04_00780
symbol: EJK85624.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for monomeric catechols; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI04_00784
symbol: EJK85628.1
gene_biotype: protein_coding
description:
  PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: PMI04_00788
symbol: rlmJ
gene_biotype: protein_coding
description:
  Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA.


ensembl_gene_id: PMI04_00803
symbol: EJK85647.1
gene_biotype: protein_coding
description:
  Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.


ensembl_gene_id: PMI04_00806
symbol: EJK85650.1
gene_biotype: protein_coding
description:
  Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase, HsdM N-terminal domain.


ensembl_gene_id: PMI04_00808
symbol: EJK85651.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Domain of unknown function (DUF404), Domain of unknown function (DUF407).


ensembl_gene_id: PMI04_00810
symbol: EJK85653.1
gene_biotype: protein_coding
description:
  Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily, Bacterial transglutaminase-like N-terminal region.


ensembl_gene_id: PMI04_00817
symbol: EJK85660.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain, Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: pyridoxal-dependent decarboxylase, exosortase A system-associated.


ensembl_gene_id: PMI04_00818
symbol: EJK85661.1
gene_biotype: protein_coding
description:
  PFAM: Polysaccharide biosynthesis/export protein; TIGRFAM: putative polysaccharide export protein, PEP-CTERM sytem-associated.


ensembl_gene_id: PMI04_00819
symbol: EJK85662.1
gene_biotype: protein_coding
description:
  PFAM: Chain length determinant protein; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.


ensembl_gene_id: PMI04_00820
symbol: EJK85663.1
gene_biotype: protein_coding
description:
  ATPase involved in chromosome partitioning; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: exopolysaccharide/PEPCTERM locus tyrosine autokinase.


ensembl_gene_id: PMI04_00822
symbol: EJK85665.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized conserved protein (DUF2075); TIGRFAM: putative secretion ATPase, PEP-CTERM locus subfamily.


ensembl_gene_id: PMI04_00823
symbol: EJK85666.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF3473), Polysaccharide deacetylase; TIGRFAM: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily.


ensembl_gene_id: PMI04_00827
symbol: EJK85670.1
gene_biotype: protein_coding
description:
  PFAM: Transmembrane exosortase (Exosortase_EpsH), Protein of unknown function (DUF3485); TIGRFAM: EpsI family protein, exosortase/archaeosortase family protein, exosortase A, exosortase.


ensembl_gene_id: PMI04_00828
symbol: EJK85671.1
gene_biotype: protein_coding
description:
  PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing), exosortase A system-associated amidotransferase 1.


ensembl_gene_id: PMI04_00829
symbol: EJK85672.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.


ensembl_gene_id: PMI04_00837
symbol: EJK85680.1
gene_biotype: protein_coding
description:
  Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase.


ensembl_gene_id: PMI04_00838
symbol: EJK85681.1
gene_biotype: protein_coding
description:
  Threonine dehydratase, medium form; PFAM: ACT domain, Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine dehydratase, medium form.


ensembl_gene_id: PMI04_00839
symbol: bpt
gene_biotype: protein_coding
description:
  Putative arginyl-tRNA:protein arginylyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: PMI04_00840
symbol: EJK85683.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain, GGDEF domain, PAS fold; TIGRFAM: PAS domain S-box, diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI04_00864
symbol: nhaA
gene_biotype: protein_coding
description:
  Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: PMI04_00868
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: PMI04_00870
symbol: EJK85469.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain, Electron transfer flavoprotein FAD-binding domain.


ensembl_gene_id: PMI04_00881
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: PMI04_00885
symbol: EJK85484.1
gene_biotype: protein_coding
description:
  Response regulator of the LytR/AlgR family; PFAM: Response regulator receiver domain, LytTr DNA-binding domain.


ensembl_gene_id: PMI04_00886
symbol: EJK85485.1
gene_biotype: protein_coding
description:
  Putative regulator of cell autolysis; PFAM: Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: PMI04_00918
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: PMI04_00919
symbol: EJK85405.1
gene_biotype: protein_coding
description:
  Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.


ensembl_gene_id: PMI04_00920
symbol: dapD
gene_biotype: protein_coding
description:
  PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: PMI04_00921
symbol: EJK85407.1
gene_biotype: protein_coding
description:
  Pyrimidine 5''-nucleotidase; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, pyrimidine 5'-nucleotidase.


ensembl_gene_id: PMI04_00922
symbol: EJK85408.1
gene_biotype: protein_coding
description:
  TIGR00730 family protein; PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00730 family protein; Belongs to the LOG family.


ensembl_gene_id: PMI04_00924
symbol: EJK85410.1
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: PMI04_00925
symbol: EJK85411.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase.


ensembl_gene_id: PMI04_00928
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: PMI04_00932
symbol: EJK85418.1
gene_biotype: protein_coding
description:
  PFAM: Sodium:dicarboxylate symporter family; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: PMI04_00933
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: PMI04_00934
symbol: EJK85420.1
gene_biotype: protein_coding
description:
  DnaJ-class molecular chaperone with C-terminal Zn finger domain-containing protein; PFAM: DnaJ C terminal region, DnaJ domain.


ensembl_gene_id: PMI04_00935
symbol: EJK85421.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN).


ensembl_gene_id: PMI04_00937
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: PMI04_00942
symbol: EJK85428.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecQ; PFAM: Helicase conserved C-terminal domain, RQC domain, HRDC domain, DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ, ATP-dependent DNA helicase, RecQ family.


ensembl_gene_id: PMI04_00949
symbol: EJK85334.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in Fe-S cluster assembly, permease component; PFAM: Uncharacterized protein family (UPF0051).


ensembl_gene_id: PMI04_00950
symbol: EJK85335.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase-like protein, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: PMI04_00951
symbol: EJK85336.1
gene_biotype: protein_coding
description:
  FeS assembly SUF system protein; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein.


ensembl_gene_id: PMI04_00952
symbol: EJK85337.1
gene_biotype: protein_coding
description:
  PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.


ensembl_gene_id: PMI04_00960
symbol: acsA
gene_biotype: protein_coding
description:
  acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: PMI04_00965
symbol: EJK85349.1
gene_biotype: protein_coding
description:
  AAA family ATPase, CDC48 subfamily; PFAM: ATPase family associated with various cellular activities (AAA), Cell division protein 48 (CDC48), N-terminal domain, Cell division protein 48 (CDC48), domain 2; TIGRFAM: AAA family ATPase, CDC48 subfamily; Belongs to the AAA ATPase family.


ensembl_gene_id: PMI04_00967
symbol: EJK85351.1
gene_biotype: protein_coding
description:
  DNA-binding protein with HTH domain-containing protein; PFAM: Bacterial regulatory proteins, luxR family.


ensembl_gene_id: PMI04_00968
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: PMI04_00969
symbol: kdsA
gene_biotype: protein_coding
description:
  PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; Belongs to the KdsA family.


ensembl_gene_id: PMI04_00974
symbol: EJK85358.1
gene_biotype: protein_coding
description:
  Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Bacterial transglutaminase-like N-terminal region, Transglutaminase-like superfamily.


ensembl_gene_id: PMI04_00975
symbol: EJK85359.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Bacterial domain of unknown function (DUF403), Domain of unknown function (DUF404), Domain of unknown function (DUF407).


ensembl_gene_id: PMI04_00976
symbol: EJK85360.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Bacterial transglutaminase-like N-terminal region, Transglutaminase-like superfamily, Putative amidoligase enzyme (DUF2126).


ensembl_gene_id: PMI04_00977
symbol: EJK85361.1
gene_biotype: protein_coding
description:
  Serine protease, S9A family peptidase; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain, Prolyl oligopeptidase family.


ensembl_gene_id: PMI04_00984
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: PMI04_00994
symbol: EJK85377.1
gene_biotype: protein_coding
description:
  Fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly; PFAM: ABC transporter transmembrane region, ABC transporter.


ensembl_gene_id: PMI04_01002
symbol: EJK85238.1
gene_biotype: protein_coding
description:
  Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats).


ensembl_gene_id: PMI04_01011
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: PMI04_01012
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: PMI04_01014
symbol: trmB
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: PMI04_01015
symbol: EJK85251.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: PMI04_01027
symbol: EJK85263.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: PMI04_01034
symbol: EJK85270.1
gene_biotype: protein_coding
description:
  Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PMI04_01043
symbol: EJK84949.1
gene_biotype: protein_coding
description:
  N-acetyl-beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain, Glycosyl hydrolase family 20, domain 2.


ensembl_gene_id: PMI04_01057
symbol: EJK84963.1
gene_biotype: protein_coding
description:
  Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI04_01061
symbol: EJK84967.1
gene_biotype: protein_coding
description:
  PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA).


ensembl_gene_id: PMI04_01063
symbol: EJK84969.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain.


ensembl_gene_id: PMI04_01065
symbol: EJK84971.1
gene_biotype: protein_coding
description:
  Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase.


ensembl_gene_id: PMI04_01068
symbol: EJK84974.1
gene_biotype: protein_coding
description:
  PFAM: Polysaccharide biosynthesis/export protein, SLBB domain; TIGRFAM: polysaccharide export protein EpsE.


ensembl_gene_id: PMI04_01072
symbol: EJK84978.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: PMI04_01083
symbol: EJK84989.1
gene_biotype: protein_coding
description:
  Outer membrane cobalamin receptor protein; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI04_01086
symbol: EJK84992.1
gene_biotype: protein_coding
description:
  Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain.


ensembl_gene_id: PMI04_01103
symbol: EJK85009.1
gene_biotype: protein_coding
description:
  Serine acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase.


ensembl_gene_id: PMI04_01108
symbol: EJK85014.1
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI04_01112
symbol: EJK85018.1
gene_biotype: protein_coding
description:
  PFAM: GAF domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI04_01114
symbol: EJK85020.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671; Belongs to the UPF0178 family.


ensembl_gene_id: PMI04_01118
symbol: EJK85024.1
gene_biotype: protein_coding
description:
  Kef-type K+ transport system, membrane component; PFAM: TrkA-N domain, Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family.


ensembl_gene_id: PMI04_01121
symbol: EJK85027.1
gene_biotype: protein_coding
description:
  PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC.


ensembl_gene_id: PMI04_01122
symbol: EJK85028.1
gene_biotype: protein_coding
description:
  Cytidyltransferase-related enzyme; TIGRFAM: nicotinamide-nucleotide adenylyltransferase, NadR type, cytidyltransferase-related domain.


ensembl_gene_id: PMI04_01123
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: PMI04_01128
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: PMI04_01129
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: PMI04_01130
symbol: EJK85036.1
gene_biotype: protein_coding
description:
  PFAM: Riboflavin kinase, FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family.


ensembl_gene_id: PMI04_01131
symbol: EJK85037.1
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: PMI04_01132
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, PurK protein; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: PMI04_01133
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, PurE protein; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: PMI04_01134
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase, BPG-dependent, family 1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: PMI04_01135
symbol: EJK85041.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type, signal peptide peptidase SppA, 67K type.


ensembl_gene_id: PMI04_01137
symbol: EJK85043.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Response regulator receiver domain, HWE histidine kinase, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI04_01138
symbol: EJK85044.1
gene_biotype: protein_coding
description:
  Methylase of chemotaxis methyl-accepting protein; PFAM: CheR methyltransferase, SAM binding domain, CheR methyltransferase, all-alpha domain.


ensembl_gene_id: PMI04_01139
symbol: EJK85045.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI04_01141
symbol: EJK85047.1
gene_biotype: protein_coding
description:
  Beta-galactosidase/beta-glucuronidase; PFAM: F5/8 type C domain, domain, Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: PMI04_01148
symbol: EJK85054.1
gene_biotype: protein_coding
description:
  Putative dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain, Oxidoreductase family, NAD-binding Rossmann fold.


ensembl_gene_id: PMI04_01151
symbol: EJK85057.1
gene_biotype: protein_coding
description:
  Putative protein, possibly involved in aromatic compounds catabolism; PFAM: Thioesterase superfamily.


ensembl_gene_id: PMI04_01154
symbol: EJK85060.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein, CofH subfamily; PFAM: Radical SAM superfamily; TIGRFAM: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit, radical SAM domain protein, CofH subfamily, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit.


ensembl_gene_id: PMI04_01159
symbol: EJK85065.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: TAT (twin-arginine translocation) pathway signal sequence, Major Facilitator Superfamily.


ensembl_gene_id: PMI04_01161
symbol: EJK85067.1
gene_biotype: protein_coding
description:
  PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus, Cytochrome c, Pyrrolo-quinoline quinone coenzyme C-terminus, PQQ enzyme repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family.


