# geneInfo

ensembl_gene_id: PAP_00005
symbol: PAP_00005
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00015
symbol: polB
gene_biotype: protein_coding
description:
  Hypothetical protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase; Belongs to the DNA polymerase delta/II small subunit family.


ensembl_gene_id: PAP_00020
symbol: polC
gene_biotype: protein_coding
description:
  DNA polymerase II large subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase.


ensembl_gene_id: PAP_00030
symbol: PAP_00030
gene_biotype: protein_coding
description:
  AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00035
symbol: PAP_00035
gene_biotype: protein_coding
description:
  CoA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00060
symbol: PAP_00060
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00070
symbol: PAP_00070
gene_biotype: protein_coding
description:
  Replication factor A complex, RPA14 subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00075
symbol: PAP_00075
gene_biotype: protein_coding
description:
  Replication factor A complex, RPA32 subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00080
symbol: ubiA
gene_biotype: protein_coding
description:
  Prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.


ensembl_gene_id: PAP_00085
symbol: PAP_00085
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00090
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: PAP_00105
symbol: PAP_00105
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: PAP_00110
symbol: PAP_00110
gene_biotype: protein_coding
description:
  Transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00120
symbol: PAP_00120
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0201 family.


ensembl_gene_id: PAP_00130
symbol: PAP_00130
gene_biotype: protein_coding
description:
  Zinc/iron permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00135
symbol: PAP_00135
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0200 family.


ensembl_gene_id: PAP_00140
symbol: hel308
gene_biotype: protein_coding
description:
  Dynein regulation protein LC7; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.


ensembl_gene_id: PAP_00150
symbol: PAP_00150
gene_biotype: protein_coding
description:
  Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00155
symbol: dppD
gene_biotype: protein_coding
description:
  DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00160
symbol: PAP_00160
gene_biotype: protein_coding
description:
  Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00190
symbol: PAP_00190
gene_biotype: protein_coding
description:
  tRNA methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00195
symbol: PAP_00195
gene_biotype: protein_coding
description:
  ferredoxin--NADP reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00200
symbol: PAP_00200
gene_biotype: protein_coding
description:
  Dihydropyrimidine dehydrogenase subunit A; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00220
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: PAP_00230
symbol: gcvT
gene_biotype: protein_coding
description:
  Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine.


ensembl_gene_id: PAP_00235
symbol: nucS
gene_biotype: protein_coding
description:
  Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.


ensembl_gene_id: PAP_00245
symbol: PAP_00245
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00250
symbol: mtnP
gene_biotype: protein_coding
description:
  5'-methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.


ensembl_gene_id: PAP_00255
symbol: mtaD
gene_biotype: protein_coding
description:
  N-ethylammeline chlorohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.


ensembl_gene_id: PAP_00265
symbol: nnrD
gene_biotype: protein_coding
description:
  Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]


ensembl_gene_id: PAP_00275
symbol: PAP_00275
gene_biotype: protein_coding
description:
  Alpha-amylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00290
symbol: PAP_00290
gene_biotype: protein_coding
description:
  ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00300
symbol: lig
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.


ensembl_gene_id: PAP_00305
symbol: PAP_00305
gene_biotype: protein_coding
description:
  Pantoate kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00310
symbol: PAP_00310
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00315
symbol: PAP_00315
gene_biotype: protein_coding
description:
  DNA polymerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00335
symbol: PAP_00335
gene_biotype: protein_coding
description:
  Effector of murein hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00340
symbol: PAP_00340
gene_biotype: protein_coding
description:
  Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00370
symbol: PAP_00370
gene_biotype: protein_coding
description:
  DNA methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00375
symbol: PAP_00375
gene_biotype: protein_coding
description:
  ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00380
symbol: PAP_00380
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00385
symbol: PAP_00385
gene_biotype: protein_coding
description:
  Tungsten ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00390
symbol: PAP_00390
gene_biotype: protein_coding
description:
  GTP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00410
symbol: PAP_00410
gene_biotype: protein_coding
description:
  Type II/IV secretion system ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00425
symbol: PAP_00425
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00455
symbol: PAP_00455
gene_biotype: protein_coding
description:
  MoxR associated protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00470
symbol: PAP_00470
gene_biotype: protein_coding
description:
  2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: PAP_00475
symbol: PAP_00475
gene_biotype: protein_coding
description:
  Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00480
symbol: PAP_00480
gene_biotype: protein_coding
description:
  Phosphopantetheine adenylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00490
symbol: PAP_00490
gene_biotype: protein_coding
description:
  acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00500
symbol: taw3
gene_biotype: protein_coding
description:
  Hypothetical protein; S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72; Belongs to the TYW3 family.


ensembl_gene_id: PAP_00505
symbol: PAP_00505
gene_biotype: protein_coding
description:
  RNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00510
symbol: ef1b
gene_biotype: protein_coding
description:
  Effector protein; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.


ensembl_gene_id: PAP_00520
symbol: PAP_00520
gene_biotype: protein_coding
description:
  Thermosome subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the TCP-1 chaperonin family.


ensembl_gene_id: PAP_00535
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: PAP_00540
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in  [...]


ensembl_gene_id: PAP_00555
symbol: PAP_00555
gene_biotype: protein_coding
description:
  5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00560
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GARS family.


ensembl_gene_id: PAP_00575
symbol: purE
gene_biotype: protein_coding
description:
  N5-carboxyaminoimidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: PAP_00580
symbol: purT
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.


ensembl_gene_id: PAP_00585
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: PAP_00600
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole-succinocarboxamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SAICAR synthetase family.


ensembl_gene_id: PAP_00605
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: PAP_00615
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: PAP_00620
symbol: PAP_00620
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide pyrophosphorylase; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.


ensembl_gene_id: PAP_00630
symbol: PAP_00630
gene_biotype: protein_coding
description:
  Riboflavin deaminase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00635
symbol: PAP_00635
gene_biotype: protein_coding
description:
  Riboflavin synthase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00640
symbol: ribA
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: PAP_00645
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: PAP_00650
symbol: purO
gene_biotype: protein_coding
description:
  IMP cyclohydrolase; Catalyzes the cyclization of 5-formylamidoimidazole-4- carboxamide ribonucleotide to IMP.


ensembl_gene_id: PAP_00660
symbol: purC-2
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole-succinocarboxamide synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the SAICAR synthetase family.


ensembl_gene_id: PAP_00665
symbol: thiC
gene_biotype: protein_coding
description:
  Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.


ensembl_gene_id: PAP_00670
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxal biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: PAP_00675
symbol: pdxT
gene_biotype: protein_coding
description:
  Glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: PAP_00680
symbol: PAP_00680
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: PAP_00750
symbol: taw1
gene_biotype: protein_coding
description:
  Radical SAM protein; Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe).


ensembl_gene_id: PAP_00760
symbol: PAP_00760
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00770
symbol: rps27ae
gene_biotype: protein_coding
description:
  30S ribosomal protein S27; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eS31 family.


ensembl_gene_id: PAP_00775
symbol: rps24e
gene_biotype: protein_coding
description:
  30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eS24 family.


ensembl_gene_id: PAP_00780
symbol: PAP_00780
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the GTP-dependent phosphorylation of the 3'- hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA).


ensembl_gene_id: PAP_00785
symbol: spt4
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit E'; Stimulates transcription elongation; Belongs to the archaeal Spt4 family.


ensembl_gene_id: PAP_00790
symbol: PAP_00790
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit E; Participates in both the initiation and recycling phases of transcription; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00795
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: PAP_00800
symbol: PAP_00800
gene_biotype: protein_coding
description:
  Cation transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00815
symbol: tmcA
gene_biotype: protein_coding
description:
  tRNA(Met) cytidine acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).


ensembl_gene_id: PAP_00835
symbol: ppcA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Catalyzes the irreversible beta-carboxylation of phosphoenolpyruvate (PEP) to form oxaloacetate (OAA), a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Belongs to the PEPCase type 2 family.


ensembl_gene_id: PAP_00840
symbol: PAP_00840
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00845
symbol: PAP_00845
gene_biotype: protein_coding
description:
  Biotin transporter BioY; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00860
symbol: PAP_00860
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00865
symbol: PAP_00865
gene_biotype: protein_coding
description:
  Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00880
symbol: PAP_00880
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00890
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: PAP_00895
symbol: PAP_00895
gene_biotype: protein_coding
description:
  Uracil permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00915
symbol: PAP_00915
gene_biotype: protein_coding
description:
  Universal stress protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_00920
symbol: PAP_00920
gene_biotype: protein_coding
description:
  ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: PAP_00935
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: PAP_00955
symbol: PAP_00955
gene_biotype: protein_coding
description:
  Hypothetical protein; Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA/RNA precursor pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.


ensembl_gene_id: PAP_00975
symbol: PAP_00975
gene_biotype: protein_coding
description:
  Oxidoreductase; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: PAP_00980
symbol: PAP_00980
gene_biotype: protein_coding
description:
  Aldehyde:ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01005
symbol: PAP_01005
gene_biotype: protein_coding
description:
  Adenylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01025
symbol: PAP_01025
gene_biotype: protein_coding
description:
  Flavodoxin; An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01040
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: PAP_01055
symbol: PAP_01055
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01090
symbol: PAP_01090
gene_biotype: protein_coding
description:
  TLDD - like protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01095
symbol: PAP_01095
gene_biotype: protein_coding
description:
  Subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01100
symbol: PAP_01100
gene_biotype: protein_coding
description:
  Subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01105
symbol: PAP_01105
gene_biotype: protein_coding
description:
  Subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01120
symbol: PAP_01120
gene_biotype: protein_coding
description:
  Subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01125
symbol: PAP_01125
gene_biotype: protein_coding
description:
  Subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01130
symbol: PAP_01130
gene_biotype: protein_coding
description:
  Subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01140
symbol: PAP_01140
gene_biotype: protein_coding
description:
  Mbh10 NADH dehydrogenase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01155
symbol: PAP_01155
gene_biotype: protein_coding
description:
  Mbh13 NADH dehydrogenase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01200
symbol: PAP_01200
gene_biotype: protein_coding
description:
  NADH/Ubiquinone/plastoquinone (complex I); Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01210
symbol: PAP_01210
gene_biotype: protein_coding
description:
  Mbh10 NADH dehydrogenase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the complex I 20 kDa subunit family.


