# geneInfo

ensembl_gene_id: Z3561
symbol: yfcD
gene_biotype: protein_coding
description:
  Putative regulator; Residues 1 to 180 of 180 are 100.00 pct identical to residues 1 to 180 of 180 from Escherichia coli K-12 Strain MG1655: B2299.


ensembl_gene_id: Z3562
symbol: yfcE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Shows phosphodiesterase activity; Belongs to the metallophosphoesterase superfamily. YfcE family.


ensembl_gene_id: Z3563
symbol: yfcF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 214 of 214 are 99.06 pct identical to residues 1 to 214 of 214 from Escherichia coli K-12 Strain MG1655: B2301.


ensembl_gene_id: Z3564
symbol: yfcG
gene_biotype: protein_coding
description:
  Putative S-transferase; Residues 1 to 215 of 215 are 99.06 pct identical to residues 1 to 215 of 215 from Escherichia coli K-12 Strain MG1655: B2302; Belongs to the GST superfamily.


ensembl_gene_id: Z3565
symbol: folX
gene_biotype: protein_coding
description:
  D-erythro-7,8-dihydroneopterin tri P epimerase; Catalyzes the epimerization of carbon 2' of the side chain of 7,8-dihydroneopterin triphosphate (H2NTP) to form 7,8-dihydromonapterin triphosphate (H2MTP). Is required for tetrahydromonapterin biosynthesis.


ensembl_gene_id: Z3566
symbol: yfcH
gene_biotype: protein_coding
description:
  Putative sugar nucleotide epimerase; Residues 1 to 297 of 297 are 98.65 pct identical to residues 1 to 297 of 297 from Escherichia coli K-12 Strain MG1655: B2304.


ensembl_gene_id: Z3567
symbol: yfcI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 296 of 296 are 95.60 pct identical to residues 1 to 296 of 296 from Escherichia coli K-12 Strain MG1655: B2305.


ensembl_gene_id: Z3568
symbol: hisP
gene_biotype: protein_coding
description:
  ATP-binding component of histidine transport; Residues 1 to 257 of 257 are 99.22 pct identical to residues 1 to 257 of 257 from Escherichia coli K-12 Strain MG1655: B2306.


ensembl_gene_id: Z3569
symbol: hisM
gene_biotype: protein_coding
description:
  Histidine transport, membrane protein M; Part of the histidine permease ABC transporter. Also part of a lysine/arginine/ornithine transporter. Probably responsible for the translocation of the substrate across the membrane. Required to relay the ATPase-inducing signal from the solute-binding protein to HisP (By similarity).


ensembl_gene_id: Z3570
symbol: hisQ
gene_biotype: protein_coding
description:
  Histidine transport system permease protein; Residues 1 to 228 of 228 are 99.12 pct identical to residues 1 to 228 of 228 from Escherichia coli K-12 Strain MG1655: B2308.


ensembl_gene_id: Z3571
symbol: hisJ
gene_biotype: protein_coding
description:
  Histidine-binding periplasmic protein of high-affinity histidine transport system; Part of the histidine permease ABC transporter. Binds histidine. Interacts with HisQMP and stimulates ATPase activity of HisP, which results in histidine translocation (By similarity).


ensembl_gene_id: Z3572
symbol: argT
gene_biotype: protein_coding
description:
  Lysine-, arginine-, ornithine-binding periplasmic protein; Residues 1 to 260 of 260 are 99.23 pct identical to residues 1 to 260 of 260 from Escherichia coli K-12 Strain MG1655: B2310; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Z3573
symbol: ubiX
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.


ensembl_gene_id: Z3574
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase = PRPP amidotransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: Z3575
symbol: cvpA
gene_biotype: protein_coding
description:
  Membrane protein required for colicin V production; Residues 1 to 162 of 162 are 98.76 pct identical to residues 1 to 162 of 162 from Escherichia coli K-12 Strain MG1655: B2313.


ensembl_gene_id: Z3576
symbol: dedD
gene_biotype: protein_coding
description:
  Putative lipoprotein; Non-essential cell division protein that could be required for efficient cell constriction.


ensembl_gene_id: Z3577
symbol: folC
gene_biotype: protein_coding
description:
  Dihydrofolate:folylpolyglutamate synthetase; Functions in two distinct reactions of the de novo folate biosynthetic pathway. Catalyzes the addition of a glutamate residue to dihydropteroate (7,8-dihydropteroate or H2Pte) to form dihydrofolate (7,8-dihydrofolate monoglutamate or H2Pte-Glu). Also catalyzes successive additions of L-glutamate to tetrahydrofolate or 10- formyltetrahydrofolate or 5,10-methylenetetrahydrofolate, leading to folylpolyglutamate derivatives.


ensembl_gene_id: Z3578
symbol: accD
gene_biotype: protein_coding
description:
  acetylCoA carboxylase, carboxytransferase component, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: Z3579
symbol: dedA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 219 of 219 are 99.54 pct identical to residues 1 to 219 of 219 from Escherichia coli K-12 Strain MG1655: B2317.


ensembl_gene_id: Z3580
symbol: truA
gene_biotype: protein_coding
description:
  Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Z3581
symbol: usg
gene_biotype: protein_coding
description:
  Putative PTS system enzyme II A component; Residues 1 to 337 of 337 are 99.40 pct identical to residues 1 to 337 of 337 from Escherichia coli K-12 Strain MG1655: B2319; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Z3582
symbol: pdxB
gene_biotype: protein_coding
description:
  Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.


ensembl_gene_id: Z3583
symbol: div
gene_biotype: protein_coding
description:
  Cell division protein; Acts as a regulator of flagellar gene expression by modulating the protein level of the anti sigma factor FlgM upon sensing ring completion or hook elongation. Flk could inhibit FlgM secretion by acting as a braking system for the flagellar-associated type III secretion system.


ensembl_gene_id: Z3585
symbol: yfcJ
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 392 of 392 are 98.72 pct identical to residues 1 to 392 of 392 from Escherichia coli K-12 Strain MG1655: B2322.


ensembl_gene_id: Z3586
symbol: fabB
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase I; Residues 1 to 406 of 406 are 99.50 pct identical to residues 1 to 406 of 406 from Escherichia coli K-12 Strain MG1655: B2323; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Z3587
symbol: mnmC
gene_biotype: protein_coding
description:
  Putative peptidase; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.


ensembl_gene_id: Z3588
symbol: yfcL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 92 of 92 are 100.00 pct identical to residues 1 to 92 of 92 from Escherichia coli K-12 Strain MG1655: B2325.


ensembl_gene_id: Z3589
symbol: epmC
gene_biotype: protein_coding
description:
  Putative transporting ATPase; Residues 1 to 182 of 182 are 99.45 pct identical to residues 1 to 182 of 182 from Escherichia coli K-12 Strain MG1655: B2326.


ensembl_gene_id: Z3590
symbol: yfcA
gene_biotype: protein_coding
description:
  Putative structural protein; Residues 1 to 269 of 269 are 100.00 pct identical to residues 1 to 269 of 269 from Escherichia coli K-12 Strain MG1655: B2327.


ensembl_gene_id: Z3591
symbol: mepA
gene_biotype: protein_coding
description:
  Murein DD-endopeptidase, penicillin-insensitive; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. Belongs to the peptidase M74 family.


ensembl_gene_id: Z3592
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: Z3593
symbol: yfcB
gene_biotype: protein_coding
description:
  Putative adenine-specific methylase; Residues 1 to 421 of 421 are 96.43 pct identical to residues 1 to 421 of 421 from Escherichia coli K-12 Strain MG1655: B2330.


ensembl_gene_id: Z3594
symbol: yfcN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 183 of 183 are 96.17 pct identical to residues 1 to 183 of 183 from Escherichia coli K-12 Strain MG1655: B2331; Belongs to the UPF0115 family.


ensembl_gene_id: Z3595
symbol: yfcO
gene_biotype: protein_coding
description:
  Orf; Residues 32 to 280 of 280 are 43.92 pct identical to residues 26 to 278 of 278 from Escherichia coli K-12 Strain MG1655: B2332.


ensembl_gene_id: Z3596
symbol: yfcP
gene_biotype: protein_coding
description:
  Putative minor fimbrial subunit; Residues 1 to 172 of 173 are 56.89 pct identical to residues 5 to 178 of 179 from Escherichia coli K-12 Strain MG1655: B2333.


ensembl_gene_id: Z3597
symbol: yfcQ
gene_biotype: protein_coding
description:
  Putative minor fimbrial subunit; Residues 19 to 156 of 156 are 53.19 pct identical to residues 22 to 162 of 162 from Escherichia coli K-12 Strain MG1655: B2334.


ensembl_gene_id: Z3598
symbol: yfcR
gene_biotype: protein_coding
description:
  Putative minor fimbrial subunit; Residues 32 to 197 of 197 are 47.59 pct identical to residues 6 to 170 of 170 from Escherichia coli K-12 Strain MG1655: B2335.


ensembl_gene_id: Z3599
symbol: yfcS
gene_biotype: protein_coding
description:
  Putative fimbrial chaperone; Residues 1 to 250 of 252 are 85.60 pct identical to residues 1 to 250 of 250 from Escherichia coli K-12 Strain MG1655: B2336.


ensembl_gene_id: Z3600
symbol: yfcU
gene_biotype: protein_coding
description:
  Putative fimbrial usher; Residues 1 to 577 of 879 are 90.48 pct identical to residues 1 to 578 of 578 from Escherichia coli K-12 Strain MG1655: B2338.


ensembl_gene_id: Z3601
symbol: yfcV
gene_biotype: protein_coding
description:
  Putative major fimbrial subunit; Residues 1 to 187 of 187 are 88.77 pct identical to residues 1 to 187 of 187 from Escherichia coli K-12 Strain MG1655: B2339.


ensembl_gene_id: Z3603
symbol: sixA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 161 of 161 are 98.75 pct identical to residues 1 to 161 of 161 from Escherichia coli K-12 Strain MG1655: B2340.


ensembl_gene_id: Z3604
symbol: fadJ
gene_biotype: protein_coding
description:
  Putative enzyme; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Z3605
symbol: fadI
gene_biotype: protein_coding
description:
  Putative acyltransferase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.


ensembl_gene_id: Z3606
symbol: yfcZ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 102 of 102 are 99.01 pct identical to residues 1 to 102 of 102 from Escherichia coli K-12 Strain MG1655: B2343.


ensembl_gene_id: Z3608
symbol: fadL
gene_biotype: protein_coding
description:
  Transport of long-chain fatty acids; Involved in translocation of long-chain fatty acids across the outer membrane. FadL may form a specific channel (By similarity). Belongs to the OmpP1/FadL family.


ensembl_gene_id: Z3609
symbol: yfdF
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 67 to 343 of 343 are 62.41 pct identical to residues 5 to 281 of 352 from Escherichia coli K-12 Strain MG1655: B2345.


ensembl_gene_id: Z3610
symbol: vacJ
gene_biotype: protein_coding
description:
  Lipoprotein precursor; Residues 1 to 251 of 251 are 99.60 pct identical to residues 1 to 251 of 251 from Escherichia coli K-12 Strain MG1655: B2346.


ensembl_gene_id: Z3611
symbol: yfdC
gene_biotype: protein_coding
description:
  Putative transport; Residues 1 to 310 of 310 are 99.03 pct identical to residues 1 to 310 of 310 from Escherichia coli K-12 Strain MG1655: B2347.


ensembl_gene_id: Z3613
symbol: intC
gene_biotype: protein_coding
description:
  Putative prophage integrase; Residues 13 to 397 of 397 are 97.92 pct identical to residues 1 to 385 of 385 from Escherichia coli K-12 Strain MG1655: B2349; Belongs to the 'phage' integrase family.


ensembl_gene_id: Z3614
symbol: Z3614
gene_biotype: protein_coding
description:
  Putative prophage DNA injection protein; Residues 1 to 217 of 378 are 47.70 pct identical to residues 1 to 218 of 471 from GenPept 118 : gi|8439632|gb|AAF75054.1| (AF217253) unknown protein [Bacteriophage P22].


ensembl_gene_id: Z3615
symbol: Z3615
gene_biotype: protein_coding
description:
  Putative prophage DNA injection protein; Residues 20 to 226 of 226 are 66.66 pct identical to residues 24 to 229 of 229 from GenPept 118 : gi|8439631|gb|AAF75053.1| (AF217253) DNA transfer protein [Bacteriophage P22].


ensembl_gene_id: Z3616
symbol: Z3616
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 152 of 155 are 35.52 pct identical to residues 1 to 149 of 155 from GenPept 118 : gi|6118026|gb|AAF03974.1|AF157835_31 (AF157835) P31 [Bacteriophage APSE-1].


ensembl_gene_id: Z3622
symbol: Z3622
gene_biotype: protein_coding
description:
  Putative resolvase; Residues 1 to 204 of 208 are 46.34 pct identical to residues 1 to 205 of 211 from GenPept 118 : gi|5668998|gb|AAD46124.1|AF078924_3 (AF078924) putative Res [Plasmid pM3].


ensembl_gene_id: Z3623
symbol: Z3623
gene_biotype: protein_coding
description:
  Sucrose permease; Residues 1 to 415 of 415 are 99.51 pct identical to residues 1 to 415 of 415 from GenPept 118 : gi|41168|emb|CAA45274.1| (X63740) sucrose permease [Escherichia coli].


ensembl_gene_id: Z3624
symbol: Z3624
gene_biotype: protein_coding
description:
  D-fructokinase; Residues 1 to 292 of 305 are 91.12 pct identical to residues 1 to 291 of 305 from GenPept 118 : gi|608707|emb|CAA57218.1| (X81461) D-fructokinase [Escherichia coli]; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Z3625
symbol: Z3625
gene_biotype: protein_coding
description:
  Sucrose hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: Z3626
symbol: Z3626
gene_biotype: protein_coding
description:
  Sucrose specific transcriptional regulator; Residues 1 to 331 of 331 are 99.39 pct identical to residues 1 to 331 of 331 from GenPept 118 : gi|608709|emb|CAA57220.1| (X81461) sucrose specific repressor [Escherichia coli].


ensembl_gene_id: Z3627
symbol: dsdX
gene_biotype: protein_coding
description:
  D-serine permease; Residues 1 to 72 of 72 are 100.00 pct identical to residues 374 to 445 of 445 from GenPept 118 : gi|1788707|gb|AAC75424.1| (AE000324) transport system permease (serine?) [Escherichia coli].


ensembl_gene_id: Z3628
symbol: dsdA
gene_biotype: protein_coding
description:
  D-serine dehydratase (deaminase); Residues 1 to 442 of 442 are 99.09 pct identical to residues 1 to 442 of 442 from Escherichia coli K-12 Strain MG1655: B2366.


ensembl_gene_id: Z3629
symbol: emrY
gene_biotype: protein_coding
description:
  Multidrug resistance protein Y; Residues 1 to 512 of 512 are 99.21 pct identical to residues 1 to 512 of 512 from Escherichia coli K-12 Strain MG1655: B2367; Belongs to the major facilitator superfamily.


ensembl_gene_id: Z3630
symbol: emrK
gene_biotype: protein_coding
description:
  Multidrug resistance protein K; Residues 1 to 387 of 387 are 99.48 pct identical to residues 1 to 387 of 387 from Escherichia coli K-12 Strain MG1655: B2368.


ensembl_gene_id: Z3631
symbol: evgA
gene_biotype: protein_coding
description:
  Putative positive transcription regulator (sensor EvgS); Member of the two-component regulatory system EvgS/EvgA. Regulates the expression of emrKY operon and yfdX. Seems also to control expression of at least one other multidrug efflux operon (By similarity).


ensembl_gene_id: Z3632
symbol: evgS
gene_biotype: protein_coding
description:
  Putative sensor for regulator EvgA; Member of the two-component regulatory system EvgS/EvgA. Phosphorylates EvgA via a four-step phosphorelay in response to environmental signals (By similarity).


ensembl_gene_id: Z3633
symbol: yfdE
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 308 of 308 are 98.05 pct identical to residues 87 to 394 of 394 from Escherichia coli K-12 Strain MG1655: B2371.


ensembl_gene_id: Z3634
symbol: Z3634
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 75 of 89 are 97.33 pct identical to residues 1 to 75 of 394 from Escherichia coli K-12 Strain MG1655: B2371.


ensembl_gene_id: Z3635
symbol: yfdV
gene_biotype: protein_coding
description:
  Putative receptor protein; Residues 1 to 314 of 314 are 99.68 pct identical to residues 1 to 314 of 314 from Escherichia coli K-12 Strain MG1655: B2372.


ensembl_gene_id: Z3637
symbol: oxc
gene_biotype: protein_coding
description:
  Putative enzyme; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the decarboxylation of oxalyl-CoA to yield carbon dioxide and formyl-CoA (By similarity); Belongs to the TPP enzyme family.


ensembl_gene_id: Z3639
symbol: frc
gene_biotype: protein_coding
description:
  Putative enzyme; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate (By similarity); Belongs to the CoA-transferase III family. Frc subfamily.


ensembl_gene_id: Z3640
symbol: yfdX
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 211 of 211 are 99.52 pct identical to residues 1 to 211 of 211 from Escherichia coli K-12 Strain MG1655: B2375.


ensembl_gene_id: Z3641
symbol: ypdI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 91 of 91 are 93.40 pct identical to residues 1 to 91 of 91 from Escherichia coli K-12 Strain MG1655: B2376.


ensembl_gene_id: Z3642
symbol: yfdY
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 80 of 80 are 97.50 pct identical to residues 1 to 80 of 80 from Escherichia coli K-12 Strain MG1655: B2377.


ensembl_gene_id: Z3643
symbol: ddg
gene_biotype: protein_coding
description:
  Putative heat shock protein; Catalyzes the transfer of palmitoleate from palmitoleoyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (palmitoleoyl)-lipid IV(A); Belongs to the LpxL/LpxM/LpxP family. LpxP subfamily.


ensembl_gene_id: Z3644
symbol: alaC
gene_biotype: protein_coding
description:
  Putative aminotransferase; Residues 1 to 412 of 412 are 99.75 pct identical to residues 1 to 412 of 412 from Escherichia coli K-12 Strain MG1655: B2379.


ensembl_gene_id: Z3645
symbol: ypdA
gene_biotype: protein_coding
description:
  Putative sensor protein; Member of the two-component regulatory system YpdA/YpdB. YpdA activates YpdB by phosphorylation in response to high concentrations of extracellular pyruvate.


ensembl_gene_id: Z3646
symbol: ypdB
gene_biotype: protein_coding
description:
  Putative 2-component transcriptional regulator; Member of the two-component regulatory system YpdA/YpdB. YpdB regulates expression of yhjX by binding to its promoter region.


ensembl_gene_id: Z3647
symbol: ypdC
gene_biotype: protein_coding
description:
  Putative ARAC-type regulatory protein; Residues 1 to 285 of 285 are 99.64 pct identical to residues 1 to 285 of 285 from Escherichia coli K-12 Strain MG1655: B2382.


ensembl_gene_id: Z3648
symbol: fryA
gene_biotype: protein_coding
description:
  Putative PTS system enzyme IIA component, enzyme I; Multifunctional protein that includes general (non sugar- specific) and sugar-specific components of the phosphoenolpyruvate- dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II FryABC PTS system is involved in fructose transport.


ensembl_gene_id: Z3649
symbol: ypdE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 345 of 345 are 98.84 pct identical to residues 1 to 345 of 345 from Escherichia coli K-12 Strain MG1655: B2384.


ensembl_gene_id: Z3651
symbol: ypdF
gene_biotype: protein_coding
description:
  Putative peptidase; Residues 1 to 361 of 361 are 96.12 pct identical to residues 1 to 361 of 361 from Escherichia coli K-12 Strain MG1655: B2385.


ensembl_gene_id: Z3652
symbol: fryC
gene_biotype: protein_coding
description:
  Putative transport protein; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.


ensembl_gene_id: Z3653
symbol: fryB
gene_biotype: protein_coding
description:
  Putative PTS system enzyme IIB component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II FryABC PTS system is involved in fructose transport.


ensembl_gene_id: Z3654
symbol: glk
gene_biotype: protein_coding
description:
  Glucokinase; Not highly important in E.coli as glucose is transported into the cell by the PTS system already as glucose 6-phosphate.


ensembl_gene_id: Z3655
symbol: yfeO
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 418 of 418 are 100.00 pct identical to residues 1 to 418 of 418 from Escherichia coli K-12 Strain MG1655: B2389.


ensembl_gene_id: Z3656
symbol: ypeC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 108 of 108 are 100.00 pct identical to residues 1 to 108 of 108 from Escherichia coli K-12 Strain MG1655: B2390; To E.coli YaaX.


ensembl_gene_id: Z3657
symbol: Z3657
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 77 of 77 are 85.71 pct identical to residues 38 to 114 of 114 from Escherichia coli K-12 Strain MG1655: B2391.


ensembl_gene_id: Z3658
symbol: mntH
gene_biotype: protein_coding
description:
  Putative transport system permease; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.


ensembl_gene_id: Z3659
symbol: nupC
gene_biotype: protein_coding
description:
  Permease of transport system for 3 nucleosides; Residues 1 to 400 of 400 are 99.25 pct identical to residues 1 to 400 of 400 from Escherichia coli K-12 Strain MG1655: B2393; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.


ensembl_gene_id: Z3660
symbol: yfeA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 742 of 742 are 99.59 pct identical to residues 27 to 768 of 768 from Escherichia coli K-12 Strain MG1655: B2395.


ensembl_gene_id: Z3662
symbol: yfeC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 119 of 119 are 100.00 pct identical to residues 1 to 119 of 119 from Escherichia coli K-12 Strain MG1655: B2398.


ensembl_gene_id: Z3663
symbol: yfeD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 130 of 130 are 93.84 pct identical to residues 1 to 130 of 130 from Escherichia coli K-12 Strain MG1655: B2399.


ensembl_gene_id: Z3664
symbol: insQ_1
gene_biotype: protein_coding
description:
  Putative virulence protein; Residues 1 to 402 of 402 are 97.51 pct identical to residues 1 to 402 of 402 from GenPept 118 : gi|1787702|gb|AAC74514.1| (AE000240) putative virulence protein [Escherichia coli].


ensembl_gene_id: Z3665
symbol: gltX
gene_biotype: protein_coding
description:
  Glutamate tRNA synthetase, catalytic subunit; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).


ensembl_gene_id: Z3672
symbol: flxA
gene_biotype: protein_coding
description:
  Orf; Residues 16 to 88 of 113 are 43.24 pct identical to residues 14 to 84 of 110 from GenPept 118 : gi|1787849|gb|AAC74639.1| (AE000253) orf, hypothetical protein [Escherichia coli].


ensembl_gene_id: Z3673
symbol: yfeR_2
gene_biotype: protein_coding
description:
  Putative transcriptional regulator LYSR-type; Residues 1 to 115 of 115 are 98.26 pct identical to residues 194 to 308 of 308 from Escherichia coli K-12 Strain MG1655: B2409.


ensembl_gene_id: Z3674
symbol: yfeR_1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator LYSR-type; Residues 1 to 184 of 184 are 98.91 pct identical to residues 1 to 184 of 308 from Escherichia coli K-12 Strain MG1655: B2409.


ensembl_gene_id: Z3675
symbol: yfeH
gene_biotype: protein_coding
description:
  Putative cytochrome oxidase; Residues 1 to 332 of 332 are 99.69 pct identical to residues 1 to 332 of 332 from Escherichia coli K-12 Strain MG1655: B2410.


ensembl_gene_id: Z3677
symbol: lig
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: Z3678
symbol: zipA
gene_biotype: protein_coding
description:
  Cell division protein involved in FtsZ ring; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.


ensembl_gene_id: Z3679
symbol: cysZ
gene_biotype: protein_coding
description:
  Required for sulfate transport; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family.


ensembl_gene_id: Z3680
symbol: cysK
gene_biotype: protein_coding
description:
  Cysteine synthase A, O-acetylserine sulfhydrolase A; Residues 1 to 323 of 323 are 100.00 pct identical to residues 1 to 323 of 323 from Escherichia coli K-12 Strain MG1655: B2414; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: Z3681
symbol: ptsH
gene_biotype: protein_coding
description:
  PTS system protein HPr; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein HPr by enzyme I. Phospho-HPr then transfers it to the PTS EIIA domain.


ensembl_gene_id: Z3682
symbol: ptsI
gene_biotype: protein_coding
description:
  PEP-protein phosphotransferase system enzyme I; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: Z3683
symbol: crr
gene_biotype: protein_coding
description:
  PTS system, glucose-specific IIA component; Residues 1 to 169 of 169 are 99.40 pct identical to residues 1 to 169 of 169 from Escherichia coli K-12 Strain MG1655: B2417.


ensembl_gene_id: Z3684
symbol: pdxK
gene_biotype: protein_coding
description:
  Pyridoxal/pyridoxine/pyridoxamine kinase; B6-vitamer kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxine (PN), pyridoxal (PL), and pyridoxamine (PM), forming their respective 5'-phosphorylated esters, i.e. PNP, PLP and PMP.


ensembl_gene_id: Z3685
symbol: yfeK
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 107 of 110 are 98.13 pct identical to residues 1 to 107 of 124 from Escherichia coli K-12 Strain MG1655: B2419.