ensembl_gene_id: PMI04_01162
symbol: EJK85068.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase family, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: PMI04_01175
symbol: EJK85081.1
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme GlgX; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain), Alpha amylase, catalytic domain; TIGRFAM: glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: PMI04_01177
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: PMI04_01178
symbol: glgB
gene_biotype: protein_coding
description:
  Alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: PMI04_01179
symbol: EJK85085.1
gene_biotype: protein_coding
description:
  Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: PMI04_01184
symbol: EJK85090.1
gene_biotype: protein_coding
description:
  Putative protein with a C-terminal OMP (outer membrane protein) domain-containing protein; PFAM: Autotransporter beta-domain.


ensembl_gene_id: PMI04_01185
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: PMI04_01187
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: PMI04_01188
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: PMI04_01190
symbol: EJK85096.1
gene_biotype: protein_coding
description:
  RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: PMI04_01196
symbol: EJK85102.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Putative peptidoglycan binding domain, L,D-transpeptidase catalytic domain.


ensembl_gene_id: PMI04_01198
symbol: EJK85104.1
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase SerB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like, phosphoserine phosphatase SerB.


ensembl_gene_id: PMI04_01199
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA isopentenyltransferase MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: PMI04_01200
symbol: EJK85106.1
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type.


ensembl_gene_id: PMI04_01202
symbol: EJK85108.1
gene_biotype: protein_coding
description:
  PFAM: Small subunit of acetolactate synthase, ACT domain; TIGRFAM: acetolactate synthase, small subunit.


ensembl_gene_id: PMI04_01203
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: PMI04_01206
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: PMI04_01213
symbol: EJK85119.1
gene_biotype: protein_coding
description:
  Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; PFAM: ABC transporter.


ensembl_gene_id: PMI04_01215
symbol: EJK84901.1
gene_biotype: protein_coding
description:
  Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Cyclic nucleotide-binding domain.


ensembl_gene_id: PMI04_01216
symbol: rutA
gene_biotype: protein_coding
description:
  Pyrimidine utilization protein A; Catalyzes the pyrimidine ring opening between N-3 and C-4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate.


ensembl_gene_id: PMI04_01217
symbol: rutD
gene_biotype: protein_coding
description:
  Pyrimidine utilization protein D; May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation. Belongs to the AB hydrolase superfamily. Hydrolase RutD family.


ensembl_gene_id: PMI04_01218
symbol: EJK84904.1
gene_biotype: protein_coding
description:
  Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative, pyrimidine utilization protein C.


ensembl_gene_id: PMI04_01219
symbol: rutB
gene_biotype: protein_coding
description:
  Pyrimidine utilization protein B; In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2; Belongs to the isochorismatase family. RutB subfamily.


ensembl_gene_id: PMI04_01220
symbol: EJK84906.1
gene_biotype: protein_coding
description:
  Zn-dependent dipeptidase, microsomal dipeptidase; PFAM: Membrane dipeptidase (Peptidase family M19).


ensembl_gene_id: PMI04_01221
symbol: EJK84907.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, beta-lactamase class C; PFAM: Beta-lactamase, Domain of unknown function (DUF3471).


ensembl_gene_id: PMI04_01235
symbol: EJK84872.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI04_01253
symbol: EJK84754.1
gene_biotype: protein_coding
description:
  PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: PMI04_01255
symbol: EJK84756.1
gene_biotype: protein_coding
description:
  Alpha-1,2-mannosidase, putative; PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative.


ensembl_gene_id: PMI04_01269
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: PMI04_01279
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: PMI04_01280
symbol: EJK84630.1
gene_biotype: protein_coding
description:
  Putative protein involved in formation of curli polymers; PFAM: Curli production assembly/transport component CsgG.


ensembl_gene_id: PMI04_01283
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase family protein; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: PMI04_01284
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: PMI04_01285
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: PMI04_01287
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: PMI04_01288
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18, bacterial type; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: PMI04_01289
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: PMI04_01290
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: PMI04_01291
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: PMI04_01292
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: PMI04_01293
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24, bacterial/organelle; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: PMI04_01294
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14, bacterial/organelle; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: PMI04_01295
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: PMI04_01296
symbol: rpmC
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: PMI04_01297
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16, bacterial/organelle; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: PMI04_01298
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3, bacterial type; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: PMI04_01299
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22, bacterial type; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: PMI04_01300
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19, bacterial/organelle; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: PMI04_01301
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2, bacterial/organellar; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: PMI04_01302
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: PMI04_01304
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3, bacterial; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: PMI04_01305
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10, bacterial/organelle; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: PMI04_01306
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor TU; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: PMI04_01307
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]


ensembl_gene_id: PMI04_01308
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7, bacterial/organelle; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: PMI04_01309
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12, bacterial/organelle; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: PMI04_01312
symbol: EJK84662.1
gene_biotype: protein_coding
description:
  Integral membrane protein CcmA involved in cell shape determination; PFAM: Protein of unknown function, DUF583.


ensembl_gene_id: PMI04_01313
symbol: EJK84663.1
gene_biotype: protein_coding
description:
  Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein.


ensembl_gene_id: PMI04_01314
symbol: rlmE
gene_biotype: protein_coding
description:
  23S rRNA methylase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: PMI04_01317
symbol: EJK84667.1
gene_biotype: protein_coding
description:
  Na+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: PMI04_01320
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: PMI04_01322
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: PMI04_01327
symbol: EJK84676.1
gene_biotype: protein_coding
description:
  Putative secretion activating protein; PFAM: Predicted Peptidoglycan domain, Predicted lysozyme (DUF847).


ensembl_gene_id: PMI04_01332
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: PMI04_01333
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: PMI04_01334
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PMI04_01341
symbol: EJK84690.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI04_01348
symbol: EJK84697.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein.


ensembl_gene_id: PMI04_01349
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: PMI04_01350
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: PMI04_01351
symbol: rlmH
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: PMI04_01355
symbol: EJK84704.1
gene_biotype: protein_coding
description:
  C-terminal processing peptidase; PFAM: Peptidase family S41, PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); Belongs to the peptidase S41A family.


ensembl_gene_id: PMI04_01357
symbol: coq7
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis protein COQ7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.


ensembl_gene_id: PMI04_01364
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: PMI04_01365
symbol: EJK84713.1
gene_biotype: protein_coding
description:
  PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase small subunit family protein, proteobacterial, glutamate synthases, NADH/NADPH, small subunit.


ensembl_gene_id: PMI04_01371
symbol: EJK84543.1
gene_biotype: protein_coding
description:
  Sn-1,2-diacylglycerol ethanolamine/choline phosphotransferase; PFAM: CDP-alcohol phosphatidyltransferase.


ensembl_gene_id: PMI04_01373
symbol: EJK84545.1
gene_biotype: protein_coding
description:
  Sulfite reductase, alpha subunit (flavoprotein); PFAM: Flavodoxin, Oxidoreductase NAD-binding domain.


ensembl_gene_id: PMI04_01411
symbol: EJK84459.1
gene_biotype: protein_coding
description:
  ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain, Helicase associated domain (HA2), DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB.


ensembl_gene_id: PMI04_01413
symbol: EJK84461.1
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: PMI04_01414
symbol: EJK84462.1
gene_biotype: protein_coding
description:
  PFAM: Chorismate mutase type II; TIGRFAM: monofunctional chorismate mutase, alpha proteobacterial type.


ensembl_gene_id: PMI04_01419
symbol: EJK84467.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in cytochrome c biogenesis, permease component; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.


ensembl_gene_id: PMI04_01420
symbol: EJK84468.1
gene_biotype: protein_coding
description:
  Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI04_01424
symbol: EJK84472.1
gene_biotype: protein_coding
description:
  PFAM: Patatin-like phospholipase, Protein of unknown function (DUF3376); TIGRFAM: patatin-related protein.


ensembl_gene_id: PMI04_01426
symbol: EJK84362.1
gene_biotype: protein_coding
description:
  TIGR02300 family protein; PFAM: Protein of unknown function (FYDLN_acid); TIGRFAM: TIGR02300 family protein.


ensembl_gene_id: PMI04_01427
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: PMI04_01429
symbol: EJK84365.1
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: PMI04_01430
symbol: EJK84366.1
gene_biotype: protein_coding
description:
  Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: PMI04_01434
symbol: EJK84369.1
gene_biotype: protein_coding
description:
  Kef-type K+ transport system, membrane component; PFAM: TrkA-N domain, Sodium/hydrogen exchanger family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: PMI04_01439
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: PMI04_01443
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: PMI04_01453
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: PMI04_01457
symbol: EJK84391.1
gene_biotype: protein_coding
description:
  Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: PMI04_01458
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: PMI04_01459
symbol: EJK84393.1
gene_biotype: protein_coding
description:
  DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: PMI04_01460
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: PMI04_01464
symbol: EJK84397.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase family protein; PFAM: Aminotransferase class-V; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_01489
symbol: EJK84336.1
gene_biotype: protein_coding
description:
  PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase.


ensembl_gene_id: PMI04_01492
symbol: EJK84339.1
gene_biotype: protein_coding
description:
  N-carbamoylputrescine amidase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase.


ensembl_gene_id: PMI04_01494
symbol: EJK84341.1
gene_biotype: protein_coding
description:
  Peptidylarginine deiminase-like enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.


ensembl_gene_id: PMI04_01502
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: PMI04_01504
symbol: trmJ
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: PMI04_01505
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: PMI04_01506
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: PMI04_01507
symbol: EJK84354.1
gene_biotype: protein_coding
description:
  PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B, sugar-phosphate isomerases, RpiB/LacA/LacB family.


ensembl_gene_id: PMI04_01510
symbol: EJK84279.1
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase-like protein; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase.


ensembl_gene_id: PMI04_01512
symbol: EJK84281.1
gene_biotype: protein_coding
description:
  PFAM: Demethylmenaquinone methyltransferase; TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase.


ensembl_gene_id: PMI04_01518
symbol: EJK84287.1
gene_biotype: protein_coding
description:
  Altronate dehydratase; PFAM: SAF domain, D-galactarate dehydratase / Altronate hydrolase, C terminus.


ensembl_gene_id: PMI04_01526
symbol: EJK84227.1
gene_biotype: protein_coding
description:
  Type IV secretory pathway, protease TraF; PFAM: Peptidase S26; TIGRFAM: conjugative transfer signal peptidase TraF.


ensembl_gene_id: PMI04_01533
symbol: EJK84234.1
gene_biotype: protein_coding
description:
  P-type conjugative transfer ATPase TrbB; PFAM: Type II/IV secretion system protein; TIGRFAM: P-type conjugative transfer ATPase TrbB.


ensembl_gene_id: PMI04_01536
symbol: EJK84237.1
gene_biotype: protein_coding
description:
  PFAM: CagE, TrbE, VirB family, component of type IV transporter system; TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family.


ensembl_gene_id: PMI04_01539
symbol: EJK84240.1
gene_biotype: protein_coding
description:
  PFAM: TrbL/VirB6 plasmid conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbL.


ensembl_gene_id: PMI04_01546
symbol: EJK84204.1
gene_biotype: protein_coding
description:
  CMP-2-keto-3-deoxyoctulosonic acid synthetase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase.


ensembl_gene_id: PMI04_01547
symbol: EJK84205.1
gene_biotype: protein_coding
description:
  KpsF/GutQ family protein; PFAM: CBS domain, SIS domain; TIGRFAM: KpsF/GutQ family protein; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: PMI04_01554
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: PMI04_01556
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: PMI04_01558
symbol: EJK84216.1
gene_biotype: protein_coding
description:
  Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family.


ensembl_gene_id: PMI04_01591
symbol: EJK84140.1
gene_biotype: protein_coding
description:
  Putative enzyme involved in biosynthesis of extracellular polysaccharide; PFAM: Antibiotic biosynthesis monooxygenase.


ensembl_gene_id: PMI04_01596
symbol: EJK84145.1
gene_biotype: protein_coding
description:
  ATPase and permease component of ABC-type transporter involved in cytochrome bd biosynthesis; PFAM: ABC transporter transmembrane region, ABC transporter.


ensembl_gene_id: PMI04_01597
symbol: EJK84146.1
gene_biotype: protein_coding
description:
  Fused ATPase/permease component of ABC-type transporter involved in cytochrome bd biogenesis; PFAM: ABC transporter.


ensembl_gene_id: PMI04_01602
symbol: EJK84151.1
gene_biotype: protein_coding
description:
  Putative protein, possibly involved in utilization of glycolate and propanediol; PFAM: Domain of unknown function (DUF336).