ensembl_gene_id: PAP_01220
symbol: PAP_01220
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01225
symbol: PAP_01225
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit 1; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01230
symbol: PAP_01230
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01240
symbol: PAP_01240
gene_biotype: protein_coding
description:
  Nitroreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01245
symbol: PAP_01245
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01275
symbol: PAP_01275
gene_biotype: protein_coding
description:
  CoA disulfide reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01280
symbol: PAP_01280
gene_biotype: protein_coding
description:
  Nonsense-mediated mRNA decay protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01290
symbol: PAP_01290
gene_biotype: protein_coding
description:
  Membrane bound serine protease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01300
symbol: PAP_01300
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase S8 family.


ensembl_gene_id: PAP_01305
symbol: PAP_01305
gene_biotype: protein_coding
description:
  Peptidase M20; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01310
symbol: apgM
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: PAP_01340
symbol: PAP_01340
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PAP_01345
symbol: PAP_01345
gene_biotype: protein_coding
description:
  Multidrug transporter MatE; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01350
symbol: PAP_01350
gene_biotype: protein_coding
description:
  Multidrug transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01370
symbol: PAP_01370
gene_biotype: protein_coding
description:
  Glutamine synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glutamine synthetase family.


ensembl_gene_id: PAP_01375
symbol: PAP_01375
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaE; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01385
symbol: PAP_01385
gene_biotype: protein_coding
description:
  ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01390
symbol: mobA
gene_biotype: protein_coding
description:
  Hypothetical protein; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.


ensembl_gene_id: PAP_01405
symbol: rnz
gene_biotype: protein_coding
description:
  Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.


ensembl_gene_id: PAP_01415
symbol: PAP_01415
gene_biotype: protein_coding
description:
  Transcription elongation factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01425
symbol: PAP_01425
gene_biotype: protein_coding
description:
  Glucose-6-phosphate isomerase; Catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01430
symbol: PAP_01430
gene_biotype: protein_coding
description:
  ADP-dependent glucokinase; Catalyzes the phosphorylation of D-glucose to D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01435
symbol: PAP_01435
gene_biotype: protein_coding
description:
  Mannosyl-3-phosphoglycerate synthase; Functions in the osmolyte mannosylglycerate biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01440
symbol: mngB
gene_biotype: protein_coding
description:
  Hypothetical protein; Hydrolyzes mannosyl-3-phosphoglycerate (MPG) to form the osmolyte mannosylglycerate (MG).


ensembl_gene_id: PAP_01445
symbol: cpsB
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the mannose-6-phosphate isomerase type 2 family.


ensembl_gene_id: PAP_01450
symbol: PAP_01450
gene_biotype: protein_coding
description:
  Bifunctional phosphomannomutase/phosphoglucomutase; Catalyzes the interconversion of alpha-D-mannose 1-phosphate to alpha-D-mannose 6-phosphate and alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the phosphohexose mutase family.


ensembl_gene_id: PAP_01500
symbol: PAP_01500
gene_biotype: protein_coding
description:
  Cytochrome-c3 hydrogenase subunit gamma; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01510
symbol: PAP_01510
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit E; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01520
symbol: PAP_01520
gene_biotype: protein_coding
description:
  Glutamate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01525
symbol: PAP_01525
gene_biotype: protein_coding
description:
  NAD(P)H oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01535
symbol: rpl10e
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: PAP_01545
symbol: PAP_01545
gene_biotype: protein_coding
description:
  HIT family hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01565
symbol: thyX
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: PAP_01570
symbol: PAP_01570
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.


ensembl_gene_id: PAP_01580
symbol: PAP_01580
gene_biotype: protein_coding
description:
  CTU1/ATPBD3 family protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01590
symbol: PAP_01590
gene_biotype: protein_coding
description:
  Acylphosphatase; Catalyzes the hydrolysis of acylphosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01595
symbol: PAP_01595
gene_biotype: protein_coding
description:
  Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01600
symbol: PAP_01600
gene_biotype: protein_coding
description:
  Divalent ion tolerance protein CutA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01605
symbol: PAP_01605
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0215 family.


ensembl_gene_id: PAP_01620
symbol: PAP_01620
gene_biotype: protein_coding
description:
  Membrane dipeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01625
symbol: PAP_01625
gene_biotype: protein_coding
description:
  Nol1-nop2-sun family nucleolar protein III; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: PAP_01645
symbol: nep1
gene_biotype: protein_coding
description:
  Hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.


ensembl_gene_id: PAP_01655
symbol: eif5a
gene_biotype: protein_coding
description:
  Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.


ensembl_gene_id: PAP_01660
symbol: PAP_01660
gene_biotype: protein_coding
description:
  Agmatinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the arginase family.


ensembl_gene_id: PAP_01680
symbol: PAP_01680
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01685
symbol: PAP_01685
gene_biotype: protein_coding
description:
  Cobalt transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01690
symbol: PAP_01690
gene_biotype: protein_coding
description:
  Cobalt ABC transporter permease CbiQ; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01695
symbol: PAP_01695
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.


ensembl_gene_id: PAP_01710
symbol: rpl3
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: PAP_01720
symbol: rpl23
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: PAP_01725
symbol: rpl2p
gene_biotype: protein_coding
description:
  50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: PAP_01730
symbol: rps19p
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: PAP_01735
symbol: rpl22
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: PAP_01740
symbol: rps3
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: PAP_01745
symbol: rpl29
gene_biotype: protein_coding
description:
  50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: PAP_01750
symbol: PAP_01750
gene_biotype: protein_coding
description:
  Translation initiation factor SUI1; In yeast this protein is involved in start site selection during the initiation of translation; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the SUI1 family.


ensembl_gene_id: PAP_01755
symbol: rnp1
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family.


ensembl_gene_id: PAP_01760
symbol: rps17
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: PAP_01765
symbol: rpl14
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: PAP_01775
symbol: rps4e
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eS4 family.


ensembl_gene_id: PAP_01780
symbol: rpl5
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: PAP_01790
symbol: rps8
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: PAP_01795
symbol: rpl6
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: PAP_01800
symbol: rpl32e
gene_biotype: protein_coding
description:
  50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL32 family.


ensembl_gene_id: PAP_01805
symbol: rpl19e
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.


ensembl_gene_id: PAP_01810
symbol: rpl18
gene_biotype: protein_coding
description:
  50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: PAP_01820
symbol: rpl30p
gene_biotype: protein_coding
description:
  50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01825
symbol: rpl15
gene_biotype: protein_coding
description:
  50S ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: PAP_01830
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: PAP_01835
symbol: adkA
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the formation of 2 ADP from AMP and ATP; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the archaeal adenylate kinase family.


ensembl_gene_id: PAP_01845
symbol: rpl34e
gene_biotype: protein_coding
description:
  50S ribosomal protein L34; The function of this protein in the ribosome is unknown; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL34 family.


ensembl_gene_id: PAP_01850
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; Catalyzes the formation of (d)CDP from ATP and (d)CMP; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_01855
symbol: rpl14e
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds 50S subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL14 family.


ensembl_gene_id: PAP_01870
symbol: truB
gene_biotype: protein_coding
description:
  H/ACA RNA-protein complex protein Cbf5p; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.


ensembl_gene_id: PAP_01885
symbol: rps13
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: PAP_01890
symbol: rps4
gene_biotype: protein_coding
description:
  30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: PAP_01895
symbol: rps11
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: PAP_01900
symbol: rpoD
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.


ensembl_gene_id: PAP_01910
symbol: rpl18e
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL18 family.


ensembl_gene_id: PAP_01915
symbol: rpl13
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: PAP_01920
symbol: rps9
gene_biotype: protein_coding
description:
  30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: PAP_01925
symbol: rpoN
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family.


ensembl_gene_id: PAP_01935
symbol: rpoK
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.


ensembl_gene_id: PAP_01945
symbol: rps2
gene_biotype: protein_coding
description:
  30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: PAP_01950
symbol: PAP_01950
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the MEMO1 family.


ensembl_gene_id: PAP_01955
symbol: mvk
gene_biotype: protein_coding
description:
  Mevalonate kinase; Catalyzes the phosphorylation of (R)-mevalonate (MVA) to (R)- mevalonate 5-phosphate (MVAP). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoid compounds such as archaeal membrane lipids; Belongs to the GHMP kinase family. Mevalonate kinase subfamily.


ensembl_gene_id: PAP_01960
symbol: PAP_01960
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids.


ensembl_gene_id: PAP_01970
symbol: fni
gene_biotype: protein_coding
description:
  Isopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).


ensembl_gene_id: PAP_01975
symbol: rnj
gene_biotype: protein_coding
description:
  Ribonuclease J; An RNase that has 5'-3' exonuclease activity. May be involved in RNA degradation; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Archaeal RNase J subfamily.


ensembl_gene_id: PAP_01980
symbol: PAP_01980
gene_biotype: protein_coding
description:
  Serralysin; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: PAP_02000
symbol: leuS
gene_biotype: protein_coding
description:
  leucyl-tRNA synthetase; leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; Derived by  [...]


ensembl_gene_id: PAP_02005
symbol: PAP_02005
gene_biotype: protein_coding
description:
  4-oxalocrotonate tautomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02030
symbol: rpl15e
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL15 family.


ensembl_gene_id: PAP_02040
symbol: rnp3
gene_biotype: protein_coding
description:
  Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family.


ensembl_gene_id: PAP_02045
symbol: rnp2
gene_biotype: protein_coding
description:
  Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.


ensembl_gene_id: PAP_02055
symbol: psmA
gene_biotype: protein_coding
description:
  Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.


ensembl_gene_id: PAP_02060
symbol: PAP_02060
gene_biotype: protein_coding
description:
  Shwachman#Bodian#Diamond syndrome protein family; SBDS; similar to eukaryotic proteins involved in RNA metabolism or binding; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02065
symbol: rrp4
gene_biotype: protein_coding
description:
  RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.