ensembl_gene_id: Z3686
symbol: cysM
gene_biotype: protein_coding
description:
  Cysteine synthase B, O-acetylserine sulfhydrolase B; Residues 1 to 303 of 303 are 98.34 pct identical to residues 1 to 303 of 303 from Escherichia coli K-12 Strain MG1655: B2421; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: Z3687
symbol: cysA
gene_biotype: protein_coding
description:
  ATP-binding component of sulfate permease A protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Z3688
symbol: cysW
gene_biotype: protein_coding
description:
  Sulfate/thiosulfate transport system permease W protein; Residues 1 to 149 of 149 are 99.32 pct identical to residues 1 to 149 of 149 from Escherichia coli K-12 Strain MG1655: B2423.


ensembl_gene_id: Z3689
symbol: cysU
gene_biotype: protein_coding
description:
  Sulfate, thiosulfate transport system permease T protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Z3690
symbol: cysP
gene_biotype: protein_coding
description:
  Thiosulfate binding protein; Residues 1 to 338 of 338 are 99.70 pct identical to residues 1 to 338 of 338 from Escherichia coli K-12 Strain MG1655: B2425.


ensembl_gene_id: Z3691
symbol: ucpA
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 285 of 285 are 99.64 pct identical to residues 1 to 285 of 285 from Escherichia coli K-12 Strain MG1655: B2426; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Z3692
symbol: yfeT
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Represses the expression of the murPQ operon involved in the uptake and degradation of N-acetylmuramic acid (MurNAc). Binds to two adjacent inverted repeats within the operator region. MurNAc 6- phosphate, the substrate of MurQ, is the specific inducer that weakens binding of MurR to the operator.


ensembl_gene_id: Z3693
symbol: yfeU
gene_biotype: protein_coding
description:
  Putative regulator; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the GCKR-like family. MurNAc-6-P etherase subfamily.


ensembl_gene_id: Z3694
symbol: murP
gene_biotype: protein_coding
description:
  Putative PTS enzyme II; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This system is involved in N-acetylmuramic acid (MurNAc) transport, yielding cytoplasmic MurNAc-6-P. Is also able to take up anhydro-N-acetylmuramic acid (anhMurNAc), but cannot phosphorylate the carbon 6, probably because of the 1,6-anhydro ring.


ensembl_gene_id: Z3695
symbol: yfeW
gene_biotype: protein_coding
description:
  Putative beta-lactamase; Residues 1 to 430 of 430 are 98.13 pct identical to residues 34 to 463 of 463 from Escherichia coli K-12 Strain MG1655: B2430; Belongs to the peptidase S12 family. YfeW subfamily.


ensembl_gene_id: Z3696
symbol: yfeX
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Has both general peroxidase activity and dye-decolorizing activity. Can catalyze the oxidation of 2,2'-azino-bis(3- ethylbenzothiazoline-6-sulphonic acid) (ABTS), and the phenolic compounds guaiacol and catechol. Also decolorizes the anthraquinone dye reactive blue 19 (RB19).


ensembl_gene_id: Z3697
symbol: yfeY
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 191 of 191 are 98.95 pct identical to residues 1 to 191 of 191 from Escherichia coli K-12 Strain MG1655: B2432.


ensembl_gene_id: Z3698
symbol: yfeZ
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 151 of 151 are 99.33 pct identical to residues 1 to 151 of 151 from Escherichia coli K-12 Strain MG1655: B2433.


ensembl_gene_id: Z3699
symbol: ypeA
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 178 of 178 are 99.43 pct identical to residues 1 to 178 of 178 from Escherichia coli K-12 Strain MG1655: B2434; Belongs to the acetyltransferase family. YpeA subfamily.


ensembl_gene_id: Z3700
symbol: amiA
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-l-alanine amidase I; Residues 1 to 289 of 289 are 99.30 pct identical to residues 1 to 289 of 289 from Escherichia coli K-12 Strain MG1655: B2435.


ensembl_gene_id: Z3701
symbol: hemF
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: Z3702
symbol: yfeG
gene_biotype: protein_coding
description:
  Putative ARAC-type regulatory protein; Residues 1 to 350 of 350 are 99.14 pct identical to residues 1 to 350 of 350 from Escherichia coli K-12 Strain MG1655: B2437.


ensembl_gene_id: Z3703
symbol: eutK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 168 of 168 are 98.80 pct identical to residues 1 to 168 of 168 from Escherichia coli K-12 Strain MG1655: B2438.


ensembl_gene_id: Z3704
symbol: eutL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 219 of 219 are 99.08 pct identical to residues 1 to 219 of 219 from Escherichia coli K-12 Strain MG1655: B2439.


ensembl_gene_id: Z3705
symbol: eutC
gene_biotype: protein_coding
description:
  Ethanolamine ammonia-lyase, light chain; Residues 1 to 295 of 295 are 98.64 pct identical to residues 1 to 295 of 295 from Escherichia coli K-12 Strain MG1655: B2440; Belongs to the EutC family.


ensembl_gene_id: Z3706
symbol: eutB
gene_biotype: protein_coding
description:
  Ethanolamine ammonia-lyase, heavy chain; Residues 1 to 453 of 453 are 100.00 pct identical to residues 15 to 467 of 467 from Escherichia coli K-12 Strain MG1655: B2441.


ensembl_gene_id: Z3707
symbol: eutA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 467 of 467 are 98.50 pct identical to residues 1 to 467 of 467 from Escherichia coli K-12 Strain MG1655: B2451.


ensembl_gene_id: Z3708
symbol: eutH
gene_biotype: protein_coding
description:
  Ethanolamine utilization; Residues 1 to 408 of 408 are 99.50 pct identical to residues 1 to 408 of 408 from Escherichia coli K-12 Strain MG1655: B2452.


ensembl_gene_id: Z3709
symbol: eutG
gene_biotype: protein_coding
description:
  Ethanolamine utilization; Residues 1 to 404 of 404 are 99.25 pct identical to residues 1 to 404 of 404 from Escherichia coli K-12 Strain MG1655: B2453.


ensembl_gene_id: Z3710
symbol: eutJ
gene_biotype: protein_coding
description:
  Ethanolamine utilization; Residues 1 to 278 of 278 are 99.28 pct identical to residues 1 to 278 of 278 from Escherichia coli K-12 Strain MG1655: B2454.


ensembl_gene_id: Z3711
symbol: eutE
gene_biotype: protein_coding
description:
  Ethanolamine utilization; Residues 1 to 467 of 467 are 99.57 pct identical to residues 1 to 467 of 467 from Escherichia coli K-12 Strain MG1655: B2455.


ensembl_gene_id: Z3712
symbol: cchB
gene_biotype: protein_coding
description:
  Detox protein; Residues 1 to 95 of 95 are 98.94 pct identical to residues 1 to 95 of 95 from Escherichia coli K-12 Strain MG1655: B2456.


ensembl_gene_id: Z3713
symbol: cchA
gene_biotype: protein_coding
description:
  Detox protein; Residues 1 to 111 of 111 are 100.00 pct identical to residues 1 to 111 of 111 from Escherichia coli K-12 Strain MG1655: B2457.


ensembl_gene_id: Z3714
symbol: eutI
gene_biotype: protein_coding
description:
  Ethanolamine utilization; Residues 1 to 338 of 338 are 99.70 pct identical to residues 1 to 338 of 338 from Escherichia coli K-12 Strain MG1655: B2458.


ensembl_gene_id: Z3715
symbol: eutT
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 243 of 243 are 90.26 pct identical to residues 1 to 267 of 267 from Escherichia coli K-12 Strain MG1655: B2459.


ensembl_gene_id: Z3716
symbol: eutQ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 233 of 233 are 98.71 pct identical to residues 1 to 233 of 233 from Escherichia coli K-12 Strain MG1655: B2460.


ensembl_gene_id: Z3717
symbol: eutP
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 159 of 159 are 98.11 pct identical to residues 1 to 159 of 159 from Escherichia coli K-12 Strain MG1655: B2461; Belongs to the EutP/PduV family.


ensembl_gene_id: Z3718
symbol: eutS
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 135 of 135 are 100.00 pct identical to residues 1 to 135 of 135 from Escherichia coli K-12 Strain MG1655: B2462.


ensembl_gene_id: Z3719
symbol: maeB
gene_biotype: protein_coding
description:
  Putative multimodular enzyme; Residues 1 to 759 of 759 are 99.86 pct identical to residues 1 to 759 of 759 from Escherichia coli K-12 Strain MG1655: B2463.


ensembl_gene_id: Z3720
symbol: talA
gene_biotype: protein_coding
description:
  Transaldolase A; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.


ensembl_gene_id: Z3721
symbol: tktB
gene_biotype: protein_coding
description:
  Transketolase 2 isozyme; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: Z3722
symbol: ypfG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 347 of 347 are 98.84 pct identical to residues 1 to 347 of 347 from Escherichia coli K-12 Strain MG1655: B2466.


ensembl_gene_id: Z3723
symbol: yffH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Nucleoside diphosphate sugar hydrolase that hydrolyzes GDP- mannose as its preferred substrate, yielding GMP and mannose-1- phosphate.


ensembl_gene_id: Z3724
symbol: yffG
gene_biotype: protein_coding
description:
  Putative oxidoreductase, Fe-S subunit; Residues 1 to 659 of 659 are 99.39 pct identical to residues 1 to 659 of 659 from Escherichia coli K-12 Strain MG1655: B2468.


ensembl_gene_id: Z3726
symbol: narQ
gene_biotype: protein_coding
description:
  Sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL); Residues 1 to 566 of 566 are 99.29 pct identical to residues 1 to 566 of 566 from Escherichia coli K-12 Strain MG1655: B2469.


ensembl_gene_id: Z3727
symbol: acrD
gene_biotype: protein_coding
description:
  Sensitivity to acriflavine, integral membrane protein, possible efflux pump; Residues 1 to 1037 of 1037 are 99.90 pct identical to residues 1 to 1037 of 1037 from Escherichia coli K-12 Strain MG1655: B2470.


ensembl_gene_id: Z3729
symbol: yffB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 118 of 118 are 95.76 pct identical to residues 1 to 118 of 118 from Escherichia coli K-12 Strain MG1655: B2471; Belongs to the ArsC family.


ensembl_gene_id: Z3730
symbol: dapE
gene_biotype: protein_coding
description:
  N-succinyl-diaminopimelate deacylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: Z3731
symbol: ypfN
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 66 of 66 are 100.00 pct identical to residues 1 to 66 of 66 from GenPept 118 : gi|1799901|dbj|BAA16351.1| (D90876) similar to [PIR Accession Number D42959] [Escherichia coli].


ensembl_gene_id: Z3732
symbol: ypfH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 240 of 240 are 99.16 pct identical to residues 1 to 240 of 240 from Escherichia coli K-12 Strain MG1655: B2473.


ensembl_gene_id: Z3733
symbol: ypfI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).


ensembl_gene_id: Z3734
symbol: ypfJ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 287 of 287 are 100.00 pct identical to residues 1 to 287 of 287 from Escherichia coli K-12 Strain MG1655: B2475.


ensembl_gene_id: Z3735
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase; Residues 1 to 237 of 237 are 100.00 pct identical to residues 1 to 237 of 237 from Escherichia coli K-12 Strain MG1655: B2476.


ensembl_gene_id: Z3736
symbol: nlpB
gene_biotype: protein_coding
description:
  Lipoprotein-34; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: Z3737
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Z3738
symbol: gcvR
gene_biotype: protein_coding
description:
  Transcriptional regulation of gcv operon; Residues 1 to 212 of 212 are 100.00 pct identical to residues 1 to 212 of 212 from Escherichia coli K-12 Strain MG1655: B2479.


ensembl_gene_id: Z3739
symbol: bcp
gene_biotype: protein_coding
description:
  Bacterioferritin comigratory protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events; Belongs to the peroxiredoxin family. BCP/PrxQ subfamily.


ensembl_gene_id: Z3741
symbol: hyfA
gene_biotype: protein_coding
description:
  Hydrogenase 4 Fe-S subunit; Residues 1 to 218 of 218 are 97.70 pct identical to residues 1 to 218 of 218 from Escherichia coli K-12 Strain MG1655: B2481.


ensembl_gene_id: Z3742
symbol: hyfB
gene_biotype: protein_coding
description:
  Hydrogenase 4 membrane subunit; Residues 1 to 672 of 672 are 98.95 pct identical to residues 1 to 672 of 672 from Escherichia coli K-12 Strain MG1655: B2482.


ensembl_gene_id: Z3743
symbol: hyfC
gene_biotype: protein_coding
description:
  Hydrogenase 4 membrane subunit; Residues 1 to 322 of 322 are 98.75 pct identical to residues 1 to 322 of 322 from Escherichia coli K-12 Strain MG1655: B2483.


ensembl_gene_id: Z3744
symbol: hyfD
gene_biotype: protein_coding
description:
  Hydrogenase 4 membrane subunit; Residues 1 to 479 of 479 are 99.58 pct identical to residues 1 to 479 of 479 from Escherichia coli K-12 Strain MG1655: B2484.


ensembl_gene_id: Z3745
symbol: hyfE
gene_biotype: protein_coding
description:
  Hydrogenase 4 membrane subunit; Residues 1 to 216 of 216 are 100.00 pct identical to residues 1 to 216 of 216 from Escherichia coli K-12 Strain MG1655: B2485.


ensembl_gene_id: Z3746
symbol: hyfF
gene_biotype: protein_coding
description:
  Hydrogenase 4 membrane subunit; Residues 1 to 526 of 526 are 98.09 pct identical to residues 1 to 526 of 526 from Escherichia coli K-12 Strain MG1655: B2486.


ensembl_gene_id: Z3747
symbol: hyfG
gene_biotype: protein_coding
description:
  Hydrogenase 4 subunit; Residues 1 to 571 of 571 are 96.84 pct identical to residues 1 to 555 of 555 from Escherichia coli K-12 Strain MG1655: B2487.


ensembl_gene_id: Z3748
symbol: hyfH
gene_biotype: protein_coding
description:
  Hydrogenase 4 Fe-S subunit; Residues 1 to 181 of 181 are 97.79 pct identical to residues 1 to 181 of 181 from Escherichia coli K-12 Strain MG1655: B2488.


ensembl_gene_id: Z3749
symbol: hyfI
gene_biotype: protein_coding
description:
  Hydrogenase 4 Fe-S subunit; Residues 1 to 252 of 252 are 99.20 pct identical to residues 1 to 252 of 252 from Escherichia coli K-12 Strain MG1655: B2489.


ensembl_gene_id: Z3750
symbol: hyfJ
gene_biotype: protein_coding
description:
  Putative protein processing element; Residues 1 to 158 of 158 are 98.73 pct identical to residues 1 to 158 of 158 from Escherichia coli K-12 Strain MG1655: B2490.


ensembl_gene_id: Z3751
symbol: hyfR
gene_biotype: protein_coding
description:
  Putative 2-component regulator, interaction with sigma 54; Residues 8 to 658 of 679 are 98.92 pct identical to residues 1 to 651 of 663 from Escherichia coli K-12 Strain MG1655: B2491.


ensembl_gene_id: Z3753
symbol: focB
gene_biotype: protein_coding
description:
  Probable formate transporter (formate channel 2); Residues 1 to 281 of 282 are 98.93 pct identical to residues 1 to 281 of 282 from Escherichia coli K-12 Strain MG1655: B2492.


ensembl_gene_id: Z3755
symbol: perM
gene_biotype: protein_coding
description:
  Putative permease; Residues 1 to 353 of 353 are 100.00 pct identical to residues 1 to 353 of 353 from Escherichia coli K-12 Strain MG1655: B2493.


ensembl_gene_id: Z3757
symbol: bepA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.


ensembl_gene_id: Z3758
symbol: yfgD
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 119 of 119 are 99.15 pct identical to residues 1 to 119 of 119 from Escherichia coli K-12 Strain MG1655: B2495.


ensembl_gene_id: Z3759
symbol: hda
gene_biotype: protein_coding
description:
  Putative DNA replication factor; Mediates the interaction of DNA replication initiator protein DnaA with DNA polymerase subunit beta sliding clamp (dnaN). Stimulates hydrolysis of ATP-DnaA to ADP-DnaA, rendering DnaA inactive for reinitiation, a process called regulatory inhibition of DnaA or RIDA (By similarity); Belongs to the DnaA family. HdA subfamily.


ensembl_gene_id: Z3760
symbol: uraA
gene_biotype: protein_coding
description:
  Uracil transport; Transport of uracil in the cell; Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily.


ensembl_gene_id: Z3761
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: Z3762
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole synthetase = AIR synthetase; Residues 1 to 345 of 345 are 99.13 pct identical to residues 1 to 345 of 345 from Escherichia coli K-12 Strain MG1655: B2499; Belongs to the AIR synthase family.


ensembl_gene_id: Z3763
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase 1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: Z3764
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP); Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: Z3765
symbol: ppx
gene_biotype: protein_coding
description:
  Exopolyphosphatase; Degradation of inorganic polyphosphates (polyP). Releases orthophosphate processively from the ends of the polyP chain.


ensembl_gene_id: Z3766
symbol: yfgF
gene_biotype: protein_coding
description:
  Putative cytochrome C-type biogenesis protein; Residues 1 to 747 of 747 are 99.33 pct identical to residues 1 to 747 of 747 from Escherichia coli K-12 Strain MG1655: B2503.


ensembl_gene_id: Z3768
symbol: yfgG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 63 of 63 are 100.00 pct identical to residues 1 to 63 of 63 from Escherichia coli K-12 Strain MG1655: B2504.


ensembl_gene_id: Z3769
symbol: yfgH
gene_biotype: protein_coding
description:
  Putative outer membrane lipoprotein; Residues 1 to 172 of 172 are 100.00 pct identical to residues 1 to 172 of 172 from Escherichia coli K-12 Strain MG1655: B2505.


ensembl_gene_id: Z3770
symbol: yfgI
gene_biotype: protein_coding
description:
  Putative membrane protein; Residues 1 to 179 of 179 are 99.44 pct identical to residues 1 to 179 of 179 from Escherichia coli K-12 Strain MG1655: B2506.


ensembl_gene_id: Z3772
symbol: guaB
gene_biotype: protein_coding
description:
  IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: Z3773
symbol: xseA
gene_biotype: protein_coding
description:
  Exonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: Z3774
symbol: der
gene_biotype: protein_coding
description:
  Putative GTP-binding factor; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Z3775
symbol: bamB
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: Z3776
symbol: yfgM
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 206 of 206 are 99.02 pct identical to residues 1 to 206 of 206 from Escherichia coli K-12 Strain MG1655: B2513.


ensembl_gene_id: Z3777
symbol: hisS
gene_biotype: protein_coding
description:
  Histidine tRNA synthetase; Residues 1 to 424 of 424 are 100.00 pct identical to residues 1 to 424 of 424 from Escherichia coli K-12 Strain MG1655: B2514.


ensembl_gene_id: Z3778
symbol: gcpE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Z3779
symbol: yfgA
gene_biotype: protein_coding
description:
  Putative membrane protein; Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis.


ensembl_gene_id: Z3780
symbol: yfgB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Z3781
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: Z3783
symbol: ynfH_2
gene_biotype: protein_coding
description:
  Putative dimethyl sulfoxide reductase subunit C; Residues 2 to 272 of 273 are 25.26 pct identical to residues 6 to 276 of 286 from GenPept 118 : gi|5002126|gb|AAD37317.1|AF135170_8 (AF135170) dimethyl sulfoxide reductase subunit C [Yersinia pestis].


ensembl_gene_id: Z3784
symbol: dmsB-2
gene_biotype: protein_coding
description:
  Putative dimethyl sulfoxide reductase subunit B; Residues 4 to 134 of 145 are 61.83 pct identical to residues 57 to 186 of 205 from GenPept 118 : gi|1787122|gb|AAC73981.1| (AE000191) anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli].


ensembl_gene_id: Z3785
symbol: ynfF_4
gene_biotype: protein_coding
description:
  Putative dimethyl sulfoxide reductase subunit A; Residues 25 to 792 of 793 are 43.59 pct identical to residues 3 to 784 of 785 from GenPept 118 : gi|1787121|gb|AAC73980.1| (AE000191) anaerobic dimethyl sulfoxide reductase subunit A [Escherichia coli]; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Z3786
symbol: pbpC
gene_biotype: protein_coding
description:
  Putative peptidoglycan enzyme; Residues 1 to 727 of 727 are 97.93 pct identical to residues 44 to 770 of 770 from Escherichia coli K-12 Strain MG1655: B2519.


ensembl_gene_id: Z3788
symbol: sseA
gene_biotype: protein_coding
description:
  Putative thiosulfate sulfurtransferase; Transfers a sulfur ion to cyanide or to other thiol compounds. Also has weak rhodanese activity. Its participation in detoxification of cyanide may be small. May be involved in the enhancement of serine sensitivity.


ensembl_gene_id: Z3789
symbol: sseB
gene_biotype: protein_coding
description:
  Enhanced serine sensitivity; Residues 51 to 269 of 269 are 99.08 pct identical to residues 43 to 261 of 261 from Escherichia coli K-12 Strain MG1655: B2522.


ensembl_gene_id: Z3792
symbol: fdx
gene_biotype: protein_coding
description:
  [2FE-2S] ferredoxin, electron carrer protein; Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Although the function of this ferredoxin is unknown it is probable that it has a role as a cellular electron transfer protein. Involved in the in vivo assembly of the Fe-S clusters in a wide variety of iron-sulfur proteins (By similarity). Belongs to the adrenodoxin/putidaredoxin family.


ensembl_gene_id: Z3793
symbol: hscA
gene_biotype: protein_coding
description:
  Heat shock protein, chaperone, member of Hsp70 protein family; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Involved in the maturation of IscU (By similarity).


ensembl_gene_id: Z3794
symbol: yfhE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA (By similarity); Belongs to the HscB family.


ensembl_gene_id: Z3795
symbol: yfhF
gene_biotype: protein_coding
description:
  Putative regulator; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system TrxA/TrxB (By similarity).


ensembl_gene_id: Z3796
symbol: iscU
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; A scaffold on which IscS assembles Fe-S clusters. Subsequently gives the nascent cluster to other proteins. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters (Probable).


ensembl_gene_id: Z3797
symbol: yfhO
gene_biotype: protein_coding
description:
  Putative aminotransferase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis (biotin, thiamine, molybdopterin). Catalyzes the removal of elemental sulfur and selenium atoms from cysteine and selenocysteine to produce alanine, then delivers the sulfur to an acceptor protein such as CyaY, IscU, IscX, MoaD/MoeB, ThiI, or TusA. Transfers sulfur to acceptor proteins via a transpersulfidation reaction; the flexibility of the persulfide sulfur-carrying Cys-328 allows it to reach different partners docked on [...]


ensembl_gene_id: Z3798
symbol: iscR
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins.


ensembl_gene_id: Z3799
symbol: trmJ
gene_biotype: protein_coding
description:
  Putative ATP synthase beta subunit; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: Z3802
symbol: yhfR-2
gene_biotype: protein_coding
description:
  Putative enzyme (3.4.-); Residues 1 to 293 of 293 are 98.97 pct identical to residues 1 to 293 of 293 from Escherichia coli K-12 Strain MG1655: B2534.


ensembl_gene_id: Z3804
symbol: csiE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 433 of 433 are 100.00 pct identical to residues 1 to 433 of 433 from Escherichia coli K-12 Strain MG1655: B2535.


ensembl_gene_id: Z3807
symbol: hcaT
gene_biotype: protein_coding
description:
  MFS (major facilitator superfamily) transporter; Residues 1 to 379 of 379 are 99.73 pct identical to residues 1 to 379 of 379 from Escherichia coli K-12 Strain MG1655: B2536.


ensembl_gene_id: Z3808
symbol: hcaR
gene_biotype: protein_coding
description:
  Transcriptional activator of hca cluster; Residues 1 to 296 of 296 are 99.66 pct identical to residues 1 to 296 of 296 from Escherichia coli K-12 Strain MG1655: B2537; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Z3809
symbol: hcaA1
gene_biotype: protein_coding
description:
  Large terminal subunit of phenylpropionate dioxygenase; Part of the multicomponent 3-phenylpropionate dioxygenase. Converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3- phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid- dihydrodiol (CI-dihydrodiol), respectively (By similarity).


ensembl_gene_id: Z3810
symbol: hcaA2
gene_biotype: protein_coding
description:
  Small terminal subunit of phenylpropionate dioxygenase; Part of the multicomponent 3-phenylpropionate dioxygenase. Converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3- phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid- dihydrodiol (CI-dihydrodiol), respectively.


ensembl_gene_id: Z3811
symbol: hcaC
gene_biotype: protein_coding
description:
  Ferredoxin subunit of phenylpropionate dioxygenase; Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid- dihydrodiol (CI-dihydrodiol), respectively. This protein seems to be a 2Fe-2S ferredoxin (By similarity).


ensembl_gene_id: Z3813
symbol: hcaB
gene_biotype: protein_coding
description:
  2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Converts 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid-dihydrodiol (CI-dihydrodiol) into 3-(2,3- dihydroxylphenyl)propanoic acid (DHPP) and 2,3-dihydroxicinnamic acid (DHCI), respectively; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Z3814
symbol: hcaD
gene_biotype: protein_coding
description:
  Ferredoxin reductase subunit of phenylpropionate dioxygenase; Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid- dihydrodiol (CI-dihydrodiol), respectively.