ensembl_gene_id: PMI04_01604
symbol: EJK84153.1
gene_biotype: protein_coding
description:
  2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family.


ensembl_gene_id: PMI04_01617
symbol: EJK84166.1
gene_biotype: protein_coding
description:
  PFAM: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit.


ensembl_gene_id: PMI04_01620
symbol: EJK84052.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.


ensembl_gene_id: PMI04_01623
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase, subfamily 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: PMI04_01636
symbol: EJK84068.1
gene_biotype: protein_coding
description:
  Psp operon transcriptional activator PspF; PFAM: Bacterial regulatory protein, Fis family, Sigma-54 interaction domain; TIGRFAM: psp operon transcriptional activator PspF.


ensembl_gene_id: PMI04_01637
symbol: EJK84069.1
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.


ensembl_gene_id: PMI04_01638
symbol: EJK84070.1
gene_biotype: protein_coding
description:
  PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family, tol-pal system-associated acyl-CoA thioesterase.


ensembl_gene_id: PMI04_01642
symbol: tolB
gene_biotype: protein_coding
description:
  Tol-pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PMI04_01643
symbol: pal
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PMI04_01663
symbol: rhmD
gene_biotype: protein_coding
description:
  Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).


ensembl_gene_id: PMI04_01667
symbol: EJK84002.1
gene_biotype: protein_coding
description:
  High potential iron-sulfur protein; Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria; Belongs to the high-potential iron-sulfur protein (HiPIP) family.


ensembl_gene_id: PMI04_01674
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: PMI04_01675
symbol: edd
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.


ensembl_gene_id: PMI04_01676
symbol: EJK84010.1
gene_biotype: protein_coding
description:
  PFAM: Glucokinase; TIGRFAM: glucokinase, proteobacterial type; Belongs to the bacterial glucokinase family.


ensembl_gene_id: PMI04_01689
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: PMI04_01698
symbol: EJK83941.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Domain of unknown function (DUF3390), Uncharacterized ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein.


ensembl_gene_id: PMI04_01705
symbol: vapC
gene_biotype: protein_coding
description:
  Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: PMI04_01709
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: PMI04_01711
symbol: EJK83928.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase.


ensembl_gene_id: PMI04_01714
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: PMI04_01716
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaC; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: PMI04_01717
symbol: EJK83934.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain-containing protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: PMI04_01718
symbol: lexA
gene_biotype: protein_coding
description:
  SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: PMI04_01722
symbol: EJK83876.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF1592), Protein of unknown function (DUF1587), Protein of unknown function (DUF1588), Protein of unknown function (DUF1595).


ensembl_gene_id: PMI04_01727
symbol: EJK83881.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein.


ensembl_gene_id: PMI04_01728
symbol: EJK83882.1
gene_biotype: protein_coding
description:
  UDP-glucose-4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: PMI04_01729
symbol: EJK83883.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase family, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.


ensembl_gene_id: PMI04_01742
symbol: EJK83896.1
gene_biotype: protein_coding
description:
  ABC-type polysaccharide/polyol phosphate export system protein, permease component; PFAM: ABC-2 type transporter.


ensembl_gene_id: PMI04_01748
symbol: EJK83837.1
gene_biotype: protein_coding
description:
  Putative beta-xylosidase; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: PMI04_01750
symbol: EJK83839.1
gene_biotype: protein_coding
description:
  GTP-binding protein TypA/BipA; PFAM: Elongation factor Tu domain 2, Elongation factor G C-terminus, Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA, small GTP-binding protein domain.


ensembl_gene_id: PMI04_01752
symbol: EJK83841.1
gene_biotype: protein_coding
description:
  Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.


ensembl_gene_id: PMI04_01754
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: PMI04_01756
symbol: EJK83845.1
gene_biotype: protein_coding
description:
  Membrane carboxypeptidase/penicillin-binding protein; PFAM: Penicillin binding protein transpeptidase domain.


ensembl_gene_id: PMI04_01760
symbol: argG
gene_biotype: protein_coding
description:
  PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: PMI04_01765
symbol: pyrB
gene_biotype: protein_coding
description:
  PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain, Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: PMI04_01766
symbol: EJK83731.1
gene_biotype: protein_coding
description:
  Dihydroorotase-like cyclic amidohydrolase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type.


ensembl_gene_id: PMI04_01769
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: PMI04_01770
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: PMI04_01771
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: PMI04_01772
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: PMI04_01773
symbol: EJK83737.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, DbpA RNA binding domain, DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: PMI04_01774
symbol: EJK83738.1
gene_biotype: protein_coding
description:
  Kef-type K+ transport system, predicted NAD-binding component; PFAM: TrkA-N domain, Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family.


ensembl_gene_id: PMI04_01776
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: PMI04_01777
symbol: rpmA
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: PMI04_01781
symbol: obg
gene_biotype: protein_coding
description:
  Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: PMI04_01782
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: PMI04_01785
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: PMI04_01788
symbol: cysN
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: PMI04_01789
symbol: EJK83679.1
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: sulfate adenylyltransferase, small subunit.


ensembl_gene_id: PMI04_01792
symbol: EJK83676.1
gene_biotype: protein_coding
description:
  Dipeptidyl aminopeptidase/acylaminoacyl peptidase; PFAM: Prolyl oligopeptidase family, WD40-like Beta Propeller Repeat.


ensembl_gene_id: PMI04_01794
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: PMI04_01795
symbol: EJK83599.1
gene_biotype: protein_coding
description:
  PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); Belongs to the citrate synthase family.


ensembl_gene_id: PMI04_01801
symbol: EJK83605.1
gene_biotype: protein_coding
description:
  Molecular chaperone; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: PMI04_01803
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: PMI04_01807
symbol: EJK83594.1
gene_biotype: protein_coding
description:
  PFAM: Helicase conserved C-terminal domain, DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG.


ensembl_gene_id: PMI04_01810
symbol: EJK83568.1
gene_biotype: protein_coding
description:
  PFAM: Phage conserved hypothetical protein BR0599; TIGRFAM: phage conserved hypothetical protein BR0599.


ensembl_gene_id: PMI04_01820
symbol: EJK83495.1
gene_biotype: protein_coding
description:
  5-keto 4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.


ensembl_gene_id: PMI04_01847
symbol: EJK83485.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized conserved protein (DUF2163); TIGRFAM: phage conserved hypothetical protein BR0599.


ensembl_gene_id: PMI04_01848
symbol: EJK83486.1
gene_biotype: protein_coding
description:
  TIGR02217 family protein; PFAM: Conserved hypothetical protein 2217 (DUF2460); TIGRFAM: TIGR02217 family protein.


ensembl_gene_id: PMI04_02003
symbol: EJK83401.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II, Phosphoglucomutase/phosphomannomutase, C-terminal domain, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.


ensembl_gene_id: PMI04_02004
symbol: EJK83402.1
gene_biotype: protein_coding
description:
  Penicillin V acylase-like amidase; PFAM: Linear amide C-N hydrolases, choloylglycine hydrolase family.


ensembl_gene_id: PMI04_02005
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: PMI04_02006
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: PMI04_02009
symbol: glyQ
gene_biotype: protein_coding
description:
  PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit.


ensembl_gene_id: PMI04_02010
symbol: glyS
gene_biotype: protein_coding
description:
  PFAM: Glycyl-tRNA synthetase beta subunit, DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit.


ensembl_gene_id: PMI04_02011
symbol: EJK83409.1
gene_biotype: protein_coding
description:
  Pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, TIM barrel domain, PEP-utilising enzyme, mobile domain, Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PMI04_02016
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: PMI04_02021
symbol: astB
gene_biotype: protein_coding
description:
  Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).


ensembl_gene_id: PMI04_02022
symbol: EJK83418.1
gene_biotype: protein_coding
description:
  PFAM: Arginine N-succinyltransferase beta subunit; TIGRFAM: arginine and ornithine succinyltransferase subunits.


ensembl_gene_id: PMI04_02025
symbol: rppH
gene_biotype: protein_coding
description:
  NTP pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: PMI04_02029
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: PMI04_02030
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: PMI04_02032
symbol: ccmE
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: PMI04_02034
symbol: EJK83430.1
gene_biotype: protein_coding
description:
  Thiol-disulfide isomerase-like thioredoxin; PFAM: Redoxin; TIGRFAM: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily.


ensembl_gene_id: PMI04_02037
symbol: kup
gene_biotype: protein_coding
description:
  K+ transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: PMI04_02038
symbol: EJK83434.1
gene_biotype: protein_coding
description:
  Molecular chaperone (small heat shock protein); PFAM: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: PMI04_02039
symbol: EJK83435.1
gene_biotype: protein_coding
description:
  PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.


ensembl_gene_id: PMI04_02040
symbol: lolD
gene_biotype: protein_coding
description:
  ABC-type antimicrobial peptide transport system, ATPase component; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.


ensembl_gene_id: PMI04_02043
symbol: EJK83439.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial DNA polymerase III alpha subunit, PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc).


ensembl_gene_id: PMI04_02046
symbol: EJK83442.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: PMI04_02051
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: PMI04_02054
symbol: nnrD
gene_biotype: protein_coding
description:
  yjeF-like protein, hydroxyethylthiazole kinase-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate d [...]


ensembl_gene_id: PMI04_02055
symbol: EJK83451.1
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; PFAM: tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: PMI04_02056
symbol: EJK83452.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain, Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: PMI04_02057
symbol: EJK83453.1
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.


ensembl_gene_id: PMI04_02059
symbol: EJK83455.1
gene_biotype: protein_coding
description:
  DNA ligase, ATP-dependent, PP_1105 family; PFAM: ATP dependent DNA ligase domain, DNA ligase N terminus, ATP dependent DNA ligase C terminal region; TIGRFAM: DNA ligase, ATP-dependent, PP_1105 family.


ensembl_gene_id: PMI04_02061
symbol: EJK83457.1
gene_biotype: protein_coding
description:
  S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase; PFAM: Protein of unknown function (DUF3419).


ensembl_gene_id: PMI04_02066
symbol: EJK83462.1
gene_biotype: protein_coding
description:
  5-aminolevulinic acid synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase, 5-aminolevulinic acid synthase.


ensembl_gene_id: PMI04_02068
symbol: EJK83464.1
gene_biotype: protein_coding
description:
  Acetyltransferase (isoleucine patch superfamily); PFAM: Maltose acetyltransferase, Bacterial transferase hexapeptide (three repeats).


ensembl_gene_id: PMI04_02069
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: PMI04_02071
symbol: EJK83467.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized protein family (UPF0259), Membrane domain of glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: PMI04_02075
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: PMI04_02076
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: PMI04_02078
symbol: EJK83354.1
gene_biotype: protein_coding
description:
  Putative nucleic-acid-binding protein implicated in transcription termination; PFAM: Protein of unknown function (DUF448).


ensembl_gene_id: PMI04_02079
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: PMI04_02080
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: PMI04_02085
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine 55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: PMI04_02086
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: PMI04_02087
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: PMI04_02093
symbol: EJK83315.1
gene_biotype: protein_coding
description:
  Molybdopterin-dependent oxidoreductase alpha subunit; PFAM: Molybdopterin oxidoreductase, Molydopterin dinucleotide binding domain; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: PMI04_02094
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: PMI04_02101
symbol: EJK83323.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: PMI04_02102
symbol: EJK83324.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PFAM: Aminotransferase class IV; TIGRFAM: D-amino acid aminotransferase.


ensembl_gene_id: PMI04_02114
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: PMI04_02116
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: PMI04_02130
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: PMI04_02136
symbol: der
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: PMI04_02139
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: PMI04_02142
symbol: EJK83108.1
gene_biotype: protein_coding
description:
  Putative esterase of the alpha/beta hydrolase fold containing protein; PFAM: Alpha/Beta hydrolase family of unknown function (DUF1234).


ensembl_gene_id: PMI04_02148
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase, F1 epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: PMI04_02149
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase, F1 beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: PMI04_02150
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase, F1 gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: PMI04_02152
symbol: atpA
gene_biotype: protein_coding
description:
  Proton translocating ATP synthase, F1 alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: PMI04_02153
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase, F1 delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: PMI04_02155
symbol: EJK83121.1
gene_biotype: protein_coding
description:
  PFAM: Metal binding domain of Ada, 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase.


ensembl_gene_id: PMI04_02160
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N'; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: PMI04_02162
symbol: tal
gene_biotype: protein_coding
description:
  Fructose-6-phosphate aldolase, TalC/MipB family; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: PMI04_02165
symbol: EJK83130.1
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: PMI04_02167
symbol: truA
gene_biotype: protein_coding
description:
  Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: PMI04_02168
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: PMI04_02169
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: PMI04_02170
symbol: EJK83135.1
gene_biotype: protein_coding
description:
  PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PMI04_02177
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: PMI04_02179
symbol: EJK83144.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain, Transcriptional regulatory protein, C terminal; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB.