ensembl_gene_id: PAP_02070
symbol: rrp41
gene_biotype: protein_coding
description:
  Exosome complex exonuclease Rrp41; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails.


ensembl_gene_id: PAP_02075
symbol: rrp42
gene_biotype: protein_coding
description:
  RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.


ensembl_gene_id: PAP_02085
symbol: rpoP
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family.


ensembl_gene_id: PAP_02090
symbol: PAP_02090
gene_biotype: protein_coding
description:
  Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome.


ensembl_gene_id: PAP_02100
symbol: PAP_02100
gene_biotype: protein_coding
description:
  Subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02125
symbol: PAP_02125
gene_biotype: protein_coding
description:
  Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02155
symbol: pfdB
gene_biotype: protein_coding
description:
  Prefoldin subunit beta; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.


ensembl_gene_id: PAP_02165
symbol: PAP_02165
gene_biotype: protein_coding
description:
  Phosphoesterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02180
symbol: PAP_02180
gene_biotype: protein_coding
description:
  tRNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02185
symbol: PAP_02185
gene_biotype: protein_coding
description:
  Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02190
symbol: PAP_02190
gene_biotype: protein_coding
description:
  ATP dependent DNA ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02195
symbol: PAP_02195
gene_biotype: protein_coding
description:
  Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.


ensembl_gene_id: PAP_02210
symbol: PAP_02210
gene_biotype: protein_coding
description:
  C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02220
symbol: PAP_02220
gene_biotype: protein_coding
description:
  C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02225
symbol: dtdA
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.


ensembl_gene_id: PAP_02230
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: PAP_02235
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: PAP_02240
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription antitermination protein NusG; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.


ensembl_gene_id: PAP_02245
symbol: rpl11
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.


ensembl_gene_id: PAP_02255
symbol: rplP0
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: PAP_02260
symbol: rpl12p
gene_biotype: protein_coding
description:
  50S ribosomal protein L12; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family.


ensembl_gene_id: PAP_02290
symbol: PAP_02290
gene_biotype: protein_coding
description:
  Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02305
symbol: PAP_02305
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02310
symbol: PAP_02310
gene_biotype: protein_coding
description:
  PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02325
symbol: PAP_02325
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0292 family.


ensembl_gene_id: PAP_02330
symbol: dnaG
gene_biotype: protein_coding
description:
  Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.


ensembl_gene_id: PAP_02340
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).


ensembl_gene_id: PAP_02345
symbol: PAP_02345
gene_biotype: protein_coding
description:
  Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02385
symbol: PAP_02385
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit N; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02390
symbol: PAP_02390
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit M; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02400
symbol: PAP_02400
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit B; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02405
symbol: PAP_02405
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit C; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02410
symbol: PAP_02410
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: PAP_02415
symbol: PAP_02415
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit I; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02420
symbol: PAP_02420
gene_biotype: protein_coding
description:
  Alpha-glucan phosphorylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02425
symbol: PAP_02425
gene_biotype: protein_coding
description:
  Competence protein ComA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02430
symbol: PAP_02430
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; eIF-2BA; catalyzes the binding of GTP to IF2; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eIF-2B alpha/beta/delta subunits family.


ensembl_gene_id: PAP_02460
symbol: PAP_02460
gene_biotype: protein_coding
description:
  NAD+ synthetase; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.


ensembl_gene_id: PAP_02465
symbol: PAP_02465
gene_biotype: protein_coding
description:
  Zinc-dependent protease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02475
symbol: PAP_02475
gene_biotype: protein_coding
description:
  Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02505
symbol: PAP_02505
gene_biotype: protein_coding
description:
  ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02545
symbol: PAP_02545
gene_biotype: protein_coding
description:
  2-amino-3-ketobutyrate CoA ligase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.


ensembl_gene_id: PAP_02550
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle.


ensembl_gene_id: PAP_02555
symbol: tdh
gene_biotype: protein_coding
description:
  L-threonine 3-dehydrogenase; Converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02560
symbol: PAP_02560
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: PAP_02565
symbol: PAP_02565
gene_biotype: protein_coding
description:
  NDP-sugar synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02570
symbol: PAP_02570
gene_biotype: protein_coding
description:
  Phospho-sugar mutase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02575
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02580
symbol: PAP_02580
gene_biotype: protein_coding
description:
  Daunorubicin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02590
symbol: PAP_02590
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02595
symbol: PAP_02595
gene_biotype: protein_coding
description:
  Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02600
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.


ensembl_gene_id: PAP_02605
symbol: PAP_02605
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02615
symbol: PAP_02615
gene_biotype: protein_coding
description:
  Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02650
symbol: gcvPA
gene_biotype: protein_coding
description:
  Glycine dehydrogenase subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.


ensembl_gene_id: PAP_02655
symbol: gcvPB
gene_biotype: protein_coding
description:
  Glycine dehydrogenase subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily.


ensembl_gene_id: PAP_02660
symbol: PAP_02660
gene_biotype: protein_coding
description:
  Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02705
symbol: rpoH
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.


ensembl_gene_id: PAP_02710
symbol: PAP_02710
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PAP_02715
symbol: PAP_02715
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PAP_02725
symbol: rpl30e
gene_biotype: protein_coding
description:
  50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL30 family.


ensembl_gene_id: PAP_02730
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription elongation factor NusA; Participates in transcription termination. Belongs to the NusA family.


ensembl_gene_id: PAP_02735
symbol: rps12
gene_biotype: protein_coding
description:
  30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.


ensembl_gene_id: PAP_02740
symbol: rps7
gene_biotype: protein_coding
description:
  30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: PAP_02745
symbol: fusA
gene_biotype: protein_coding
description:
  Elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: PAP_02755
symbol: tuf
gene_biotype: protein_coding
description:
  Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.


ensembl_gene_id: PAP_02760
symbol: rps10p
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: PAP_02780
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: PAP_02785
symbol: PAP_02785
gene_biotype: protein_coding
description:
  Archease; Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently.


ensembl_gene_id: PAP_02790
symbol: PAP_02790
gene_biotype: protein_coding
description:
  tRNA methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: PAP_02800
symbol: rtcB
gene_biotype: protein_coding
description:
  tRNA-splicing ligase RtcB; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the RtcB family.


ensembl_gene_id: PAP_02825
symbol: PAP_02825
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0145 family.


ensembl_gene_id: PAP_02830
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaC; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: PAP_02835
symbol: mutS2
gene_biotype: protein_coding
description:
  DNA mismatch repair protein; Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily.


ensembl_gene_id: PAP_02845
symbol: PAP_02845
gene_biotype: protein_coding
description:
  O-sialoglycoprotein endopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02855
symbol: gap
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase; Catalyzes the formation of 3-phospho-D-glycerol phosphate from D-glyceraldehyde 3-phosphate in glycolysis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02865
symbol: PAP_02865
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0235 family.


ensembl_gene_id: PAP_02890
symbol: PAP_02890
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02895
symbol: PAP_02895
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0127 family.


ensembl_gene_id: PAP_02905
symbol: crcB
gene_biotype: protein_coding
description:
  Hypothetical protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: PAP_02915
symbol: PAP_02915
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02920
symbol: PAP_02920
gene_biotype: protein_coding
description:
  Aspartate racemase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02925
symbol: uppS
gene_biotype: protein_coding
description:
  UDP-diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.


ensembl_gene_id: PAP_02935
symbol: PAP_02935
gene_biotype: protein_coding
description:
  Peptidase M24; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M24B family.


ensembl_gene_id: PAP_02940
symbol: rps8e
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02950
symbol: taw2
gene_biotype: protein_coding
description:
  tRNA wyosine derivatives biosynthesis protein Taw2; S-adenosyl-L-methionine-dependent transferase that acts as a component of the wyosine derivatives biosynthesis pathway. Catalyzes the transfer of the alpha-amino-alpha-carboxypropyl (acp) group from S- adenosyl-L-methionine to 4-demethylwyosine (imG-14), forming 7- aminocarboxypropyl-demethylwyosine (wybutosine-86) at position 37 of tRNA(Phe).


ensembl_gene_id: PAP_02980
symbol: PAP_02980
gene_biotype: protein_coding
description:
  Cobalt ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_02985
symbol: PAP_02985
gene_biotype: protein_coding
description:
  Small nuclear ribonucleoprotein; Enables 3` processing of polyadenylated mRNAs and tRNA precursors; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the snRNP Sm proteins family.


ensembl_gene_id: PAP_02990
symbol: rpl37e
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.


ensembl_gene_id: PAP_03010
symbol: PAP_03010
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0248 family.


ensembl_gene_id: PAP_03020
symbol: PAP_03020
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the arginase family.


ensembl_gene_id: PAP_03025
symbol: PAP_03025
gene_biotype: protein_coding
description:
  H/ACA RNA-protein complex protein Gar1; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03030
symbol: tfb
gene_biotype: protein_coding
description:
  Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).


ensembl_gene_id: PAP_03035
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: PAP_03075
symbol: PAP_03075
gene_biotype: protein_coding
description:
  ATPase; Originally found to be an inhibitor of the antiviral RNase-L in human cells; contains ABC-type nucleotide binding domains; putatively functions in RNA maturation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03080
symbol: PAP_03080
gene_biotype: protein_coding
description:
  Endoribonuclease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03090
symbol: PAP_03090
gene_biotype: protein_coding
description:
  Metalloprotease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03105
symbol: PAP_03105
gene_biotype: protein_coding
description:
  Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: PAP_03115
symbol: hjc
gene_biotype: protein_coding
description:
  Hypothetical protein; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family.


ensembl_gene_id: PAP_03120
symbol: cobB
gene_biotype: protein_coding
description:
  NAD-dependent protein deacylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sirtuin family. Class III subfamily.


ensembl_gene_id: PAP_03130
symbol: PAP_03130
gene_biotype: protein_coding
description:
  Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03135
symbol: PAP_03135
gene_biotype: protein_coding
description:
  Hydrothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03140
symbol: rpl35ae
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL33 family.