ensembl_gene_id: Z3815
symbol: yphA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 155 of 155 are 98.70 pct identical to residues 10 to 164 of 164 from Escherichia coli K-12 Strain MG1655: B2543.


ensembl_gene_id: Z3816
symbol: yphB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 290 of 290 are 98.96 pct identical to residues 1 to 290 of 290 from Escherichia coli K-12 Strain MG1655: B2544.


ensembl_gene_id: Z3817
symbol: yphC_2
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 277 of 277 are 99.27 pct identical to residues 88 to 364 of 364 from Escherichia coli K-12 Strain MG1655: B2545.


ensembl_gene_id: Z3818
symbol: yphC_1
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 74 of 74 are 98.64 pct identical to residues 1 to 74 of 364 from Escherichia coli K-12 Strain MG1655: B2545.


ensembl_gene_id: Z3819
symbol: yphD
gene_biotype: protein_coding
description:
  Putative transport system permease protein; Residues 1 to 332 of 332 are 99.09 pct identical to residues 1 to 332 of 332 from Escherichia coli K-12 Strain MG1655: B2546; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Z3821
symbol: yphE
gene_biotype: protein_coding
description:
  Putative ATP-binding component of a transport system; Residues 1 to 503 of 503 are 99.00 pct identical to residues 1 to 503 of 503 from Escherichia coli K-12 Strain MG1655: B2547.


ensembl_gene_id: Z3823
symbol: yphF
gene_biotype: protein_coding
description:
  Putative LACI-type transcriptional regulator; Residues 1 to 327 of 327 are 99.08 pct identical to residues 1 to 327 of 327 from Escherichia coli K-12 Strain MG1655: B2548.


ensembl_gene_id: Z3825
symbol: yphG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 1124 of 1124 are 98.04 pct identical to residues 1 to 1124 of 1124 from Escherichia coli K-12 Strain MG1655: B2549.


ensembl_gene_id: Z3826
symbol: yphH
gene_biotype: protein_coding
description:
  Putative NAGC-like transcriptional regulator; Residues 1 to 399 of 399 are 98.99 pct identical to residues 1 to 399 of 399 from Escherichia coli K-12 Strain MG1655: B2550.


ensembl_gene_id: Z3827
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Z3828
symbol: hmpA
gene_biotype: protein_coding
description:
  Dihydropteridine reductase, ferrisiderophore reductase activity; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.


ensembl_gene_id: Z3829
symbol: glnB
gene_biotype: protein_coding
description:
  Regulatory protein P-II for glutamine synthetase; P-II indirectly controls the transcription of the glutamine synthetase gene (GlnA). P-II prevents NR-II-catalyzed conversion of NR- I to NR-I-phosphate, the transcriptional activator of GlnA. When P-II is uridylylated to P-II-UMP, these events are reversed. When the ratio of Gln to 2-ketoglutarate decreases, P-II is uridylylated to P-II-UMP, which causes the deadenylation of glutamine synthetase by GlnE, so activating the enzyme (By similarity).


ensembl_gene_id: Z3830
symbol: qseF
gene_biotype: protein_coding
description:
  Quorum sensing regulator F; Member of the two-component regulatory system QseF/QseE involved in the regulation of virulence and metabolism in EHEC. Required for pedestal formation in host epithelial cells during infection. Regulates various metabolic and virulence genes, many iron- utilization genes and some two-component systems such as RcsB/RcsC and PhoP/PhoQ. Activates, indirectly, transcription of EspF(U) to induce pedestal formation.


ensembl_gene_id: Z3831
symbol: qseG
gene_biotype: protein_coding
description:
  Quorum sensing regulator G; Involved in the regulation of virulence and metabolism in EHEC. Required for pedestal formation in host epithelial cells during infection. Necessary for translocation of effector molecules into host epithelial cells, but is not involved in structural assembly of the type III secretion system (TTSS).


ensembl_gene_id: Z3833
symbol: qseE
gene_biotype: protein_coding
description:
  Quorum sensing regulator E; Member of the two-component regulatory system QseF/QseE involved in the regulation of virulence and metabolism in EHEC. Required for pedestal formation in host epithelial cells during infection. Autophosphorylates in response to epinephrine, sulfate or phosphate and then probably transfers its phosphate group to QseF.


ensembl_gene_id: Z3835
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformyl-glycineamide synthetase = FGAM synthetase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: Z3838
symbol: yfhD
gene_biotype: protein_coding
description:
  Putative periplasmic binding transport protein; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.


ensembl_gene_id: Z3839
symbol: yfhC
gene_biotype: protein_coding
description:
  Putative deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Z3840
symbol: yfhB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 190 of 190 are 99.47 pct identical to residues 1 to 190 of 190 from Escherichia coli K-12 Strain MG1655: B2560.


ensembl_gene_id: Z3841
symbol: yfhH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 306 of 306 are 100.00 pct identical to residues 1 to 306 of 306 from Escherichia coli K-12 Strain MG1655: B2561.


ensembl_gene_id: Z3842
symbol: yfhL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 86 of 86 are 98.83 pct identical to residues 1 to 86 of 86 from Escherichia coli K-12 Strain MG1655: B2562.


ensembl_gene_id: Z3844
symbol: acpS
gene_biotype: protein_coding
description:
  CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to the 'Ser-36' of acyl-carrier-protein.


ensembl_gene_id: Z3845
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxine biosynthesis; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: Z3846
symbol: recO
gene_biotype: protein_coding
description:
  Protein interacts with RecR and possibly RecF proteins; Involved in DNA repair and RecF pathway recombination. Belongs to the RecO family.


ensembl_gene_id: Z3847
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: Z3848
symbol: rnc
gene_biotype: protein_coding
description:
  RNase III, ds RNA; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: Z3850
symbol: lepB
gene_biotype: protein_coding
description:
  Leader peptidase (signal peptidase I); Residues 1 to 324 of 324 are 99.69 pct identical to residues 1 to 324 of 324 from Escherichia coli K-12 Strain MG1655: B2568; Belongs to the peptidase S26 family.


ensembl_gene_id: Z3851
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding elongation factor, may be inner membrane protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Z3852
symbol: rseC
gene_biotype: protein_coding
description:
  sigma-E factor, negative regulatory protein; Residues 1 to 159 of 159 are 99.37 pct identical to residues 1 to 159 of 159 from Escherichia coli K-12 Strain MG1655: B2570.


ensembl_gene_id: Z3853
symbol: rseB
gene_biotype: protein_coding
description:
  Regulates activity of sigma-E factor; Negatively modulates the activity of sigma-E (RpoE) by stabilizing RseA under non-stress conditions. Although not essential for association of sigma-E with Rsea it increases their affinity 2- to 3-fold. When bound to RseA it prevents proteolysis by DegS, which is probably relieved by lipopolysaccharide binding (LPS) (By similarity). Belongs to the RseB family.


ensembl_gene_id: Z3854
symbol: rseA
gene_biotype: protein_coding
description:
  sigma-E factor, negative regulatory protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic  [...]


ensembl_gene_id: Z3855
symbol: rpoE
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase (RNAP) to specific initiation sites and are then released. Extracytoplasmic function (ECF) sigma-E controls the envelope stress response, responding to periplasmic protein stress, increased levels of periplasmic lipopolysaccharide (LPS) as well as heat shock and oxidative stress; it controls protein processing in the extracytoplasmic compartment (By similarity).


ensembl_gene_id: Z3856
symbol: nadB
gene_biotype: protein_coding
description:
  Quinolinate synthetase, B protein; Catalyzes the oxidation of L-aspartate to iminoaspartate; Belongs to the FAD-dependent oxidoreductase 2 family. NadB subfamily.


ensembl_gene_id: Z3857
symbol: yfiC
gene_biotype: protein_coding
description:
  Putative enzyme; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).


ensembl_gene_id: Z3859
symbol: srmB
gene_biotype: protein_coding
description:
  ATP-dependent RNA helicase; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily.


ensembl_gene_id: Z3860
symbol: yfiE
gene_biotype: protein_coding
description:
  Putative transcriptional regulator LYSR-type; Residues 1 to 308 of 308 are 96.75 pct identical to residues 1 to 308 of 308 from Escherichia coli K-12 Strain MG1655: B2577; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Z3861
symbol: yfiK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Exporter of O-acetylserine (OAS) and cysteine; Belongs to the Rht family.


ensembl_gene_id: Z3862
symbol: yfiD
gene_biotype: protein_coding
description:
  Putative formate acetyltransferase; Acts as a radical domain for damaged PFL and possibly other radical proteins.


ensembl_gene_id: Z3864
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA-glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: Z3865
symbol: yfiF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 345 of 345 are 99.42 pct identical to residues 1 to 345 of 345 from Escherichia coli K-12 Strain MG1655: B2581; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Z3867
symbol: trxC
gene_biotype: protein_coding
description:
  Putative thioredoxin-like protein; Efficient electron donor for the essential enzyme ribonucleotide reductase. Is also able to reduce the interchain disulfide bridges of insulin (By similarity); Belongs to the thioredoxin family.


ensembl_gene_id: Z3868
symbol: yfiP
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 240 of 240 are 99.58 pct identical to residues 1 to 240 of 240 from Escherichia coli K-12 Strain MG1655: B2583.


ensembl_gene_id: Z3869
symbol: yfiQ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 886 of 886 are 99.09 pct identical to residues 1 to 886 of 886 from Escherichia coli K-12 Strain MG1655: B2584.


ensembl_gene_id: Z3870
symbol: pssA
gene_biotype: protein_coding
description:
  Phosphatidylserine synthase; Residues 1 to 452 of 452 are 100.00 pct identical to residues 1 to 452 of 452 from Escherichia coli K-12 Strain MG1655: B2585.


ensembl_gene_id: Z3871
symbol: yfiM
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 90 of 90 are 98.88 pct identical to residues 1 to 90 of 90 from Escherichia coli K-12 Strain MG1655: B2586.


ensembl_gene_id: Z3872
symbol: kgtP
gene_biotype: protein_coding
description:
  Alpha-ketoglutarate permease; Residues 1 to 432 of 432 are 99.30 pct identical to residues 1 to 432 of 432 from Escherichia coli K-12 Strain MG1655: B2587.


ensembl_gene_id: Z3886
symbol: clpB
gene_biotype: protein_coding
description:
  Heat shock protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB family.


ensembl_gene_id: Z3887
symbol: yfiH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 243 of 243 are 97.53 pct identical to residues 1 to 243 of 243 from Escherichia coli K-12 Strain MG1655: B2593; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: Z3888
symbol: sfhB
gene_biotype: protein_coding
description:
  Suppressor of ftsH mutation; Responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Z3889
symbol: bamD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamA, the core component of the assembly machinery.


ensembl_gene_id: Z3890
symbol: yfiA
gene_biotype: protein_coding
description:
  Putative yhbH sigma 54 modulator; During stationary phase, prevents 70S dimer formation, probably in order to regulate translation efficiency during transition between the exponential and the stationary phases. In addition, during environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored, is quickly released from the ribosome (By similarity).


ensembl_gene_id: Z3891
symbol: pheA
gene_biotype: protein_coding
description:
  Chorismate mutase-P and prephenate dehydratase; Catalyzes the Claisen rearrangement of chorismate to prephenate and the decarboxylation/dehydration of prephenate to phenylpyruvate.


ensembl_gene_id: Z3892
symbol: tyrA
gene_biotype: protein_coding
description:
  Chorismate mutase-T and prephenate dehydrogenase; Residues 1 to 373 of 373 are 99.46 pct identical to residues 1 to 373 of 373 from Escherichia coli K-12 Strain MG1655: B2600.


ensembl_gene_id: Z3893
symbol: aroF
gene_biotype: protein_coding
description:
  3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tyrosine repressible); Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: Z3895
symbol: yfiL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 134 of 134 are 99.25 pct identical to residues 1 to 134 of 134 from Escherichia coli K-12 Strain MG1655: B2602.


ensembl_gene_id: Z3897
symbol: yfiR
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Repressor of the cell division arrest function of DgcN. Prevents DgcN relocation to the midcell.


ensembl_gene_id: Z3898
symbol: yfiN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 408 of 408 are 99.01 pct identical to residues 1 to 408 of 408 from Escherichia coli K-12 Strain MG1655: B2604.


ensembl_gene_id: Z3899
symbol: yfiB
gene_biotype: protein_coding
description:
  Putative outer membrane protein; Residues 1 to 160 of 160 are 98.75 pct identical to residues 1 to 160 of 160 from Escherichia coli K-12 Strain MG1655: B2605.


ensembl_gene_id: Z3900
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Z3901
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Z3902
symbol: yfjA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Z3903
symbol: rpsP
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S16; In addition to being a ribosomal protein, S16 also has a cation-dependent endonuclease activity.


ensembl_gene_id: Z3904
symbol: ffh
gene_biotype: protein_coding
description:
  GTP-binding export factor binds to signal sequence, GTP and RNA; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex  [...]


ensembl_gene_id: Z3905
symbol: ypjD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 288 of 288 are 100.00 pct identical to residues 1 to 288 of 288 from Escherichia coli K-12 Strain MG1655: B2611.


ensembl_gene_id: Z3906
symbol: yfjD
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 227 of 227 are 99.55 pct identical to residues 1 to 227 of 227 from Escherichia coli K-12 Strain MG1655: B2613.


ensembl_gene_id: Z3907
symbol: grpE
gene_biotype: protein_coding
description:
  Phage lambda replication; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...]


ensembl_gene_id: Z3908
symbol: yfjB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Z3909
symbol: recN
gene_biotype: protein_coding
description:
  Protein used in recombination and DNA repair; May be involved in recombinational repair of damaged DNA.


ensembl_gene_id: Z3910
symbol: smpA
gene_biotype: protein_coding
description:
  Small membrane protein A; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: Z3911
symbol: yfjF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 102 of 102 are 98.03 pct identical to residues 1 to 102 of 102 from Escherichia coli K-12 Strain MG1655: B2618; Belongs to the UPF0125 (RnfH) family.


ensembl_gene_id: Z3912
symbol: ratA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 158 of 158 are 99.36 pct identical to residues 1 to 158 of 158 from Escherichia coli K-12 Strain MG1655: B2619.


ensembl_gene_id: Z3913
symbol: smpB
gene_biotype: protein_coding
description:
  Small protein B; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tran [...]


ensembl_gene_id: Z3916
symbol: Z3916
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 80 of 82 are 40.00 pct identical to residues 1 to 76 of 79 from GenPept 118 : gi|5738236|gb|AAD50308.1|AF175466_2 (AF175466) DNA damage-inducible protein DinI [Serratia marcescens].


ensembl_gene_id: Z3918
symbol: espM2
gene_biotype: protein_coding
description:
  Putative chaperone protein; Residues 1 to 195 of 196 are 85.64 pct identical to residues 1 to 195 of 196 from GenPept 118 : gi|4126789|dbj|BAA36747.1| (AB016764) bfpT-regulated chaperone-like protein [Escherichia coli].


ensembl_gene_id: Z3919
symbol: nleG8-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 216 of 216 are 99.53 pct identical to residues 1 to 216 of 216 from GenPept 118 : gi|4126790|dbj|BAA36748.1| (AB016764) ORF2 [Escherichia coli].


ensembl_gene_id: Z3920
symbol: espW
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 352 of 352 are 98.29 pct identical to residues 1 to 352 of 352 from GenPept 118 : gi|4126791|dbj|BAA36749.1| (AB016764) ORF3 [Escherichia coli].


ensembl_gene_id: Z3921
symbol: Z3921
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 20 to 159 of 159 are 99.28 pct identical to residues 1 to 140 of 140 from GenPept 118 : gi|4126792|dbj|BAA36750.1| (AB016764) ORF4 [Escherichia coli].


ensembl_gene_id: Z3922
symbol: Z3922
gene_biotype: protein_coding
description:
  Putative transposase; Residues 1 to 108 of 108 are 100.00 pct identical to residues 1 to 108 of 108 from GenPept 118 : gi|3822180|gb|AAC70134.1| (AF074613) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: Z3923
symbol: Z3923
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 28 of 28 are 100.00 pct identical to residues 2 to 29 of 296 from GenPept 118 : gi|3822179|gb|AAC70133.1| (AF074613) transposase [Escherichia coli O157:H7].


ensembl_gene_id: Z3924
symbol: Z3924
gene_biotype: protein_coding
description:
  Partial putative transposase; Residues 1 to 71 of 72 are 98.59 pct identical to residues 82 to 152 of 296 from GenPept 118 : gi|3822179|gb|AAC70133.1| (AF074613) transposase [Escherichia coli O157:H7].


ensembl_gene_id: Z3925
symbol: Z3925
gene_biotype: protein_coding
description:
  Partial putative transposase; Residues 1 to 136 of 136 are 99.26 pct identical to residues 161 to 296 of 296 from GenPept 118 : gi|3822179|gb|AAC70133.1| (AF074613) transposase [Escherichia coli O157:H7].


ensembl_gene_id: Z3926
symbol: Z3926
gene_biotype: protein_coding
description:
  Unknown protein encoded by prophage CP-933Y; Residues 7 to 154 of 157 are 35.71 pct identical to residues 488 to 640 of 645 from GenPept 118 : gi|4585419|gb|AAD25447.1|AF125520_42 (AF125520) hypothetical protein [Bacteriophage 933W].


ensembl_gene_id: Z3927
symbol: Z3927
gene_biotype: protein_coding
description:
  Unknown protein encoded by prophage CP-933Y; Residues 1 to 381 of 390 are 65.90 pct identical to residues 1 to 395 of 636 from GenPept 118 : gi|6759965|gb|AAF28123.1|AF153317_19 (AF153317) YjhS [Shigella dysenteriae].


ensembl_gene_id: Z3931
symbol: Z3931
gene_biotype: protein_coding
description:
  Unknown protein encoded by prophage CP-933Y; Residues 21 to 248 of 252 are 29.61 pct identical to residues 8 to 236 of 246 from GenPept 118 : gi|7592819|dbj|BAA94406.1| (AB041266) orf14 [Actinobacillus actinomycetemcomitans].


ensembl_gene_id: Z3932
symbol: Z3932
gene_biotype: protein_coding
description:
  Putative antiterminator of prophage CP-933Y; Residues 1 to 207 of 207 are 97.58 pct identical to residues 1 to 207 of 207 from GenPept 118 : gi|215161|gb|AAA96595.1| (J02459) Q (late gene regulator;207) [bacteriophage lambda].


ensembl_gene_id: Z3933
symbol: pphA-2
gene_biotype: protein_coding
description:
  Unknown protein encoded by prophage CP-933Y; Residues 1 to 221 of 221 are 95.02 pct identical to residues 1 to 221 of 221 from GenPept 118 : gi|215160|gb|AAA96594.1| (J02459) Nin 221 (pept unknown;221) [bacteriophage lambda].


ensembl_gene_id: Z3934
symbol: Z3934
gene_biotype: protein_coding
description:
  Unknown protein encoded by prophage CP-933Y; Residues 1 to 66 of 66 are 92.42 pct identical to residues 139 to 204 of 204 from GenPept 118 : gi|4539482|emb|CAB39991.1| (AJ237660) NinG protein [Bacteriophage 21].


ensembl_gene_id: Z3935
symbol: Z3935
gene_biotype: protein_coding
description:
  Unknown protein encoded by prophage CP-933Y; Residues 82 to 187 of 201 are 30.84 pct identical to residues 13 to 118 of 121 from GenPept 118 : gi|15583|emb|CAA24404.1| (V01146) gene 3.8 [Bacteriophage T7].


ensembl_gene_id: Z3936
symbol: tra8_3
gene_biotype: protein_coding
description:
  IS30 transposase; Residues 1 to 247 of 251 are 100.00 pct identical to residues 1 to 247 of 383 from GenPept 118 : gi|7800288|gb|AAF69884.1|AF250878_45 (AF250878) IS30 transposase [Salmonella typhi].


ensembl_gene_id: Z3945
symbol: Z3945
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 172 to 336 of 347 are 28.57 pct identical to residues 125 to 264 of 311 from GenPept 118 : gi|2621988|gb|AAB85391.1| (AE000865) integrase-recombinase protein [Methanobacterium thermoautotrophicum].


ensembl_gene_id: Z3946
symbol: Z3946
gene_biotype: protein_coding
description:
  Putative DNA binding protein; Residues 7 to 56 of 68 are 41.99 pct identical to residues 26 to 75 of 109 from GenPept 118 : gi|1196729|gb|AAA92518.1| (M11913) unknown protein [Bacteriophage P4].


ensembl_gene_id: Z3948
symbol: ypjA
gene_biotype: protein_coding
description:
  Putative ATP-binding component of a transport system; Residues 1 to 1528 of 1528 are 97.44 pct identical to residues 44 to 1569 of 1569 from Escherichia coli K-12 Strain MG1655: B2647.


ensembl_gene_id: Z3949
symbol: Z3949
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 47 of 47 are 100.00 pct identical to residues 1 to 47 of 47 from Escherichia coli K-12 Strain MG1655: B2648.


ensembl_gene_id: Z3950
symbol: ypjB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 195 to 449 of 449 are 89.41 pct identical to residues 1 to 255 of 263 from Escherichia coli K-12 Strain MG1655: B2649.


ensembl_gene_id: Z3954
symbol: ygaQ
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 118 to 266 of 412 are 90.60 pct identical to residues 1 to 149 of 164 from Escherichia coli K-12 Strain MG1655: B2655.


ensembl_gene_id: Z3955
symbol: Z3955
gene_biotype: protein_coding
description:
  Putative enzyme; Residues 1 to 198 of 335 are 97.47 pct identical to residues 13 to 210 of 210 from Escherichia coli K-12 Strain MG1655: B2657.


ensembl_gene_id: Z3956
symbol: glaH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Acts as an alpha-ketoglutarate-dependent dioxygenase catalyzing hydroxylation of glutarate (GA) to L-2-hydroxyglutarate (L2HG). Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate.


ensembl_gene_id: Z3958
symbol: ygaF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the dehydrogenation of L-2-hydroxyglutarate (L2HG) to alpha-ketoglutarate and couples to the respiratory chain by feeding electrons from the reaction into the membrane quinone pool. Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. Reaction=(S)-2-hydroxyglutarate + a quinone = 2-oxoglutarate + a quinol; Xref=Rhea:RHEA:58664, ChEBI:CHEBI:16782, ChEBI:CHEBI:16810, ChEBI:CHEBI:24646, ChEBI:CHEBI:132124; PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:58665; Belongs to the L2HGDH family.


ensembl_gene_id: Z3959
symbol: gabD
gene_biotype: protein_coding
description:
  Succinate-semialdehyde dehydrogenase, NADP-dependent activity; Residues 1 to 482 of 482 are 98.96 pct identical to residues 1 to 482 of 482 from Escherichia coli K-12 Strain MG1655: B2661; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Z3960
symbol: gabT
gene_biotype: protein_coding
description:
  4-aminobutyrate aminotransferase activity; Residues 1 to 426 of 426 are 98.59 pct identical to residues 1 to 426 of 426 from Escherichia coli K-12 Strain MG1655: B2662; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Z3961
symbol: gabP
gene_biotype: protein_coding
description:
  Transport permease protein of gamma-aminobutyrate; Residues 1 to 466 of 466 are 99.57 pct identical to residues 1 to 466 of 466 from Escherichia coli K-12 Strain MG1655: B2663.


ensembl_gene_id: Z3963
symbol: ygaE
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Residues 1 to 226 of 226 are 100.00 pct identical to residues 1 to 226 of 226 from Escherichia coli K-12 Strain MG1655: B2664.


ensembl_gene_id: Z3964
symbol: ygaU
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 149 of 149 are 99.32 pct identical to residues 1 to 149 of 149 from Escherichia coli K-12 Strain MG1655: B2665.


ensembl_gene_id: Z3965
symbol: yqaE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 52 of 52 are 100.00 pct identical to residues 1 to 52 of 52 from Escherichia coli K-12 Strain MG1655: B2666.


ensembl_gene_id: Z3966
symbol: ygaV
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 99 of 99 are 97.97 pct identical to residues 1 to 99 of 99 from Escherichia coli K-12 Strain MG1655: B2667.


ensembl_gene_id: Z3967
symbol: ygaP
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 172 of 172 are 98.25 pct identical to residues 1 to 172 of 174 from Escherichia coli K-12 Strain MG1655: B2668.


ensembl_gene_id: Z3968
symbol: stpA
gene_biotype: protein_coding
description:
  DNA-binding protein; A DNA-binding protein that acts in a fashion similar to H-NS, repressing gene transcription. A subset of H-NS/StpA-regulated genes require auxillary proteins for repression; these auxillary proteins (Hha and other similar proteins) may also modulate oligomerization of the H-NS/StpA complex (By similarity).


ensembl_gene_id: Z3971
symbol: ygaC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 114 of 114 are 100.00 pct identical to residues 1 to 114 of 114 from Escherichia coli K-12 Strain MG1655: B2671.