ensembl_gene_id: PMI04_02180
symbol: EJK83145.1
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: PMI04_02181
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: PMI04_02182
symbol: EJK83147.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstA; PFAM: Binding-protein-dependent transport system inner membrane component, Domain of unknown function (DUF3333); TIGRFAM: phosphate ABC transporter, permease protein PstA.


ensembl_gene_id: PMI04_02183
symbol: EJK83148.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PMI04_02195
symbol: EJK83160.1
gene_biotype: protein_coding
description:
  Amidohydrolase; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain; TIGRFAM: amidohydrolase.


ensembl_gene_id: PMI04_02197
symbol: EJK83162.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized protein family (UPF0156); TIGRFAM: putative addiction module antidote protein, CC2985 family.


ensembl_gene_id: PMI04_02202
symbol: EJK83167.1
gene_biotype: protein_coding
description:
  Putative esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin phospholipase, Patatin-like phospholipase.


ensembl_gene_id: PMI04_02204
symbol: EJK83169.1
gene_biotype: protein_coding
description:
  Glutamine synthetase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transducti [...]


ensembl_gene_id: PMI04_02222
symbol: EJK83187.1
gene_biotype: protein_coding
description:
  Conserved protein of unknown function BmrU; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family.


ensembl_gene_id: PMI04_02226
symbol: EJK83191.1
gene_biotype: protein_coding
description:
  Putative amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.


ensembl_gene_id: PMI04_02227
symbol: EJK83192.1
gene_biotype: protein_coding
description:
  Glutaredoxin, GrxC family; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: PMI04_02234
symbol: EJK83198.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Protein of unknown function (DUF979); overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_02235
symbol: EJK83199.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Protein of unknown function (DUF969); overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_02255
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: PMI04_02260
symbol: EJK83224.1
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: PMI04_02272
symbol: EJK83236.1
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphate synthase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI04_02273
symbol: EJK83237.1
gene_biotype: protein_coding
description:
  Glycosyl/glycerophosphate transferase, teichoic acid biosynthesis; PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase.


ensembl_gene_id: PMI04_02274
symbol: EJK83238.1
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: PMI04_02277
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.


ensembl_gene_id: PMI04_02278
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: PMI04_02279
symbol: EJK83243.1
gene_biotype: protein_coding
description:
  PFAM: Dehydrogenase E1 component, Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component.


ensembl_gene_id: PMI04_02280
symbol: EJK83244.1
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: PMI04_02285
symbol: EJK83249.1
gene_biotype: protein_coding
description:
  2-phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.


ensembl_gene_id: PMI04_02286
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: PMI04_02288
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: PMI04_02290
symbol: EJK83254.1
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, eukaryotic type; Belongs to the isocitrate and isopropylmalate dehydrogenases family.


ensembl_gene_id: PMI04_02291
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase precursor-related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: PMI04_02292
symbol: EJK83256.1
gene_biotype: protein_coding
description:
  Phosphatidylserine synthase; PFAM: CDP-alcohol phosphatidyltransferase 2, CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI04_02294
symbol: rpsB
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: PMI04_02295
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: PMI04_02298
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: PMI04_02299
symbol: EJK83263.1
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: PMI04_02301
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: PMI04_02302
symbol: EJK83266.1
gene_biotype: protein_coding
description:
  Putative membrane-associated Zn-dependent protease; PFAM: Peptidase family M50, PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP.


ensembl_gene_id: PMI04_02303
symbol: bamA
gene_biotype: protein_coding
description:
  Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: PMI04_02305
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: PMI04_02306
symbol: rpmE
gene_biotype: protein_coding
description:
  Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.


ensembl_gene_id: PMI04_02307
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: PMI04_02308
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: PMI04_02311
symbol: xerC
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: PMI04_02312
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: PMI04_02316
symbol: EJK83280.1
gene_biotype: protein_coding
description:
  ADP-ribose pyrophosphatase; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; Belongs to the Nudix hydrolase family.


ensembl_gene_id: PMI04_02317
symbol: EJK83281.1
gene_biotype: protein_coding
description:
  Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: PMI04_02320
symbol: EJK83284.1
gene_biotype: protein_coding
description:
  Methyltransferase family protein; PFAM: Methyltransferase domain; TIGRFAM: biotin biosynthesis protein BioC.


ensembl_gene_id: PMI04_02324
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: PMI04_02326
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: PMI04_02328
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: PMI04_02329
symbol: EJK83293.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: PMI04_02330
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: PMI04_02334
symbol: EJK83298.1
gene_biotype: protein_coding
description:
  PFAM: haemagglutination activity domain; TIGRFAM: filamentous hemagglutinin family N-terminal domain.


ensembl_gene_id: PMI04_02344
symbol: EJK83013.1
gene_biotype: protein_coding
description:
  PFAM: COX Aromatic Rich Motif, Cytochrome C oxidase subunit II, periplasmic domain; TIGRFAM: cytochrome o ubiquinol oxidase subunit II.


ensembl_gene_id: PMI04_02345
symbol: EJK83014.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: PMI04_02347
symbol: EJK83016.1
gene_biotype: protein_coding
description:
  PFAM: Prokaryotic Cytochrome C oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV.


ensembl_gene_id: PMI04_02367
symbol: EJK83035.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI04_02382
symbol: EJK83050.1
gene_biotype: protein_coding
description:
  PFAM: Aconitate B N-terminal domain, Aconitase family (aconitate hydratase), Aconitate hydratase 2 N-terminus.


ensembl_gene_id: PMI04_02396
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.


ensembl_gene_id: PMI04_02405
symbol: EJK82500.1
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase, family 4; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: probable DNA metabolism protein, uracil-DNA glycosylase, family 4, uracil-DNA glycosylase family domain.


ensembl_gene_id: PMI04_02409
symbol: EJK82504.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain, CHASE3 domain.


ensembl_gene_id: PMI04_02411
symbol: EJK82506.1
gene_biotype: protein_coding
description:
  N-methylhydantoinase B/acetone carboxylase, alpha subunit; PFAM: Hydantoinase/oxoprolinase, Hydantoinase B/oxoprolinase, Hydantoinase/oxoprolinase N-terminal region.


ensembl_gene_id: PMI04_02413
symbol: rpsU
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: PMI04_02414
symbol: EJK82509.1
gene_biotype: protein_coding
description:
  PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase, Domain amino terminal to FKBP-type peptidyl-prolyl isomerase.


ensembl_gene_id: PMI04_02418
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: PMI04_02419
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxine 5''-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: PMI04_02420
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: PMI04_02421
symbol: EJK82516.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: PMI04_02422
symbol: EJK82517.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: PMI04_02423
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: PMI04_02425
symbol: ctaG
gene_biotype: protein_coding
description:
  Cytochrome oxidase assembly factor; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.


ensembl_gene_id: PMI04_02430
symbol: EJK82525.1
gene_biotype: protein_coding
description:
  Putative SAM-dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase; Belongs to the methyltransferase superfamily.


ensembl_gene_id: PMI04_02433
symbol: EJK82528.1
gene_biotype: protein_coding
description:
  Folate-binding protein YgfZ; PFAM: Aminomethyltransferase folate-binding domain; TIGRFAM: folate-binding protein YgfZ; Belongs to the GcvT family.


ensembl_gene_id: PMI04_02445
symbol: crcB
gene_biotype: protein_coding
description:
  Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: PMI04_02446
symbol: EJK82541.1
gene_biotype: protein_coding
description:
  PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: PMI04_02447
symbol: EJK82542.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.


ensembl_gene_id: PMI04_02458
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: PMI04_02459
symbol: hisA
gene_biotype: protein_coding
description:
  PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.


ensembl_gene_id: PMI04_02460
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: PMI04_02465
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: PMI04_02470
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: PMI04_02474
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: PMI04_02477
symbol: EJK82572.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase N terminal, Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain.


ensembl_gene_id: PMI04_02480
symbol: EJK82575.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for Fe3+-dicitrate; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI04_02496
symbol: EJK82591.1
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: cystathionine beta-lyase, bacterial.


ensembl_gene_id: PMI04_02499
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: PMI04_02504
symbol: EJK82599.1
gene_biotype: protein_coding
description:
  PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor.


ensembl_gene_id: PMI04_02505
symbol: EJK82600.1
gene_biotype: protein_coding
description:
  PFAM: OPT oligopeptide transporter protein; TIGRFAM: putative oligopeptide transporter, OPT family, oligopeptide transporters, OPT superfamily.


ensembl_gene_id: PMI04_02512
symbol: EJK82606.1
gene_biotype: protein_coding
description:
  Histidine kinase,MASE1-containing protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, MASE1.


ensembl_gene_id: PMI04_02513
symbol: EJK82607.1
gene_biotype: protein_coding
description:
  Response regulator with putative antiterminator output domain; PFAM: Response regulator receiver domain, ANTAR domain.


ensembl_gene_id: PMI04_02515
symbol: EJK82609.1
gene_biotype: protein_coding
description:
  Nitrate/nitrite transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: nitrite extrusion protein (nitrite facilitator).


ensembl_gene_id: PMI04_02517
symbol: EJK82611.1
gene_biotype: protein_coding
description:
  NAD(P)H-dependent nitrite reductase, large subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase, BFD-like [2Fe-2S] binding domain, Nitrite and sulphite reductase 4Fe-4S domain, Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: nitrite reductase [NAD(P)H], large subunit.


ensembl_gene_id: PMI04_02519
symbol: EJK82613.1
gene_biotype: protein_coding
description:
  Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase, Molydopterin dinucleotide binding domain, BFD-like [2Fe-2S] binding domain, Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.


ensembl_gene_id: PMI04_02520
symbol: EJK82614.1
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: PMI04_02521
symbol: EJK82615.1
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis enzyme; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: PMI04_02527
symbol: EJK82621.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.


ensembl_gene_id: PMI04_02542
symbol: EJK82635.1
gene_biotype: protein_coding
description:
  PFAM: High-affinity nickel-transport protein; TIGRFAM: high-affinity nickel-transporter, HoxN/HupN/NixA family; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: PMI04_02546
symbol: EJK82639.1
gene_biotype: protein_coding
description:
  Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PMI04_02556
symbol: EJK82649.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: YcaO-like family; TIGRFAM: uncharacterized domain, bacteriocin biosynthesis docking scaffold, SagD family.


ensembl_gene_id: PMI04_02558
symbol: EJK82651.1
gene_biotype: protein_coding
description:
  DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain, Transcriptional regulatory protein, C terminal.


ensembl_gene_id: PMI04_02567
symbol: EJK82660.1
gene_biotype: protein_coding
description:
  Glucose/galactose transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter.


ensembl_gene_id: PMI04_02570
symbol: EJK82663.1
gene_biotype: protein_coding
description:
  PFAM: HAMP domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI04_02577
symbol: EJK82670.1
gene_biotype: protein_coding
description:
  Osmosensitive K+ channel histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, Osmosensitive K+ channel His kinase sensor domain, Universal stress protein family.


ensembl_gene_id: PMI04_02578
symbol: kdpC
gene_biotype: protein_coding
description:
  K+-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: PMI04_02579
symbol: kdpB
gene_biotype: protein_coding
description:
  K+-transporting ATPase, B subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: PMI04_02580
symbol: kdpA
gene_biotype: protein_coding
description:
  K+-transporting ATPase, KdpA; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: PMI04_02581
symbol: EJK82674.1
gene_biotype: protein_coding
description:
  PFAM: F subunit of K+-transporting ATPase (Potass_KdpF); TIGRFAM: K+-transporting ATPase, KdpF subunit.


ensembl_gene_id: PMI04_02591
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PMI04_02592
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PMI04_02595
symbol: EJK82688.1
gene_biotype: protein_coding
description:
  Cysteine synthase A; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A, cysteine synthases; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: PMI04_02599
symbol: EJK82692.1
gene_biotype: protein_coding
description:
  Periplasmic serine protease, Do/DeqQ family; PFAM: Trypsin, PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; Belongs to the peptidase S1C family.


ensembl_gene_id: PMI04_02602
symbol: EJK82695.1
gene_biotype: protein_coding
description:
  ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: PMI04_02604
symbol: EJK82697.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase.


ensembl_gene_id: PMI04_02605
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: PMI04_02610
symbol: EJK82703.1
gene_biotype: protein_coding
description:
  Threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.