ensembl_gene_id: PAP_03145
symbol: trm1
gene_biotype: protein_coding
description:
  Hypothetical protein; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.


ensembl_gene_id: PAP_03150
symbol: PAP_03150
gene_biotype: protein_coding
description:
  Adenosylcobinamide amidohydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03160
symbol: PAP_03160
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0284 family.


ensembl_gene_id: PAP_03170
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: PAP_03175
symbol: PAP_03175
gene_biotype: protein_coding
description:
  GTP:adenosylcobinamide-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03180
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: PAP_03190
symbol: PAP_03190
gene_biotype: protein_coding
description:
  ATP pyrophosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03200
symbol: PAP_03200
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03205
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: PAP_03210
symbol: PAP_03210
gene_biotype: protein_coding
description:
  Formate dehydrogenase; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: PAP_03215
symbol: PAP_03215
gene_biotype: protein_coding
description:
  Glutamate synthase; Unknown function; probable involvement in glutamate synthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03225
symbol: PAP_03225
gene_biotype: protein_coding
description:
  Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03230
symbol: PAP_03230
gene_biotype: protein_coding
description:
  Formate dehydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03235
symbol: PAP_03235
gene_biotype: protein_coding
description:
  Formate transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03245
symbol: PAP_03245
gene_biotype: protein_coding
description:
  Cytochrome-c3 hydrogenase subunit gamma; Catalyzes the oxidation/reduction of cytochrome-c3; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03250
symbol: PAP_03250
gene_biotype: protein_coding
description:
  Sulfhydrogenase subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03255
symbol: PAP_03255
gene_biotype: protein_coding
description:
  Sulfhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03270
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: PAP_03275
symbol: PAP_03275
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.


ensembl_gene_id: PAP_03285
symbol: pcn
gene_biotype: protein_coding
description:
  DNA polymerase; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication.


ensembl_gene_id: PAP_03305
symbol: PAP_03305
gene_biotype: protein_coding
description:
  2-oxoacid:ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03310
symbol: PAP_03310
gene_biotype: protein_coding
description:
  2-oxoacid ferredoxin oxidoreductase subunit beta; Catalyzes the coenzyme A-dependent decarboxylation of 2-oxoacids, such as pyruvate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03330
symbol: PAP_03330
gene_biotype: protein_coding
description:
  Rubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.


ensembl_gene_id: PAP_03340
symbol: PAP_03340
gene_biotype: protein_coding
description:
  MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03380
symbol: PAP_03380
gene_biotype: protein_coding
description:
  GNAT family acetyltraansferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03390
symbol: PAP_03390
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PAP_03435
symbol: rps27e
gene_biotype: protein_coding
description:
  30S ribosomal protein S27; Although this protein has a potential zinc-binding site from the CXXC motifs, there is no experimental evidence that it binds zinc; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03440
symbol: eif2a
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.


ensembl_gene_id: PAP_03445
symbol: nop10
gene_biotype: protein_coding
description:
  Ribosome biogenesis protein Nop10; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.


ensembl_gene_id: PAP_03455
symbol: PAP_03455
gene_biotype: protein_coding
description:
  Phosphotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03460
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: PAP_03470
symbol: PAP_03470
gene_biotype: protein_coding
description:
  ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03505
symbol: PAP_03505
gene_biotype: protein_coding
description:
  Oxidative cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03510
symbol: rsmA
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.


ensembl_gene_id: PAP_03515
symbol: PAP_03515
gene_biotype: protein_coding
description:
  DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03525
symbol: rpl21e
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; Mediates an interaction between 5S and domains II and V of 23S; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL21 family.


ensembl_gene_id: PAP_03530
symbol: pus10
gene_biotype: protein_coding
description:
  Hypothetical protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.


ensembl_gene_id: PAP_03540
symbol: gatD
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.


ensembl_gene_id: PAP_03560
symbol: PAP_03560
gene_biotype: protein_coding
description:
  3-hydroxy-3-methylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the HMG-CoA reductase family.


ensembl_gene_id: PAP_03565
symbol: PAP_03565
gene_biotype: protein_coding
description:
  Phosphodiesterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03570
symbol: PAP_03570
gene_biotype: protein_coding
description:
  Deoxyribonuclease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03575
symbol: PAP_03575
gene_biotype: protein_coding
description:
  Inosine-5`-monophosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03580
symbol: PAP_03580
gene_biotype: protein_coding
description:
  Phosphohydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03600
symbol: PAP_03600
gene_biotype: protein_coding
description:
  Photosystem reaction center subunit H; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03605
symbol: PAP_03605
gene_biotype: protein_coding
description:
  Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03610
symbol: PAP_03610
gene_biotype: protein_coding
description:
  Acetyl CoA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03620
symbol: fen
gene_biotype: protein_coding
description:
  Endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as  [...]


ensembl_gene_id: PAP_03630
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P).


ensembl_gene_id: PAP_03645
symbol: prf1
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.


ensembl_gene_id: PAP_03665
symbol: PAP_03665
gene_biotype: protein_coding
description:
  Nucleotide pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03695
symbol: PAP_03695
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0107 family.


ensembl_gene_id: PAP_03715
symbol: PAP_03715
gene_biotype: protein_coding
description:
  30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03720
symbol: endA
gene_biotype: protein_coding
description:
  tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.


ensembl_gene_id: PAP_03735
symbol: PAP_03735
gene_biotype: protein_coding
description:
  Radical SAM protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03750
symbol: PAP_03750
gene_biotype: protein_coding
description:
  Anion transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03765
symbol: PAP_03765
gene_biotype: protein_coding
description:
  Carbon starvation protein CstA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03770
symbol: PAP_03770
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03775
symbol: PAP_03775
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03785
symbol: PAP_03785
gene_biotype: protein_coding
description:
  Amino acid transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03790
symbol: rps3ae
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eS1 family.


ensembl_gene_id: PAP_03800
symbol: PAP_03800
gene_biotype: protein_coding
description:
  Single-stranded DNA endonuclease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03805
symbol: rps15
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03835
symbol: PAP_03835
gene_biotype: protein_coding
description:
  GHMP kinase; Catalyzes the condensation of 4-aminobenzoate (pABA) with 5- phospho-alpha-D-ribose 1-diphosphate (PRPP) to produce beta- ribofuranosylaminobenzene 5'-phosphate (beta-RFA-P).


ensembl_gene_id: PAP_03840
symbol: PAP_03840
gene_biotype: protein_coding
description:
  N-glycosylase; DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double- stranded DNA substrates.


ensembl_gene_id: PAP_03850
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: PAP_03855
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: PAP_03860
symbol: PAP_03860
gene_biotype: protein_coding
description:
  Imidazoleglycerol-phosphate dehydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03865
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: PAP_03870
symbol: hisA
gene_biotype: protein_coding
description:
  Catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03875
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: PAP_03880
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-ATP pyrophosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; In the N-terminal section; belongs to the PRA-CH family.


ensembl_gene_id: PAP_03885
symbol: hisC
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase; Catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03905
symbol: PAP_03905
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03915
symbol: PAP_03915
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03925
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: PAP_03945
symbol: PAP_03945
gene_biotype: protein_coding
description:
  Sucrose transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03950
symbol: PAP_03950
gene_biotype: protein_coding
description:
  Magnesium chelatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03955
symbol: PAP_03955
gene_biotype: protein_coding
description:
  Cobaltochelatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03970
symbol: PAP_03970
gene_biotype: protein_coding
description:
  Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03980
symbol: PAP_03980
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_03985
symbol: thiM
gene_biotype: protein_coding
description:
  Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family.


ensembl_gene_id: PAP_03990
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: PAP_04005
symbol: PAP_04005
gene_biotype: protein_coding
description:
  Sugar-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04010
symbol: PAP_04010
gene_biotype: protein_coding
description:
  Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04055
symbol: rnhB
gene_biotype: protein_coding
description:
  Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.


ensembl_gene_id: PAP_04075
symbol: PAP_04075
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04080
symbol: PAP_04080
gene_biotype: protein_coding
description:
  Peptide transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04095
symbol: srp54
gene_biotype: protein_coding
description:
  Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: PAP_04115
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: PAP_04135
symbol: PAP_04135
gene_biotype: protein_coding
description:
  Diacetylchitobiose deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04145
symbol: PAP_04145
gene_biotype: protein_coding
description:
  Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: PAP_04155
symbol: PAP_04155
gene_biotype: protein_coding
description:
  Galactose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04160
symbol: PAP_04160
gene_biotype: protein_coding
description:
  Fibronectin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04165
symbol: rfcL
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily.


ensembl_gene_id: PAP_04170
symbol: rfcS
gene_biotype: protein_coding
description:
  Clamp loader protein; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily.


ensembl_gene_id: PAP_04180
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: PAP_04190
symbol: PAP_04190
gene_biotype: protein_coding
description:
  Peptidase; Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04200
symbol: PAP_04200
gene_biotype: protein_coding
description:
  Membrane-associated metalloprotease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04210
symbol: ftsY
gene_biotype: protein_coding
description:
  Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: PAP_04215
symbol: PAP_04215
gene_biotype: protein_coding
description:
  2(4Fe-4S) ferredoxin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04220
symbol: PAP_04220
gene_biotype: protein_coding
description:
  HAD family hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04235
symbol: PAP_04235
gene_biotype: protein_coding
description:
  Acetylornithine deacetylase; Catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04245
symbol: mtnA
gene_biotype: protein_coding
description:
  Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily.


ensembl_gene_id: PAP_04260
symbol: thrS
gene_biotype: protein_coding
description:
  Catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: PAP_04275
symbol: hisS
gene_biotype: protein_coding
description:
  histidyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: PAP_04280
symbol: nac
gene_biotype: protein_coding
description:
  NagC family transcriptional regulator; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.