ensembl_gene_id: Z3972
symbol: ygaM
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 113 of 113 are 100.00 pct identical to residues 1 to 113 of 113 from Escherichia coli K-12 Strain MG1655: B2672; Belongs to the ElaB/YgaM/YqjD family.


ensembl_gene_id: Z3973
symbol: Z3973
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 442 of 444 are 34.12 pct identical to residues 10 to 471 of 493 from GenPept 118 : gi|468764|emb|CAA55271.1| (X78503) mocR [Sinorhizobium meliloti].


ensembl_gene_id: Z3974
symbol: Z3974
gene_biotype: protein_coding
description:
  Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Z3977
symbol: nrdE
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase 2, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: Z3978
symbol: nrdF
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase 2, beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: Z3979
symbol: proV
gene_biotype: protein_coding
description:
  ATP-binding component of transport system for glycine, betaine and proline; Residues 1 to 400 of 400 are 99.50 pct identical to residues 1 to 400 of 400 from Escherichia coli K-12 Strain MG1655: B2677.


ensembl_gene_id: Z3980
symbol: proW
gene_biotype: protein_coding
description:
  High-affinity transport system for glycine betaine and proline; Residues 1 to 354 of 354 are 99.71 pct identical to residues 1 to 354 of 354 from Escherichia coli K-12 Strain MG1655: B2678.


ensembl_gene_id: Z3981
symbol: proX
gene_biotype: protein_coding
description:
  High-affinity transport system for glycine betaine and proline; Part of the ProU ABC transporter complex involved in glycine betaine and proline betaine uptake. Binds glycine betaine and proline betaine with high affinity.


ensembl_gene_id: Z3982
symbol: ygaY
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 90 to 394 of 394 are 99.34 pct identical to residues 1 to 305 of 305 from Escherichia coli K-12 Strain MG1655: B2681.


ensembl_gene_id: Z3983
symbol: ygaZ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 245 of 245 are 99.59 pct identical to residues 1 to 245 of 245 from Escherichia coli K-12 Strain MG1655: B2682.


ensembl_gene_id: Z3984
symbol: ygaH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 111 of 111 are 98.19 pct identical to residues 1 to 111 of 111 from Escherichia coli K-12 Strain MG1655: B2683.


ensembl_gene_id: Z3985
symbol: emrR
gene_biotype: protein_coding
description:
  Regulator of plasmid mcrB operon (microcin B17 synthesis); Negative regulator of the multidrug operon emrAB.


ensembl_gene_id: Z3986
symbol: emrA
gene_biotype: protein_coding
description:
  Multidrug resistance secretion protein; Residues 1 to 390 of 390 are 99.48 pct identical to residues 1 to 390 of 390 from Escherichia coli K-12 Strain MG1655: B2685.


ensembl_gene_id: Z3987
symbol: emrB
gene_biotype: protein_coding
description:
  Multidrug resistance; Part of the tripartite efflux system EmrAB-TolC, which confers resistance to antibiotics.


ensembl_gene_id: Z3988
symbol: ygaG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.


ensembl_gene_id: Z3989
symbol: gshA
gene_biotype: protein_coding
description:
  Gamma-glutamate-cysteine ligase; Residues 1 to 518 of 518 are 99.80 pct identical to residues 1 to 518 of 518 from Escherichia coli K-12 Strain MG1655: B2688; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.


ensembl_gene_id: Z3990
symbol: yqaA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 142 of 142 are 99.29 pct identical to residues 1 to 142 of 142 from Escherichia coli K-12 Strain MG1655: B2689.


ensembl_gene_id: Z3991
symbol: yqaB
gene_biotype: protein_coding
description:
  Putative phosphatase; Residues 1 to 188 of 188 are 98.40 pct identical to residues 1 to 188 of 188 from Escherichia coli K-12 Strain MG1655: B2690.


ensembl_gene_id: Z3998
symbol: csrA
gene_biotype: protein_coding
description:
  Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).


ensembl_gene_id: Z3999
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Z4001
symbol: oraA
gene_biotype: protein_coding
description:
  Regulator, OraA protein; Modulates RecA activity through direct physical interaction. Can inhibit both RecA recombinase and coprotease activities. May have a regulatory role during the SOS response. Inhibits DNA strand exchange in vitro (By similarity); Belongs to the RecX family.


ensembl_gene_id: Z4002
symbol: recA
gene_biotype: protein_coding
description:
  DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Z4003
symbol: ygaD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 165 of 165 are 99.39 pct identical to residues 1 to 165 of 165 from Escherichia coli K-12 Strain MG1655: B2700; Belongs to the CinA family.


ensembl_gene_id: Z4004
symbol: mltB
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase B; Residues 1 to 361 of 361 are 99.16 pct identical to residues 1 to 361 of 361 from Escherichia coli K-12 Strain MG1655: B2701.


ensembl_gene_id: Z4005
symbol: srlA_1
gene_biotype: protein_coding
description:
  PTS system, glucitol/sorbitol-specific IIC component, one of two; Residues 1 to 128 of 131 are 96.87 pct identical to residues 1 to 128 of 187 from Escherichia coli K-12 Strain MG1655: B2702.


ensembl_gene_id: Z4006
symbol: srlA_2
gene_biotype: protein_coding
description:
  PTS system, glucitol/sorbitol-specific IIC component, one of two; Residues 1 to 44 of 44 are 97.72 pct identical to residues 144 to 187 of 187 from Escherichia coli K-12 Strain MG1655: B2702.


ensembl_gene_id: Z4007
symbol: srlE_1
gene_biotype: protein_coding
description:
  PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components; Residues 1 to 31 of 68 are 93.54 pct identical to residues 1 to 31 of 319 from Escherichia coli K-12 Strain MG1655: B2703.


ensembl_gene_id: Z4009
symbol: srlE_2
gene_biotype: protein_coding
description:
  PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components; Residues 1 to 216 of 216 are 98.14 pct identical to residues 104 to 319 of 319 from Escherichia coli K-12 Strain MG1655: B2703.


ensembl_gene_id: Z4011
symbol: srlB
gene_biotype: protein_coding
description:
  PTS system, glucitol/sorbitol-specific enzyme IIA component; Residues 1 to 123 of 123 are 98.37 pct identical to residues 1 to 123 of 123 from Escherichia coli K-12 Strain MG1655: B2704.


ensembl_gene_id: Z4012
symbol: srlD
gene_biotype: protein_coding
description:
  Glucitol (sorbitol)-6-phosphate dehydrogenase; Residues 1 to 259 of 259 are 98.84 pct identical to residues 1 to 259 of 259 from Escherichia coli K-12 Strain MG1655: B2705; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Z4013
symbol: gutM
gene_biotype: protein_coding
description:
  Glucitol operon activator; Residues 1 to 119 of 119 are 99.15 pct identical to residues 1 to 119 of 119 from Escherichia coli K-12 Strain MG1655: B2706.


ensembl_gene_id: Z4014
symbol: srlR
gene_biotype: protein_coding
description:
  Regulator for gut (srl), glucitol operon; Residues 10 to 229 of 229 are 98.63 pct identical to residues 38 to 257 of 257 from Escherichia coli K-12 Strain MG1655: B2707.


ensembl_gene_id: Z4015
symbol: gutQ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the reversible aldol-ketol isomerization between D- ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P). It is also able of sustaining the biosynthetic pathway of 3-deoxy-D-manno- octulosonate (KDO), a unique 8-carbon sugar component of lipopolysaccharides (LPSs) (By similarity).


ensembl_gene_id: Z4017
symbol: ygaA
gene_biotype: protein_coding
description:
  Putative 2-component transcriptional regulator; Required for the expression of anaerobic nitric oxide (NO) reductase, acts as a transcriptional activator for at least the norVW operon. Activation also requires sigma-54.


ensembl_gene_id: Z4018
symbol: norV
gene_biotype: protein_coding
description:
  Putative flavodoxin; Anaerobic nitric oxide reductase; uses NADH to detoxify nitric oxide (NO), protecting several 4Fe-4S NO-sensitive enzymes. Has at least 2 reductase partners, only one of which (NorW, flavorubredoxin reductase) has been identified. NO probably binds to the di-iron center. Also able to function as an aerobic oxygen reductase (By similarity).


ensembl_gene_id: Z4019
symbol: ygbD
gene_biotype: protein_coding
description:
  Putative oxidoreductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase.


ensembl_gene_id: Z4020
symbol: hypF
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.


ensembl_gene_id: Z4021
symbol: hydN
gene_biotype: protein_coding
description:
  Involved in electron transport from formate to hydrogen, Fe-S centers; Electron transport from formate to hydrogen.


ensembl_gene_id: Z4022
symbol: ascG
gene_biotype: protein_coding
description:
  ascBF operon repressor; Residues 1 to 337 of 337 are 98.51 pct identical to residues 1 to 337 of 337 from Escherichia coli K-12 Strain MG1655: B2714.


ensembl_gene_id: Z4023
symbol: ascF
gene_biotype: protein_coding
description:
  PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides; Residues 1 to 485 of 485 are 97.93 pct identical to residues 1 to 485 of 485 from Escherichia coli K-12 Strain MG1655: B2715.


ensembl_gene_id: Z4024
symbol: ascB
gene_biotype: protein_coding
description:
  6-phospho-beta-glucosidase; Residues 1 to 474 of 474 are 97.89 pct identical to residues 1 to 474 of 474 from Escherichia coli K-12 Strain MG1655: B2716; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: Z4025
symbol: hycI
gene_biotype: protein_coding
description:
  Protease involved in processing C-terminal end of the large subunit of hydrogenase 3; Protease involved in the C-terminal processing of HycE, the large subunit of hydrogenase 3.


ensembl_gene_id: Z4026
symbol: hycH
gene_biotype: protein_coding
description:
  Processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex); Seems to be required for the conversion of a precursor form of the large subunit of hydrogenlyase (HycE) into a mature form.


ensembl_gene_id: Z4027
symbol: hycG
gene_biotype: protein_coding
description:
  Hydrogenase activity; Residues 1 to 255 of 255 are 99.60 pct identical to residues 1 to 255 of 255 from Escherichia coli K-12 Strain MG1655: B2719.


ensembl_gene_id: Z4028
symbol: hycF
gene_biotype: protein_coding
description:
  Probable iron-sulfur protein of hydrogenase 3 (part of FHL complex); Residues 1 to 180 of 180 are 99.44 pct identical to residues 1 to 180 of 180 from Escherichia coli K-12 Strain MG1655: B2720.


ensembl_gene_id: Z4029
symbol: hycE
gene_biotype: protein_coding
description:
  Large subunit of hydrogenase 3 (part of FHL complex); Residues 1 to 569 of 569 are 99.82 pct identical to residues 1 to 569 of 569 from Escherichia coli K-12 Strain MG1655: B2721.


ensembl_gene_id: Z4030
symbol: hycD
gene_biotype: protein_coding
description:
  Membrane-spanning protein of hydrogenase 3 (part of FHL complex); Residues 1 to 307 of 307 are 99.67 pct identical to residues 1 to 307 of 307 from Escherichia coli K-12 Strain MG1655: B2722.


ensembl_gene_id: Z4031
symbol: hycC
gene_biotype: protein_coding
description:
  Membrane-spanning protein of hydrogenase 3 (part of FHL complex); Residues 1 to 608 of 608 are 99.17 pct identical to residues 1 to 608 of 608 from Escherichia coli K-12 Strain MG1655: B2723.


ensembl_gene_id: Z4032
symbol: hycB
gene_biotype: protein_coding
description:
  4Fe-4S dicluster domain-containing protein; Residues 1 to 203 of 203 are 99.50 pct identical to residues 1 to 203 of 203 from Escherichia coli K-12 Strain MG1655: B2724.


ensembl_gene_id: Z4033
symbol: hycA
gene_biotype: protein_coding
description:
  Transcriptional repression of hyc and hyp operons; Regulatory protein for the formate hydrogenlyase system. Could act by directly interacting with FhlA or by preventing the binding of FhlA to the upstream activatory sequence (By similarity).


ensembl_gene_id: Z4035
symbol: hypA
gene_biotype: protein_coding
description:
  Pleiotrophic effects on 3 hydrogenase isozymes; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: Z4036
symbol: hypB
gene_biotype: protein_coding
description:
  Guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3; Residues 1 to 290 of 290 are 99.31 pct identical to residues 1 to 290 of 290 from Escherichia coli K-12 Strain MG1655: B2727.


ensembl_gene_id: Z4037
symbol: hypC
gene_biotype: protein_coding
description:
  Pleiotrophic effects on 3 hydrogenase isozymes; Involved in the maturation of [NiFe] hydrogenases. Involved in the biosynthesis of the Fe(CN)(2)CO cofactor. HypC delivers iron- bound CO(2) to HypD where reduction to CO probably occurs. In complex with HypD, accepts the cyanide ligand generated by HypF and HypE, and also coordinates the carbon monoxide ligand. Belongs to the HupF/HypC family.


ensembl_gene_id: Z4038
symbol: hypD
gene_biotype: protein_coding
description:
  Pleiotrophic effects on 3 hydrogenase isozymes; Residues 1 to 373 of 373 are 99.19 pct identical to residues 1 to 373 of 373 from Escherichia coli K-12 Strain MG1655: B2729; Belongs to the HypD family.


ensembl_gene_id: Z4039
symbol: hypE
gene_biotype: protein_coding
description:
  Plays structural role in maturation of all 3 hydrogenases; Residues 1 to 322 of 322 are 98.13 pct identical to residues 1 to 322 of 322 from Escherichia coli K-12 Strain MG1655: B2730.


ensembl_gene_id: Z4040
symbol: fhlA
gene_biotype: protein_coding
description:
  Formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons; Residues 1 to 692 of 692 are 99.56 pct identical to residues 1 to 692 of 692 from Escherichia coli K-12 Strain MG1655: B2731.


ensembl_gene_id: Z4041
symbol: ygbA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 117 of 117 are 98.29 pct identical to residues 1 to 117 of 117 from Escherichia coli K-12 Strain MG1655: B2732.


ensembl_gene_id: Z4043
symbol: mutS
gene_biotype: protein_coding
description:
  Methyl-directed mismatch repair; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: Z4044
symbol: pphB
gene_biotype: protein_coding
description:
  Protein phosphatase 2; Residues 1 to 218 of 218 are 94.95 pct identical to residues 1 to 218 of 218 from Escherichia coli K-12 Strain MG1655: B2734.


ensembl_gene_id: Z4045
symbol: ecdD
gene_biotype: protein_coding
description:
  Orf; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives under anaerobic conditions, however the precise biochemical function in metabolism of phenolic acid is unknown.


ensembl_gene_id: Z4046
symbol: edcC
gene_biotype: protein_coding
description:
  Orf; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives under both aerobic and anaerobic conditions. Phenolic acid decarboxylase that catalyzes the reversible decarboxylation of 4-hydroxybenzoate and vanillate. Belongs to the UbiD family. YclC subfamily.


ensembl_gene_id: Z4047
symbol: ecdB
gene_biotype: protein_coding
description:
  Putative decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives under both aerobic and anaerobic conditions. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase (By similarity); Belongs to the UbiX/PAD1 family. YclB subfamily.


ensembl_gene_id: Z4048
symbol: hosA
gene_biotype: protein_coding
description:
  Putative regulator; Involved in the temperature-dependent positive control of flagellum-driven swimming motility and cellular aggregation. Regulates fliC expression by directly interacting with fliC promoter (By similarity).


ensembl_gene_id: Z4049
symbol: rpoS
gene_biotype: protein_coding
description:
  RNA polymerase, sigma S (sigma38) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.


ensembl_gene_id: Z4050
symbol: nlpD
gene_biotype: protein_coding
description:
  Lipoprotein; Residues 1 to 379 of 379 are 99.73 pct identical to residues 1 to 379 of 379 from Escherichia coli K-12 Strain MG1655: B2742.


ensembl_gene_id: Z4051
symbol: pcm
gene_biotype: protein_coding
description:
  L-isoaspartate protein carboxylmethyltransferase type II; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins (By similarity). Belongs to the methyltransferase superfamily. L- isoaspartyl/D-aspartyl protein methyltransferase family.


ensembl_gene_id: Z4052
symbol: surE
gene_biotype: protein_coding
description:
  Survival protein; Nucleotidase with a broad substrate specificity as it can dephosphorylate various ribo- and deoxyribonucleoside 5'-monophosphates and ribonucleoside 3'-monophosphates with highest affinity to 3'-AMP. Also hydrolyzes polyphosphate (exopolyphosphatase activity) with the preference for short-chain-length substrates (P20-25). Might be involved in the regulation of dNTP and NTP pools, and in the turnover of 3'-mononucleotides produced by numerous intracellular RNases (T1, T2, and F) during the degradation of various RNAs.


ensembl_gene_id: Z4053
symbol: ygbO
gene_biotype: protein_coding
description:
  Putative hydrogenase subunit; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.


ensembl_gene_id: Z4054
symbol: ygbB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: Z4055
symbol: ygbP
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.


ensembl_gene_id: Z4056
symbol: ftsB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: Z4057
symbol: ygbE
gene_biotype: protein_coding
description:
  Putative cytochrome oxidase subunit; Residues 1 to 107 of 107 are 99.06 pct identical to residues 1 to 107 of 107 from Escherichia coli K-12 Strain MG1655: B2749.


ensembl_gene_id: Z4059
symbol: cysN
gene_biotype: protein_coding
description:
  ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: Z4060
symbol: cysD
gene_biotype: protein_coding
description:
  ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2; Residues 1 to 302 of 302 are 99.66 pct identical to residues 1 to 302 of 302 from Escherichia coli K-12 Strain MG1655: B2752.


ensembl_gene_id: Z4061
symbol: iap
gene_biotype: protein_coding
description:
  Alkaline phosphatase isozyme conversion, aminopeptidase; Residues 1 to 345 of 345 are 98.84 pct identical to residues 1 to 345 of 345 from Escherichia coli K-12 Strain MG1655: B2753.


ensembl_gene_id: Z4062
symbol: ygbF
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 94 of 97 are 86.17 pct identical to residues 23 to 116 of 116 from Escherichia coli K-12 Strain MG1655: B2754.


ensembl_gene_id: Z4064
symbol: ygbT
gene_biotype: protein_coding
description:
  Orf; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Z4065
symbol: casE
gene_biotype: protein_coding
description:
  Orf; Residues 13 to 212 of 216 are 28.01 pct identical to residues 3 to 198 of 199 from Escherichia coli K-12 Strain MG1655: B2756.


ensembl_gene_id: Z4066
symbol: casD
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 160 of 248 are 35.11 pct identical to residues 3 to 159 of 226 from Escherichia coli K-12 Strain MG1655: B2757.


ensembl_gene_id: Z4067
symbol: casC
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 300 of 351 are 30.96 pct identical to residues 1 to 298 of 363 from Escherichia coli K-12 Strain MG1655: B2758.


ensembl_gene_id: Z4069
symbol: casA
gene_biotype: protein_coding
description:
  Orf; Residues 5 to 307 of 520 are 24.27 pct identical to residues 2 to 291 of 502 from Escherichia coli K-12 Strain MG1655: B2760.


ensembl_gene_id: Z4070
symbol: ygcB
gene_biotype: protein_coding
description:
  Orf; Residues 20 to 797 of 899 are 28.02 pct identical to residues 10 to 780 of 888 from Escherichia coli K-12 Strain MG1655: B2761.


ensembl_gene_id: Z4073
symbol: cysI
gene_biotype: protein_coding
description:
  Sulfite reductase, alpha subunit; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: Z4074
symbol: cysJ
gene_biotype: protein_coding
description:
  Sulfite reductase (NADPH), flavoprotein beta subunit; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component; Belongs to the NADPH-dependent sulphite reductase flavoprotein subunit CysJ family. In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.


ensembl_gene_id: Z4075
symbol: ygcM
gene_biotype: protein_coding
description:
  Putative 6-pyruvoyl tetrahydrobiopterin synthase; Catalyzes the conversion of 7,8-dihydroneopterin triphosphate (H2NTP) to 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) and acetaldehyde.


ensembl_gene_id: Z4078
symbol: ygcP
gene_biotype: protein_coding
description:
  Putative anti-terminator regulatory protein; Residues 1 to 191 of 191 are 98.95 pct identical to residues 1 to 191 of 191 from Escherichia coli K-12 Strain MG1655: B2768.


ensembl_gene_id: Z4079
symbol: Z4079
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 91 of 91 are 95.60 pct identical to residues 207 to 297 of 297 from Escherichia coli K-12 Strain MG1655: B2769.


ensembl_gene_id: Z4080
symbol: Z4080
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 189 of 189 are 95.23 pct identical to residues 12 to 200 of 297 from Escherichia coli K-12 Strain MG1655: B2769.


ensembl_gene_id: Z4081
symbol: ygcR
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 261 of 261 are 97.31 pct identical to residues 1 to 261 of 261 from Escherichia coli K-12 Strain MG1655: B2770.


ensembl_gene_id: Z4082
symbol: Z4082
gene_biotype: protein_coding
description:
  Partial putative transport protein; Residues 1 to 91 of 91 are 96.70 pct identical to residues 379 to 469 of 469 from Escherichia coli K-12 Strain MG1655: B2771.


ensembl_gene_id: Z4083
symbol: Z4083
gene_biotype: protein_coding
description:
  Partial putative transport protein; Residues 1 to 368 of 401 are 98.10 pct identical to residues 1 to 370 of 469 from Escherichia coli K-12 Strain MG1655: B2771.


ensembl_gene_id: Z4084
symbol: ygcU
gene_biotype: protein_coding
description:
  Putative alkyl-dihydroxyacetonephosphate synthase; Residues 1 to 264 of 264 are 99.24 pct identical to residues 1 to 264 of 264 from Escherichia coli K-12 Strain MG1655: B2772; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.


ensembl_gene_id: Z4085
symbol: ygcW
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 286 of 286 are 98.60 pct identical to residues 1 to 286 of 286 from Escherichia coli K-12 Strain MG1655: B2774.


ensembl_gene_id: Z4086
symbol: yqcE
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 425 of 425 are 99.05 pct identical to residues 1 to 425 of 425 from Escherichia coli K-12 Strain MG1655: B2775.


ensembl_gene_id: Z4087
symbol: ygcE
gene_biotype: protein_coding
description:
  Putative kinase; Residues 1 to 492 of 492 are 98.78 pct identical to residues 1 to 492 of 492 from Escherichia coli K-12 Strain MG1655: B2776.


ensembl_gene_id: Z4089
symbol: ygcF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: Z4090
symbol: Orf-4
gene_biotype: protein_coding
description:
  Orf; Residues 5 to 157 of 164 are 39.86 pct identical to residues 71 to 221 of 221 from GenPept 118 : gi|3322862|gb|AAC65544.1| (AE001232) Tp70 protein [Treponema pallidum].


ensembl_gene_id: Z4091
symbol: Orf-5
gene_biotype: protein_coding
description:
  Orf; Residues 9 to 194 of 232 are 43.08 pct identical to residues 24 to 211 of 313 from GenPept 118 : gi|882672|gb|AAA69288.1| (U29580) ORF_o313 [Escherichia coli].


ensembl_gene_id: Z4092
symbol: Orf-6
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 147 of 382 are 31.37 pct identical to residues 24 to 173 of 313 from GenPept 118 : gi|882672|gb|AAA69288.1| (U29580) ORF_o313 [Escherichia coli].


ensembl_gene_id: Z4093
symbol: Orf-7
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 301 of 301 are 40.26 pct identical to residues 24 to 313 of 313 from GenPept 118 : gi|882672|gb|AAA69288.1| (U29580) ORF_o313 [Escherichia coli].


ensembl_gene_id: Z4094
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.


ensembl_gene_id: Z4095
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Z4096
symbol: mazG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in the regulation of bacterial cell survival under conditions of nutritional stress. Regulates the MazE-MazF toxin- antitoxin (TA) system that mediates programmed cell death (PCD). This is achieved by lowering the cellular concentration of (p)ppGpp produced by RelA under amino acid starvation, thus protecting the cell from the toxicity of MazF. Reduction of (p)ppGpp can be achieved by direct degradation of (p)ppGpp or by degradation of NTPs, which are substrates for (p)ppGpp synthesis by RelA (By similarity); Belongs to the nucleoside triphosphate py [...]


ensembl_gene_id: Z4097
symbol: chpA
gene_biotype: protein_coding
description:
  Probable growth inhibitor, PemK-like, autoregulated; Toxic component of a type II toxin-antitoxin (TA) system. MazF is a sequence-specific endoribonuclease that inhibits protein synthesis and induces bacterial stasis. It is very stable, single- strand specific and cleavage is independent of the ribosome. The endoribonuclease activity (a toxin) is inhibited by the labile cognate antitoxin MazE. Toxicity results when the levels of MazE decrease in the cell, leading to mRNA degradation. Both MazE and MazE-MazF bind to the promoter region of the mazE-mazF operon to inhibit their transcript [...]


ensembl_gene_id: Z4098
symbol: chpR
gene_biotype: protein_coding
description:
  Suppressor of inhibitory function of ChpA, PemI-like, autoregulated; Antitoxin component of a type II toxin-antitoxin (TA) system. Labile antitoxin that binds to its cognate MazF endoribonuclease toxin and neutralizes its activity. Both MazE and MazE-MazF bind to the promoter region of the mazE-mazF operon to inhibit their transcription. Belongs to the PemI family.