ensembl_gene_id: PMI04_02611
symbol: EJK82704.1
gene_biotype: protein_coding
description:
  Membrane-associated lipoprotein involved in thiamine biosynthesis; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: PMI04_02612
symbol: EJK82705.1
gene_biotype: protein_coding
description:
  ABC-type Co2+ transport system, periplasmic component; PFAM: Nickel uptake substrate-specific transmembrane region.


ensembl_gene_id: PMI04_02620
symbol: EJK82712.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, DNA invertase Pin; PFAM: Resolvase, N terminal domain, Helix-turn-helix domain of resolvase.


ensembl_gene_id: PMI04_02623
symbol: EJK82715.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: benzoate transport.


ensembl_gene_id: PMI04_02625
symbol: EJK82717.1
gene_biotype: protein_coding
description:
  Muconate/chloromuconate cycloisomerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; TIGRFAM: muconate and chloromuconate cycloisomerases.


ensembl_gene_id: PMI04_02627
symbol: EJK82719.1
gene_biotype: protein_coding
description:
  Protocatechuate 3,4-dioxygenase beta subunit; PFAM: Dioxygenase, Catechol dioxygenase N terminus; TIGRFAM: catechol 1,2-dioxygenase, proteobacterial.


ensembl_gene_id: PMI04_02628
symbol: EJK82720.1
gene_biotype: protein_coding
description:
  Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Ring hydroxylating alpha subunit (catalytic domain), Rieske [2Fe-2S] domain; TIGRFAM: benzoate 1,2-dioxygenase, large subunit.


ensembl_gene_id: PMI04_02635
symbol: EJK82727.1
gene_biotype: protein_coding
description:
  PFAM: Thiolase, C-terminal domain, Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases, 3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PMI04_02638
symbol: EJK82730.1
gene_biotype: protein_coding
description:
  Choline dehydrogenase-like flavoprotein; PFAM: Pyridine nucleotide-disulphide oxidoreductase, GMC oxidoreductase.


ensembl_gene_id: PMI04_02644
symbol: EJK82736.1
gene_biotype: protein_coding
description:
  PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.


ensembl_gene_id: PMI04_02652
symbol: EJK82744.1
gene_biotype: protein_coding
description:
  Nickel uptake transporter family protein; PFAM: Nickel uptake substrate-specific transmembrane region.


ensembl_gene_id: PMI04_02656
symbol: EJK82748.1
gene_biotype: protein_coding
description:
  Glycosidase; PFAM: Alpha amylase, catalytic domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_02664
symbol: EJK82756.1
gene_biotype: protein_coding
description:
  Xaa-Pro aminopeptidase; PFAM: Metallopeptidase family M24, Creatinase/Prolidase N-terminal domain; Belongs to the peptidase M24B family.


ensembl_gene_id: PMI04_02666
symbol: EJK82758.1
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase; Belongs to the DapA family.


ensembl_gene_id: PMI04_02674
symbol: EJK82288.1
gene_biotype: protein_coding
description:
  Fumarylacetoacetase; PFAM: Domain of unknown function (DUF1969), Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: fumarylacetoacetase.


ensembl_gene_id: PMI04_02675
symbol: hmgA
gene_biotype: protein_coding
description:
  Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.


ensembl_gene_id: PMI04_02676
symbol: EJK82290.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase.


ensembl_gene_id: PMI04_02678
symbol: EJK82292.1
gene_biotype: protein_coding
description:
  Phenylalanine-4-hydroxylase, monomeric form; PFAM: Biopterin-dependent aromatic amino acid hydroxylase; TIGRFAM: phenylalanine-4-hydroxylase, monomeric form.


ensembl_gene_id: PMI04_02681
symbol: EJK82295.1
gene_biotype: protein_coding
description:
  PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: PMI04_02683
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: PMI04_02685
symbol: EJK82299.1
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.


ensembl_gene_id: PMI04_02694
symbol: ku
gene_biotype: protein_coding
description:
  Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: PMI04_02696
symbol: EJK82310.1
gene_biotype: protein_coding
description:
  PFAM: ATP dependent DNA ligase domain, Eukaryotic and archaeal DNA primase small subunit, ATP dependent DNA ligase C terminal region; TIGRFAM: DNA polymerase LigD, ligase domain, DNA ligase D, DNA ligase D, 3'-phosphoesterase domain, DNA polymerase LigD, polymerase domain.


ensembl_gene_id: PMI04_02701
symbol: EJK82315.1
gene_biotype: protein_coding
description:
  Heme/copper-type cytochrome/quinol oxidase, subunit 1; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: PMI04_02702
symbol: EJK82316.1
gene_biotype: protein_coding
description:
  Heme/copper-type cytochrome/quinol oxidase, subunit 2; PFAM: Cytochrome C oxidase subunit II, periplasmic domain, Cytochrome c.


ensembl_gene_id: PMI04_02728
symbol: EJK82342.1
gene_biotype: protein_coding
description:
  Putative protein containing double-stranded beta helix domain-containing protein; PFAM: Cupin domain.


ensembl_gene_id: PMI04_02737
symbol: EJK82351.1
gene_biotype: protein_coding
description:
  PFAM: TrwC relaxase, Viral (Superfamily 1) RNA helicase; TIGRFAM: conjugative relaxase domain, TrwC/TraI family.


ensembl_gene_id: PMI04_02738
symbol: EJK82352.1
gene_biotype: protein_coding
description:
  Type IV secretory pathway, VirD4 component; PFAM: Type IV secretion-system coupling protein DNA-binding domain.


ensembl_gene_id: PMI04_02758
symbol: EJK82372.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; PFAM: Phage integrase family; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_02760
symbol: EJK82374.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain, Phage integrase family; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.


ensembl_gene_id: PMI04_02769
symbol: EJK82383.1
gene_biotype: protein_coding
description:
  Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL family, PIF1 helicase, Viral (Superfamily 1) RNA helicase; TIGRFAM: Ti-type conjugative transfer relaxase TraA.


ensembl_gene_id: PMI04_02772
symbol: EJK82386.1
gene_biotype: protein_coding
description:
  Putative protein, YfiH family; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: PMI04_02777
symbol: EJK81686.1
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: PMI04_02779
symbol: clpS
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: PMI04_02781
symbol: EJK81690.1
gene_biotype: protein_coding
description:
  poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus, alpha/beta hydrolase fold; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I.


ensembl_gene_id: PMI04_02784
symbol: EJK81693.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain, [2Fe-2S] binding domain.


ensembl_gene_id: PMI04_02790
symbol: lysS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (K); TIGRFAM: lysyl-tRNA synthetase, archaeal and spirochete; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI04_02796
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: PMI04_02797
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: PMI04_02798
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: PMI04_02799
symbol: rpmF
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: PMI04_02813
symbol: EJK81722.1
gene_biotype: protein_coding
description:
  Ribonucleotide reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: PMI04_02814
symbol: EJK81723.1
gene_biotype: protein_coding
description:
  Ribonucleotide reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: PMI04_02816
symbol: EJK81725.1
gene_biotype: protein_coding
description:
  Hydrolyase, Fe-S type, tartrate/fumarate subfamily; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: PMI04_02831
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: PMI04_02846
symbol: EJK81755.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain, GGDEF domain, PilZ domain; TIGRFAM: PAS domain S-box, diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI04_02847
symbol: EJK81756.1
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: PMI04_02849
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: PMI04_02852
symbol: EJK81761.1
gene_biotype: protein_coding
description:
  Thiosulfate reductase cytochrome B subunit (membrane anchoring protein); PFAM: Cytochrome b(N-terminal)/b6/petB.


ensembl_gene_id: PMI04_02861
symbol: recF
gene_biotype: protein_coding
description:
  recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: PMI04_02873
symbol: EJK81782.1
gene_biotype: protein_coding
description:
  Outer membrane phospholipase A; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.


ensembl_gene_id: PMI04_02874
symbol: cas9
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans- encoded small RNA (tracrRNA), endogenous ribonuclease 3  [...]


ensembl_gene_id: PMI04_02875
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: PMI04_02876
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: PMI04_02881
symbol: EJK81633.1
gene_biotype: protein_coding
description:
  PFAM: Na+ dependent nucleoside transporter C-terminus, Na+ dependent nucleoside transporter N-terminus, Nucleoside recognition; TIGRFAM: nucleoside transporter.


ensembl_gene_id: PMI04_02883
symbol: EJK81635.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.


ensembl_gene_id: PMI04_02884
symbol: EJK81636.1
gene_biotype: protein_coding
description:
  Putative methyltransferase; PFAM: Uncharacterized conserved protein (DUF2260); TIGRFAM: probable methyltransferase.


ensembl_gene_id: PMI04_02885
symbol: EJK81637.1
gene_biotype: protein_coding
description:
  TIGR03440 family protein; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: TIGR03440 family protein.


ensembl_gene_id: PMI04_02887
symbol: EJK81639.1
gene_biotype: protein_coding
description:
  PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: PMI04_02889
symbol: EJK81641.1
gene_biotype: protein_coding
description:
  Glutamyl- or glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI04_02892
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: PMI04_02896
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: PMI04_02901
symbol: EJK81653.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.


ensembl_gene_id: PMI04_02902
symbol: rpmJ
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: PMI04_02907
symbol: EJK81659.1
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase.


ensembl_gene_id: PMI04_02909
symbol: EJK81661.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit.


ensembl_gene_id: PMI04_02910
symbol: EJK81662.1
gene_biotype: protein_coding
description:
  PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein.


ensembl_gene_id: PMI04_02911
symbol: EJK81663.1
gene_biotype: protein_coding
description:
  PFAM: domain, FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup, succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: PMI04_02913
symbol: EJK81665.1
gene_biotype: protein_coding
description:
  Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase; PFAM: Rieske [2Fe-2S] domain.


ensembl_gene_id: PMI04_02919
symbol: EJK81671.1
gene_biotype: protein_coding
description:
  Putative acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_02921
symbol: EJK81673.1
gene_biotype: protein_coding
description:
  N-methylhydantoinase A/acetone carboxylase, beta subunit; PFAM: Hydantoinase/oxoprolinase, Hydantoinase/oxoprolinase N-terminal region.


ensembl_gene_id: PMI04_02924
symbol: EJK81676.1
gene_biotype: protein_coding
description:
  Amidohydrolase, imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: YD repeat (two copies).


ensembl_gene_id: PMI04_02931
symbol: EJK81683.1
gene_biotype: protein_coding
description:
  Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.


ensembl_gene_id: PMI04_02938
symbol: EJK81436.1
gene_biotype: protein_coding
description:
  Fused histidine kinase/response regulator receiver domain-containing protein; PFAM: Response regulator receiver domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI04_02940
symbol: EJK81438.1
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase; PFAM: Protein of unknown function (DUF938).


ensembl_gene_id: PMI04_02942
symbol: EJK81440.1
gene_biotype: protein_coding
description:
  Glycine cleavage system protein P; PFAM: Aminotransferase class-V; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_02943
symbol: gcvPA
gene_biotype: protein_coding
description:
  Glycine cleavage system protein P; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.


ensembl_gene_id: PMI04_02944
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: PMI04_02945
symbol: EJK81443.1
gene_biotype: protein_coding
description:
  PFAM: Glycine cleavage T-protein C-terminal barrel domain, Aminomethyltransferase folate-binding domain; TIGRFAM: glycine cleavage system T protein.


ensembl_gene_id: PMI04_02950
symbol: EJK81446.1
gene_biotype: protein_coding
description:
  PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: PMI04_02952
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: PMI04_02953
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: PMI04_02954
symbol: ftsQ
gene_biotype: protein_coding
description:
  Cell division septal protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.


ensembl_gene_id: PMI04_02955
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: PMI04_02959
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: PMI04_02961
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: PMI04_02962
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: PMI04_02963
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: PMI04_02964
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: PMI04_02965
symbol: EJK81461.1
gene_biotype: protein_coding
description:
  Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain, Penicillin-binding Protein dimerization domain.


ensembl_gene_id: PMI04_02967
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: PMI04_02974
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine targeting protein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: PMI04_02975
symbol: EJK81471.1
gene_biotype: protein_coding
description:
  Sec-independent protein secretion pathway component; TIGRFAM: twin arginine-targeting protein translocase TatB.


ensembl_gene_id: PMI04_02976
symbol: tatA
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: PMI04_02977
symbol: EJK81473.1
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: PMI04_02978
symbol: EJK81474.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: PMI04_02981
symbol: argS
gene_biotype: protein_coding
description:
  arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain, Arginyl tRNA synthetase N terminal domain, tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.