ensembl_gene_id: PAP_04290
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: PAP_04295
symbol: PAP_04295
gene_biotype: protein_coding
description:
  Na-dependent transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04300
symbol: PAP_04300
gene_biotype: protein_coding
description:
  Pyruvate ferredoxin oxidoreductase subunit gamma; Catalyzes the ferredoxin-dependent oxidative decarboxylation of pyruvate to form acetyl-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04305
symbol: vorD
gene_biotype: protein_coding
description:
  2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04310
symbol: porA
gene_biotype: protein_coding
description:
  2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04315
symbol: PAP_04315
gene_biotype: protein_coding
description:
  2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04320
symbol: porD
gene_biotype: protein_coding
description:
  Pyuvate ferredoxin oxidoreductase subunit delta; Catalyzes the ferredoxin-dependent oxidative decarboxylation of pyruvate to form acetyl-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04330
symbol: PAP_04330
gene_biotype: protein_coding
description:
  Pyruvate ferredoxin oxidoreductase subunit beta; Catalyzes the formation of acetyl-CoA from pyruvate and coenzyme A; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04335
symbol: PAP_04335
gene_biotype: protein_coding
description:
  ATPase; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: PAP_04345
symbol: queC
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine synthase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: PAP_04385
symbol: PAP_04385
gene_biotype: protein_coding
description:
  Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04390
symbol: PAP_04390
gene_biotype: protein_coding
description:
  4-aminobutyrate aminotransferase; Catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PAP_04405
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: PAP_04410
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: PAP_04415
symbol: asnC
gene_biotype: protein_coding
description:
  asparaginyl-tRNA synthase; Catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04420
symbol: PAP_04420
gene_biotype: protein_coding
description:
  Amidohydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04440
symbol: PAP_04440
gene_biotype: protein_coding
description:
  Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.


ensembl_gene_id: PAP_04505
symbol: cheD
gene_biotype: protein_coding
description:
  Hypothetical protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: PAP_04525
symbol: cheB
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: PAP_04530
symbol: PAP_04530
gene_biotype: protein_coding
description:
  Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04560
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: PAP_04565
symbol: PAP_04565
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04595
symbol: PAP_04595
gene_biotype: protein_coding
description:
  2-haloalkanoic acid dehalogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04615
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: PAP_04645
symbol: PAP_04645
gene_biotype: protein_coding
description:
  Nodulation protein NfeD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04670
symbol: PAP_04670
gene_biotype: protein_coding
description:
  Thymidine phosphorylase; Catalyzes the conversion of AMP and phosphate to adenine and ribose 1,5-bisphosphate (R15P). Exhibits phosphorylase activity toward CMP and UMP in addition to AMP. Functions in an archaeal AMP degradation pathway, together with R15P isomerase and RubisCO. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.


ensembl_gene_id: PAP_04675
symbol: PAP_04675
gene_biotype: protein_coding
description:
  Hypothetical protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: PAP_04680
symbol: rpl7ae
gene_biotype: protein_coding
description:
  50S ribosomal protein L7; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.


ensembl_gene_id: PAP_04685
symbol: rps28e
gene_biotype: protein_coding
description:
  30S ribosomal protein S28; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eS28 family.


ensembl_gene_id: PAP_04695
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.


ensembl_gene_id: PAP_04700
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.


ensembl_gene_id: PAP_04705
symbol: rnp4
gene_biotype: protein_coding
description:
  Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.


ensembl_gene_id: PAP_04715
symbol: rps19e
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.


ensembl_gene_id: PAP_04720
symbol: PAP_04720
gene_biotype: protein_coding
description:
  DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the PDCD5 family.


ensembl_gene_id: PAP_04735
symbol: rpl39e
gene_biotype: protein_coding
description:
  50S ribosomal protein L39; Part of the polypeptide exit tunnel in the 50S ribosomal complex; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL39 family.


ensembl_gene_id: PAP_04740
symbol: rpl31e
gene_biotype: protein_coding
description:
  50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ribosomal protein L31e family.


ensembl_gene_id: PAP_04745
symbol: eif6
gene_biotype: protein_coding
description:
  Translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.


ensembl_gene_id: PAP_04750
symbol: rpl18a
gene_biotype: protein_coding
description:
  50S ribosomal protein LX; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04755
symbol: pfdA
gene_biotype: protein_coding
description:
  Prefoldin subunit alpha; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.


ensembl_gene_id: PAP_04760
symbol: PAP_04760
gene_biotype: protein_coding
description:
  NDP-sugar dehydratase or epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04775
symbol: PAP_04775
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04780
symbol: PAP_04780
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the thiolase-like superfamily. UPF0219 family.


ensembl_gene_id: PAP_04795
symbol: PAP_04795
gene_biotype: protein_coding
description:
  Osmotically inducible protein C; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04805
symbol: flpA
gene_biotype: protein_coding
description:
  Fibrillin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.


ensembl_gene_id: PAP_04810
symbol: PAP_04810
gene_biotype: protein_coding
description:
  C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04815
symbol: PAP_04815
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; eIF-2BB; catalyzes the binding of GTP to IF2; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eIF-2B alpha/beta/delta subunits family.


ensembl_gene_id: PAP_04820
symbol: PAP_04820
gene_biotype: protein_coding
description:
  Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04835
symbol: PAP_04835
gene_biotype: protein_coding
description:
  Heat-shock protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: PAP_04855
symbol: PAP_04855
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04865
symbol: xerA
gene_biotype: protein_coding
description:
  Recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Belongs to the 'phage' integrase family. XerA subfamily.


ensembl_gene_id: PAP_04875
symbol: pfkC
gene_biotype: protein_coding
description:
  Phosphofructokinase; Catalyzes the phosphorylation of fructose 6-phosphate to fructose 1,6-bisphosphate using ADP as the phosphate donor.


ensembl_gene_id: PAP_04890
symbol: thiI
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.


ensembl_gene_id: PAP_04900
symbol: PAP_04900
gene_biotype: protein_coding
description:
  Maleate cis-trans isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04910
symbol: PAP_04910
gene_biotype: protein_coding
description:
  4-aminobutyrate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PAP_04920
symbol: PAP_04920
gene_biotype: protein_coding
description:
  Sugar transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04935
symbol: PAP_04935
gene_biotype: protein_coding
description:
  Pyrazinamidase/nicotinamidase pxnc; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_04965
symbol: PAP_04965
gene_biotype: protein_coding
description:
  2-keto acid:ferredoxin oxidoreductase subunit alpha; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.


ensembl_gene_id: PAP_04985
symbol: PAP_04985
gene_biotype: protein_coding
description:
  Glycogen synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05000
symbol: PAP_05000
gene_biotype: protein_coding
description:
  Maltotriose-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05005
symbol: PAP_05005
gene_biotype: protein_coding
description:
  Malf sugar transport inner membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05015
symbol: PAP_05015
gene_biotype: protein_coding
description:
  Amylopullulanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05020
symbol: PAP_05020
gene_biotype: protein_coding
description:
  Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05025
symbol: PAP_05025
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0146 family.


ensembl_gene_id: PAP_05030
symbol: PAP_05030
gene_biotype: protein_coding
description:
  Phosphopentomutase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the phosphohexose mutase family.


ensembl_gene_id: PAP_05035
symbol: PAP_05035
gene_biotype: protein_coding
description:
  Metal dependent hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05045
symbol: PAP_05045
gene_biotype: protein_coding
description:
  Catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05055
symbol: PAP_05055
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05065
symbol: PAP_05065
gene_biotype: protein_coding
description:
  rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05085
symbol: PAP_05085
gene_biotype: protein_coding
description:
  Iron-dependent repressor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05105
symbol: PAP_05105
gene_biotype: protein_coding
description:
  Fucose isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05115
symbol: PAP_05115
gene_biotype: protein_coding
description:
  TrmB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05120
symbol: PAP_05120
gene_biotype: protein_coding
description:
  Trehalose synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05140
symbol: PAP_05140
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: PAP_05145
symbol: PAP_05145
gene_biotype: protein_coding
description:
  Glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05150
symbol: PAP_05150
gene_biotype: protein_coding
description:
  Dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05170
symbol: PAP_05170
gene_biotype: protein_coding
description:
  Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05185
symbol: PAP_05185
gene_biotype: protein_coding
description:
  Glycerate kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05190
symbol: PAP_05190
gene_biotype: protein_coding
description:
  Type I restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05225
symbol: PAP_05225
gene_biotype: protein_coding
description:
  Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05235
symbol: PAP_05235
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0310 family.


ensembl_gene_id: PAP_05255
symbol: PAP_05255
gene_biotype: protein_coding
description:
  Nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05265
symbol: PAP_05265
gene_biotype: protein_coding
description:
  Metal-dependent hydrolase; Catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0173 family.


ensembl_gene_id: PAP_05270
symbol: PAP_05270
gene_biotype: protein_coding
description:
  acetyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05275
symbol: PAP_05275
gene_biotype: protein_coding
description:
  Indolepyruvate oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.


ensembl_gene_id: PAP_05280
symbol: PAP_05280
gene_biotype: protein_coding
description:
  Indolepyruvate oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05285
symbol: tbp
gene_biotype: protein_coding
description:
  TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.


ensembl_gene_id: PAP_05295
symbol: PAP_05295
gene_biotype: protein_coding
description:
  Transcription factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05305
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: PAP_05315
symbol: PAP_05315
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the DEAD box helicase family.


ensembl_gene_id: PAP_05340
symbol: PAP_05340
gene_biotype: protein_coding
description:
  Bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; Type IV fructose-1,6-bisphosphatase; has dual activities; FBPase; IMPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05350
symbol: egsA
gene_biotype: protein_coding
description:
  Glycerol-1-phosphate dehydrogenase; Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea. Belongs to the glycerol-1-phosphate dehydrogenase family.


ensembl_gene_id: PAP_05355
symbol: PAP_05355
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0179 family.


ensembl_gene_id: PAP_05360
symbol: ahcY
gene_biotype: protein_coding
description:
  S-adenosyl-L-homocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: PAP_05375
symbol: PAP_05375
gene_biotype: protein_coding
description:
  Lysophospholipase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05425
symbol: eif2b
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-beta/eIF-5 family.


ensembl_gene_id: PAP_05430
symbol: PAP_05430
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the MCM family.