ensembl_gene_id: Z4099
symbol: relA
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I (GTP pyrophosphokinase); In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp (By similarity).


ensembl_gene_id: Z4100
symbol: ygcA
gene_biotype: protein_coding
description:
  Putative enzyme; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.


ensembl_gene_id: Z4101
symbol: barA
gene_biotype: protein_coding
description:
  Sensor-regulator, activates OmpR by phophorylation; Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay (By similarity).


ensembl_gene_id: Z4102
symbol: ygcX
gene_biotype: protein_coding
description:
  Putative glucarate dehydratase; Catalyzes the dehydration of glucarate to 5-keto-4-deoxy-D- glucarate (5-kdGluc). Also acts on L-idarate (By similarity).


ensembl_gene_id: Z4103
symbol: ygcY
gene_biotype: protein_coding
description:
  Putative glucarate dehydratase; Residues 1 to 365 of 365 are 99.17 pct identical to residues 82 to 446 of 446 from Escherichia coli K-12 Strain MG1655: B2788.


ensembl_gene_id: Z4104
symbol: Z4104
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 73 of 73 are 95.89 pct identical to residues 1 to 73 of 446 from Escherichia coli K-12 Strain MG1655: B2788.


ensembl_gene_id: Z4105
symbol: gudP
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 450 of 450 are 99.33 pct identical to residues 1 to 450 of 450 from Escherichia coli K-12 Strain MG1655: B2789.


ensembl_gene_id: Z4106
symbol: yqcA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Probable electron transporter; Belongs to the flavodoxin family. MioC subfamily.


ensembl_gene_id: Z4107
symbol: truC
gene_biotype: protein_coding
description:
  Hypothetical protein; Responsible for synthesis of pseudouridine from uracil-65 in transfer RNAs; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Z4108
symbol: yqcC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 109 of 109 are 98.16 pct identical to residues 1 to 109 of 109 from Escherichia coli K-12 Strain MG1655: B2792.


ensembl_gene_id: Z4110
symbol: syd
gene_biotype: protein_coding
description:
  Interacts with secY; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.


ensembl_gene_id: Z4111
symbol: yqcD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).


ensembl_gene_id: Z4112
symbol: ygdH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the hydrolysis of the N-glycosidic bond of diverse pyrimidine and purine nucleotide 5'-monophosphates, to form ribose 5- phosphate and the corresponding free base. Can use AMP, GMP, IMP, CMP, dTMP and UMP as substrates. Cannot catalyze the reverse reactions. May contribute to nucleoside pool homeostasis by degrading excess nucleotides and feeding back the ribose moiety to catabolism. Belongs to the LOG family.


ensembl_gene_id: Z4113
symbol: sdaC
gene_biotype: protein_coding
description:
  Probable serine transporter; Involved in the import of serine into the cell. May be required for phage C1 adsorption by interacting with DrcB. May also be involved in ampicillin sensitivity (By similarity).


ensembl_gene_id: Z4114
symbol: sdaB
gene_biotype: protein_coding
description:
  L-serine dehydratase (deaminase), L-SD2; Residues 1 to 455 of 455 are 99.56 pct identical to residues 1 to 455 of 455 from Escherichia coli K-12 Strain MG1655: B2797; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: Z4115
symbol: exo
gene_biotype: protein_coding
description:
  5'-3' exonuclease; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment.


ensembl_gene_id: Z4116
symbol: fucO
gene_biotype: protein_coding
description:
  L-1,2-propanediol oxidoreductase; Residues 1 to 383 of 383 are 100.00 pct identical to residues 1 to 383 of 383 from Escherichia coli K-12 Strain MG1655: B2799.


ensembl_gene_id: Z4117
symbol: fucA
gene_biotype: protein_coding
description:
  L-fuculose-1-phosphate aldolase; Involved in the degradation of L-fucose and D-arabinose. Catalyzes the reversible cleavage of L-fuculose 1-phosphate (Fuc1P) to yield dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.


ensembl_gene_id: Z4118
symbol: fucP
gene_biotype: protein_coding
description:
  Fucose permease; Residues 1 to 438 of 438 are 99.77 pct identical to residues 1 to 438 of 438 from Escherichia coli K-12 Strain MG1655: B2801.


ensembl_gene_id: Z4122
symbol: fucR
gene_biotype: protein_coding
description:
  Positive regulator of the fuc operon; Residues 1 to 242 of 243 are 100.00 pct identical to residues 1 to 242 of 243 from Escherichia coli K-12 Strain MG1655: B2805.


ensembl_gene_id: Z4123
symbol: ygdE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.


ensembl_gene_id: Z4124
symbol: ygdD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 131 of 131 are 100.00 pct identical to residues 1 to 131 of 131 from Escherichia coli K-12 Strain MG1655: B2807.


ensembl_gene_id: Z4125
symbol: gcvA
gene_biotype: protein_coding
description:
  Positive regulator of gcv operon; Regulatory protein for the glycine cleavage system operon (gcv). Mediates activation of gcv by glycine and repression by purines. GcvA is negatively autoregulated. Binds to three sites upstream of the gcv promoter (By similarity); Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Z4126
symbol: ygdI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 76 of 76 are 100.00 pct identical to residues 1 to 76 of 76 from Escherichia coli K-12 Strain MG1655: B2809.


ensembl_gene_id: Z4127
symbol: csdA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 401 of 401 are 99.00 pct identical to residues 1 to 401 of 401 from Escherichia coli K-12 Strain MG1655: B2810.


ensembl_gene_id: Z4128
symbol: ygdK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Stimulates the cysteine desulfurase activity of CsdA. Contains a cysteine residue (Cys-61) that acts to accept sulfur liberated via the desulfurase activity of CsdA. May be able to transfer sulfur to TcdA/CsdL. Seems to support the function of TcdA in the generation of cyclic threonylcarbamoyladenosine at position 37 (ct(6)A37) in tRNAs that read codons beginning with adenine. Does not appear to participate in Fe/S biogenesis (By similarity).


ensembl_gene_id: Z4129
symbol: ygdL
gene_biotype: protein_coding
description:
  Putative enzyme; Residues 1 to 268 of 268 are 98.88 pct identical to residues 1 to 268 of 268 from Escherichia coli K-12 Strain MG1655: B2812.


ensembl_gene_id: Z4130
symbol: mltA
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase A; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division. Degrades murein glycan strands and insoluble, high-molecular weight murein sacculi (By similarity).


ensembl_gene_id: Z4134
symbol: amiC
gene_biotype: protein_coding
description:
  Putative amidase; Residues 1 to 447 of 447 are 99.77 pct identical to residues 1 to 447 of 447 from Escherichia coli K-12 Strain MG1655: B2817.


ensembl_gene_id: Z4135
symbol: argA
gene_biotype: protein_coding
description:
  N-acetylglutamate synthase; Residues 1 to 443 of 443 are 100.00 pct identical to residues 1 to 443 of 443 from Escherichia coli K-12 Strain MG1655: B2818; Belongs to the acetyltransferase family. ArgA subfamily.


ensembl_gene_id: Z4136
symbol: recD
gene_biotype: protein_coding
description:
  DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the  [...]


ensembl_gene_id: Z4138
symbol: ptr
gene_biotype: protein_coding
description:
  Protease III; Endopeptidase that degrades small peptides of less than 7 kDa, such as glucagon and insulin.


ensembl_gene_id: Z4140
symbol: ppdC
gene_biotype: protein_coding
description:
  Prepilin peptidase dependent protein C; Residues 1 to 107 of 107 are 98.13 pct identical to residues 1 to 107 of 107 from Escherichia coli K-12 Strain MG1655: B2823.


ensembl_gene_id: Z4141
symbol: ygdB
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 121 of 121 are 92.56 pct identical to residues 1 to 121 of 121 from Escherichia coli K-12 Strain MG1655: B2824.


ensembl_gene_id: Z4142
symbol: ppdB
gene_biotype: protein_coding
description:
  Prepilin peptidase dependent protein B; Residues 1 to 187 of 187 are 98.39 pct identical to residues 1 to 187 of 187 from Escherichia coli K-12 Strain MG1655: B2825.


ensembl_gene_id: Z4143
symbol: ppdA
gene_biotype: protein_coding
description:
  Prepilin peptidase dependent protein A; Residues 1 to 156 of 156 are 98.07 pct identical to residues 1 to 156 of 156 from Escherichia coli K-12 Strain MG1655: B2826.


ensembl_gene_id: Z4144
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthetase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. Belongs to the thymidylate synthase family. Bacterial-type ThyA subfamily.


ensembl_gene_id: Z4145
symbol: lgt
gene_biotype: protein_coding
description:
  Phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Z4146
symbol: ptsP
gene_biotype: protein_coding
description:
  PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins); Residues 1 to 748 of 748 are 99.86 pct identical to residues 1 to 748 of 748 from Escherichia coli K-12 Strain MG1655: B2829; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Z4147
symbol: ygdP
gene_biotype: protein_coding
description:
  Putative invasion protein; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: Z4149
symbol: mutH
gene_biotype: protein_coding
description:
  Methyl-directed mismatch repair; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair; Belongs to the MutH family.


ensembl_gene_id: Z4150
symbol: ygdQ
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 237 of 237 are 100.00 pct identical to residues 1 to 237 of 237 from Escherichia coli K-12 Strain MG1655: B2832.


ensembl_gene_id: Z4151
symbol: ygdR
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 72 of 72 are 100.00 pct identical to residues 1 to 72 of 72 from Escherichia coli K-12 Strain MG1655: B2833.


ensembl_gene_id: Z4152
symbol: tas
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 346 of 346 are 99.71 pct identical to residues 1 to 346 of 346 from Escherichia coli K-12 Strain MG1655: B2834.


ensembl_gene_id: Z4153
symbol: ygeD
gene_biotype: protein_coding
description:
  Putative resistance proteins; Catalyzes the facilitated diffusion of 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) into the cell; Belongs to the major facilitator superfamily. LplT (TC 2.A.1.42) family.


ensembl_gene_id: Z4154
symbol: aas
gene_biotype: protein_coding
description:
  2-acyl-glycerophospho-ethanolamine acyltransferase; Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1.


ensembl_gene_id: Z4155
symbol: galR
gene_biotype: protein_coding
description:
  Repressor of galETK operon; Residues 1 to 343 of 343 are 99.70 pct identical to residues 1 to 343 of 343 from Escherichia coli K-12 Strain MG1655: B2837.


ensembl_gene_id: Z4156
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: Z4157
symbol: lysR
gene_biotype: protein_coding
description:
  Positive regulator for lys; Residues 1 to 311 of 311 are 98.71 pct identical to residues 1 to 311 of 311 from Escherichia coli K-12 Strain MG1655: B2839; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Z4160
symbol: ygeA
gene_biotype: protein_coding
description:
  Putative resistance proteins; Exhibits racemase activity for both L-glutamate and L- aspartate; Belongs to the aspartate/glutamate racemases family.


ensembl_gene_id: Z4161
symbol: araE
gene_biotype: protein_coding
description:
  Low-affinity L-arabinose transport system proton symport protein; Uptake of arabinose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: Z4162
symbol: kduD
gene_biotype: protein_coding
description:
  2-deoxy-D-gluconate 3-dehydrogenase; Residues 1 to 253 of 253 are 98.81 pct identical to residues 1 to 253 of 253 from Escherichia coli K-12 Strain MG1655: B2842.


ensembl_gene_id: Z4163
symbol: kduI
gene_biotype: protein_coding
description:
  Homolog of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate.


ensembl_gene_id: Z4164
symbol: yqeF
gene_biotype: protein_coding
description:
  Putative acyltransferase; Residues 1 to 394 of 394 are 99.49 pct identical to residues 1 to 394 of 394 from Escherichia coli K-12 Strain MG1655: B2844; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Z4165
symbol: yqeG
gene_biotype: protein_coding
description:
  Putative transporter protein; Residues 1 to 409 of 409 are 100.00 pct identical to residues 1 to 409 of 409 from Escherichia coli K-12 Strain MG1655: B2845.


ensembl_gene_id: Z4166
symbol: yqeH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 230 of 230 are 99.13 pct identical to residues 1 to 230 of 230 from Escherichia coli K-12 Strain MG1655: B2846.


ensembl_gene_id: Z4167
symbol: yqeI
gene_biotype: protein_coding
description:
  Putative sensory transducer; Residues 1 to 268 of 269 are 98.88 pct identical to residues 1 to 268 of 269 from Escherichia coli K-12 Strain MG1655: B2847.


ensembl_gene_id: Z4168
symbol: yqeJ
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 130 of 130 are 98.46 pct identical to residues 35 to 164 of 164 from Escherichia coli K-12 Strain MG1655: B2848.


ensembl_gene_id: Z4169
symbol: yqeK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 145 of 145 are 97.24 pct identical to residues 1 to 145 of 145 from Escherichia coli K-12 Strain MG1655: B2849.


ensembl_gene_id: Z4171
symbol: ygeF
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 134 of 163 are 94.02 pct identical to residues 1 to 134 of 148 from Escherichia coli K-12 Strain MG1655: B2850.


ensembl_gene_id: Z4172
symbol: ygeG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 163 of 163 are 95.09 pct identical to residues 1 to 163 of 163 from Escherichia coli K-12 Strain MG1655: B2851.


ensembl_gene_id: Z4173
symbol: ygeH
gene_biotype: protein_coding
description:
  Putative invasion protein; Residues 1 to 458 of 458 are 96.72 pct identical to residues 1 to 458 of 458 from Escherichia coli K-12 Strain MG1655: B2852.


ensembl_gene_id: Z4174
symbol: ygeI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 72 of 72 are 94.44 pct identical to residues 1 to 72 of 72 from Escherichia coli K-12 Strain MG1655: B2853.


ensembl_gene_id: Z4175
symbol: pbl
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 21 to 153 of 167 are 90.22 pct identical to residues 1 to 132 of 138 from Escherichia coli K-12 Strain MG1655: B2854.


ensembl_gene_id: Z4176
symbol: ygeK
gene_biotype: protein_coding
description:
  Putative 2-component transcriptional regulator; Residues 1 to 148 of 148 are 100.00 pct identical to residues 1 to 148 of 148 from Escherichia coli K-12 Strain MG1655: B2855.


ensembl_gene_id: Z4178
symbol: ygeM
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 142 of 143 are 95.07 pct identical to residues 1 to 142 of 143 from Escherichia coli K-12 Strain MG1655: B2857.


ensembl_gene_id: Z4179
symbol: Z4179
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 18 to 81 of 86 are 96.87 pct identical to residues 1 to 64 of 73 from Escherichia coli K-12 Strain MG1655: B2858.


ensembl_gene_id: Z4180
symbol: eprK
gene_biotype: protein_coding
description:
  Putative lipoprotein of type III secretion apparatus; Residues 2 to 232 of 244 are 53.87 pct identical to residues 4 to 231 of 252 from GenPept 118 : gi|717103|gb|AAB60191.1| (U21676) PrgK protein [Salmonella typhimurium].


ensembl_gene_id: Z4181
symbol: eprJ
gene_biotype: protein_coding
description:
  Putative Type III secretion apparatus protein; Residues 18 to 110 of 110 are 32.97 pct identical to residues 5 to 97 of 97 from GenPept 118 : gi|829065|dbj|BAA09147.1| (D50601) ORF7 [Shigella sonnei].


ensembl_gene_id: Z4182
symbol: Z4182
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 259 of 262 are 29.06 pct identical to residues 124 to 380 of 392 from GenPept 118 : gi|717100|gb|AAB60188.1| (U21676) PrgH protein [Salmonella typhimurium].


ensembl_gene_id: Z4185
symbol: eprS
gene_biotype: protein_coding
description:
  Putative integral membrane protein-component of type III secretion apparatus; Residues 2 to 349 of 373 are 54.44 pct identical to residues 3 to 350 of 356 from GenPept 118 : gi|404293|emb|CAA51927.1| (X73525) surface presentation of antigens [Salmonella typhimurium].


ensembl_gene_id: Z4186
symbol: epaR2
gene_biotype: protein_coding
description:
  Putative integral membrane protein-component of typeIII secretion apparatus; Residues 3 to 67 of 78 are 56.92 pct identical to residues 180 to 244 of 263 from GenPept 118 : gi|404292|emb|CAA51926.1| (X73525) surface presentation of antigens [Salmonella typhimurium].


ensembl_gene_id: Z4187
symbol: epaR1
gene_biotype: protein_coding
description:
  Type III secretion apparatus protein; Residues 5 to 150 of 150 are 44.52 pct identical to residues 5 to 150 of 263 from GenPept 118 : gi|404292|emb|CAA51926.1| (X73525) surface presentation of antigens [Salmonella typhimurium].


ensembl_gene_id: Z4188
symbol: epaQ
gene_biotype: protein_coding
description:
  Type III secretion apparatus protein; Residues 1 to 86 of 86 are 68.60 pct identical to residues 1 to 86 of 86 from GenPept 118 : gi|973263|gb|AAC43967.1| (U29346) SpaQ [Salmonella senftenberg].


ensembl_gene_id: Z4189
symbol: escR-2
gene_biotype: protein_coding
description:
  Putative integral membrane protein-component of typeIII secretion apparatus; Residues 1 to 218 of 221 are 69.05 pct identical to residues 1 to 223 of 224 from GenPept 118 : gi|975759|gb|AAC43849.1| (U29360) SpaP [Salmonella enterica].


ensembl_gene_id: Z4190
symbol: epaO
gene_biotype: protein_coding
description:
  typeIII secretion apparatus protein; Residues 35 to 326 of 328 are 32.44 pct identical to residues 23 to 301 of 303 from GenPept 118 : gi|973281|gb|AAC43947.1| (U29351) SpaO [Salmonella enterica].


ensembl_gene_id: Z4191
symbol: eivJ2
gene_biotype: protein_coding
description:
  Type III secretion apparatus protein; Residues 97 to 178 of 189 are 38.55 pct identical to residues 252 to 332 of 336 from GenPept 118 : gi|1155301|gb|AAC45001.1| (U43305) SpaN [Salmonella enterica].


ensembl_gene_id: Z4193
symbol: eivI
gene_biotype: protein_coding
description:
  Type III secretion apparatus protein; Residues 2 to 102 of 111 are 31.68 pct identical to residues 45 to 145 of 147 from GenPept 118 : gi|1155297|gb|AAC44998.1| (U43304) SpaM [Salmonella enterica].


ensembl_gene_id: Z4194
symbol: eivC
gene_biotype: protein_coding
description:
  Type III secretion apparatus protein; Residues 10 to 396 of 439 are 63.30 pct identical to residues 1 to 386 of 432 from GenPept 118 : gi|497222|gb|AAA74038.1| (U08279) invC [Salmonella typhimurium].


ensembl_gene_id: Z4195
symbol: eivA
gene_biotype: protein_coding
description:
  Type III secretion apparatus protein; Residues 1 to 686 of 686 are 64.00 pct identical to residues 1 to 685 of 685 from GenPept 118 : gi|461369|gb|AAA16867.1| (M90846) GTG start codon [Salmonella typhimurium].


ensembl_gene_id: Z4196
symbol: eivE
gene_biotype: protein_coding
description:
  Putative secreted protein; Residues 25 to 368 of 381 are 38.68 pct identical to residues 25 to 370 of 372 from GenPept 118 : gi|1236869|gb|AAC45053.1| (U43269) invasion protein [Salmonella enterica].


ensembl_gene_id: Z4197
symbol: eivG
gene_biotype: protein_coding
description:
  Type III secretion apparatus protein; Residues 5 to 562 of 567 are 53.65 pct identical to residues 1 to 556 of 562 from GenPept 118 : gi|474942|emb|CAA53049.1| (X75302) invG [Salmonella typhimurium].


ensembl_gene_id: Z4198
symbol: eivF
gene_biotype: protein_coding
description:
  Putative regulatory protein for type III secretion apparatus; Residues 46 to 245 of 249 are 40.39 pct identical to residues 8 to 207 of 216 from GenPept 118 : gi|497224|gb|AAA74039.1| (U08280) invF [Salmonella typhimurium].


ensembl_gene_id: Z4200
symbol: ygeP
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 87 to 185 of 342 are 97.97 pct identical to residues 1 to 99 of 99 from Escherichia coli K-12 Strain MG1655: B2862.


ensembl_gene_id: Z4201
symbol: Z4201
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 201 of 201 are 99.00 pct identical to residues 1 to 201 of 278 from Escherichia coli K-12 Strain MG1655: B2863.


ensembl_gene_id: Z4203
symbol: ygeR
gene_biotype: protein_coding
description:
  Putative lipoprotein; Residues 1 to 192 of 223 are 98.95 pct identical to residues 22 to 213 of 259 from Escherichia coli K-12 Strain MG1655: B2865.


ensembl_gene_id: Z4205
symbol: xdhA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Presumed to be a dehydrogenase, but possibly an oxidase. Participates in limited purine salvage (requires aspartate) but does not support aerobic growth on purines as the sole carbon source (purine catabolism) (By similarity).


ensembl_gene_id: Z4206
symbol: ygeT
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Presumed to be a dehydrogenase, but possibly an oxidase. Participates in limited purine salvage (requires aspartate) but does not support aerobic growth on purines as the sole carbon source (purine catabolism) (By similarity).


ensembl_gene_id: Z4208
symbol: ygeV
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Residues 1 to 592 of 592 are 99.32 pct identical to residues 1 to 592 of 592 from Escherichia coli K-12 Strain MG1655: B2869.


ensembl_gene_id: Z4209
symbol: ygeW
gene_biotype: protein_coding
description:
  Putative carbamoyl transferase; Residues 25 to 372 of 396 are 99.42 pct identical to residues 1 to 348 of 363 from Escherichia coli K-12 Strain MG1655: B2870.


ensembl_gene_id: Z4210
symbol: ygeX
gene_biotype: protein_coding
description:
  Putative dehydratase; Catalyzes the alpha,beta-elimination reaction of both L- and D-alpha,beta-diaminopropionate (DAP) to form pyruvate and ammonia. The D-isomer of serine is degraded to pyruvate, though very poorly; other amino acids (L-serine, D- and L-threonine, D- and L-beta-Cl-alanine) are not substrates.


ensembl_gene_id: Z4211
symbol: ygeY
gene_biotype: protein_coding
description:
  Putative deacetylase; Residues 1 to 403 of 403 are 100.00 pct identical to residues 1 to 403 of 403 from Escherichia coli K-12 Strain MG1655: B2872.


ensembl_gene_id: Z4212
symbol: hyuA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the stereospecific hydrolysis of the cyclic amide bond of D-hydantoin derivatives with an aromatic side chains at the 5'- position. Has no activity on dihydropyrimidines. The physiological function is unknown.


ensembl_gene_id: Z4213
symbol: yqeA
gene_biotype: protein_coding
description:
  Putative kinase; Residues 1 to 310 of 310 are 99.35 pct identical to residues 1 to 310 of 310 from Escherichia coli K-12 Strain MG1655: B2874; Belongs to the carbamate kinase family.


ensembl_gene_id: Z4214
symbol: Z4214
gene_biotype: protein_coding
description:
  Putative synthases; Residues 1 to 541 of 541 are 99.44 pct identical to residues 1 to 541 of 541 from Escherichia coli K-12 Strain MG1655: B2875.


ensembl_gene_id: Z4215
symbol: yqeC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 235 of 235 are 98.72 pct identical to residues 1 to 235 of 235 from Escherichia coli K-12 Strain MG1655: B2876.


ensembl_gene_id: Z4216
symbol: ygfJ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 192 of 192 are 95.83 pct identical to residues 1 to 192 of 192 from Escherichia coli K-12 Strain MG1655: B2877.


ensembl_gene_id: Z4217
symbol: ygfK
gene_biotype: protein_coding
description:
  Putative oxidoreductase, Fe-S subunit; Could be an iron-sulfur flavoprotein with NADPH:O(2) oxidoreductase activity.


ensembl_gene_id: Z4218
symbol: ssnA
gene_biotype: protein_coding
description:
  Putative proteoglycan; Residues 1 to 464 of 464 are 98.49 pct identical to residues 1 to 464 of 464 from Escherichia coli K-12 Strain MG1655: B2879.


ensembl_gene_id: Z4219
symbol: ygfM
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 259 of 259 are 100.00 pct identical to residues 1 to 259 of 259 from Escherichia coli K-12 Strain MG1655: B2880.


ensembl_gene_id: Z4220
symbol: xdhD
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Probably has no xanthine dehydrogenase activity; however deletion results in increased adenine sensitivity, suggesting that this protein contributes to the conversion of adenine to guanine nucleotides during purine salvage.


ensembl_gene_id: Z4221
symbol: ygfO
gene_biotype: protein_coding
description:
  Putative transport protein; Specific, proton motive force-dependent high-affinity transporter for xanthine; Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily.


ensembl_gene_id: Z4222
symbol: ygfP
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.


ensembl_gene_id: Z4223
symbol: ghxQ
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 6 to 455 of 455 are 82.44 pct identical to residues 1 to 449 of 449 from Escherichia coli K-12 Strain MG1655: B4064.