ensembl_gene_id: PMI04_02983
symbol: ispH
gene_biotype: protein_coding
description:
  (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: PMI04_02984
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase, Neisseria type; PFAM: Phosphotransferase enzyme family; TIGRFAM: homoserine kinase, Neisseria type; Belongs to the pseudomonas-type ThrB family.


ensembl_gene_id: PMI04_02990
symbol: EJK81486.1
gene_biotype: protein_coding
description:
  Flp pilus assembly protein, protease CpaA; PFAM: Type IV leader peptidase family; Belongs to the peptidase A24 family.


ensembl_gene_id: PMI04_02992
symbol: EJK81488.1
gene_biotype: protein_coding
description:
  Flp pilus assembly protein, secretin CpaC; PFAM: Putative phospholipid-binding domain, Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.


ensembl_gene_id: PMI04_02993
symbol: EJK81489.1
gene_biotype: protein_coding
description:
  Type IV pili component; PFAM: Pilus biogenesis CpaD protein (pilus_cpaD); TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD.


ensembl_gene_id: PMI04_03000
symbol: folD
gene_biotype: protein_coding
description:
  5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: PMI04_03001
symbol: EJK81497.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized ACR, YggU family COG1872; Belongs to the UPF0235 family.


ensembl_gene_id: PMI04_03004
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: PMI04_03007
symbol: EJK81503.1
gene_biotype: protein_coding
description:
  NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: PMI04_03009
symbol: EJK81505.1
gene_biotype: protein_coding
description:
  NAD/NADP transhydrogenase alpha subunit; PFAM: Alanine dehydrogenase/PNT, C-terminal domain, Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: NAD(P) transhydrogenase, alpha subunit.


ensembl_gene_id: PMI04_03015
symbol: EJK81511.1
gene_biotype: protein_coding
description:
  tRNA/rRNA cytosine-C5-methylase; PFAM: NOL1/NOP2/sun family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: PMI04_03016
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5''-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: PMI04_03017
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: PMI04_03019
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: PMI04_03022
symbol: EJK81518.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; PFAM: GAF domain, PEP-utilising enzyme, mobile domain, PEP-utilising enzyme, TIM barrel domain, PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PMI04_03023
symbol: EJK81519.1
gene_biotype: protein_coding
description:
  PLP-dependent enzyme, histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase.


ensembl_gene_id: PMI04_03024
symbol: EJK81520.1
gene_biotype: protein_coding
description:
  PLP-dependent enzyme, histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase; PFAM: Aminotransferase class I and II.


ensembl_gene_id: PMI04_03032
symbol: hisC
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: PMI04_03035
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: PMI04_03042
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: PMI04_03046
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain, Ferredoxin-fold anticodon binding domain, B3/4 domain, Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: PMI04_03047
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F), Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: PMI04_03049
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: PMI04_03050
symbol: rpmI
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: PMI04_03054
symbol: EJK81222.1
gene_biotype: protein_coding
description:
  PFAM: Inositol monophosphatase family; TIGRFAM: histidinol-phosphate phosphatase HisN, inositol monophosphatase family.


ensembl_gene_id: PMI04_03057
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: PMI04_03058
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: PMI04_03062
symbol: EJK81230.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.


ensembl_gene_id: PMI04_03063
symbol: EJK81231.1
gene_biotype: protein_coding
description:
  2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: PMI04_03075
symbol: EJK81243.1
gene_biotype: protein_coding
description:
  P-type DNA transfer ATPase VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.


ensembl_gene_id: PMI04_03087
symbol: EJK81131.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain-containing protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: PMI04_03094
symbol: EJK81138.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI04_03103
symbol: EJK81147.1
gene_biotype: protein_coding
description:
  PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric.


ensembl_gene_id: PMI04_03106
symbol: EJK81150.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: PMI04_03108
symbol: EJK81152.1
gene_biotype: protein_coding
description:
  Putative hydrolase, CocE/NonD family; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain, X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family.


ensembl_gene_id: PMI04_03110
symbol: EJK81154.1
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase; PFAM: Predicted methyltransferase regulatory domain.


ensembl_gene_id: PMI04_03111
symbol: EJK81155.1
gene_biotype: protein_coding
description:
  Thioredoxin-dependent phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: PMI04_03113
symbol: EJK81157.1
gene_biotype: protein_coding
description:
  Sulfite reductase, beta subunit (hemoprotein); PFAM: Nitrite and sulphite reductase 4Fe-4S domain, Nitrite/Sulfite reductase ferredoxin-like half domain.


ensembl_gene_id: PMI04_03115
symbol: EJK81159.1
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase.


ensembl_gene_id: PMI04_03126
symbol: EJK81170.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.


ensembl_gene_id: PMI04_03130
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: PMI04_03140
symbol: EJK81183.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain, Secretin and TonB N terminus short domain.


ensembl_gene_id: PMI04_03146
symbol: nadK
gene_biotype: protein_coding
description:
  Putative sugar kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: PMI04_03147
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: PMI04_03155
symbol: EJK81197.1
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor Mfd; PFAM: Helicase conserved C-terminal domain, TRCF domain, CarD-like/TRCF domain, DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd).


ensembl_gene_id: PMI04_03166
symbol: EJK80944.1
gene_biotype: protein_coding
description:
  Putative hydrolase or acyltransferase of alpha/beta superfamily; PFAM: Epoxide hydrolase N terminus.


ensembl_gene_id: PMI04_03176
symbol: EJK80954.1
gene_biotype: protein_coding
description:
  Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI04_03180
symbol: EJK80958.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: MerR, DNA binding, MerR family regulatory protein; TIGRFAM: Cu(I)-responsive transcriptional regulator.


ensembl_gene_id: PMI04_03181
symbol: EJK80959.1
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme; PFAM: Bacterial alpha-L-rhamnosidase, Alpha-L-rhamnosidase N-terminal domain.


ensembl_gene_id: PMI04_03198
symbol: ectA
gene_biotype: protein_coding
description:
  Diaminobutyrate acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A.


ensembl_gene_id: PMI04_03199
symbol: EJK80977.1
gene_biotype: protein_coding
description:
  Diaminobutyrate--2-oxoglutarate aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PMI04_03200
symbol: ectC
gene_biotype: protein_coding
description:
  Ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant.


ensembl_gene_id: PMI04_03203
symbol: EJK80981.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_03212
symbol: EJK80990.1
gene_biotype: protein_coding
description:
  Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain, Secretin and TonB N terminus short domain.


ensembl_gene_id: PMI04_03216
symbol: EJK80994.1
gene_biotype: protein_coding
description:
  Amidohydrolase, imidazolonepropionase; PFAM: Complex I intermediate-associated protein 30 (CIA30), Amidohydrolase family.


ensembl_gene_id: PMI04_03228
symbol: EJK81006.1
gene_biotype: protein_coding
description:
  L-fucose:H+ symporter permease; PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease.


ensembl_gene_id: PMI04_03232
symbol: EJK81010.1
gene_biotype: protein_coding
description:
  PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_03252
symbol: EJK81030.1
gene_biotype: protein_coding
description:
  ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease.


ensembl_gene_id: PMI04_03258
symbol: EJK81036.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF385); TIGRFAM: deazaflavin-dependent nitroreductase family protein.


ensembl_gene_id: PMI04_03278
symbol: EJK80741.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_03279
symbol: EJK80742.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, N-terminal domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_03284
symbol: EJK80747.1
gene_biotype: protein_coding
description:
  Putative nucleic-acid-binding protein containing a Zn-ribbon; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N), DUF35 OB-fold domain.


ensembl_gene_id: PMI04_03300
symbol: EJK80763.1
gene_biotype: protein_coding
description:
  Putative quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: putative quinone oxidoreductase, YhdH/YhfP family.


ensembl_gene_id: PMI04_03318
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit, proteobacterial; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: PMI04_03322
symbol: metZ
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase/cystathionine gamma-synthase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: PMI04_03325
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: PMI04_03328
symbol: EJK80686.1
gene_biotype: protein_coding
description:
  PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain, Citrate lyase, alpha subunit (CitF); TIGRFAM: succinate CoA transferases.


ensembl_gene_id: PMI04_03332
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: PMI04_03335
symbol: atpF
gene_biotype: protein_coding
description:
  F0F1-type ATP synthase, beta subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: PMI04_03337
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: PMI04_03338
symbol: atpB
gene_biotype: protein_coding
description:
  F0F1-type ATP synthase, alpha subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: PMI04_03339
symbol: EJK80697.1
gene_biotype: protein_coding
description:
  Hypothetical protein; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.


ensembl_gene_id: PMI04_03343
symbol: EJK80701.1
gene_biotype: protein_coding
description:
  DNA repair protein radc; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family.


ensembl_gene_id: PMI04_03344
symbol: EJK80702.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: PMI04_03355
symbol: EJK80712.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase; PFAM: Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Belongs to the TPP enzyme family.


ensembl_gene_id: PMI04_03374
symbol: trmFO
gene_biotype: protein_coding
description:
  tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: PMI04_03380
symbol: EJK80737.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.


ensembl_gene_id: PMI04_03393
symbol: EJK80496.1
gene_biotype: protein_coding
description:
  rRNA methylase, putative, group 3; PFAM: SpoU rRNA Methylase family, RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: PMI04_03396
symbol: EJK80498.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl hydrolase family 3 C terminal domain, Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: PMI04_03397
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: PMI04_03408
symbol: EJK80510.1
gene_biotype: protein_coding
description:
  PFAM: chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade.


ensembl_gene_id: PMI04_03409
symbol: EJK80511.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PFAM: Aminotransferase class IV.


ensembl_gene_id: PMI04_03412
symbol: msrA
gene_biotype: protein_coding
description:
  methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: PMI04_03414
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: PMI04_03415
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: PMI04_03420
symbol: EJK80522.1
gene_biotype: protein_coding
description:
  Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: MoeZ/MoeB domain, ThiF family.


ensembl_gene_id: PMI04_03422
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: PMI04_03423
symbol: EJK80525.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: PMI04_03426
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: PMI04_03428
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase Fpg; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: PMI04_03430
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: PMI04_03436
symbol: secB
gene_biotype: protein_coding
description:
  Protein-export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: PMI04_03437
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: PMI04_03438
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI04_03441
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: PMI04_03445
symbol: aat
gene_biotype: protein_coding
description:
  leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: PMI04_03446
symbol: EJK80548.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase 17.2 kD subunit; PFAM: NADH ubiquinone oxidoreductase subunit NDUFA12.


ensembl_gene_id: PMI04_03453
symbol: EJK80555.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: PMI04_03454
symbol: EJK80556.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: PMI04_03455
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: PMI04_03456
symbol: thiG
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiS; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: PMI04_03459
symbol: EJK80561.1
gene_biotype: protein_coding
description:
  PFAM: HAD superfamily, subfamily IIIB (Acid phosphatase); TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family.


ensembl_gene_id: PMI04_03466
symbol: EJK80568.1
gene_biotype: protein_coding
description:
  PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.


ensembl_gene_id: PMI04_03480
symbol: EJK80347.1
gene_biotype: protein_coding
description:
  MAF protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: PMI04_03481
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: PMI04_03482
symbol: EJK80349.1
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PMI04_03488
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: PMI04_03489
symbol: EJK80356.1
gene_biotype: protein_coding
description:
  7-keto-8-aminopelargonate synthetase-like enzyme; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase.


ensembl_gene_id: PMI04_03493
symbol: hppA
gene_biotype: protein_coding
description:
  Vacuolar-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: PMI04_03495
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: PMI04_03496
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: PMI04_03497
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: PMI04_03498
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: PMI04_03499
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: PMI04_03504
symbol: EJK80371.1
gene_biotype: protein_coding
description:
  Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PMI04_03507
symbol: EJK80374.1
gene_biotype: protein_coding
description:
  TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: PMI04_03509
symbol: EJK80376.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: PMI04_03511
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: PMI04_03512
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: PMI04_03517
symbol: EJK80384.1
gene_biotype: protein_coding
description:
  PFAM: Ferrous iron transport protein B, Ferrous iron transport protein B C terminus, Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB.


ensembl_gene_id: PMI04_03519
symbol: EJK80386.1
gene_biotype: protein_coding
description:
  PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus, Pyrrolo-quinoline quinone coenzyme C-terminus, PQQ enzyme repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family.


ensembl_gene_id: PMI04_03521
symbol: EJK80388.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein; PFAM: FAD binding domain in molybdopterin dehydrogenase, CO dehydrogenase flavoprotein C-terminal domain.


ensembl_gene_id: PMI04_03523
symbol: EJK80390.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain.