ensembl_gene_id: PAP_05440
symbol: PAP_05440
gene_biotype: protein_coding
description:
  Peptidase M42; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05465
symbol: pxpA
gene_biotype: protein_coding
description:
  LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: PAP_05470
symbol: PAP_05470
gene_biotype: protein_coding
description:
  Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05475
symbol: PAP_05475
gene_biotype: protein_coding
description:
  Urea amidolyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05480
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.


ensembl_gene_id: PAP_05500
symbol: PAP_05500
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05515
symbol: PAP_05515
gene_biotype: protein_coding
description:
  DNA repair helicase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05520
symbol: PAP_05520
gene_biotype: protein_coding
description:
  Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05525
symbol: PAP_05525
gene_biotype: protein_coding
description:
  D-nopaline dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05530
symbol: PAP_05530
gene_biotype: protein_coding
description:
  Polyferredoxin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05535
symbol: PAP_05535
gene_biotype: protein_coding
description:
  Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05545
symbol: PAP_05545
gene_biotype: protein_coding
description:
  Proline permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PAP_05560
symbol: PAP_05560
gene_biotype: protein_coding
description:
  Gtp1/obg family GTP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05610
symbol: surE
gene_biotype: protein_coding
description:
  5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: PAP_05625
symbol: PAP_05625
gene_biotype: protein_coding
description:
  Osmoprotection protein (proW-1); Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05640
symbol: PAP_05640
gene_biotype: protein_coding
description:
  Osmoprotection protein (proX); Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05645
symbol: PAP_05645
gene_biotype: protein_coding
description:
  2-keto acid:ferredoxin oxidoreductase subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05650
symbol: PAP_05650
gene_biotype: protein_coding
description:
  2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05655
symbol: PAP_05655
gene_biotype: protein_coding
description:
  2-oxoglutarate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05660
symbol: PAP_05660
gene_biotype: protein_coding
description:
  2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Catalyzes the ferredoxin-dependent oxidative decarboxylation of 2-oxoglutarate forming succinyl-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05675
symbol: PAP_05675
gene_biotype: protein_coding
description:
  2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Catalyzes the ferredoxin-dependent oxidative decarboxylation 2-oxoglutarate forming succinyl-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05685
symbol: PAP_05685
gene_biotype: protein_coding
description:
  Dolichol-phosphate mannose synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05700
symbol: priS
gene_biotype: protein_coding
description:
  DNA primase; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play  [...]


ensembl_gene_id: PAP_05705
symbol: priL
gene_biotype: protein_coding
description:
  Hypothetical protein; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair.


ensembl_gene_id: PAP_05755
symbol: PAP_05755
gene_biotype: protein_coding
description:
  Iron-sulfur cluster assembly protein HesB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05760
symbol: dapA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: PAP_05765
symbol: rpl40e
gene_biotype: protein_coding
description:
  50S ribosomal protein L40; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eL40 family.


ensembl_gene_id: PAP_05785
symbol: PAP_05785
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyladenosine biosynthesis protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: PAP_05805
symbol: PAP_05805
gene_biotype: protein_coding
description:
  Asparagine synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05815
symbol: PAP_05815
gene_biotype: protein_coding
description:
  CDP-4-dehydro-6-deoxy-D-gulose 4-reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05830
symbol: gyaR
gene_biotype: protein_coding
description:
  Glyoxylate reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05835
symbol: PAP_05835
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PAP_05840
symbol: PAP_05840
gene_biotype: protein_coding
description:
  Myo-inositol-1-phosphate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05845
symbol: PAP_05845
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0147 family.


ensembl_gene_id: PAP_05850
symbol: PAP_05850
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; Catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05865
symbol: PAP_05865
gene_biotype: protein_coding
description:
  Fumarate hydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05890
symbol: PAP_05890
gene_biotype: protein_coding
description:
  Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05900
symbol: PAP_05900
gene_biotype: protein_coding
description:
  Cysteine synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_05935
symbol: ftsZ-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: PAP_05950
symbol: ribL
gene_biotype: protein_coding
description:
  FAD synthase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme.


ensembl_gene_id: PAP_05960
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: PAP_05975
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: PAP_05980
symbol: PAP_05980
gene_biotype: protein_coding
description:
  Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: PAP_05990
symbol: queE
gene_biotype: protein_coding
description:
  7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: PAP_06000
symbol: mptA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin.


ensembl_gene_id: PAP_06015
symbol: PAP_06015
gene_biotype: protein_coding
description:
  Peptidase U62 modulator of DNA gyrase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06030
symbol: PAP_06030
gene_biotype: protein_coding
description:
  Peptidase U34; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06035
symbol: PAP_06035
gene_biotype: protein_coding
description:
  Iron ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06060
symbol: PAP_06060
gene_biotype: protein_coding
description:
  Iron transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06065
symbol: PAP_06065
gene_biotype: protein_coding
description:
  FeoA family protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06080
symbol: PAP_06080
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06090
symbol: fau-1
gene_biotype: protein_coding
description:
  RNA-binding protein; Probable RNase involved in rRNA stability through maturation and/or degradation of precursor rRNAs. Binds to RNA in loop regions with AU-rich sequences.


ensembl_gene_id: PAP_06095
symbol: PAP_06095
gene_biotype: protein_coding
description:
  Chromosome segregation protein ScpA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06100
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: PAP_06210
symbol: radB
gene_biotype: protein_coding
description:
  DNA repair protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange.


ensembl_gene_id: PAP_06220
symbol: PAP_06220
gene_biotype: protein_coding
description:
  Cobinamide adenolsyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06255
symbol: PAP_06255
gene_biotype: protein_coding
description:
  Hypothetical protein; Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency; Belongs to the THEP1 NTPase family.


ensembl_gene_id: PAP_06260
symbol: PAP_06260
gene_biotype: protein_coding
description:
  Large helicase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06275
symbol: PAP_06275
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06285
symbol: PAP_06285
gene_biotype: protein_coding
description:
  Hydrogenase formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06295
symbol: PAP_06295
gene_biotype: protein_coding
description:
  Inosine monophosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06330
symbol: mptE
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of diphosphate from ATP to 6- hydroxymethyl-7,8-dihydropterin (6-HMD), leading to 6-hydroxymethyl- 7,8-dihydropterin diphosphate (6-HMDP).


ensembl_gene_id: PAP_06335
symbol: PAP_06335
gene_biotype: protein_coding
description:
  Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06340
symbol: PAP_06340
gene_biotype: protein_coding
description:
  Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06350
symbol: PAP_06350
gene_biotype: protein_coding
description:
  Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06385
symbol: psmB
gene_biotype: protein_coding
description:
  Proteasome subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.


ensembl_gene_id: PAP_06400
symbol: albA
gene_biotype: protein_coding
description:
  DNA-binding protein; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.


ensembl_gene_id: PAP_06405
symbol: PAP_06405
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: PAP_06425
symbol: PAP_06425
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06445
symbol: PAP_06445
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0251 family.


ensembl_gene_id: PAP_06465
symbol: PAP_06465
gene_biotype: protein_coding
description:
  6-carboxy-5,6,7,8-tetrahydropterin synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06470
symbol: PAP_06470
gene_biotype: protein_coding
description:
  Chromate resistance protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06485
symbol: PAP_06485
gene_biotype: protein_coding
description:
  Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06500
symbol: PAP_06500
gene_biotype: protein_coding
description:
  XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06530
symbol: PAP_06530
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06540
symbol: PAP_06540
gene_biotype: protein_coding
description:
  Fe-S protein, radical SAM family; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06565
symbol: PAP_06565
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06570
symbol: PAP_06570
gene_biotype: protein_coding
description:
  Molybdopterin adenylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06590
symbol: PAP_06590
gene_biotype: protein_coding
description:
  Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06600
symbol: PAP_06600
gene_biotype: protein_coding
description:
  Cro regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: PAP_06615
symbol: PAP_06615
gene_biotype: protein_coding
description:
  Threonylcarbamoyladenosine tRNA methylthiotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06625
symbol: dphB
gene_biotype: protein_coding
description:
  Diphthine synthase; S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.


ensembl_gene_id: PAP_06680
symbol: tdk
gene_biotype: protein_coding
description:
  Thymidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06685
symbol: PAP_06685
gene_biotype: protein_coding
description:
  6-pyruvoyl tetrahydropterin synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06700
symbol: dacZ
gene_biotype: protein_coding
description:
  Hypothetical protein; Diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP is a second messenger for intracellular signal transduction involved in the control of important regulatory processes such as osmoregulation.


ensembl_gene_id: PAP_06710
symbol: PAP_06710
gene_biotype: protein_coding
description:
  Xanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06715
symbol: cysS
gene_biotype: protein_coding
description:
  cysteinyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06725
symbol: PAP_06725
gene_biotype: protein_coding
description:
  Cobalamin adenosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06735
symbol: PAP_06735
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06745
symbol: ychF
gene_biotype: protein_coding
description:
  Translation-associated GTPase; The crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06750
symbol: PAP_06750
gene_biotype: protein_coding
description:
  Adenylate cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06760
symbol: ubiX
gene_biotype: protein_coding
description:
  Aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: PAP_06795
symbol: rps17E
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eS17 family.


ensembl_gene_id: PAP_06800
symbol: PAP_06800
gene_biotype: protein_coding
description:
  Damage-inducible protein DinF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06810
symbol: PAP_06810
gene_biotype: protein_coding
description:
  Helicase; Hel112; monomeric form of the enzyme from Sulfolobus shows 3'-5' ATP-dependent helicase activity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06820
symbol: PAP_06820
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 57 family.


ensembl_gene_id: PAP_06825
symbol: PAP_06825
gene_biotype: protein_coding
description:
  Nitrogen regulatory protein P-II; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06865
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: PAP_06880
symbol: PAP_06880
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis protein UbiE; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06885
symbol: rbcL
gene_biotype: protein_coding
description:
  Ribulose bisphosphate carboxylase; Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3- phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase. Belongs to the RuBisCO large chain family. Type III subfamily.