ensembl_gene_id: Z4224
symbol: ygfS
gene_biotype: protein_coding
description:
  Putative oxidoreductase, Fe-S subunit; Residues 1 to 131 of 131 are 97.70 pct identical to residues 33 to 163 of 163 from Escherichia coli K-12 Strain MG1655: B2886.


ensembl_gene_id: Z4225
symbol: ygfT
gene_biotype: protein_coding
description:
  Putative oxidoreductase, Fe-S subunit; Residues 1 to 644 of 644 are 99.53 pct identical to residues 1 to 644 of 644 from Escherichia coli K-12 Strain MG1655: B2887.


ensembl_gene_id: Z4226
symbol: ygfU
gene_biotype: protein_coding
description:
  Putative permease; Residues 1 to 505 of 505 are 99.60 pct identical to residues 1 to 505 of 505 from Escherichia coli K-12 Strain MG1655: B2888.


ensembl_gene_id: Z4227
symbol: idi
gene_biotype: protein_coding
description:
  Putative enzyme; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).


ensembl_gene_id: Z4228
symbol: lysS
gene_biotype: protein_coding
description:
  Lysine tRNA synthetase, constitutive; Residues 1 to 505 of 505 are 99.80 pct identical to residues 1 to 505 of 505 from Escherichia coli K-12 Strain MG1655: B2890; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Z4229
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor RF-2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Z4230
symbol: recJ
gene_biotype: protein_coding
description:
  ssDNA exonuclease, 5' --> 3' specific; Residues 1 to 577 of 577 are 99.65 pct identical to residues 1 to 577 of 577 from Escherichia coli K-12 Strain MG1655: B2892.


ensembl_gene_id: Z4231
symbol: dsbC
gene_biotype: protein_coding
description:
  Protein disulfide isomerase II; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process. DsbC is reoxidized by a yet uncharacterized protein. Also acts as a disulfide isomerase (By similarity).


ensembl_gene_id: Z4232
symbol: xerD
gene_biotype: protein_coding
description:
  Site-specific recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges t [...]


ensembl_gene_id: Z4233
symbol: fldB
gene_biotype: protein_coding
description:
  Flavodoxin 2; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.


ensembl_gene_id: Z4234
symbol: cptA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 135 of 135 are 99.25 pct identical to residues 1 to 135 of 135 from Escherichia coli K-12 Strain MG1655: B2896.


ensembl_gene_id: Z4235
symbol: ygfY
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well.


ensembl_gene_id: Z4236
symbol: ygfZ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Folate-binding protein involved in regulating the level of ATP-DnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication; Belongs to the tRNA-modifying YgfZ family.


ensembl_gene_id: Z4237
symbol: yqfA
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 219 of 219 are 100.00 pct identical to residues 1 to 219 of 219 from Escherichia coli K-12 Strain MG1655: B2899.


ensembl_gene_id: Z4238
symbol: yqfB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 103 of 103 are 100.00 pct identical to residues 1 to 103 of 103 from Escherichia coli K-12 Strain MG1655: B2900; Belongs to the UPF0267 family.


ensembl_gene_id: Z4239
symbol: bglA
gene_biotype: protein_coding
description:
  Residues 1 to 479 of 479 are 98.53 pct identical to residues 1 to 479 of 479 from Escherichia coli K-12 Strain MG1655: B2901; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: Z4240
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine decarboxylase, P protein of glycine cleavage system; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: Z4241
symbol: gcvH
gene_biotype: protein_coding
description:
  In glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: Z4242
symbol: gcvT
gene_biotype: protein_coding
description:
  Aminomethyltransferase (T protein; The glycine cleavage system catalyzes the degradation of glycine.


ensembl_gene_id: Z4243
symbol: visC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 400 of 400 are 98.75 pct identical to residues 1 to 400 of 400 from Escherichia coli K-12 Strain MG1655: B2906.


ensembl_gene_id: Z4244
symbol: ubiH
gene_biotype: protein_coding
description:
  2-octaprenyl-6-methoxyphenol--> 2-octaprenyl-6-methoxy-1, 4-benzoquinone; Residues 1 to 392 of 392 are 98.97 pct identical to residues 1 to 392 of 392 from Escherichia coli K-12 Strain MG1655: B2907.


ensembl_gene_id: Z4245
symbol: pepP
gene_biotype: protein_coding
description:
  Proline aminopeptidase P II; Residues 1 to 441 of 441 are 99.09 pct identical to residues 1 to 441 of 441 from Escherichia coli K-12 Strain MG1655: B2908.


ensembl_gene_id: Z4246
symbol: ygfB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 194 of 194 are 100.00 pct identical to residues 1 to 194 of 194 from Escherichia coli K-12 Strain MG1655: B2909; Belongs to the UPF0149 family.


ensembl_gene_id: Z4247
symbol: ygfE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: Z4249
symbol: ygfA
gene_biotype: protein_coding
description:
  Putative ligase; Involved in the removal of 5-formyltetrahydrofolate. In vitro, it is a potent inhibitor of various folate-dependent enzymes in the C1 metabolism network and in vivo it might function as a folate storage. 5-formyltetrahydrofolate is also used as an antifolate rescue agent in cancer chemotherapy. Catalyzes the irreversible ATP-dependent transformation of 5-formyltetrahydrofolate (5-CHO-THF) to form 5,10- methenyltetrahydrofolate (5,10-CH=THF). The reverse reaction is catalyzed by the serine hydroxymethyltransferase GlyA (SHMT) (By similarity).


ensembl_gene_id: Z4251
symbol: serA
gene_biotype: protein_coding
description:
  D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: Z4252
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribosephosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: Z4253
symbol: iciA
gene_biotype: protein_coding
description:
  Replication initiation inhibitor, binds to 13-mers at oriC; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Z4254
symbol: sbm
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase (MCM); Residues 1 to 714 of 714 are 99.15 pct identical to residues 1 to 714 of 714 from Escherichia coli K-12 Strain MG1655: B2917.


ensembl_gene_id: Z4255
symbol: ygfD
gene_biotype: protein_coding
description:
  Putative nucleotide-binding protein; Residues 1 to 331 of 331 are 99.69 pct identical to residues 1 to 331 of 331 from Escherichia coli K-12 Strain MG1655: B2918.


ensembl_gene_id: Z4256
symbol: ygfG
gene_biotype: protein_coding
description:
  Putative enzyme; Residues 1 to 275 of 275 are 100.00 pct identical to residues 1 to 275 of 275 from Escherichia coli K-12 Strain MG1655: B2919; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Z4257
symbol: ygfH
gene_biotype: protein_coding
description:
  Putative coenzyme A transferase; Residues 1 to 492 of 492 are 99.39 pct identical to residues 1 to 492 of 492 from Escherichia coli K-12 Strain MG1655: B2920.


ensembl_gene_id: Z4258
symbol: Z4258
gene_biotype: protein_coding
description:
  Partial putative transcriptional regulator LYSR-type; Residues 1 to 192 of 192 are 99.47 pct identical to residues 6 to 197 of 303 from Escherichia coli K-12 Strain MG1655: B2921.


ensembl_gene_id: Z4259
symbol: yggE
gene_biotype: protein_coding
description:
  Putative actin; Residues 1 to 246 of 246 are 100.00 pct identical to residues 1 to 246 of 246 from Escherichia coli K-12 Strain MG1655: B2922.


ensembl_gene_id: Z4260
symbol: yggA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in the export of arginine. Important to control the intracellular level of arginine and the correct balance between arginine and lysine (By similarity).


ensembl_gene_id: Z4261
symbol: yggB
gene_biotype: protein_coding
description:
  Putative transport protein; Mechanosensitive channel that participates in the regulation of osmotic pressure changes within the cell, opening in response to stretch forces in the membrane lipid bilayer, without the need for other proteins. Contributes to normal resistance to hypoosmotic shock. Forms an ion channel of 1.0 nanosiemens conductance with a slight preference for anions. The channel is sensitive to voltage; as the membrane is depolarized, less tension is required to open the channel and vice versa. The channel is characterized by short bursts of activity that last for a few s [...]


ensembl_gene_id: Z4263
symbol: fba
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: Z4265
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Residues 1 to 387 of 387 are 99.74 pct identical to residues 1 to 387 of 387 from Escherichia coli K-12 Strain MG1655: B2926; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: Z4266
symbol: epd
gene_biotype: protein_coding
description:
  D-erythrose 4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate.


ensembl_gene_id: Z4267
symbol: Orf-8
gene_biotype: protein_coding
description:
  Orf; Residues 17 to 116 of 143 are 31.99 pct identical to residues 4 to 97 of 121 from GenPept 118 : gi|2622341|gb|AAB85719.1| (AE000890) unknown [Methanobacterium thermoautotrophicum].


ensembl_gene_id: Z4268
symbol: Orf-9
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 185 of 192 are 31.25 pct identical to residues 11 to 196 of 200 from GenPept 118 : gi|5123516|gb|AAD40355.1| (AF036485) hypothetical protein [Plasmid pNZ4000].


ensembl_gene_id: Z4269
symbol: Orf-10
gene_biotype: protein_coding
description:
  Orf; Residues 14 to 222 of 235 are 25.70 pct identical to residues 39 to 240 of 263 from GenPept 118 : gi|5123517|gb|AAD40356.1| (AF036485) hypothetical protein [Plasmid pNZ4000].


ensembl_gene_id: Z4270
symbol: Z4270
gene_biotype: protein_coding
description:
  Putative ATP-binding protein of ABC transport system; Residues 1 to 200 of 225 are 32.17 pct identical to residues 7 to 206 of 490 from GenPept 118 : gi|2633676|emb|CAB13179.1| (Z99110) similar to cation ABC transporter (ATP-binding protein) [Bacillus subtilis].


ensembl_gene_id: Z4271
symbol: Z4271
gene_biotype: protein_coding
description:
  Putative ATP-binding protein of ABC transport system; Residues 12 to 223 of 236 are 31.30 pct identical to residues 1 to 213 of 311 from GenPept 118 : gi|2622836|gb|AAB86176.1| (AE000928) cobalt transport ATP-binding protein O [Methanobacterium thermoautotrophicum].


ensembl_gene_id: Z4273
symbol: yggC
gene_biotype: protein_coding
description:
  Putative kinase; Residues 1 to 233 of 237 are 84.12 pct identical to residues 1 to 233 of 237 from GenPept 118 : gi|1789296|gb|AAC75965.1| (AE000376) putative kinase [Escherichia coli].


ensembl_gene_id: Z4274
symbol: yggD
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Residues 1 to 169 of 169 are 94.67 pct identical to residues 1 to 169 of 169 from Escherichia coli K-12 Strain MG1655: B2929.


ensembl_gene_id: Z4275
symbol: yggF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 321 of 321 are 98.13 pct identical to residues 1 to 321 of 321 from Escherichia coli K-12 Strain MG1655: B2930.


ensembl_gene_id: Z4276
symbol: yggP
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 329 of 329 are 99.69 pct identical to residues 1 to 329 of 329 from Escherichia coli K-12 Strain MG1655: B2931.


ensembl_gene_id: Z4277
symbol: cmtA
gene_biotype: protein_coding
description:
  PTS system, mannitol-specific enzyme II component, cryptic; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II CmtAB PTS system is involved in D-mannitol transport.


ensembl_gene_id: Z4279
symbol: tktA
gene_biotype: protein_coding
description:
  Transketolase 1 isozyme; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: Z4280
symbol: yggG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 294 of 294 are 99.31 pct identical to residues 1 to 294 of 294 from Escherichia coli K-12 Strain MG1655: B2936.


ensembl_gene_id: Z4281
symbol: speB
gene_biotype: protein_coding
description:
  Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.


ensembl_gene_id: Z4284
symbol: yqgB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 48 of 48 are 100.00 pct identical to residues 1 to 48 of 48 from Escherichia coli K-12 Strain MG1655: B2939.


ensembl_gene_id: Z4285
symbol: yqgC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 71 of 71 are 100.00 pct identical to residues 1 to 71 of 71 from Escherichia coli K-12 Strain MG1655: B2940.


ensembl_gene_id: Z4286
symbol: yqgD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 83 of 83 are 98.79 pct identical to residues 1 to 83 of 83 from Escherichia coli K-12 Strain MG1655: B2941.


ensembl_gene_id: Z4287
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase 1 (AdoMet synthetase); Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: Z4288
symbol: galP
gene_biotype: protein_coding
description:
  Galactose-proton symport of transport system; Residues 1 to 464 of 464 are 99.56 pct identical to residues 1 to 464 of 464 from Escherichia coli K-12 Strain MG1655: B2943; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: Z4289
symbol: sprT
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 165 of 165 are 98.78 pct identical to residues 1 to 165 of 165 from Escherichia coli K-12 Strain MG1655: B2944; Belongs to the SprT family.


ensembl_gene_id: Z4290
symbol: endA
gene_biotype: protein_coding
description:
  DNA-specific endonuclease I; Residues 1 to 235 of 235 are 99.14 pct identical to residues 1 to 235 of 235 from Escherichia coli K-12 Strain MG1655: B2945.


ensembl_gene_id: Z4291
symbol: yggJ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: Z4292
symbol: gshB
gene_biotype: protein_coding
description:
  Glutathione synthetase; Residues 1 to 315 of 315 are 100.00 pct identical to residues 1 to 315 of 316 from Escherichia coli K-12 Strain MG1655: B2947.


ensembl_gene_id: Z4293
symbol: yqgE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 211 of 211 are 100.00 pct identical to residues 1 to 211 of 211 from Escherichia coli K-12 Strain MG1655: B2948; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: Z4294
symbol: yqgF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: Z4295
symbol: yggR
gene_biotype: protein_coding
description:
  Putative protein transport; Residues 1 to 341 of 341 are 97.94 pct identical to residues 1 to 341 of 341 from Escherichia coli K-12 Strain MG1655: B2950.


ensembl_gene_id: Z4296
symbol: yggS
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: Z4297
symbol: yggT
gene_biotype: protein_coding
description:
  Putative resistance protein; Residues 1 to 188 of 188 are 100.00 pct identical to residues 1 to 188 of 188 from Escherichia coli K-12 Strain MG1655: B2952.


ensembl_gene_id: Z4298
symbol: yggU
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 100 of 100 are 98.00 pct identical to residues 1 to 100 of 100 from Escherichia coli K-12 Strain MG1655: B2953; Belongs to the UPF0235 family.


ensembl_gene_id: Z4299
symbol: yggV
gene_biotype: protein_coding
description:
  Putative ribosomal protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: Z4300
symbol: yggW
gene_biotype: protein_coding
description:
  Putative oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Z4301
symbol: yggM
gene_biotype: protein_coding
description:
  Putative alpha helix chain; Residues 1 to 335 of 335 are 98.50 pct identical to residues 1 to 335 of 335 from Escherichia coli K-12 Strain MG1655: B2956.


ensembl_gene_id: Z4302
symbol: ansB
gene_biotype: protein_coding
description:
  Periplasmic L-asparaginase II; Residues 1 to 348 of 348 are 98.85 pct identical to residues 1 to 348 of 348 from Escherichia coli K-12 Strain MG1655: B2957; Belongs to the asparaginase 1 family.


ensembl_gene_id: Z4303
symbol: yggN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 239 of 239 are 99.58 pct identical to residues 1 to 239 of 239 from Escherichia coli K-12 Strain MG1655: B2958.


ensembl_gene_id: Z4304
symbol: yggL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 118 of 118 are 99.15 pct identical to residues 1 to 118 of 118 from Escherichia coli K-12 Strain MG1655: B2959.


ensembl_gene_id: Z4305
symbol: yggH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.


ensembl_gene_id: Z4307
symbol: yggX
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes; Belongs to the Fe(2+)-trafficking protein family.


ensembl_gene_id: Z4308
symbol: mltC
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase C; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.


ensembl_gene_id: Z4309
symbol: nupG
gene_biotype: protein_coding
description:
  Transport of nucleosides, permease protein; Broad-specificity transporter of purine and pyrimidine nucleosides. Driven by a proton motive force; Belongs to the major facilitator superfamily. Nucleoside:H(+) symporter (NHS) (TC 2.A.1.10) family.


ensembl_gene_id: Z4310
symbol: speC
gene_biotype: protein_coding
description:
  Ornithine decarboxylase isozyme; Residues 1 to 731 of 731 are 98.76 pct identical to residues 1 to 731 of 731 from Escherichia coli K-12 Strain MG1655: B2965.


ensembl_gene_id: Z4311
symbol: yqgA
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 235 of 235 are 99.14 pct identical to residues 1 to 235 of 235 from Escherichia coli K-12 Strain MG1655: B2966.


ensembl_gene_id: Z4313
symbol: Z4313
gene_biotype: protein_coding
description:
  Putative pathogenicity island integrase; Residues 26 to 421 of 421 are 66.41 pct identical to residues 1 to 396 of 396 from GenPept 118 : gi|1790722|gb|AAC77227.1| (AE000498) prophage P4 integrase [Escherichia coli]; Belongs to the 'phage' integrase family.


ensembl_gene_id: Z4314
symbol: Z4314
gene_biotype: protein_coding
description:
  Unknown protein encoded by ISEc8; Residues 56 to 261 of 261 are 98.54 pct identical to residues 307 to 512 of 512 from GenPept 118 : gi|3414883|gb|AAC31494.1| (AF071034) L0015 [Escherichia coli].


ensembl_gene_id: Z4315
symbol: Z4315
gene_biotype: protein_coding
description:
  Unknown protein encoded by ISEc8; Residues 20 to 223 of 224 are 39.04 pct identical to residues 19 to 215 of 216 from GenPept 118 : gi|6009425|dbj|BAA84884.1| (AB024946) orf49 [Escherichia coli].


ensembl_gene_id: Z4316
symbol: tnpB-4
gene_biotype: protein_coding
description:
  Unknown protein encoded by ISEc8; Residues 1 to 115 of 115 are 81.73 pct identical to residues 1 to 115 of 115 from GenPept 118 : gi|6009426|dbj|BAA84885.1| (AB024946) orf50 [Escherichia coli].


ensembl_gene_id: Z4317
symbol: Z4317
gene_biotype: protein_coding
description:
  Unknown protein encoded by ISEc8; Residues 1 to 468 of 482 are 63.57 pct identical to residues 1 to 470 of 523 from GenPept 118 : gi|6009427|dbj|BAA84886.1| (AB024946) orf51 [Escherichia coli].


ensembl_gene_id: Z4318
symbol: Z4318
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 10 to 270 of 314 are 43.63 pct identical to residues 6 to 278 of 618 from GenPept 118 : gi|1483594|emb|CAA68055.1| (X99719) similarity with helicase; orf1 [Salmonella enterica].


ensembl_gene_id: Z4321
symbol: Z4321
gene_biotype: protein_coding
description:
  Putative PagC-like membrane protein; Residues 7 to 177 of 177 are 45.71 pct identical to residues 23 to 188 of 188 from GenPept 118 : gi|154233|gb|AAA27179.1| (M55546) virulence protein [Salmonella typhimurium].


ensembl_gene_id: Z4324
symbol: Z4324
gene_biotype: protein_coding
description:
  Putative transposase; Residues 4 to 242 of 246 are 32.77 pct identical to residues 175 to 469 of 476 from GenPept 118 : gi|3135591|gb|AAC34792.1| (AF061932) Tn5 transposase [Plasposon pTnMod-STp'].


ensembl_gene_id: Z4326
symbol: espL2
gene_biotype: protein_coding
description:
  Putative enterotoxin; Residues 5 to 543 of 549 are 38.20 pct identical to residues 22 to 559 of 565 from GenPept 118 : gi|1109754|emb|CAA90938.1| (Z54211) ShET2 enterotoxin [Shigella flexneri].


ensembl_gene_id: Z4328
symbol: nleB1
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 24 to 329 of 329 are 63.39 pct identical to residues 26 to 331 of 336 from GenPept 118 : gi|6960367|gb|AAF33527.1| (AF170176) hypothetical protein predicted by Glimmer [Salmonella typhimurium LT2].


ensembl_gene_id: Z4330
symbol: Z4330
gene_biotype: protein_coding
description:
  Putative transposase; Residues 1 to 281 of 281 are 88.77 pct identical to residues 15 to 299 of 343 from GenPept 118 : gi|47542|emb|CAA29389.1| (X05955) ORF (343 AA) [Shigella sonnei].


ensembl_gene_id: Z4332
symbol: Z4332
gene_biotype: protein_coding
description:
  Putative cytotoxin; Residues 1 to 433 of 433 are 99.30 pct identical to residues 1 to 433 of 3223 from GenPept 118 : gi|6013469|gb|AAD49229.2|AF159462_1 (AF159462) EHEC factor for adherence [Escherichia coli].


ensembl_gene_id: Z4333
symbol: Z4333
gene_biotype: protein_coding
description:
  Putative cytotoxin; Residues 1 to 275 of 275 are 100.00 pct identical to residues 437 to 711 of 3223 from GenPept 118 : gi|6013469|gb|AAD49229.2|AF159462_1 (AF159462) EHEC factor for adherence [Escherichia coli].


ensembl_gene_id: Z4334
symbol: Z4334
gene_biotype: protein_coding
description:
  IS629 transposase; Residues 1 to 215 of 215 are 99.53 pct identical to residues 82 to 296 of 296 from GenPept 118 : gi|3822179|gb|AAC70133.1| (AF074613) transposase [Escherichia coli O157:H7].


ensembl_gene_id: Z4338
symbol: tnpB-5
gene_biotype: protein_coding
description:
  Unknown protein encoded by ISEc8; Residues 1 to 106 of 116 are 70.75 pct identical to residues 1 to 106 of 115 from GenPept 118 : gi|6009426|dbj|BAA84885.1| (AB024946) orf50 [Escherichia coli].


ensembl_gene_id: Z4340
symbol: Z4340
gene_biotype: protein_coding
description:
  Unknown protein encoded by ISEc8; Residues 1 to 464 of 467 are 63.79 pct identical to residues 50 to 509 of 512 from GenPept 118 : gi|3414883|gb|AAC31494.1| (AF071034) L0015 [Escherichia coli].


ensembl_gene_id: Z4341
symbol: pitB
gene_biotype: protein_coding
description:
  Partial putative transport protein; Residues 1 to 412 of 438 are 99.27 pct identical to residues 1 to 412 of 499 from Escherichia coli K-12 Strain MG1655: B2987.


ensembl_gene_id: Z4342
symbol: gsp
gene_biotype: protein_coding
description:
  Glutathionylspermidine synthetase/amidase; Residues 1 to 619 of 619 are 99.83 pct identical to residues 1 to 619 of 619 from Escherichia coli K-12 Strain MG1655: B2988.


ensembl_gene_id: Z4343
symbol: yghU
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 304 of 304 are 100.00 pct identical to residues 1 to 304 of 304 from Escherichia coli K-12 Strain MG1655: B2989.


ensembl_gene_id: Z4344
symbol: hybG
gene_biotype: protein_coding
description:
  Hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2; Involved in the maturation of [NiFe] hydrogenases. Involved in the biosynthesis of the Fe(CN)(2)CO cofactor. HybG delivers iron- bound CO(2) to HypD where reduction to CO probably occurs. In complex with HypD, accepts the cyanide ligand generated by HypF and HypE, and also coordinates the carbon monoxide ligand. Belongs to the HupF/HypC family.


ensembl_gene_id: Z4345
symbol: hybF
gene_biotype: protein_coding
description:
  May modulate levels of hydrogenease-2; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: Z4346
symbol: hybE
gene_biotype: protein_coding
description:
  Member of hyb operon; Residues 1 to 162 of 162 are 99.38 pct identical to residues 1 to 162 of 162 from Escherichia coli K-12 Strain MG1655: B2992; Belongs to the HupJ family.


ensembl_gene_id: Z4347
symbol: hybD
gene_biotype: protein_coding
description:
  Probable processing element for hydrogenase-2; Residues 1 to 164 of 164 are 99.39 pct identical to residues 1 to 164 of 164 from Escherichia coli K-12 Strain MG1655: B2993.


ensembl_gene_id: Z4348
symbol: hybC
gene_biotype: protein_coding
description:
  Probable large subunit, hydrogenase-2; This is one of three E.coli hydrogenases synthesized in response to different physiological conditions. HYD2 is involved in hydrogen uptake (By similarity).


ensembl_gene_id: Z4349
symbol: hybB
gene_biotype: protein_coding
description:
  Probable cytochrome Ni/Fe component of hydrogenase-2; Residues 1 to 392 of 392 are 99.74 pct identical to residues 1 to 392 of 392 from Escherichia coli K-12 Strain MG1655: B2995.


ensembl_gene_id: Z4350
symbol: hybA
gene_biotype: protein_coding
description:
  Hydrogenase-2 small subunit; Participates in the periplasmic electron-transferring activity of hydrogenase 2 during its catalytic turnover.


ensembl_gene_id: Z4351
symbol: hybO
gene_biotype: protein_coding
description:
  Putative hydrogenase subunit; This is one of three E.coli hydrogenases synthesized in response to different physiological conditions. HYD2 is involved in hydrogen uptake.


ensembl_gene_id: Z4352
symbol: yghW
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 95 of 95 are 100.00 pct identical to residues 1 to 95 of 95 from Escherichia coli K-12 Strain MG1655: B2998.


