# pathwayInfo

id: PF13306
description: BspA type Leucine rich repeat region (6 copies)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13306
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13306_BspA_type_Leucine_rich_repeat_region_(6_copies)


id: PF13335
description: Magnesium chelatase, subunit ChlI C-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13335
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13335_Magnesium_chelatase,_subunit_ChlI_C-terminal


id: PF13336
description: Acetyl-CoA hydrolase/transferase C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13336
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13336_Acetyl-CoA_hydrolase/transferase_C-terminal_domain


id: PF13338
description: Transcriptional regulator, AbiEi antitoxin
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13338
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13338_Transcriptional_regulator,_AbiEi_antitoxin


id: PF13343
description: Bacterial extracellular solute-binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13343
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13343_Bacterial_extracellular_solute-binding_protein


id: PF13377
description: Periplasmic binding protein-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13377
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13377_Periplasmic_binding_protein-like_domain


id: PF13399
description: LytR cell envelope-related transcriptional attenuator
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13399
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13399_LytR_cell_envelope-related_transcriptional_attenuator


id: PF13416
description: Bacterial extracellular solute-binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13416
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13416_Bacterial_extracellular_solute-binding_protein


id: PF13491
description: 4TM region of DNA translocase FtsK/SpoIIIE
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13491
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13491_4TM_region_of_DNA_translocase_FtsK/SpoIIIE


id: PF13510
description: 2Fe-2S iron-sulfur cluster binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13510
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13510_2Fe-2S_iron-sulfur_cluster_binding_domain


id: PF13531
description: Bacterial extracellular solute-binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13531
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13531_Bacterial_extracellular_solute-binding_protein


id: PF13556
description: PucR C-terminal helix-turn-helix domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13556
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13556_PucR_C-terminal_helix-turn-helix_domain


id: PF13636
description: RNA-binding PUA-like domain of methyltransferase RsmF
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13636
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13636_RNA-binding_PUA-like_domain_of_methyltransferase_RsmF


id: PF13653
description: Glycerophosphoryl diester phosphodiesterase family
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13653
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13653_Glycerophosphoryl_diester_phosphodiesterase_family


id: PF13669
description: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13669
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13669_Glyoxalase/Bleomycin_resistance_protein/Dioxygenase_superfamily


id: PF13677
description: Membrane MotB of proton-channel complex MotA/MotB
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13677
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13677_Membrane_MotB_of_proton-channel_complex_MotA/MotB_


id: PF13722
description: 5TM C-terminal transporter carbon starvation CstA
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13722
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13722_5TM_C-terminal_transporter_carbon_starvation_CstA


id: PF13738
description: Pyridine nucleotide-disulphide oxidoreductase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13738
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13738_Pyridine_nucleotide-disulphide_oxidoreductase


id: PF13749
description: Putative ATP-dependent DNA helicase recG C-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13749
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13749_Putative_ATP-dependent_DNA_helicase_recG_C-terminal


id: PF13793
description: N-terminal domain of ribose phosphate pyrophosphokinase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13793
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF13793_N-terminal_domain_of_ribose_phosphate_pyrophosphokinase


id: PF14196
description: L-2-amino-thiazoline-4-carboxylic acid hydrolase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14196
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF14196_L-2-amino-thiazoline-4-carboxylic_acid_hydrolase


id: PF14278
description: Transcriptional regulator C-terminal region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14278
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF14278_Transcriptional_regulator_C-terminal_region


id: PF14480
description: DNA polymerase III polC-type N-terminus I
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14480
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF14480_DNA_polymerase_III_polC-type_N-terminus_I


id: PF14572
description: Phosphoribosyl synthetase-associated domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14572
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF14572_Phosphoribosyl_synthetase-associated_domain


id: PF14602
description: Hexapeptide repeat of succinyl-transferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14602
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF14602_Hexapeptide_repeat_of_succinyl-transferase


id: PF14667
description: Polysaccharide biosynthesis C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14667
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF14667_Polysaccharide_biosynthesis_C-terminal_domain