ensembl_gene_id: PMI04_03526
symbol: EJK80393.1
gene_biotype: protein_coding
description:
  UDP-glucose pyrophosphorylase; PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase.


ensembl_gene_id: PMI04_03529
symbol: htpX
gene_biotype: protein_coding
description:
  Zn-dependent protease with chaperone function; PFAM: Peptidase family M48; Belongs to the peptidase M48B family.


ensembl_gene_id: PMI04_03531
symbol: EJK80398.1
gene_biotype: protein_coding
description:
  tRNA/rRNA cytosine-C5-methylase; PFAM: NOL1/NOP2/sun family, NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: PMI04_03533
symbol: EJK80400.1
gene_biotype: protein_coding
description:
  PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: PMI04_03536
symbol: purH
gene_biotype: protein_coding
description:
  PFAM: AICARFT/IMPCHase bienzyme, MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase.


ensembl_gene_id: PMI04_03544
symbol: queG
gene_biotype: protein_coding
description:
  Iron-sulfur cluster binding protein, putative; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: PMI04_03549
symbol: gpsA
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: PMI04_03550
symbol: tsaD
gene_biotype: protein_coding
description:
  Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: PMI04_03551
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.


ensembl_gene_id: PMI04_03555
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: PMI04_03556
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: PMI04_03559
symbol: EJK80213.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: PMI04_03560
symbol: EJK80214.1
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase, F subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit.


ensembl_gene_id: PMI04_03568
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: PMI04_03569
symbol: EJK80223.1
gene_biotype: protein_coding
description:
  Amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein.


ensembl_gene_id: PMI04_03573
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: PMI04_03575
symbol: ctaA
gene_biotype: protein_coding
description:
  Putative protein required for cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.


ensembl_gene_id: PMI04_03576
symbol: EJK80230.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Response regulator receiver domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI04_03579
symbol: EJK80233.1
gene_biotype: protein_coding
description:
  Dihydroxyacid dehydratase/phosphogluconate dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: PMI04_03587
symbol: EJK80241.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein.


ensembl_gene_id: PMI04_03594
symbol: grpE
gene_biotype: protein_coding
description:
  Molecular chaperone GrpE (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle.  [...]


ensembl_gene_id: PMI04_03595
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat shock gene repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: PMI04_03600
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: PMI04_03601
symbol: EJK80255.1
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: PMI04_03605
symbol: EJK80259.1
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: PMI04_03609
symbol: EJK80263.1
gene_biotype: protein_coding
description:
  PFAM: Glutaredoxin; TIGRFAM: monothiol glutaredoxin, Grx4 family; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: PMI04_03612
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: PMI04_03614
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: PMI04_03620
symbol: EJK80274.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Sugar (and other) transporter, Major Facilitator Superfamily.


ensembl_gene_id: PMI04_03624
symbol: EJK80278.1
gene_biotype: protein_coding
description:
  5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Pterin binding enzyme, Vitamin B12 dependent methionine synthase, activation domain, B12 binding domain; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase.


ensembl_gene_id: PMI04_03626
symbol: EJK80280.1
gene_biotype: protein_coding
description:
  PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: PMI04_03632
symbol: rpmB
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: PMI04_03634
symbol: tadA
gene_biotype: protein_coding
description:
  Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: PMI04_03637
symbol: EJK80291.1
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase, RelA/SpoT family; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: PMI04_03644
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: PMI04_03650
symbol: EJK79984.1
gene_biotype: protein_coding
description:
  PFAM: Phage capsid family, Caudovirus prohead protease; TIGRFAM: phage major capsid protein, HK97 family.


ensembl_gene_id: PMI04_03702
symbol: EJK79820.1
gene_biotype: protein_coding
description:
  General secretion pathway protein D; PFAM: Bacterial type II/III secretion system short domain, Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D.


ensembl_gene_id: PMI04_03703
symbol: EJK79821.1
gene_biotype: protein_coding
description:
  General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.


ensembl_gene_id: PMI04_03704
symbol: EJK79822.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F.


ensembl_gene_id: PMI04_03705
symbol: EJK79823.1
gene_biotype: protein_coding
description:
  General secretion pathway protein G; PFAM: Prokaryotic N-terminal methylation motif, Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G, prepilin-type N-terminal cleavage/methylation domain.


ensembl_gene_id: PMI04_03706
symbol: EJK79824.1
gene_biotype: protein_coding
description:
  General secretion pathway protein H; PFAM: Prokaryotic N-terminal methylation motif, Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain, general secretion pathway protein H.


ensembl_gene_id: PMI04_03707
symbol: EJK79825.1
gene_biotype: protein_coding
description:
  General secretion pathway protein I; PFAM: Prokaryotic N-terminal methylation motif, Bacterial type II secretion system protein I/J; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain, general secretion pathway protein I.


ensembl_gene_id: PMI04_03708
symbol: EJK79826.1
gene_biotype: protein_coding
description:
  General secretion pathway protein J; PFAM: Prokaryotic N-terminal methylation motif, Pseudopilin GspJ; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain, general secretion pathway protein J.


ensembl_gene_id: PMI04_03710
symbol: EJK79828.1
gene_biotype: protein_coding
description:
  Type II secretory pathway, component PulL; PFAM: General secretion pathway protein L (GspL); TIGRFAM: general secretion pathway protein L.


ensembl_gene_id: PMI04_03711
symbol: EJK79829.1
gene_biotype: protein_coding
description:
  Type II secretory pathway, component PulM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.


ensembl_gene_id: PMI04_03713
symbol: EJK79831.1
gene_biotype: protein_coding
description:
  Prepilin signal peptidase PulO-like peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.


ensembl_gene_id: PMI04_03715
symbol: EJK79805.1
gene_biotype: protein_coding
description:
  Maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain; TIGRFAM: maleylacetoacetate isomerase.


ensembl_gene_id: PMI04_03718
symbol: EJK79807.1
gene_biotype: protein_coding
description:
  PFAM: Cobalamin synthesis protein cobW C-terminal domain, CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: cobalamin biosynthesis protein CobW.


ensembl_gene_id: PMI04_03720
symbol: EJK79809.1
gene_biotype: protein_coding
description:
  cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.


ensembl_gene_id: PMI04_03724
symbol: EJK79812.1
gene_biotype: protein_coding
description:
  Outer membrane cobalamin receptor protein; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor; TIGRFAM: TonB-dependent vitamin B12 receptor.


ensembl_gene_id: PMI04_03726
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: PMI04_03728
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: PMI04_03732
symbol: EJK79554.1
gene_biotype: protein_coding
description:
  PFAM: Alanine dehydrogenase/PNT, C-terminal domain, Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; Belongs to the AlaDH/PNT family.


ensembl_gene_id: PMI04_03736
symbol: EJK79557.1
gene_biotype: protein_coding
description:
  Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus, Pyrrolo-quinoline quinone coenzyme C-terminus, PQQ enzyme repeat; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family.


ensembl_gene_id: PMI04_03748
symbol: EJK79569.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome D1 heme domain; TIGRFAM: PQQ-dependent catabolism-associated beta-propeller protein, 40-residue YVTN family beta-propeller repeat.


ensembl_gene_id: PMI04_03750
symbol: EJK79571.1
gene_biotype: protein_coding
description:
  Periplasmic component of amino acid ABC-type transporter/signal transduction system; PFAM: Bacterial extracellular solute-binding proteins, family 3.


ensembl_gene_id: PMI04_03753
symbol: EJK79574.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI04_03770
symbol: dnaE2
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase III PolC; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: PMI04_03771
symbol: EJK79545.1
gene_biotype: protein_coding
description:
  nucleotidyltransferase/DNA polymerase involved in DNA repair; PFAM: impB/mucB/samB family C-terminal.


ensembl_gene_id: PMI04_03775
symbol: recA
gene_biotype: protein_coding
description:
  Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: PMI04_03777
symbol: EJK79551.1
gene_biotype: protein_coding
description:
  Fused histidine kinase/response regulator receiver domain-containing protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI04_03784
symbol: EJK79527.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Domain of unknown function (DUF1974), Acyl-CoA dehydrogenase, N-terminal domain.


ensembl_gene_id: PMI04_03786
symbol: EJK79528.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein, lysR family.


ensembl_gene_id: PMI04_03788
symbol: EJK79530.1
gene_biotype: protein_coding
description:
  Phosphate transport regulator related to PhoU; PFAM: Protein of unknown function DUF47, NUDIX domain; TIGRFAM: TIGR00153 family protein.


ensembl_gene_id: PMI04_03809
symbol: EJK79384.1
gene_biotype: protein_coding
description:
  TIGR00730 family protein; PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein, TIGR00730 family protein; Belongs to the LOG family.


ensembl_gene_id: PMI04_03864
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: PMI04_03865
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: PMI04_03871
symbol: EJK79328.1
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain, Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.


ensembl_gene_id: PMI04_03875
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: PMI04_03882
symbol: gshB
gene_biotype: protein_coding
description:
  PFAM: Prokaryotic glutathione synthetase, N-terminal domain, Prokaryotic glutathione synthetase, ATP-grasp domain; TIGRFAM: glutathione synthetase, prokaryotic; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: PMI04_03883
symbol: EJK79340.1
gene_biotype: protein_coding
description:
  Putative endonuclease related to Holliday junction resolvase; PFAM: Uncharacterized protein family UPF0102; Belongs to the UPF0102 family.


ensembl_gene_id: PMI04_03884
symbol: rsmI
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: PMI04_03885
symbol: EJK79342.1
gene_biotype: protein_coding
description:
  ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: LppC putative lipoprotein.


ensembl_gene_id: PMI04_03887
symbol: EJK79344.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: PMI04_03892
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: PMI04_03893
symbol: EJK79349.1
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme; PFAM: Radical SAM superfamily, Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme, radical SAM methylthiotransferase, MiaB/RimO family.


ensembl_gene_id: PMI04_03894
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: PMI04_03895
symbol: EJK79351.1
gene_biotype: protein_coding
description:
  Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: PMI04_03897
symbol: EJK79353.1
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: PMI04_03907
symbol: EJK79362.1
gene_biotype: protein_coding
description:
  Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: PMI04_03910
symbol: EJK79365.1
gene_biotype: protein_coding
description:
  Chemotaxis protein histidine kinase-like protein; PFAM: CheW-like domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Signal transducing histidine kinase, homodimeric domain, Hpt domain.


ensembl_gene_id: PMI04_03912
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: PMI04_03914
symbol: EJK79369.1
gene_biotype: protein_coding
description:
  Beta-propeller domain-containing protein, methanol dehydrogenase; PFAM: Domain of unknown function (DUF477); overlaps another CDS with the same product name.


ensembl_gene_id: PMI04_03923
symbol: EJK79378.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein.


ensembl_gene_id: PMI04_03925
symbol: EJK79380.1
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PMI04_03926
symbol: EJK79381.1
gene_biotype: protein_coding
description:
  ABC-type molybdate transport system, ATPase component; PFAM: ABC transporter; TIGRFAM: molybdenum ABC transporter, ATP-binding protein.


ensembl_gene_id: PMI04_03932
symbol: EJK79106.1
gene_biotype: protein_coding
description:
  Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: PMI04_03933
symbol: EJK79107.1
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein FlgK; PFAM: Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PMI04_03935
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: PMI04_03936
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: PMI04_03937
symbol: EJK79111.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgG; PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgB, fagellar hook-basal body proteins, flagellar basal-body rod protein FlgG, Gram-negative bacteria.


ensembl_gene_id: PMI04_03938
symbol: EJK79112.1
gene_biotype: protein_coding
description:
  PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgF, fagellar hook-basal body proteins.


ensembl_gene_id: PMI04_03939
symbol: EJK79113.1
gene_biotype: protein_coding
description:
  PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins.


ensembl_gene_id: PMI04_03940
symbol: EJK79114.1
gene_biotype: protein_coding
description:
  Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: PMI04_03941
symbol: EJK79115.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgC; PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PMI04_03942
symbol: EJK79116.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: PMI04_03949
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: PMI04_03950
symbol: EJK79124.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4, Sigma-70 region 3, Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family, RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: PMI04_03952
symbol: EJK79126.1
gene_biotype: protein_coding
description:
  Periplasmic glucans biosynthesis protein; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: PMI04_03955
symbol: fliE
gene_biotype: protein_coding
description:
  PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE.


ensembl_gene_id: PMI04_03956
symbol: EJK79130.1
gene_biotype: protein_coding
description:
  Flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: PMI04_03957
symbol: EJK79131.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: PMI04_03959
symbol: EJK79133.1
gene_biotype: protein_coding
description:
  ATPase FliI/YscN family; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family.