ensembl_gene_id: Z4353
symbol: yghX
gene_biotype: protein_coding
description:
  Putative enzyme; Residues 173 to 308 of 308 are 100.00 pct identical to residues 1 to 136 of 136 from Escherichia coli K-12 Strain MG1655: B2999.


ensembl_gene_id: Z4354
symbol: gpr
gene_biotype: protein_coding
description:
  Putative reductase; Catalyzes the stereospecific, NADPH-dependent reduction of L- glyceraldehyde 3-phosphate (L-GAP). The physiological role of gpr is the detoxification of L-GAP, which may be formed by non-enzymatic racemization of GAP. Also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo (By similarity). Belongs to the shaker potassium channel beta subunit family.


ensembl_gene_id: Z4355
symbol: yqhA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 164 of 164 are 100.00 pct identical to residues 1 to 164 of 164 from Escherichia coli K-12 Strain MG1655: B3002.


ensembl_gene_id: Z4356
symbol: yghA
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 294 of 294 are 100.00 pct identical to residues 1 to 294 of 294 from Escherichia coli K-12 Strain MG1655: B3003; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Z4357
symbol: Z4357
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 81 of 81 are 96.29 pct identical to residues 1 to 81 of 81 from Escherichia coli K-12 Strain MG1655: B3004.


ensembl_gene_id: Z4358
symbol: exbD
gene_biotype: protein_coding
description:
  Uptake of enterochelin; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.


ensembl_gene_id: Z4359
symbol: exbB
gene_biotype: protein_coding
description:
  Uptake of enterochelin; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity).


ensembl_gene_id: Z4360
symbol: Z4360
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 51 of 51 are 100.00 pct identical to residues 1 to 51 of 51 from Escherichia coli K-12 Strain MG1655: B3007.


ensembl_gene_id: Z4361
symbol: metC
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase (beta-cystathionase); Residues 1 to 395 of 395 are 98.48 pct identical to residues 1 to 395 of 395 from Escherichia coli K-12 Strain MG1655: B3008.


ensembl_gene_id: Z4362
symbol: yghB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 219 of 219 are 100.00 pct identical to residues 1 to 219 of 219 from Escherichia coli K-12 Strain MG1655: B3009.


ensembl_gene_id: Z4363
symbol: yqhC
gene_biotype: protein_coding
description:
  Putative ARAC-type regulatory protein; Residues 1 to 375 of 375 are 99.46 pct identical to residues 1 to 375 of 375 from Escherichia coli K-12 Strain MG1655: B3010.


ensembl_gene_id: Z4364
symbol: yqhD
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 387 of 387 are 99.74 pct identical to residues 1 to 387 of 387 from Escherichia coli K-12 Strain MG1655: B3011.


ensembl_gene_id: Z4365
symbol: yqhE
gene_biotype: protein_coding
description:
  Putative enzyme; Catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).


ensembl_gene_id: Z4367
symbol: Z4367
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 77 of 91 are 97.40 pct identical to residues 1 to 77 of 309 from Escherichia coli K-12 Strain MG1655: B3013.


ensembl_gene_id: Z4368
symbol: yqhG
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 217 of 217 are 98.16 pct identical to residues 92 to 309 of 309 from Escherichia coli K-12 Strain MG1655: B3013.


ensembl_gene_id: Z4369
symbol: yqhH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 85 of 85 are 98.82 pct identical to residues 1 to 85 of 85 from Escherichia coli K-12 Strain MG1655: B3014.


ensembl_gene_id: Z4370
symbol: ygiQ
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 327 to 739 of 739 are 99.75 pct identical to residues 1 to 413 of 413 from Escherichia coli K-12 Strain MG1655: B3015.


ensembl_gene_id: Z4371
symbol: sufI
gene_biotype: protein_coding
description:
  Suppressor of ftsI; Cell division protein that is required for growth during stress conditions. May be involved in protecting or stabilizing the divisomal assembly under conditions of stress; Belongs to the FtsP family.


ensembl_gene_id: Z4372
symbol: plsC
gene_biotype: protein_coding
description:
  1-acyl-sn-glycerol-3-phosphate acyltransferase; Residues 1 to 245 of 245 are 99.59 pct identical to residues 1 to 245 of 245 from Escherichia coli K-12 Strain MG1655: B3018; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.


ensembl_gene_id: Z4373
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: Z4374
symbol: ygiS
gene_biotype: protein_coding
description:
  Putative transport periplasmic protein; Residues 1 to 535 of 535 are 98.87 pct identical to residues 1 to 535 of 535 from Escherichia coli K-12 Strain MG1655: B3020.


ensembl_gene_id: Z4376
symbol: ygiW
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 130 of 130 are 100.00 pct identical to residues 1 to 130 of 130 from Escherichia coli K-12 Strain MG1655: B3024.


ensembl_gene_id: Z4377
symbol: qseB
gene_biotype: protein_coding
description:
  Quorum sensing Escherichia coli regulator B; Member of a two-component regulatory system QseB/QseC. Activates the flagella regulon by activating transcription of FlhDC. Currently it is not known whether this effect is direct or not.


ensembl_gene_id: Z4378
symbol: qseC
gene_biotype: protein_coding
description:
  Quorum sensing Escherichia coli regulator C; Member of a two-component regulatory system QseB/QseC. Activates the flagella regulon by activating transcription of FlhDC. May activate QseB by phosphorylation.


ensembl_gene_id: Z4381
symbol: fitR
gene_biotype: protein_coding
description:
  Orf; Residues 4 to 245 of 295 are 26.45 pct identical to residues 18 to 255 of 305 from GenPept 118 : gi|1944008|dbj|BAA19503.1| (AB002150) YbbH [Bacillus subtilis].


ensembl_gene_id: Z4382
symbol: fitE
gene_biotype: protein_coding
description:
  Putative iron compound-binding protein of ABC transporter family; Residues 32 to 251 of 315 are 27.19 pct identical to residues 52 to 268 of 315 from GenPept 118 : gi|2635846|emb|CAB15338.1| (Z99121) ferrichrome ABC transporter (ferrichrome-binding protein) [Bacillus subtilis].


ensembl_gene_id: Z4383
symbol: fitD
gene_biotype: protein_coding
description:
  Putative iron compound permease protein of ABC transporter family; Residues 24 to 342 of 349 are 33.84 pct identical to residues 7 to 332 of 336 from GenPept 118 : gi|2635844|emb|CAB15336.1| (Z99121) ferrichrome ABC transporter (permease) [Bacillus subtilis]; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Z4384
symbol: fitC
gene_biotype: protein_coding
description:
  Putative iron compound permease protein of ABC transporter family; Residues 13 to 327 of 327 are 43.67 pct identical to residues 30 to 343 of 343 from GenPept 118 : gi|1651662|dbj|BAA16590.1| (D90899) iron(III) dicitrate transport system permease protein FecC [Synechocystis sp.]; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Z4385
symbol: fepC_2
gene_biotype: protein_coding
description:
  Putative ATP-binding protein of ABC transporter family; Residues 2 to 263 of 269 are 49.23 pct identical to residues 13 to 274 of 279 from GenPept 118 : gi|5731362|gb|AAD48883.1| (U52150) ATPase [Vibrio cholerae].


ensembl_gene_id: Z4386
symbol: fitA
gene_biotype: protein_coding
description:
  Putative iron compound receptor; Residues 26 to 713 of 713 are 30.85 pct identical to residues 165 to 853 of 853 from GenPept 118 : gi|1651681|dbj|BAA16609.1| (D90899) ferrichrome-iron receptor [Synechocystis sp.].


ensembl_gene_id: Z4387
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: Z4389
symbol: icc
gene_biotype: protein_coding
description:
  Regulator of lacZ; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: Z4390
symbol: yqiB
gene_biotype: protein_coding
description:
  Putative enzyme; Residues 1 to 140 of 140 are 100.00 pct identical to residues 1 to 140 of 140 from Escherichia coli K-12 Strain MG1655: B3033.


ensembl_gene_id: Z4391
symbol: yqiE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Acts on ADP-mannose and ADP-glucose as well as ADP-ribose. Prevents glycogen biosynthesis. The reaction catalyzed by this enzyme is a limiting step of the gluconeogenic process (By similarity).


ensembl_gene_id: Z4392
symbol: tolC
gene_biotype: protein_coding
description:
  Outer membrane channel; Residues 1 to 495 of 495 are 99.79 pct identical to residues 1 to 495 of 495 from Escherichia coli K-12 Strain MG1655: B3035.


ensembl_gene_id: Z4393
symbol: ygiA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 86 of 86 are 98.83 pct identical to residues 1 to 86 of 86 from Escherichia coli K-12 Strain MG1655: B3036.


ensembl_gene_id: Z4394
symbol: ygiB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 234 of 234 are 99.57 pct identical to residues 1 to 234 of 234 from Escherichia coli K-12 Strain MG1655: B3037; Belongs to the UPF0441 family.


ensembl_gene_id: Z4395
symbol: ygiC
gene_biotype: protein_coding
description:
  Putative synthetase/amidase; May be a ligase forming an amide bond. Shows ATPase activity (By similarity).


ensembl_gene_id: Z4396
symbol: ygiD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 271 of 271 are 98.52 pct identical to residues 1 to 271 of 271 from Escherichia coli K-12 Strain MG1655: B3039.


ensembl_gene_id: Z4397
symbol: ygiE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Mediates zinc uptake. May also transport other divalent cations (By similarity); Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.


ensembl_gene_id: Z4399
symbol: ribB
gene_biotype: protein_coding
description:
  3,4 dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.


ensembl_gene_id: Z4400
symbol: yqiC
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 106 of 111 are 86.79 pct identical to residues 9 to 114 of 116 from Escherichia coli K-12 Strain MG1655: B3042.


ensembl_gene_id: Z4401
symbol: glgS
gene_biotype: protein_coding
description:
  Glycogen biosynthesis, rpoS dependent; Major determinant of cell surface composition. Negatively regulates motility, adhesion and synthesis of biofilm exopolysaccharides.


ensembl_gene_id: Z4402
symbol: yqiJ
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 204 of 204 are 99.01 pct identical to residues 1 to 204 of 209 from Escherichia coli K-12 Strain MG1655: B3050.


ensembl_gene_id: Z4403
symbol: yqiK
gene_biotype: protein_coding
description:
  Putative membrane protein; Residues 1 to 553 of 553 are 98.73 pct identical to residues 1 to 553 of 553 from Escherichia coli K-12 Strain MG1655: B3051.


ensembl_gene_id: Z4405
symbol: hldE
gene_biotype: protein_coding
description:
  Putative kinase; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the N-terminal section; belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Z4406
symbol: glnE
gene_biotype: protein_coding
description:
  Adenylylating enzyme for glutamine synthetase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal trans [...]


ensembl_gene_id: Z4407
symbol: ygiF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 433 of 433 are 99.76 pct identical to residues 1 to 433 of 433 from Escherichia coli K-12 Strain MG1655: B3054.


ensembl_gene_id: Z4408
symbol: ygiM
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 206 of 206 are 99.51 pct identical to residues 1 to 206 of 206 from Escherichia coli K-12 Strain MG1655: B3055.


ensembl_gene_id: Z4409
symbol: cca
gene_biotype: protein_coding
description:
  tRNA nucleotidyl transferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.


ensembl_gene_id: Z4410
symbol: bacA
gene_biotype: protein_coding
description:
  Bacitracin resistance; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Z4411
symbol: ygiG
gene_biotype: protein_coding
description:
  Putative kinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: Z4412
symbol: ygiH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the transfer of an acyl group from acyl-ACP to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme can also utilize acyl-CoA as fatty acyl donor, but not acyl- PO(4); Belongs to the PlsY family.


ensembl_gene_id: Z4413
symbol: ygiP
gene_biotype: protein_coding
description:
  Putative transcriptional regulator LYSR-type; Positive regulator required for L-tartrate-dependent anaerobic growth on glycerol. Induces expression of the ttdA-ttdB-ygjE operon (By similarity).


ensembl_gene_id: Z4414
symbol: ttdA
gene_biotype: protein_coding
description:
  L-tartrate dehydratase, subunit A; Residues 1 to 303 of 303 are 99.00 pct identical to residues 1 to 303 of 303 from Escherichia coli K-12 Strain MG1655: B3061; Belongs to the class-I fumarase family.


ensembl_gene_id: Z4415
symbol: ttdB
gene_biotype: protein_coding
description:
  L-tartrate dehydratase, subunit B; Residues 1 to 201 of 201 are 99.00 pct identical to residues 1 to 201 of 201 from Escherichia coli K-12 Strain MG1655: B3062.


ensembl_gene_id: Z4416
symbol: ygjE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the uptake of tartrate in exchange for intracellular succinate. Essential for anaerobic L-tartrate fermentation (By similarity).


ensembl_gene_id: Z4417
symbol: ygjD
gene_biotype: protein_coding
description:
  Putative O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: Z4418
symbol: rpsU
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S21; Residues 1 to 71 of 71 are 100.00 pct identical to residues 1 to 71 of 71 from Escherichia coli K-12 Strain MG1655: B3065; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: Z4419
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA biosynthesis; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: Z4420
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase, sigma(70) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: Z4421
symbol: ygjF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Excises ethenocytosine and uracil, which can arise by alkylation or deamination of cytosine, respectively, from the corresponding mispairs with guanine in ds-DNA. It is capable of hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of the DNA and the mispaired base. The complementary strand guanine functions in substrate recognition. Required for DNA damage lesion repair in stationary-phase cells; Belongs to the uracil-DNA glycosylase (UDG) superfamily. TDG/mug family.


ensembl_gene_id: Z4423
symbol: yqjH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 254 of 254 are 99.60 pct identical to residues 1 to 254 of 254 from Escherichia coli K-12 Strain MG1655: B3070.


ensembl_gene_id: Z4424
symbol: yqjI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 207 of 207 are 99.03 pct identical to residues 1 to 207 of 207 from Escherichia coli K-12 Strain MG1655: B3071.


ensembl_gene_id: Z4425
symbol: aer
gene_biotype: protein_coding
description:
  Aerotaxis sensor receptor, flavoprotein; Residues 1 to 506 of 506 are 99.40 pct identical to residues 1 to 506 of 506 from Escherichia coli K-12 Strain MG1655: B3072.


ensembl_gene_id: Z4426
symbol: ygjG
gene_biotype: protein_coding
description:
  Probable ornithine aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate.


ensembl_gene_id: Z4427
symbol: ygjH
gene_biotype: protein_coding
description:
  Putative tRNA synthetase; Residues 1 to 110 of 110 are 98.18 pct identical to residues 1 to 110 of 110 from Escherichia coli K-12 Strain MG1655: B3074.


ensembl_gene_id: Z4428
symbol: ebgR
gene_biotype: protein_coding
description:
  Regulator of ebg operon; Residues 1 to 327 of 327 are 99.38 pct identical to residues 1 to 327 of 327 from Escherichia coli K-12 Strain MG1655: B3075.


ensembl_gene_id: Z4429
symbol: ebgA
gene_biotype: protein_coding
description:
  Evolved beta-D-galactosidase, alpha subunit; Residues 1 to 1042 of 1042 are 99.23 pct identical to residues 1 to 1042 of 1042 from Escherichia coli K-12 Strain MG1655: B3076.


ensembl_gene_id: Z4430
symbol: ebgC
gene_biotype: protein_coding
description:
  Evolved beta-D-galactosidase, beta subunit; Residues 1 to 149 of 149 are 99.32 pct identical to residues 1 to 149 of 149 from Escherichia coli K-12 Strain MG1655: B3077.


ensembl_gene_id: Z4431
symbol: ygjI
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 477 of 477 are 96.85 pct identical to residues 1 to 477 of 477 from Escherichia coli K-12 Strain MG1655: B3078.


ensembl_gene_id: Z4432
symbol: ygjJ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 356 of 356 are 99.71 pct identical to residues 1 to 356 of 356 from Escherichia coli K-12 Strain MG1655: B3079.


ensembl_gene_id: Z4433
symbol: ygjK
gene_biotype: protein_coding
description:
  Putative isomerase; Residues 1 to 783 of 783 are 98.46 pct identical to residues 1 to 783 of 783 from Escherichia coli K-12 Strain MG1655: B3080.


ensembl_gene_id: Z4434
symbol: ygjL
gene_biotype: protein_coding
description:
  Putative NADPH dehydrogenase; Residues 1 to 672 of 672 are 99.10 pct identical to residues 1 to 672 of 672 from Escherichia coli K-12 Strain MG1655: B3081.


ensembl_gene_id: Z4435
symbol: ygjM
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 138 of 138 are 98.55 pct identical to residues 1 to 138 of 138 from Escherichia coli K-12 Strain MG1655: B3082.


ensembl_gene_id: Z4436
symbol: ygjN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system. A probable translation-dependent mRNA interferase. Belongs to the HigB mRNA interferase family.


ensembl_gene_id: Z4438
symbol: ygjP
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 179 of 179 are 98.88 pct identical to residues 1 to 179 of 179 from Escherichia coli K-12 Strain MG1655: B3085.


ensembl_gene_id: Z4439
symbol: ygjQ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 230 of 230 are 93.47 pct identical to residues 1 to 230 of 230 from Escherichia coli K-12 Strain MG1655: B3086.


ensembl_gene_id: Z4440
symbol: ygjR
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 334 of 334 are 98.20 pct identical to residues 1 to 334 of 334 from Escherichia coli K-12 Strain MG1655: B3087.


ensembl_gene_id: Z4442
symbol: ygjU
gene_biotype: protein_coding
description:
  Putative transport protein; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: Z4443
symbol: ygjV
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 183 of 183 are 98.36 pct identical to residues 1 to 183 of 183 from Escherichia coli K-12 Strain MG1655: B3090.


ensembl_gene_id: Z4444
symbol: uxaA
gene_biotype: protein_coding
description:
  Altronate hydrolase; Residues 1 to 495 of 495 are 99.39 pct identical to residues 1 to 495 of 495 from Escherichia coli K-12 Strain MG1655: B3091.


ensembl_gene_id: Z4445
symbol: uxaC
gene_biotype: protein_coding
description:
  Uronate isomerase; Residues 1 to 470 of 470 are 99.78 pct identical to residues 1 to 470 of 470 from Escherichia coli K-12 Strain MG1655: B3092.


ensembl_gene_id: Z4446
symbol: exuT
gene_biotype: protein_coding
description:
  Transport of hexuronates; Aldohexuronate transport system; Belongs to the major facilitator superfamily. Phthalate permease family.


ensembl_gene_id: Z4448
symbol: exuR
gene_biotype: protein_coding
description:
  Negative regulator of exu regulon, exuT, uxaAC, and uxuB; Repressor for the exu regulon that encode genes involved in hexuronate utilization. It regulates the ExuT, UxaCA and UxuRAB operons. Binds D-tagaturonate and D-fructuronate as inducers (By similarity).


ensembl_gene_id: Z4449
symbol: yqjA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 220 of 220 are 100.00 pct identical to residues 1 to 220 of 220 from Escherichia coli K-12 Strain MG1655: B3095.


ensembl_gene_id: Z4450
symbol: yqjB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.


ensembl_gene_id: Z4451
symbol: yqjC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3097.


ensembl_gene_id: Z4452
symbol: yqjD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 101 of 101 are 100.00 pct identical to residues 1 to 101 of 101 from Escherichia coli K-12 Strain MG1655: B3098; Belongs to the ElaB/YgaM/YqjD family.


ensembl_gene_id: Z4453
symbol: yqjE
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 134 of 134 are 100.00 pct identical to residues 1 to 134 of 134 from Escherichia coli K-12 Strain MG1655: B3099.


ensembl_gene_id: Z4454
symbol: yqjK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 99 of 99 are 98.98 pct identical to residues 1 to 99 of 99 from Escherichia coli K-12 Strain MG1655: B3100.


ensembl_gene_id: Z4455
symbol: yqjF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 160 of 160 are 99.37 pct identical to residues 1 to 160 of 160 from Escherichia coli K-12 Strain MG1655: B3101.


ensembl_gene_id: Z4456
symbol: yqjG
gene_biotype: protein_coding
description:
  Putative transferase; Residues 1 to 328 of 328 are 98.17 pct identical to residues 1 to 328 of 328 from Escherichia coli K-12 Strain MG1655: B3102.


ensembl_gene_id: Z4457
symbol: yhaH
gene_biotype: protein_coding
description:
  Putative cytochrome; Residues 1 to 121 of 121 are 100.00 pct identical to residues 1 to 121 of 121 from Escherichia coli K-12 Strain MG1655: B3103.


ensembl_gene_id: Z4458
symbol: yhaI
gene_biotype: protein_coding
description:
  Putative cytochrome; Residues 1 to 118 of 118 are 100.00 pct identical to residues 1 to 118 of 118 from Escherichia coli K-12 Strain MG1655: B3104.


ensembl_gene_id: Z4459
symbol: yhaJ
gene_biotype: protein_coding
description:
  Putative transcriptional regulator LYSR-type; Positive regulator partially required for expression of genes in the locus of effacement (LEE) large pathogenicity island (PAI). Also partially responsible for expression of neighboring gene dlsT (yhaO) during late exponential growth. Binds to DNA of promoter 1 in LEE and DNA from the dlsT promoter region.


ensembl_gene_id: Z4461
symbol: yhaL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 56 of 56 are 98.21 pct identical to residues 1 to 56 of 56 from Escherichia coli K-12 Strain MG1655: B3107.


ensembl_gene_id: Z4462
symbol: yhaM
gene_biotype: protein_coding
description:
  Hypothetical protein; Thought to be a D-serine dehydratase, however it does not complement a dsdA (D-serine dehydratase) mutant in strain CFT073, suggesting it may not have that function.


ensembl_gene_id: Z4463
symbol: yhaO
gene_biotype: protein_coding
description:
  Putative transport system permease protein; Transports both D- and L-serine; allows growth of strain CFT073 cells normally unable to transport D-serine on that substrate. Transport relies on the H(+) gradient and is not competed by L- threonine. May play a role in L-cysteine detoxification (By similarity).


ensembl_gene_id: Z4464
symbol: tdcG_3
gene_biotype: protein_coding
description:
  Putative L-serine deaminase; Residues 3 to 455 of 456 are 73.28 pct identical to residues 1 to 453 of 454 from Escherichia coli K-12 Strain MG1655: B1814; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: Z4465
symbol: yhaR
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 150 of 150 are 99.33 pct identical to residues 1 to 150 of 150 from Escherichia coli K-12 Strain MG1655: B3113.


ensembl_gene_id: Z4466
symbol: tdcE
gene_biotype: protein_coding
description:
  Probable formate acetyltransferase 3; Residues 1 to 741 of 764 are 99.86 pct identical to residues 1 to 741 of 746 from Escherichia coli K-12 Strain MG1655: B3114.


ensembl_gene_id: Z4468
symbol: tdcC
gene_biotype: protein_coding
description:
  Anaerobically inducible L-threonine, L-serine permease; Involved in the import of threonine and serine into the cell, with the concomitant import of a proton (symport system). Belongs to the amino acid/polyamine transporter 2 family. SdaC/TdcC subfamily.


ensembl_gene_id: Z4469
symbol: tdcB
gene_biotype: protein_coding
description:
  Threonine dehydratase, catabolic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. TdcB also dehydrates serine to  [...]


ensembl_gene_id: Z4470
symbol: tdcA
gene_biotype: protein_coding
description:
  Transcriptional activator of tdc operon; Transcriptional activator for the tdcABCDE operon. Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Z4471
symbol: tdcR
gene_biotype: protein_coding
description:
  Threonine dehydratase operon activator protein; Residues 1 to 114 of 114 are 97.36 pct identical to residues 1 to 114 of 114 from Escherichia coli K-12 Strain MG1655: B3119.


ensembl_gene_id: Z4472
symbol: yhaB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 186 of 186 are 97.31 pct identical to residues 1 to 186 of 186 from Escherichia coli K-12 Strain MG1655: B3120.


ensembl_gene_id: Z4473
symbol: yhaC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 395 of 395 are 94.68 pct identical to residues 1 to 395 of 395 from Escherichia coli K-12 Strain MG1655: B3121.


ensembl_gene_id: Z4476
symbol: yhaD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 387 of 387 are 99.48 pct identical to residues 22 to 408 of 408 from Escherichia coli K-12 Strain MG1655: B3124; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Z4477
symbol: yhaE
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily.


ensembl_gene_id: Z4478
symbol: yhaF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the reversible retro-aldol cleavage of both 5-keto- 4-deoxy-D-glucarate and 2-keto-3-deoxy-D-glucarate to pyruvate and tartronic semialdehyde; Belongs to the HpcH/HpaI aldolase family. KDGluc aldolase subfamily.


ensembl_gene_id: Z4479
symbol: yhaU
gene_biotype: protein_coding
description:
  Putative transport protein; Uptake of D-galactarate; Belongs to the major facilitator superfamily. Phthalate permease family.


ensembl_gene_id: Z4480
symbol: yhaG
gene_biotype: protein_coding
description:
  Putative hydrolase; Catalyzes the dehydration of galactarate to form 5-dehydro-4- deoxy-D-glucarate.