id: PF14691
description: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14691
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF14691_Dihydroprymidine_dehydrogenase_domain_II,_4Fe-4S_cluster


id: PF14714
description: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14714
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF14714_KH-domain-like_of_EngA_bacterial_GTPase_enzymes,_C-terminal


id: PF14748
description: Pyrroline-5-carboxylate reductase dimerisation
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14748
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF14748_Pyrroline-5-carboxylate_reductase_dimerisation


id: PF15919
description: HicB_like antitoxin of bacterial toxin-antitoxin system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF15919
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF15919_HicB_like_antitoxin_of_bacterial_toxin-antitoxin_system


id: PF16198
description: tRNA pseudouridylate synthase B C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16198
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16198_tRNA_pseudouridylate_synthase_B_C-terminal_domain


id: PF16320
description: Ribosomal protein L7/L12 dimerisation domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16320
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16320_Ribosomal_protein_L7/L12_dimerisation_domain


id: PF16321
description: Sigma 54 modulation/S30EA ribosomal protein C terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16321
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16321_Sigma_54_modulation/S30EA_ribosomal_protein_C_terminus


id: PF16592
description: REC lobe of CRISPR-associated endonuclease Cas9
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16592
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16592_REC_lobe_of_CRISPR-associated_endonuclease_Cas9


id: PF16595
description: PAM-interacting domain of CRISPR-associated endonuclease Cas9
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16595
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16595_PAM-interacting_domain_of_CRISPR-associated_endonuclease_Cas9


id: PF16654
description: Diaminopimelic acid dehydrogenase C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16654
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16654_Diaminopimelic_acid_dehydrogenase_C-terminal_domain


id: PF16658
description: Class II release factor RF3, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16658
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16658_Class_II_release_factor_RF3,_C-terminal_domain


id: PF16822
description: SGNH hydrolase-like domain, acetyltransferase AlgX
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16822
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16822_SGNH_hydrolase-like_domain,_acetyltransferase_AlgX


id: PF16886
description: ATPsynthase alpha/beta subunit N-term extension
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16886
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16886_ATPsynthase_alpha/beta_subunit_N-term_extension


id: PF16916
description: Dimerisation domain of Zinc Transporter
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16916
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16916_Dimerisation_domain_of_Zinc_Transporter


id: PF16924
description: Dipicolinate synthase subunit A N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16924
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16924_Dipicolinate_synthase_subunit_A_N-terminal_domain


id: PF16927
description: N-terminal 7TM region of histidine kinase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16927
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF16927_N-terminal_7TM_region_of_histidine_kinase


id: PF17125
description: N-terminal domain of 16S rRNA methyltransferase RsmF
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17125
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF17125_N-terminal_domain_of_16S_rRNA_methyltransferase_RsmF


id: PF17126
description: RsmF rRNA methyltransferase first C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17126
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF17126_RsmF_rRNA_methyltransferase_first_C-terminal_domain


id: PF17136
description: Ribosomal proteins 50S L24/mitochondrial 39S L24
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17136
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF17136_Ribosomal_proteins_50S_L24/mitochondrial_39S_L24


id: PF17147
description: Pyruvate:ferredoxin oxidoreductase core domain II
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17147
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF17147_Pyruvate:ferredoxin_oxidoreductase_core_domain_II


id: PF17167
description: Glycosyl hydrolase 36 superfamily, catalytic domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17167
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF17167_Glycosyl_hydrolase_36_superfamily,_catalytic_domain


id: PF17479
description: Protein of unknown function (DUF3048) C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17479
name:
  Protein Domains (Pfam).STRING_v12.0_1262863_STRINGid_PF17479_Protein_of_unknown_function_(DUF3048)_C-terminal_domain


id: SM00046
description: Diacylglycerol kinase catalytic domain (presumed)
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00046
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00046_Diacylglycerol_kinase_catalytic_domain_(presumed)


id: SM00052
description: Putative diguanylate phosphodiesterase
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00052
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00052_Putative_diguanylate_phosphodiesterase


id: SM00062
description: Bacterial periplasmic substrate-binding proteins
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00062
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00062_Bacterial_periplasmic_substrate-binding_proteins


id: SM00065
description: Domain present in phytochromes and cGMP-specific phosphodiesterases.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00065
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00065_Domain_present_in_phytochromes_and_cGMP-specific_phosphodiesterases.