ensembl_gene_id: PMI04_03962
symbol: EJK79136.1
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: PMI04_03963
symbol: EJK79137.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein; PFAM: Surface presentation of antigens (SPOA), Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.


ensembl_gene_id: PMI04_03964
symbol: EJK79138.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.


ensembl_gene_id: PMI04_03966
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: PMI04_03967
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: PMI04_03968
symbol: EJK79142.1
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: PMI04_03972
symbol: EJK79146.1
gene_biotype: protein_coding
description:
  Flagellin-specific chaperone FliS; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.


ensembl_gene_id: PMI04_03973
symbol: argD
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine transaminases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: PMI04_03974
symbol: EJK79148.1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: PMI04_03975
symbol: EJK79149.1
gene_biotype: protein_coding
description:
  Disulfide bond chaperone; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.


ensembl_gene_id: PMI04_03977
symbol: queC
gene_biotype: protein_coding
description:
  Queuosine biosynthesis protein QueC; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: PMI04_03978
symbol: queE
gene_biotype: protein_coding
description:
  Organic radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: PMI04_03981
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: PMI04_03985
symbol: trmL
gene_biotype: protein_coding
description:
  Putative rRNA methylase SpoU family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: PMI04_03986
symbol: EJK79160.1
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: PMI04_03987
symbol: EJK79161.1
gene_biotype: protein_coding
description:
  Cytochrome b subunit of the bc complex; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: PMI04_03989
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: PMI04_03991
symbol: EJK79165.1
gene_biotype: protein_coding
description:
  PFAM: Phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative.


ensembl_gene_id: PMI04_03993
symbol: dctA
gene_biotype: protein_coding
description:
  Na+/H+ dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: PMI04_04002
symbol: cysS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (C) catalytic domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI04_04003
symbol: EJK79176.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: MerR family regulatory protein, MerR, DNA binding, TipAS antibiotic-recognition domain.


ensembl_gene_id: PMI04_04004
symbol: EJK79177.1
gene_biotype: protein_coding
description:
  FtsH-interacting integral membrane protein; PFAM: Uncharacterized protein family UPF0005; Belongs to the BI1 family.


ensembl_gene_id: PMI04_04007
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: PMI04_04013
symbol: EJK79186.1
gene_biotype: protein_coding
description:
  PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.


ensembl_gene_id: PMI04_04017
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: PMI04_04018
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein, N-terminal domain, AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase.


ensembl_gene_id: PMI04_04021
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase 1; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: PMI04_04023
symbol: EJK79196.1
gene_biotype: protein_coding
description:
  Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: Rickettsia 17 kDa surface antigen, OmpA family.


ensembl_gene_id: PMI04_04024
symbol: EJK79197.1
gene_biotype: protein_coding
description:
  CBS domain-containing protein; PFAM: CBS domain, Domain of unknown function DUF21, Transporter associated domain.


ensembl_gene_id: PMI04_04036
symbol: EJK79209.1
gene_biotype: protein_coding
description:
  Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative.


ensembl_gene_id: PMI04_04043
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: PMI04_04049
symbol: EJK79222.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Transcriptional regulatory protein, C terminal.


ensembl_gene_id: PMI04_04052
symbol: EJK79225.1
gene_biotype: protein_coding
description:
  PFAM: HlyD family secretion protein; TIGRFAM: efflux pump membrane protein (multidrug resistance protein A).


ensembl_gene_id: PMI04_04056
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: PMI04_04057
symbol: rpsP
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: PMI04_04058
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: PMI04_04061
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: PMI04_04062
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: PMI04_04069
symbol: EJK79242.1
gene_biotype: protein_coding
description:
  Phosphotransferase system, mannose/fructose-specific component IIA; PFAM: PTS system fructose IIA component.


ensembl_gene_id: PMI04_04071
symbol: EJK79244.1
gene_biotype: protein_coding
description:
  Serine kinase of the HPr protein, regulates carbohydrate metabolism; PFAM: HPr Serine kinase C-terminal domain.


ensembl_gene_id: PMI04_04074
symbol: pckA
gene_biotype: protein_coding
description:
  ATP-dependent phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.


ensembl_gene_id: PMI04_04076
symbol: EJK79249.1
gene_biotype: protein_coding
description:
  Flavodoxin reductase family protein; PFAM: Oxidoreductase FAD-binding domain, Oxidoreductase NAD-binding domain.


ensembl_gene_id: PMI04_04088
symbol: ubiG
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: PMI04_04089
symbol: EJK79262.1
gene_biotype: protein_coding
description:
  Aspartate kinase; PFAM: ACT domain, Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class, aspartate kinase; Belongs to the aspartokinase family.


ensembl_gene_id: PMI04_04095
symbol: EJK79268.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase, teichoic and lipoteichoic acid D-alanine esterification; PFAM: short chain dehydrogenase.


ensembl_gene_id: PMI04_04106
symbol: EJK78946.1
gene_biotype: protein_coding
description:
  2''-5'' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: PMI04_04113
symbol: EJK78953.1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: AAA domain (Cdc48 subfamily), Clp amino terminal domain, C-terminal, D2-small domain, of ClpB protein, ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PMI04_04114
symbol: EJK78954.1
gene_biotype: protein_coding
description:
  Putative small protein containing a coiled-coil domain-containing protein; PFAM: Protein of unknown function (DUF1192).


ensembl_gene_id: PMI04_04115
symbol: EJK78955.1
gene_biotype: protein_coding
description:
  Putative NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: putative NAD(P)H quinone oxidoreductase, PIG3 family.


ensembl_gene_id: PMI04_04123
symbol: EJK78963.1
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: PMI04_04128
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: PMI04_04134
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: PMI04_04138
symbol: surE
gene_biotype: protein_coding
description:
  5''/3''-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: PMI04_04139
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: PMI04_04142
symbol: dksA
gene_biotype: protein_coding
description:
  RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: PMI04_04147
symbol: EJK78987.1
gene_biotype: protein_coding
description:
  Outer membrane protein; PFAM: Surface antigen variable number repeat, Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.


ensembl_gene_id: PMI04_04149
symbol: EJK78989.1
gene_biotype: protein_coding
description:
  PFAM: Serine dehydratase alpha chain, Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form.


ensembl_gene_id: PMI04_04153
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5''-phosphate decarboxylase, subfamily 1; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: PMI04_04162
symbol: EJK79002.1
gene_biotype: protein_coding
description:
  PFAM: Lyase, Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: PMI04_04166
symbol: EJK79006.1
gene_biotype: protein_coding
description:
  Alpha-glucuronidase; PFAM: Glycosyl hydrolase family 67 C-terminus, Glycosyl hydrolase family 67 middle domain, Glycosyl hydrolase family 67 N-terminus; Belongs to the glycosyl hydrolase 67 family.


ensembl_gene_id: PMI04_04178
symbol: EJK79018.1
gene_biotype: protein_coding
description:
  Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PMI04_04182
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: PMI04_04185
symbol: EJK79024.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain), e3 binding domain, Biotin-requiring enzyme.


ensembl_gene_id: PMI04_04191
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: PMI04_04193
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: PMI04_04200
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: PMI04_04201
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain, MGS-like domain, Carbamoyl-phosphate synthetase large chain, oligomerisation domain, Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.


ensembl_gene_id: PMI04_04204
symbol: carA
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain, Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.


ensembl_gene_id: PMI04_04207
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: PMI04_04218
symbol: EJK78812.1
gene_biotype: protein_coding
description:
  PFAM: Metallo-beta-lactamase superfamily, RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein.


ensembl_gene_id: PMI04_04219
symbol: coaX
gene_biotype: protein_coding
description:
  Pantothenate kinase, type III; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: PMI04_04220
symbol: EJK78814.1
gene_biotype: protein_coding
description:
  birA, biotin-(acetyl-CoA-carboxylase) ligase; PFAM: Biotin protein ligase C terminal domain, Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region.


ensembl_gene_id: PMI04_04221
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: PMI04_04222
symbol: EJK78816.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains, NADH-ubiquinone oxidoreductase chain 4, amino terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M.


ensembl_gene_id: PMI04_04223
symbol: EJK78817.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH dehydrogenase subunit 5 C-terminus, NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus, NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L.


ensembl_gene_id: PMI04_04224
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: PMI04_04225
symbol: EJK78819.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 6 (chain J); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PMI04_04226
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PMI04_04227
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 1 (chain H); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: PMI04_04228
symbol: EJK78822.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: PMI04_04229
symbol: EJK78823.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: PMI04_04230
symbol: EJK78824.1
gene_biotype: protein_coding
description:
  PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.


ensembl_gene_id: PMI04_04231
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: PMI04_04232
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH/F420H2 dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: PMI04_04233
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PMI04_04234
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 3 (chain A); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: PMI04_04237
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: PMI04_04242
symbol: EJK78836.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain; Belongs to the GST superfamily.


ensembl_gene_id: PMI04_04243
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine monophosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: PMI04_04250
symbol: EJK78844.1
gene_biotype: protein_coding
description:
  PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: PMI04_04251
symbol: EJK78845.1
gene_biotype: protein_coding
description:
  PFAM: Transketolase, thiamine diphosphate binding domain, Transketolase, C-terminal domain, Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast; Belongs to the transketolase family.


ensembl_gene_id: PMI04_04255
symbol: EJK78848.1
gene_biotype: protein_coding
description:
  5,10-methenyltetrahydrofolate synthetase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase.


ensembl_gene_id: PMI04_04257
symbol: aqpZ
gene_biotype: protein_coding
description:
  MIP family channel protein; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: PMI04_04261
symbol: EJK78628.1
gene_biotype: protein_coding
description:
  DNA-binding protein with HTH domain-containing protein; PFAM: Bacterial regulatory proteins, luxR family, Autoinducer binding domain.


ensembl_gene_id: PMI04_04286
symbol: EJK78653.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Pyridine nucleotide-disulphide oxidoreductase, dimerization domain.


ensembl_gene_id: PMI04_04300
symbol: mntH
gene_biotype: protein_coding
description:
  Natural resistance-associated macrophage protein metal ion transporter NRAMP; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.


ensembl_gene_id: PMI04_04307
symbol: cheB
gene_biotype: protein_coding
description:
  Protein-glutamate methylesterase/protein-glutamine glutaminase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: PMI04_04309
symbol: EJK78676.1
gene_biotype: protein_coding
description:
  Chemotaxis protein histidine kinase-like protein; PFAM: CheW-like domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Hpt domain.


ensembl_gene_id: PMI04_04318
symbol: EJK78685.1
gene_biotype: protein_coding
description:
  Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: ThiF family.


ensembl_gene_id: PMI04_04360
symbol: EJK78727.1
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase specialized sigma subunit, sigma24; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: PMI04_04369
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: PMI04_04370
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: PMI04_04372
symbol: greB
gene_biotype: protein_coding
description:
  Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.


ensembl_gene_id: PMI04_04381
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: PMI04_04382
symbol: rnd
gene_biotype: protein_coding
description:
  Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.


ensembl_gene_id: PMI04_04390
symbol: EJK78425.1
gene_biotype: protein_coding
description:
  Putative secreted protein; PFAM: Phage major tail protein 2; TIGRFAM: phage major tail protein, TP901-1 family.


ensembl_gene_id: PMI04_04517
symbol: rpmG
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: PMI04_04520
symbol: EJK78289.1
gene_biotype: protein_coding
description:
  DNA-binding ferritin-like protein (oxidative damage protectant); PFAM: Ferritin-like domain; Belongs to the Dps family.


ensembl_gene_id: PMI04_04522
symbol: EJK78291.1
gene_biotype: protein_coding
description:
  Cobaltochelatase, CobT subunit; PFAM: Cobalamin biosynthesis protein CobT VWA domain, Cobalamin biosynthesis protein CobT; TIGRFAM: cobaltochelatase, CobT subunit.


ensembl_gene_id: PMI04_04524
symbol: EJK78293.1
gene_biotype: protein_coding
description:
  Cobaltochelatase, CobS subunit; PFAM: AAA domain (dynein-related subfamily), Cobaltochelatase CobS subunit N terminal; TIGRFAM: cobaltochelatase, CobS subunit.


ensembl_gene_id: PMI04_04532
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: PMI04_04537
symbol: EJK78253.1
gene_biotype: protein_coding
description:
  PFAM: UDP-galactopyranose mutase, Flavin containing amine oxidoreductase; TIGRFAM: UDP-galactopyranose mutase.


ensembl_gene_id: PMI04_04554
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: PMI04_04573
symbol: EJK78221.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PMI04_04609
symbol: EJK78124.1
gene_biotype: protein_coding
description:
  Beta-fructosidase, levanase/invertase; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