ensembl_gene_id: PAP_06930
symbol: PAP_06930
gene_biotype: protein_coding
description:
  alanyl-tRNA editing protein AlaX; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_06940
symbol: PAP_06940
gene_biotype: protein_coding
description:
  Amino acid permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07000
symbol: nfi
gene_biotype: protein_coding
description:
  Hypothetical protein; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.


ensembl_gene_id: PAP_07010
symbol: ribK
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.


ensembl_gene_id: PAP_07015
symbol: PAP_07015
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07020
symbol: PAP_07020
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07025
symbol: PAP_07025
gene_biotype: protein_coding
description:
  NDP-sugar dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: PAP_07045
symbol: argS
gene_biotype: protein_coding
description:
  arginyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PAP_07050
symbol: PAP_07050
gene_biotype: protein_coding
description:
  5'-methylthioadenosine phosphorylase; Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage.


ensembl_gene_id: PAP_07055
symbol: pcp
gene_biotype: protein_coding
description:
  Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.


ensembl_gene_id: PAP_07075
symbol: PAP_07075
gene_biotype: protein_coding
description:
  Peptidase M32; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.


ensembl_gene_id: PAP_07090
symbol: PAP_07090
gene_biotype: protein_coding
description:
  TATA binding protein (TBP)-interacting protein (TIP49); Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07105
symbol: PAP_07105
gene_biotype: protein_coding
description:
  Sulfur carrier protein ThiS; With ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07125
symbol: top6A
gene_biotype: protein_coding
description:
  DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family.


ensembl_gene_id: PAP_07130
symbol: top6B
gene_biotype: protein_coding
description:
  DNA topoisomerase; Relaxes both positive and negative superturns and exhibits a strong decatenase activity.


ensembl_gene_id: PAP_07135
symbol: PAP_07135
gene_biotype: protein_coding
description:
  RNA-processing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07145
symbol: eif1a
gene_biotype: protein_coding
description:
  Translation initiation factor 1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.


ensembl_gene_id: PAP_07160
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily.


ensembl_gene_id: PAP_07165
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07180
symbol: truA
gene_biotype: protein_coding
description:
  Hypothetical protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.


ensembl_gene_id: PAP_07190
symbol: mtaD-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.


ensembl_gene_id: PAP_07195
symbol: PAP_07195
gene_biotype: protein_coding
description:
  Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07210
symbol: PAP_07210
gene_biotype: protein_coding
description:
  Digeranylgeranylglycerophospholipid reductase; Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3- diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di- O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains.


ensembl_gene_id: PAP_07235
symbol: PAP_07235
gene_biotype: protein_coding
description:
  tRNA methyltransferase; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family.


ensembl_gene_id: PAP_07245
symbol: PAP_07245
gene_biotype: protein_coding
description:
  Sam Hydroxide Adenosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07250
symbol: PAP_07250
gene_biotype: protein_coding
description:
  Nicotinamide-nucleotide adenylyltransferase; Catalyzes the formation of NAD+ from nicotinamide ribonucleotide and ATP; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07315
symbol: PAP_07315
gene_biotype: protein_coding
description:
  Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07365
symbol: PAP_07365
gene_biotype: protein_coding
description:
  Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07380
symbol: PAP_07380
gene_biotype: protein_coding
description:
  Nol1-nop2-sun family nucleolar protein II; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: PAP_07460
symbol: PAP_07460
gene_biotype: protein_coding
description:
  DNA methylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07490
symbol: moaA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family.


ensembl_gene_id: PAP_07495
symbol: PAP_07495
gene_biotype: protein_coding
description:
  Stress-inducible protein, OsmC/Ohr family; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07555
symbol: PAP_07555
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PAP_07615
symbol: cpgS
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP.


ensembl_gene_id: PAP_07620
symbol: PAP_07620
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07625
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).


ensembl_gene_id: PAP_07630
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.


ensembl_gene_id: PAP_07660
symbol: PAP_07660
gene_biotype: protein_coding
description:
  Indolepyruvate oxidoreductase; Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07665
symbol: lysS
gene_biotype: protein_coding
description:
  lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PAP_07685
symbol: htpX
gene_biotype: protein_coding
description:
  Protease; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M48B family.


ensembl_gene_id: PAP_07690
symbol: PAP_07690
gene_biotype: protein_coding
description:
  Kinase; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily.


ensembl_gene_id: PAP_07700
symbol: mat
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP; Belongs to the AdoMet synthase 2 family.


ensembl_gene_id: PAP_07710
symbol: PAP_07710
gene_biotype: protein_coding
description:
  Zinc-dependent hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07715
symbol: PAP_07715
gene_biotype: protein_coding
description:
  Hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: PAP_07725
symbol: rad50
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily.


ensembl_gene_id: PAP_07730
symbol: mre11
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family.


ensembl_gene_id: PAP_07745
symbol: PAP_07745
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoeA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07755
symbol: tiaS
gene_biotype: protein_coding
description:
  tRNA(Ile2) 2-agmatinylcytidine synthetase; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.


ensembl_gene_id: PAP_07770
symbol: PAP_07770
gene_biotype: protein_coding
description:
  Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07820
symbol: tgtA
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.


ensembl_gene_id: PAP_07830
symbol: PAP_07830
gene_biotype: protein_coding
description:
  Phosphatase-like protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07845
symbol: PAP_07845
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0212 family.


ensembl_gene_id: PAP_07855
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: PAP_07880
symbol: PAP_07880
gene_biotype: protein_coding
description:
  MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GbsR family.


ensembl_gene_id: PAP_07885
symbol: carS
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.


ensembl_gene_id: PAP_07920
symbol: PAP_07920
gene_biotype: protein_coding
description:
  Glycosyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07940
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: PAP_07945
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: PAP_07960
symbol: PAP_07960
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07965
symbol: PAP_07965
gene_biotype: protein_coding
description:
  CRISPR-associated protein DevR; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07975
symbol: PAP_07975
gene_biotype: protein_coding
description:
  Hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).


ensembl_gene_id: PAP_07980
symbol: pelA
gene_biotype: protein_coding
description:
  mRNA surveillance protein Pelota; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity.


ensembl_gene_id: PAP_07985
symbol: PAP_07985
gene_biotype: protein_coding
description:
  glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_07990
symbol: PAP_07990
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08000
symbol: PAP_08000
gene_biotype: protein_coding
description:
  methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08005
symbol: rtcA
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.


ensembl_gene_id: PAP_08040
symbol: PAP_08040
gene_biotype: protein_coding
description:
  Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08055
symbol: PAP_08055
gene_biotype: protein_coding
description:
  Arginase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the arginase family.


ensembl_gene_id: PAP_08060
symbol: PAP_08060
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0148 family.


ensembl_gene_id: PAP_08075
symbol: rgy
gene_biotype: protein_coding
description:
  Reverse gyrase; Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication; In the C-terminal section; belongs to the prokaryotic type I/III topoisomerase family.


ensembl_gene_id: PAP_08105
symbol: PAP_08105
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids.


ensembl_gene_id: PAP_08150
symbol: nth
gene_biotype: protein_coding
description:
  Hypothetical protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: PAP_08160
symbol: PAP_08160
gene_biotype: protein_coding
description:
  Potassium channel protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08170
symbol: PAP_08170
gene_biotype: protein_coding
description:
  Divalent cation transporter, MgtE-like protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08180
symbol: PAP_08180
gene_biotype: protein_coding
description:
  Alanine aminotransferase; Catalyzes the transamination of pyruvate or with glutamate; activity is seen with alanine, glutamate, and aspartate with either 2-oxoglutarate or pyruvate as the amino acceptor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08195
symbol: PAP_08195
gene_biotype: protein_coding
description:
  Kojibiose phosphorylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08210
symbol: PAP_08210
gene_biotype: protein_coding
description:
  MalE-like maltose/maltodextrin ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08240
symbol: PAP_08240
gene_biotype: protein_coding
description:
  Carbamoyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08250
symbol: PAP_08250
gene_biotype: protein_coding
description:
  Deoxyhypusine synthase; Transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08255
symbol: PAP_08255
gene_biotype: protein_coding
description:
  mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08260
symbol: PAP_08260
gene_biotype: protein_coding
description:
  Sugar fermentation stimulation protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08305
symbol: PAP_08305
gene_biotype: protein_coding
description:
  Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08310
symbol: PAP_08310
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein MobB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08385
symbol: PAP_08385
gene_biotype: protein_coding
description:
  CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08390
symbol: PAP_08390
gene_biotype: protein_coding
description:
  Cell division protein DedD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: PAP_08395
symbol: PAP_08395
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08400
symbol: PAP_08400
gene_biotype: protein_coding
description:
  Bifunctional phosphatase/dolichol-phosphate glucosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08420
symbol: pan
gene_biotype: protein_coding
description:
  ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome associati [...]


ensembl_gene_id: PAP_08425
symbol: PAP_08425
gene_biotype: protein_coding
description:
  Transport membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08430
symbol: PAP_08430
gene_biotype: protein_coding
description:
  Tyrosine-protein kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08440
symbol: PAP_08440
gene_biotype: protein_coding
description:
  Biotin synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08445
symbol: PAP_08445
gene_biotype: protein_coding
description:
  Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.


ensembl_gene_id: PAP_08460
symbol: PAP_08460
gene_biotype: protein_coding
description:
  Magnesium-dependent phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08465
symbol: PAP_08465
gene_biotype: protein_coding
description:
  Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08510
symbol: PAP_08510
gene_biotype: protein_coding
description:
  3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08515
symbol: PAP_08515
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the pyruvate kinase family.


ensembl_gene_id: PAP_08520
symbol: PAP_08520
gene_biotype: protein_coding
description:
  Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08535
symbol: PAP_08535
gene_biotype: protein_coding
description:
  FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08540
symbol: PAP_08540
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase subunit A; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08640
symbol: PAP_08640
gene_biotype: protein_coding
description:
  Aldehyde ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08645
symbol: PAP_08645
gene_biotype: protein_coding
description:
  Molybdopterin converting factor, subunit 1; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08685
symbol: PAP_08685
gene_biotype: protein_coding
description:
  Arsenate reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08690
symbol: PAP_08690
gene_biotype: protein_coding
description:
  Arsenic transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08700
symbol: PAP_08700
gene_biotype: protein_coding
description:
  Copper-exporting P-type ATPase A; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08710
symbol: PAP_08710
gene_biotype: protein_coding
description:
  Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08725
symbol: PAP_08725
gene_biotype: protein_coding
description:
  Type 11 methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08745
symbol: PAP_08745
gene_biotype: protein_coding
description:
  Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08750
symbol: PAP_08750
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08755
symbol: PAP_08755
gene_biotype: protein_coding
description:
  Methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08770
symbol: thi4
gene_biotype: protein_coding
description:
  Ribonucleoside-triphosphate reductase; Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur.