id: SM00089
description: Repeats in polycystic kidney disease 1 (PKD1) and other proteins
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00089
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00089_Repeats_in_polycystic_kidney_disease_1_(PKD1)_and_other_proteins


id: SM00100
description: Cyclic nucleotide-monophosphate binding domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00100
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00100_Cyclic_nucleotide-monophosphate_binding_domain


id: SM00116
description: Domain in cystathionine beta-synthase and other proteins.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00116
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00116_Domain_in_cystathionine_beta-synthase_and_other_proteins.


id: SM00226
description: Low molecular weight phosphatase family
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00226
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00226_Low_molecular_weight_phosphatase_family


id: SM00228
description: Domain present in PSD-95, Dlg, and ZO-1/2.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00228
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00228_Domain_present_in_PSD-95,_Dlg,_and_ZO-1/2.


id: SM00271
description: DnaJ molecular chaperone homology domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00271
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00271_DnaJ_molecular_chaperone_homology_domain


id: SM00278
description: Helix-hairpin-helix DNA-binding motif class 1
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00278
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00278_Helix-hairpin-helix_DNA-binding_motif_class_1


id: SM00279
description: Helix-hairpin-helix class 2 (Pol1 family) motifs
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00279
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00279_Helix-hairpin-helix_class_2_(Pol1_family)_motifs


id: SM00304
description: HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00304
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00304_HAMP_(Histidine_kinases,_Adenylyl_cyclases,_Methyl_binding_proteins,_Phosphatases)_domain


id: SM00316
description: Ribosomal protein S1-like RNA-binding domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00316
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00316_Ribosomal_protein_S1-like_RNA-binding_domain


id: SM00327
description: Von Willebrand factor (vWF) type A domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00327
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00327_Von_Willebrand_factor_(vWF)_type_A_domain


id: SM00342
description: Helix_turn_helix, arabinose operon control protein
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00342
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00342_Helix_turn_helix,_arabinose_operon_control_protein


id: SM00345
description: Helix_turn_helix gluconate operon transcriptional repressor
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00345
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00345_Helix_turn_helix_gluconate_operon_transcriptional_repressor


id: SM00347
description: Helix_turn_helix multiple antibiotic resistance protein
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00347
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00347_Helix_turn_helix_multiple_antibiotic_resistance_protein


id: SM00354
description: Helix_turn _helix lactose operon repressor
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00354
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00354_Helix_turn__helix_lactose_operon_repressor


id: SM00359
description: Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00359
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00359_Putative_RNA-binding_Domain_in_PseudoUridine_synthase_and_Archaeosine_transglycosylase


id: SM00382
description: ATPases associated with a variety of cellular activities
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00382
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00382_ATPases_associated_with_a_variety_of_cellular_activities


id: SM00393
description: Putative single-stranded nucleic acids-binding domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00393
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00393_Putative_single-stranded_nucleic_acids-binding_domain


id: SM00411
description: Bacterial (prokaryotic) histone like domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00411
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00411_Bacterial_(prokaryotic)_histone_like_domain


id: SM00418
description: Helix_turn_helix, Arsenical Resistance Operon Repressor
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00418
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00418_Helix_turn_helix,_Arsenical_Resistance_Operon_Repressor


id: SM00420
description: Helix_turn_helix, Deoxyribose operon repressor
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00420
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00420_Helix_turn_helix,_Deoxyribose_operon_repressor


id: SM00436
description: Bacterial DNA topoisomeraes I ATP-binding domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00436
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00436_Bacterial_DNA_topoisomeraes_I_ATP-binding_domain


id: SM00437
description: Bacterial DNA topoisomerase I DNA-binding domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00437
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00437_Bacterial_DNA_topoisomerase_I_DNA-binding_domain


id: SM00471
description: Metal dependent phosphohydrolases with conserved HD motif.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00471
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00471_Metal_dependent_phosphohydrolases_with_conserved_HD_motif.


id: SM00479
description: Exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00479
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00479_Exonuclease_domain_in_DNA-polymerase_alpha_and_epsilon_chain,_ribonuclease_T_and_other_exonucleases


id: SM00481
description: DNA polymerase alpha chain like domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00481
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00481_DNA_polymerase_alpha_chain_like_domain


id: SM00490
description: Helicase superfamily c-terminal domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00490
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00490_Helicase_superfamily_c-terminal_domain


id: SM00493
description: Topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00493
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00493_Topoisomerases,_DnaG-type_primases,_OLD_family_nucleases_and_RecR_proteins


id: SM00529
description: Helix-turn-helix diphteria tox regulatory element
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00529
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00529_Helix-turn-helix_diphteria_tox_regulatory_element


id: SM00530
description: Helix-turn-helix XRE-family like proteins
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00530
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00530_Helix-turn-helix_XRE-family_like_proteins


id: SM00533
description: DNA-binding domain of DNA mismatch repair MUTS family
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00533
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00533_DNA-binding_domain_of_DNA_mismatch_repair_MUTS_family


id: SM00534
description: ATPase domain of DNA mismatch repair MUTS family
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00534
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00534_ATPase_domain_of_DNA_mismatch_repair_MUTS_family


id: SM00729
description: Elongator protein 3, MiaB family, Radical SAM
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00729
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00729_Elongator_protein_3,_MiaB_family,_Radical_SAM


id: SM00732
description: Likely ribonuclease with RNase H fold.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00732
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00732_Likely_ribonuclease_with_RNase_H_fold.


id: SM00738
description: In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00738
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00738_In_Spt5p,_this_domain_may_confer_affinity_for_Spt4p._It_possesses_a_RNP-like_fold.


id: SM00739
description: KOW (Kyprides, Ouzounis, Woese) motif.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00739
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00739_KOW_(Kyprides,_Ouzounis,_Woese)_motif.


id: SM00760
description: Bacterial dnaA protein helix-turn-helix domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00760
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00760_Bacterial_dnaA_protein_helix-turn-helix_domain


id: SM00840
description: This DALR domain is found in cysteinyl-tRNA-synthetases.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00840
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00840_This_DALR_domain_is_found_in_cysteinyl-tRNA-synthetases.


id: SM00843
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00843
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00843_This_domain_directs_oriented_DNA_translocation_and_forms_a_winged_helix_structure._Mutated_proteins_with_substitutions_in_the_FtsK_gamma_DNA-recognition_helix_are_impaired_in_DNA_binding.

description:
  This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


id: SM00859
description: Semialdehyde dehydrogenase, NAD binding domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00859
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00859_Semialdehyde_dehydrogenase,_NAD_binding_domain


id: SM00861
description: Transketolase, pyrimidine binding domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00861
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00861_Transketolase,_pyrimidine_binding_domain


id: SM00862
description: Transcriptional regulatory protein, C terminal
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00862
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00862_Transcriptional_regulatory_protein,_C_terminal


id: SM00863
description: Threonyl and Alanyl tRNA synthetase second additional domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00863
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00863_Threonyl_and_Alanyl_tRNA_synthetase_second_additional_domain


id: SM00865
description: Tubulin/FtsZ family, C-terminal domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00865
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00865_Tubulin/FtsZ_family,_C-terminal_domain


id: SM00876
description: Biotin and Thiamin Synthesis associated domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00876
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00876_Biotin_and_Thiamin_Synthesis_associated_domain


id: SM00895
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00895
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00895_This_entry_represents_the_C-terminal_ligand_binding_domain_of_many_members_of_the_GntR_family._This_domain_probably_binds_to_a_range_of_effector_molecules_that_regulate_the_transcription_of_genes_through_the_action_of_the_N-terminal_DNA-binding_...

description:
  This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding ...