ensembl_gene_id: PAP_08795
symbol: PAP_08795
gene_biotype: protein_coding
description:
  Cell division protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the AAA ATPase family.


ensembl_gene_id: PAP_08810
symbol: PAP_08810
gene_biotype: protein_coding
description:
  Chromosome assembly protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08830
symbol: PAP_08830
gene_biotype: protein_coding
description:
  Zinc-transporting ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08875
symbol: PAP_08875
gene_biotype: protein_coding
description:
  Mercury ion binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08890
symbol: PAP_08890
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08900
symbol: thiI-2
gene_biotype: protein_coding
description:
  Thiamin biosynthesis protein thiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.


ensembl_gene_id: PAP_08905
symbol: PAP_08905
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis protein MoeB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08930
symbol: PAP_08930
gene_biotype: protein_coding
description:
  Iron permease FTR1 family; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08935
symbol: PAP_08935
gene_biotype: protein_coding
description:
  Proline dipeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08945
symbol: PAP_08945
gene_biotype: protein_coding
description:
  Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08985
symbol: PAP_08985
gene_biotype: protein_coding
description:
  Potassium transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_08995
symbol: hypA
gene_biotype: protein_coding
description:
  Hydrogenase expression protein HupG; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: PAP_09000
symbol: PAP_09000
gene_biotype: protein_coding
description:
  Mrp/NBP35 family nucleotide-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: PAP_09005
symbol: PAP_09005
gene_biotype: protein_coding
description:
  Hydrogenase maturation protease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09010
symbol: PAP_09010
gene_biotype: protein_coding
description:
  Electron transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09035
symbol: PAP_09035
gene_biotype: protein_coding
description:
  ATPase AAA; Membrane bound Lon protease from Thermococcus kodakarensis shows ATP-dependent protease activity towards folded polypeptides; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase S16 family.


ensembl_gene_id: PAP_09040
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 2 subfamily.


ensembl_gene_id: PAP_09060
symbol: csl4
gene_biotype: protein_coding
description:
  RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.


ensembl_gene_id: PAP_09070
symbol: rpoL
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.


ensembl_gene_id: PAP_09080
symbol: PAP_09080
gene_biotype: protein_coding
description:
  AP endonuclease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09100
symbol: truD
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase D; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.


ensembl_gene_id: PAP_09105
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.


ensembl_gene_id: PAP_09115
symbol: aspC
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp).


ensembl_gene_id: PAP_09140
symbol: PAP_09140
gene_biotype: protein_coding
description:
  FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09155
symbol: tfe
gene_biotype: protein_coding
description:
  Transcription factor; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to [...]


ensembl_gene_id: PAP_09180
symbol: PAP_09180
gene_biotype: protein_coding
description:
  Lipoate--protein ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09195
symbol: mfnA
gene_biotype: protein_coding
description:
  L-tyrosine decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.


ensembl_gene_id: PAP_09225
symbol: PAP_09225
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09280
symbol: PAP_09280
gene_biotype: protein_coding
description:
  S-adenosyl-L-methionine:L-histidine 3-amino-3-carboxypropyltransferase; Catalyzes the first step of diphthamide biosynthesis, i.e. the transfer of the 3-amino-3-carboxypropyl group from S-adenosyl-L- methionine (SAM) to the C2 position of the imidazole ring of the target histidine residue in translation elongation factor 2 (EF-2). Belongs to the DPH1/DPH2 family.


ensembl_gene_id: PAP_09295
symbol: PAP_09295
gene_biotype: protein_coding
description:
  Small mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09315
symbol: PAP_09315
gene_biotype: protein_coding
description:
  Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09365
symbol: speH
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: PAP_09370
symbol: PAP_09370
gene_biotype: protein_coding
description:
  NAD-dependent malic enzyme 4; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09385
symbol: PAP_09385
gene_biotype: protein_coding
description:
  Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09400
symbol: PAP_09400
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the V-ATPase 116 kDa subunit family.


ensembl_gene_id: PAP_09405
symbol: PAP_09405
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09410
symbol: atpE
gene_biotype: protein_coding
description:
  Hypothetical protein; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: PAP_09415
symbol: atpC
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: PAP_09420
symbol: atpF
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: PAP_09425
symbol: atpA
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: PAP_09430
symbol: atpB
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.


ensembl_gene_id: PAP_09435
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: PAP_09440
symbol: PAP_09440
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0216 family.


ensembl_gene_id: PAP_09455
symbol: PAP_09455
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0282 family.


ensembl_gene_id: PAP_09475
symbol: PAP_09475
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09485
symbol: PAP_09485
gene_biotype: protein_coding
description:
  Aromatic ring hydroxylating enzyme; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09495
symbol: bpsA
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the biosynthesis of branched-chain polyamines, which support the growth of thermophiles under high-temperature conditions. Catalyzes the sequential condensation of spermidine with the aminopropyl groups of decarboxylated S-adenosylmethionines to produce N(4)-bis(aminopropyl)spermidine via N(4)-aminopropylspermidine.


ensembl_gene_id: PAP_09500
symbol: pdaD
gene_biotype: protein_coding
description:
  Pyruvoyl-dependent arginine decarboxylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the PdaD family.


ensembl_gene_id: PAP_09505
symbol: speH-2
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: PAP_09510
symbol: speE
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.


ensembl_gene_id: PAP_09515
symbol: PAP_09515
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09525
symbol: PAP_09525
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: PAP_09530
symbol: PAP_09530
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09555
symbol: PAP_09555
gene_biotype: protein_coding
description:
  GlcNAc transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09570
symbol: PAP_09570
gene_biotype: protein_coding
description:
  Alanine glycine permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09580
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: PAP_09645
symbol: PAP_09645
gene_biotype: protein_coding
description:
  Secondary thiamine-phosphate synthase enzyme; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09660
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09665
symbol: pyrI
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Involved in allosteric regulation of aspartate carbamoyltransferase.


ensembl_gene_id: PAP_09690
symbol: PAP_09690
gene_biotype: protein_coding
description:
  Sodium dependent transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.


ensembl_gene_id: PAP_09695
symbol: PAP_09695
gene_biotype: protein_coding
description:
  Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: PAP_09730
symbol: PAP_09730
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase S16 family.


ensembl_gene_id: PAP_09735
symbol: cca
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.


ensembl_gene_id: PAP_09740
symbol: PAP_09740
gene_biotype: protein_coding
description:
  Hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: PAP_09755
symbol: PAP_09755
gene_biotype: protein_coding
description:
  Sugar-catabolism phosphotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09850
symbol: PAP_09850
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09875
symbol: PAP_09875
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09885
symbol: sat
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sulfate adenylyltransferase family.


ensembl_gene_id: PAP_09890
symbol: PAP_09890
gene_biotype: protein_coding
description:
  DHH family protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09895
symbol: PAP_09895
gene_biotype: protein_coding
description:
  Nucleotide pyrophosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09970
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: PAP_09975
symbol: PAP_09975
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate:ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_09980
symbol: kae1
gene_biotype: protein_coding
description:
  Protein kinase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Kae1 likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity.


ensembl_gene_id: PAP_09990
symbol: ppnK
gene_biotype: protein_coding
description:
  Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: PAP_10015
symbol: PAP_10015
gene_biotype: protein_coding
description:
  Carbamate kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the carbamate kinase family.


ensembl_gene_id: PAP_10040
symbol: PAP_10040
gene_biotype: protein_coding
description:
  Apolipoprotein N- acyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_10070
symbol: PAP_10070
gene_biotype: protein_coding
description:
  Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_10085
symbol: PAP_10085
gene_biotype: protein_coding
description:
  Dolichol monophosphate mannose synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_10110
symbol: PAP_10110
gene_biotype: protein_coding
description:
  Asparagine synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_10115
symbol: PAP_10115
gene_biotype: protein_coding
description:
  Nucleotide binding protein, containing PIN domain; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_10120
symbol: eif2g
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2 subunit gamma; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily.


ensembl_gene_id: PAP_10125
symbol: rps6e
gene_biotype: protein_coding
description:
  30S ribosomal protein S6; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the eukaryotic ribosomal protein eS6 family.


ensembl_gene_id: PAP_10130
symbol: fbp
gene_biotype: protein_coding
description:
  Fructose-1 6-bisphosphatase; Catalyzes two subsequent steps in gluconeogenesis: the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3- phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P).


ensembl_gene_id: PAP_10155
symbol: PAP_10155
gene_biotype: protein_coding
description:
  Deoxyribonucleotide triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: PAP_10160
symbol: PAP_10160
gene_biotype: protein_coding
description:
  Adenosine monophosphate-protein transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_10180
symbol: nadE
gene_biotype: protein_coding
description:
  NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.


ensembl_gene_id: PAP_10215
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: PAP_10220
symbol: pyrK
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).


ensembl_gene_id: PAP_10225
symbol: PAP_10225
gene_biotype: protein_coding
description:
  Cofactor synthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_10245
symbol: PAP_10245
gene_biotype: protein_coding
description:
  Phosphate permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: PAP_10255
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: PAP_10260
symbol: secG
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecG; Involved in protein export. The function of the beta subunit is unknown, but it may be involved in stabilization of the trimeric complex.


ensembl_gene_id: PAP_10270
symbol: engB
gene_biotype: protein_coding
description:
  GTP-binding protein EngB; Necessary for normal cell division and for the maintenance of normal septation.


ensembl_gene_id: PAP_10275
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.