id: SM00896
description: Ferredoxin-fold anticodon binding domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00896
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00896_Ferredoxin-fold_anticodon_binding_domain


id: SM00899
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00899
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00899_This_entry_represents_the_core_domain_of_the_ferrous_iron_(Fe2+)_transport_protein_FeoA_found_in_bacteria._This_domain_also_occurs_at_the_C-terminus_in_related_proteins._The_transporter_Feo_is_composed_of_three_proteins:_FeoA_a_small,_soluble_...

description:
  This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C-terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble ...


id: SM00900
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00900
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00900_This_conserved_region_includes_the_FMN-binding_site_of_the_NqrC_protein_as_well_as_the_NosR_and_NirI_regulatory_proteins.

description:
  This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins.


id: SM00930
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00930
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00930_This_domain_is_found_at_the_C-terminus_of_ABC_transporter_proteins_involved_in_D-methionine_transport_as_well_as_a_number_of_ferredoxin-like_proteins._This_domain_is_likely_to_act_as_a_substrate_binding_domain._The_domain_has_been_named_after_a_...

description:
  This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a ...


id: SM00934
description: Orotidine 5-phosphate decarboxylase / HUMPS family
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00934
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00934_Orotidine_5-phosphate_decarboxylase_/_HUMPS_family


id: SM00936
description: Penicillin-binding protein 5, C-terminal domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00936
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00936_Penicillin-binding_protein_5,_C-terminal_domain


id: SM00937
description: This domain is found in peptide chain release factors.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00937
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00937_This_domain_is_found_in_peptide_chain_release_factors.


id: SM00955
description: This domain is the catalytic domain of ribonuclease II.PUBMED:16806266
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00955
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00955_This_domain_is_the_catalytic_domain_of_ribonuclease_II.PUBMED:16806266


id: SM00963
description: SRP54-type protein, helical bundle domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00963
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00963_SRP54-type_protein,_helical_bundle_domain


id: SM00967
description: RNA 2-O ribose methyltransferase substrate binding
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00967
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00967_RNA_2-O_ribose_methyltransferase_substrate_binding


id: SM00981
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00981
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00981_The_THUMP_domain_is_named_after_after_thiouridine_synthases,_methylases_and_PSUSs_PUBMED:11295541._The_THUMP_domain_consists_of_about_110_amino_acid_residues._The_structure_of_ThiI_reveals_that_the_THUMP_has_a_fold_unlike_that_of_previously_...

description:
  The THUMP domain is named after after thiouridine synthases, methylases and PSUSs PUBMED:11295541. The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously ...


id: SM00982
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00982
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00982_This_domain_is_found_in_proteins_necessary_for_strand-specific_repair_in_DNA_such_as_TRCF_in_Escherichia_coli._A_lesion_in_the_template_strand_blocks_the_RNA_polymerase_complex_(RNAP)._The_RNAP-DNA-RNA_complex_is_specifically_recognised_by_the_...

description:
  This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the ...


id: SM00983
description: Thiamin pyrophosphokinase, vitamin B1 binding domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00983
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00983_Thiamin_pyrophosphokinase,_vitamin_B1_binding_domain


id: SM00987
description: UreE urease accessory protein, C-terminal domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM00987
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM00987_UreE_urease_accessory_protein,_C-terminal_domain


id: SM01012
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01012
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01012_ANTAR_(AmiR_and_NasR_transcription_antitermination_regulators)_is_an_RNA-binding_domain_found_in_bacterial_transcription_antitermination_regulatory_proteins._The_majority_of_the_domain_consists_of_a_coiled-coil.

description:
  ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.


id: SM01016
description: Arginyl tRNA synthetase N terminal dom
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01016
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01016_Arginyl_tRNA_synthetase_N_terminal_dom


id: SM01086
description: C-terminal, D2-small domain, of ClpB protein
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01086
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01086_C-terminal,_D2-small_domain,_of_ClpB_protein


id: SM01096
description: Carbamoyl-phosphate synthetase large chain, oligomerisation domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01096
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01096_Carbamoyl-phosphate_synthetase_large_chain,_oligomerisation_domain


id: SM01097
description: Carbamoyl-phosphate synthase small chain, CPSase domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01097
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01097_Carbamoyl-phosphate_synthase_small_chain,_CPSase_domain


id: SM01103
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01103
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01103_Escherichia_coli_YhbY_is_associated_with_pre-50S_ribosomal_subunits,_which_implies_a_function_in_ribosome_assembly._GFP_fused_to_a_single-domain_CRM_protein_from_maize_localises_to_the_nucleolus,_suggesting_that_an_analogous_activity_may_have_been_...

description:
  Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been ...


id: SM01118
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01118
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01118_These_sequences_are_functionally_identified_as_members_of_the_adenylate_cyclase_family,_which_catalyses_the_conversion_of_ATP_to_3,5-cyclic_AMP_and_pyrophosphate._Six_distinct_non-homologous_classes_of_AC_have_been_identified._The_structure_of_...

description:
  These sequences are functionally identified as members of the adenylate cyclase family, which catalyses the conversion of ATP to 3,5-cyclic AMP and pyrophosphate. Six distinct non-homologous classes of AC have been identified. The structure of ...


id: SM01131
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01131
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01131_This_domain_is_often_found_adjacent_to_the_DHH_domain_PF01368_and_is_called_DHHA2_for_DHH_associated_domain._This_domain_is_diagnostic_of_DHH_subfamily_2_members_(PUBMED:9478130)._The_domain_is_about_120_residues_long_and_contains_a_conserved_DXK_...

description:
  This domain is often found adjacent to the DHH domain PF01368 and is called DHHA2 for DHH associated domain. This domain is diagnostic of DHH subfamily 2 members (PUBMED:9478130). The domain is about 120 residues long and contains a conserved DXK ...


id: SM01208
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01208
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01208_This_domain_is_found_in_a_wide_range_of_extracellular_proteins._It_is_found_tandemly_repeated_in_up_to_8_copies._It_is_found_in_the_N-terminus_of_peptidases_belonging_to_the_M26_family_which_cleave_human_IgA._The_domain_is_also_found_in_proteins_...

description:
  This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins ...


id: SM01209
description: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01209
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01209_Phosphoribosylglycinamide_synthetase,_ATP-grasp_(A)_domain


id: SM01210
description: Phosphoribosylglycinamide synthetase, C domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01210
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01210_Phosphoribosylglycinamide_synthetase,_C_domain


id: SM01211
description: CobB/CobQ-like glutamine amidotransferase domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01211
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01211_CobB/CobQ-like_glutamine_amidotransferase_domain


id: SM01230
description: Glutamine synthetase, catalytic domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01230
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01230_Glutamine_synthetase,_catalytic_domain


id: SM01245
description: This domain is found at the N-terminus of jag proteins.
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01245
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01245_This_domain_is_found_at_the_N-terminus_of_jag_proteins.


id: SM01324
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01324
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01324_This_presumed_extracellular_domain_is_about_70_amino_acids_in_length._It_is_named_YARHG_after_a_conserved_motif_in_the_sequence._This_domain_is_associated_with_peptidases_and_bacterial_kinase_proteins._Its_molecular_function_is_unknown.

description:
  This presumed extracellular domain is about 70 amino acids in length. It is named YARHG after a conserved motif in the sequence. This domain is associated with peptidases and bacterial kinase proteins. Its molecular function is unknown.


id: SM01329
description: Isocitrate/isopropylmalate dehydrogenase
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01329
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01329_Isocitrate/isopropylmalate_dehydrogenase


id: SM01382
description: Ribosomal Proteins L2, C-terminal domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01382
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01382_Ribosomal_Proteins_L2,_C-terminal_domain


id: SM01390
description: Ribosomal protein S4/S9 N-terminal domain
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01390
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01390_Ribosomal_protein_S4/S9_N-terminal_domain


id: SM01477
description: DDE transposase retroviral integrase sub-family
memo: https://smart.embl.de/smart/do_annotation.pl?ACC=SM01477
name:
  Protein Domains (SMART).STRING_v12.0_1262863_STRINGid_SM01477_DDE_transposase_retroviral_integrase_sub-family