ensembl_gene_id: Z4481
symbol: sohA
gene_biotype: protein_coding
description:
  Putative protease; Residues 1 to 111 of 111 are 99.09 pct identical to residues 1 to 111 of 111 from Escherichia coli K-12 Strain MG1655: B3129.


ensembl_gene_id: Z4482
symbol: yhaV
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system. Has RNase activity in vitro. Acts as a transcription factor. The YhaV/PrlF complex binds the prlF-yhaV operon, probably negatively regulating its expression (By similarity).


ensembl_gene_id: Z4483
symbol: agaR
gene_biotype: protein_coding
description:
  Putative DEOR-type transcriptional regulator of aga operon; Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism.


ensembl_gene_id: Z4484
symbol: agaZ
gene_biotype: protein_coding
description:
  Putative tagatose 6-phosphate kinase 2; Component of the tagatose-1,6-bisphosphate aldolase KbaYZ that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of KbaY. When expressed alone, KbaZ does not show any aldolase activity.


ensembl_gene_id: Z4485
symbol: agaV
gene_biotype: protein_coding
description:
  PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA); Residues 1 to 169 of 169 are 98.22 pct identical to residues 1 to 169 of 169 from Escherichia coli K-12 Strain MG1655: B3133.


ensembl_gene_id: Z4486
symbol: agaW
gene_biotype: protein_coding
description:
  Putative phosphotransferase system enzyme subunit; Residues 1 to 259 of 259 are 78.76 pct identical to residues 1 to 258 of 258 from GenPept 118 : gi|1732200|gb|AAC44680.1| (U65015) PTS permease for mannose subunit IIPMan [Vibrio furnissii].


ensembl_gene_id: Z4487
symbol: Z4487
gene_biotype: protein_coding
description:
  Putative phosphotransferase system enzyme subunit; Residues 20 to 288 of 292 are 83.64 pct identical to residues 21 to 289 of 293 from GenPept 118 : gi|1732201|gb|AAC44681.1| (U65015) PTS permease for mannose subunit IIBMan [Vibrio furnissii].


ensembl_gene_id: Z4488
symbol: Z4488
gene_biotype: protein_coding
description:
  Putative phosphotransferase system enzyme subunit; Residues 1 to 131 of 144 are 57.25 pct identical to residues 1 to 131 of 146 from GenPept 118 : gi|1732202|gb|AAC44682.1| (U65015) PTS permease for mannose subunit IIIMan N terminal domain [Vibrio furnissii].


ensembl_gene_id: Z4489
symbol: agaA
gene_biotype: protein_coding
description:
  Putative N-acetylgalctosamine-6-phosphate deacetylase; Residues 3 to 374 of 377 are 48.95 pct identical to residues 8 to 384 of 399 from GenPept 118 : gi|1732203|gb|AAC44683.1| (U65015) GlcNAc 6-P deacetylase [Vibrio furnissii].


ensembl_gene_id: Z4490
symbol: agaS
gene_biotype: protein_coding
description:
  Putative tagatose-6-phosphate aldose/ketose isomerase; Catalyzes the isomerization-deamination of galactosamine 6- phosphate to form tagatofuranose 6-phosphate and ammonium ion. Belongs to the SIS family. AgaS subfamily.


ensembl_gene_id: Z4491
symbol: agaY
gene_biotype: protein_coding
description:
  Tagatose-bisphosphate aldolase 2; Catalytic subunit of the tagatose-1,6-bisphosphate aldolase KbaYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires KbaZ subunit for full activity and stability.


ensembl_gene_id: Z4492
symbol: agaB
gene_biotype: protein_coding
description:
  PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA); Residues 1 to 158 of 158 are 99.36 pct identical to residues 1 to 158 of 158 from Escherichia coli K-12 Strain MG1655: B3138.


ensembl_gene_id: Z4493
symbol: agaC
gene_biotype: protein_coding
description:
  PTS system N-acetylgalactosamine-specific IIC component 1; Residues 1 to 191 of 191 are 100.00 pct identical to residues 77 to 267 of 267 from Escherichia coli K-12 Strain MG1655: B3139.


ensembl_gene_id: Z4494
symbol: agaD
gene_biotype: protein_coding
description:
  PTS system, N-acetylglucosamine enzyme IID component 1; Residues 1 to 263 of 263 are 99.61 pct identical to residues 1 to 263 of 263 from Escherichia coli K-12 Strain MG1655: B3140.


ensembl_gene_id: Z4495
symbol: agaI_1
gene_biotype: protein_coding
description:
  Putative galactosamine-6-phosphate isomerase; Residues 1 to 71 of 71 are 98.59 pct identical to residues 1 to 71 of 251 from Escherichia coli K-12 Strain MG1655: B3141.


ensembl_gene_id: Z4497
symbol: agaI_2
gene_biotype: protein_coding
description:
  Putative galactosamine-6-phosphate isomerase; Residues 1 to 169 of 169 are 97.63 pct identical to residues 83 to 251 of 251 from Escherichia coli K-12 Strain MG1655: B3141.


ensembl_gene_id: Z4498
symbol: yraH
gene_biotype: protein_coding
description:
  Putative fimbrial-like protein; Residues 1 to 194 of 194 are 94.32 pct identical to residues 1 to 194 of 194 from Escherichia coli K-12 Strain MG1655: B3142.


ensembl_gene_id: Z4499
symbol: yraI
gene_biotype: protein_coding
description:
  Putative chaperone; Residues 1 to 231 of 231 are 97.40 pct identical to residues 1 to 231 of 231 from Escherichia coli K-12 Strain MG1655: B3143.


ensembl_gene_id: Z4500
symbol: yraJ
gene_biotype: protein_coding
description:
  Putative outer membrane protein; Residues 1 to 838 of 838 are 99.04 pct identical to residues 1 to 838 of 838 from Escherichia coli K-12 Strain MG1655: B3144.


ensembl_gene_id: Z4501
symbol: Orf-11
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 165 of 174 are 98.18 pct identical to residues 10 to 174 of 429 from GenPept 118 : gi|606085|gb|AAA57948.1| (U18997) ORF_o429; overlaps o863, other starts possible [Escherichia coli].


ensembl_gene_id: Z4503
symbol: Z4503
gene_biotype: protein_coding
description:
  Putative transposase; Residues 1 to 215 of 215 are 99.53 pct identical to residues 82 to 296 of 296 from GenPept 118 : gi|3822179|gb|AAC70133.1| (AF074613) transposase [Escherichia coli O157:H7].


ensembl_gene_id: Z4504
symbol: Z4504
gene_biotype: protein_coding
description:
  Partial putative fimbrial protein; Residues 26 to 163 of 163 are 99.27 pct identical to residues 226 to 363 of 363 from Escherichia coli K-12 Strain MG1655: B3145.


ensembl_gene_id: Z4505
symbol: yraL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Z4506
symbol: yraM
gene_biotype: protein_coding
description:
  Putative glycosylase; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family.


ensembl_gene_id: Z4507
symbol: yraN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 131 of 131 are 96.94 pct identical to residues 1 to 131 of 131 from Escherichia coli K-12 Strain MG1655: B3148; Belongs to the UPF0102 family.


ensembl_gene_id: Z4508
symbol: yraO
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Required for the timely initiation of chromosomal replication via direct interactions with the DnaA initiator protein. Belongs to the SIS family. DiaA subfamily.


ensembl_gene_id: Z4509
symbol: yraP
gene_biotype: protein_coding
description:
  Putative periplasmic protein; Residues 1 to 191 of 191 are 100.00 pct identical to residues 1 to 191 of 191 from Escherichia coli K-12 Strain MG1655: B3150.


ensembl_gene_id: Z4510
symbol: yraQ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 346 of 346 are 99.42 pct identical to residues 1 to 346 of 346 from Escherichia coli K-12 Strain MG1655: B3151.


ensembl_gene_id: Z4511
symbol: yraR
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 226 of 226 are 99.11 pct identical to residues 1 to 226 of 226 from Escherichia coli K-12 Strain MG1655: B3152.


ensembl_gene_id: Z4512
symbol: yhbO
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 186 of 186 are 100.00 pct identical to residues 1 to 186 of 186 from Escherichia coli K-12 Strain MG1655: B3153.


ensembl_gene_id: Z4514
symbol: yhbP
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 147 of 147 are 97.27 pct identical to residues 1 to 147 of 147 from Escherichia coli K-12 Strain MG1655: B3154; Belongs to the UPF0306 family.


ensembl_gene_id: Z4516
symbol: yhbQ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 100 of 100 are 98.00 pct identical to residues 1 to 100 of 100 from Escherichia coli K-12 Strain MG1655: B3155; Belongs to the UPF0213 family.


ensembl_gene_id: Z4517
symbol: yhbS
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 167 of 167 are 100.00 pct identical to residues 1 to 167 of 167 from Escherichia coli K-12 Strain MG1655: B3156; Belongs to the acetyltransferase family.


ensembl_gene_id: Z4518
symbol: yhbT
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Required for O(2)-independent ubiquinone (coenzyme Q) biosynthesis. Likely functions as an accessory factor. Belongs to the UbiT family.


ensembl_gene_id: Z4519
symbol: yhbU
gene_biotype: protein_coding
description:
  Putative collagenase; Residues 1 to 331 of 331 are 99.69 pct identical to residues 1 to 331 of 331 from Escherichia coli K-12 Strain MG1655: B3158.


ensembl_gene_id: Z4520
symbol: yhbV
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 298 of 298 are 98.99 pct identical to residues 1 to 298 of 298 from Escherichia coli K-12 Strain MG1655: B3159.


ensembl_gene_id: Z4521
symbol: yhbW
gene_biotype: protein_coding
description:
  Putative enzyme; Residues 1 to 335 of 335 are 98.80 pct identical to residues 1 to 335 of 335 from Escherichia coli K-12 Strain MG1655: B3160.


ensembl_gene_id: Z4522
symbol: mtr
gene_biotype: protein_coding
description:
  Tryptophan-specific transport protein; Residues 1 to 414 of 414 are 99.51 pct identical to residues 1 to 414 of 414 from Escherichia coli K-12 Strain MG1655: B3161.


ensembl_gene_id: Z4523
symbol: deaD
gene_biotype: protein_coding
description:
  Inducible ATP-independent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.


ensembl_gene_id: Z4524
symbol: yhbM
gene_biotype: protein_coding
description:
  Putative control proteins; May be involved in cell division. May play a role in bacterial septation or regulation of cell wall degradation during cell division (By similarity).


ensembl_gene_id: Z4525
symbol: pnp
gene_biotype: protein_coding
description:
  Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Z4526
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.


ensembl_gene_id: Z4527
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine 5S synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: Z4528
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Z4529
symbol: infB
gene_biotype: protein_coding
description:
  Protein chain initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Z4531
symbol: yhbC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: Z4534
symbol: argG
gene_biotype: protein_coding
description:
  Argininosuccinate synthetase; Residues 1 to 447 of 447 are 99.77 pct identical to residues 1 to 447 of 447 from Escherichia coli K-12 Strain MG1655: B3172; Belongs to the argininosuccinate synthase family. Type 2 subfamily.


ensembl_gene_id: Z4535
symbol: yhbX
gene_biotype: protein_coding
description:
  Putative alkaline phosphatase I; There are several lipid A forms in this strain, including a phosphoethanolamine (1-O-P-pEtN) form; overexpression of this gene does not lead to higher levels of the 1-O-P-pEtN form of lipid A.


ensembl_gene_id: Z4537
symbol: secG
gene_biotype: protein_coding
description:
  Protein export - membrane protein; Involved in protein export. Participates in an early event of protein translocation (By similarity).


ensembl_gene_id: Z4538
symbol: mrsA
gene_biotype: protein_coding
description:
  Similar to phosphoglucomutases and phosphomannomutases; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: Z4539
symbol: folP
gene_biotype: protein_coding
description:
  7,8-dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: Z4540
symbol: hflB
gene_biotype: protein_coding
description:
  Degrades sigma32, integral membrane peptidase, cell division protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: Z4541
symbol: ftsJ
gene_biotype: protein_coding
description:
  Cell division protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: Z4542
symbol: yhbY
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 97 of 97 are 100.00 pct identical to residues 1 to 97 of 97 from Escherichia coli K-12 Strain MG1655: B3180.


ensembl_gene_id: Z4543
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor: cleaves 3' nucleotide of paused mRNA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides (By similarity).


ensembl_gene_id: Z4544
symbol: dacB
gene_biotype: protein_coding
description:
  D-alanyl-D-alanine carboxypeptidase, fraction B; Residues 1 to 477 of 477 are 99.79 pct identical to residues 1 to 477 of 477 from Escherichia coli K-12 Strain MG1655: B3182.


ensembl_gene_id: Z4545
symbol: yhbZ
gene_biotype: protein_coding
description:
  Putative GTP-binding factor; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: Z4546
symbol: yhbE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 321 of 321 are 100.00 pct identical to residues 1 to 321 of 321 from Escherichia coli K-12 Strain MG1655: B3184.


ensembl_gene_id: Z4547
symbol: rpmA
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L27; Residues 1 to 85 of 85 are 100.00 pct identical to residues 1 to 85 of 85 from Escherichia coli K-12 Strain MG1655: B3185; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: Z4549
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: Z4550
symbol: ispB
gene_biotype: protein_coding
description:
  Octaprenyl diphosphate synthase; Residues 1 to 323 of 323 are 99.69 pct identical to residues 1 to 323 of 323 from Escherichia coli K-12 Strain MG1655: B3187; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Z4551
symbol: nlp
gene_biotype: protein_coding
description:
  Regulatory factor of maltose metabolism; This protein is involved in positive regulation of the metabolism of sugars.


ensembl_gene_id: Z4552
symbol: murA
gene_biotype: protein_coding
description:
  First step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Z4553
symbol: yrbA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 89 of 89 are 100.00 pct identical to residues 1 to 89 of 89 from Escherichia coli K-12 Strain MG1655: B3190; Belongs to the BolA/IbaG family.


ensembl_gene_id: Z4554
symbol: yrbB
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 129 of 129 are 99.22 pct identical to residues 1 to 129 of 129 from Escherichia coli K-12 Strain MG1655: B3191.


ensembl_gene_id: Z4555
symbol: yrbC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 211 of 211 are 99.52 pct identical to residues 1 to 211 of 211 from Escherichia coli K-12 Strain MG1655: B3192.


ensembl_gene_id: Z4556
symbol: yrbD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Part of the ABC transporter complex MlaFEDB, which is involved in a phospholipid transport pathway that maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane. MlaD functions in substrate binding with strong affinity for phospholipids and modulates ATP hydrolytic activity of the complex.


ensembl_gene_id: Z4557
symbol: yrbE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Part of the ABC transporter complex MlaFEDB, which is involved in a phospholipid transport pathway that maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane. Probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: Z4558
symbol: yrbF
gene_biotype: protein_coding
description:
  Putative ATP-binding component of a transport system; Part of the ABC transporter complex MlaFEDB, which is involved in a phospholipid transport pathway that maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane. Responsible for energy coupling to the transport system.


ensembl_gene_id: Z4559
symbol: yrbG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 325 of 325 are 99.69 pct identical to residues 1 to 325 of 325 from Escherichia coli K-12 Strain MG1655: B3196.


ensembl_gene_id: Z4560
symbol: yrbH
gene_biotype: protein_coding
description:
  Putative isomerase; Involved in the biosynthesis of 3-deoxy-D-manno-octulosonate (KDO), a unique 8-carbon sugar component of lipopolysaccharides (LPSs). Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P) (By similarity).


ensembl_gene_id: Z4561
symbol: yrbI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.


ensembl_gene_id: Z4562
symbol: yrbK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.


ensembl_gene_id: Z4563
symbol: yhbN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.


ensembl_gene_id: Z4564
symbol: yhbG
gene_biotype: protein_coding
description:
  Putative ATP-binding component of a transport system; Part of the ABC transporter complex LptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. Probably responsible for energy coupling to the transport system (By similarity).


ensembl_gene_id: Z4565
symbol: rpoN
gene_biotype: protein_coding
description:
  RNA polymerase, sigma(54 or 60) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Z4566
symbol: yhbH
gene_biotype: protein_coding
description:
  Probable sigma-54 modulation protein; During stationary phase, promotes and stabilizes dimerization of 70S ribosomes by the ribosome modulation factor (RMF), leading to the formation of inactive 100S ribosomes.


ensembl_gene_id: Z4567
symbol: ptsN
gene_biotype: protein_coding
description:
  Phosphotransferase system enzyme IIA, regulates N metabolism; Residues 1 to 163 of 163 are 99.38 pct identical to residues 1 to 163 of 163 from Escherichia coli K-12 Strain MG1655: B3204.


ensembl_gene_id: Z4568
symbol: yhbJ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Modulates the synthesis of GlmS, by affecting the processing and stability of the regulatory small RNA GlmZ. When glucosamine-6- phosphate (GlcN6P) concentrations are high in the cell, RapZ binds GlmZ and targets it to cleavage by RNase E. Consequently, GlmZ is inactivated and unable to activate GlmS synthesis. Under low GlcN6P concentrations, RapZ is sequestered and inactivated by an other regulatory small RNA, GlmY, preventing GlmZ degradation and leading to synthesis of GlmS; Belongs to the RapZ-like family. RapZ subfamily.


ensembl_gene_id: Z4569
symbol: ptsO
gene_biotype: protein_coding
description:
  Phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr; Component of the phosphoenolpyruvate-dependent nitrogen- metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein NPr by enzyme I-Ntr. Phospho-NPr then transfers it to EIIA-Ntr. Could function in the transcriptional regulation of sigma-54 dependent operons in conjunction with the NPr (PtsO) and EIIA-Ntr (PtsN) proteins; Belongs  [...]


ensembl_gene_id: Z4570
symbol: yrbL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 210 of 210 are 99.04 pct identical to residues 1 to 210 of 210 from Escherichia coli K-12 Strain MG1655: B3207.


ensembl_gene_id: Z4571
symbol: mtgA
gene_biotype: protein_coding
description:
  Putative peptidoglycan enzyme; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: Z4573
symbol: yhbL
gene_biotype: protein_coding
description:
  Sigma cross-reacting protein 27A (SCRP-27A); Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate; Belongs to the peptidase C56 family.


ensembl_gene_id: Z4574
symbol: arcB
gene_biotype: protein_coding
description:
  Aerobic respiration sensor-response protein; Member of the two-component regulatory system ArcB/ArcA. Sensor-regulator protein for anaerobic repression of the arc modulon. Activates ArcA via a four-step phosphorelay. ArcB can also dephosphorylate ArcA by a reverse phosphorelay involving His-717 and Asp-576 (By similarity).


ensembl_gene_id: Z4575
symbol: yhcC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 309 of 309 are 100.00 pct identical to residues 1 to 309 of 309 from Escherichia coli K-12 Strain MG1655: B3211.


ensembl_gene_id: Z4576
symbol: gltB
gene_biotype: protein_coding
description:
  Glutamate synthase, large subunit; Residues 1 to 1517 of 1517 are 99.53 pct identical to residues 1 to 1517 of 1517 from Escherichia coli K-12 Strain MG1655: B3212.


ensembl_gene_id: Z4577
symbol: gltD
gene_biotype: protein_coding
description:
  Glutamate synthase, small subunit; Residues 1 to 472 of 472 are 99.36 pct identical to residues 1 to 472 of 472 from Escherichia coli K-12 Strain MG1655: B3213.


ensembl_gene_id: Z4578
symbol: yhcG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 349 of 349 are 90.13 pct identical to residues 1 to 375 of 375 from Escherichia coli K-12 Strain MG1655: B3220.


ensembl_gene_id: Z4579
symbol: yhcH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 154 of 154 are 96.10 pct identical to residues 1 to 154 of 154 from Escherichia coli K-12 Strain MG1655: B3221.


ensembl_gene_id: Z4580
symbol: yhcI
gene_biotype: protein_coding
description:
  Putative NAGC-like transcriptional regulator; Catalyzes the phosphorylation of N-acetylmannosamine (ManNAc) to ManNAc-6-P; Belongs to the ROK (NagC/XylR) family. NanK subfamily.


ensembl_gene_id: Z4581
symbol: yhcJ
gene_biotype: protein_coding
description:
  Putative enzyme; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).


ensembl_gene_id: Z4582
symbol: nanT
gene_biotype: protein_coding
description:
  Sialic acid transporter; Catalyzes the proton-dependent transport of sialic acid. Belongs to the major facilitator superfamily. Sialate:H(+) symporter (SHS) (TC 2.A.1.12) family.


ensembl_gene_id: Z4583
symbol: nanA
gene_biotype: protein_coding
description:
  N-acetylneuraminate lyase (aldolase); Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate.


ensembl_gene_id: Z4584
symbol: yhcK
gene_biotype: protein_coding
description:
  Putative FADA-type transcriptional regulator; Transcriptional repressor that controls expression of the genes required for the catabolism of sialic acids.


ensembl_gene_id: Z4585
symbol: dcuD
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 405 of 454 are 98.28 pct identical to residues 1 to 408 of 455 from Escherichia coli K-12 Strain MG1655: B3227.


ensembl_gene_id: Z4586
symbol: sspB
gene_biotype: protein_coding
description:
  Stringent starvation protein B; Seems to act in concert with SspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of SspB is not yet known (By similarity).


ensembl_gene_id: Z4587
symbol: sspA
gene_biotype: protein_coding
description:
  Regulator of transcription; Forms an equimolar complex with the RNA polymerase holoenzyme (RNAP) but not with the core enzyme.


ensembl_gene_id: Z4588
symbol: rpsI
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S9; Residues 1 to 130 of 130 are 100.00 pct identical to residues 1 to 130 of 130 from Escherichia coli K-12 Strain MG1655: B3230.


ensembl_gene_id: Z4589
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: Z4592
symbol: yhcB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 134 of 134 are 100.00 pct identical to residues 1 to 134 of 134 from Escherichia coli K-12 Strain MG1655: B3233; To H.influenzae HI_1628.


ensembl_gene_id: Z4593
symbol: degQ
gene_biotype: protein_coding
description:
  Serine endoprotease; Residues 1 to 455 of 455 are 99.78 pct identical to residues 1 to 455 of 455 from Escherichia coli K-12 Strain MG1655: B3234; Belongs to the peptidase S1C family.


ensembl_gene_id: Z4594
symbol: degS
gene_biotype: protein_coding
description:
  Protease; A site-1 protease (S1P) that cleaves the peptide bond between 'Val-148' and 'Ser-149' in RseA. Part of a regulated intramembrane proteolysis (RIP) cascade. When heat shock or other environmental stresses disrupt protein folding in the periplasm, DegS senses the accumulation of unassembled outer membrane porins (OMP) and then initiates RseA (anti sigma-E factor) degradation by cleaving its periplasmic domain, making it a substrate for subsequent cleavage by RseP. This cascade ultimately leads to the sigma-E-driven expression of a variety of factors dealing with folding stress  [...]


ensembl_gene_id: Z4597
symbol: yhcN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 104 of 104 are 100.00 pct identical to residues 1 to 104 of 104 from Escherichia coli K-12 Strain MG1655: B3238.


ensembl_gene_id: Z4598
symbol: yhcO
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 90 of 90 are 100.00 pct identical to residues 1 to 90 of 90 from Escherichia coli K-12 Strain MG1655: B3239; Belongs to the barstar family.


ensembl_gene_id: Z4599
symbol: yhcP
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Forms an efflux pump with AaeA. Could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell.


ensembl_gene_id: Z4601
symbol: yhcR
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 90 of 90 are 97.77 pct identical to residues 1 to 90 of 90 from Escherichia coli K-12 Strain MG1655: B3242; Belongs to the AaeX family.


ensembl_gene_id: Z4603
symbol: tldD
gene_biotype: protein_coding
description:
  Suppresses inhibitory activity of CsrA; Residues 1 to 481 of 481 are 99.37 pct identical to residues 1 to 481 of 481 from Escherichia coli K-12 Strain MG1655: B3244.


ensembl_gene_id: Z4604
symbol: yhdP
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 281 to 1266 of 1266 are 98.68 pct identical to residues 1 to 986 of 986 from Escherichia coli K-12 Strain MG1655: B3245.


ensembl_gene_id: Z4605
symbol: cafA
gene_biotype: protein_coding
description:
  Bundles of cytoplasmic filaments; Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure (By similarity).


ensembl_gene_id: Z4606
symbol: yhdE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Z4607
symbol: mreD
gene_biotype: protein_coding
description:
  Rod shape-determining protein; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins (By similarity); Belongs to the MreD family.


ensembl_gene_id: Z4609
symbol: mreC
gene_biotype: protein_coding
description:
  Rod shape-determining protein; Residues 1 to 367 of 367 are 99.45 pct identical to residues 1 to 367 of 367 from Escherichia coli K-12 Strain MG1655: B3250.


ensembl_gene_id: Z4610
symbol: mreB
gene_biotype: protein_coding
description:
  Regulator of ftsI, penicillin binding protein 3, septation function; Residues 1 to 367 of 367 are 100.00 pct identical to residues 1 to 367 of 367 from Escherichia coli K-12 Strain MG1655: B3251.


ensembl_gene_id: Z4611
symbol: yhdA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 646 of 646 are 99.53 pct identical to residues 1 to 646 of 646 from Escherichia coli K-12 Strain MG1655: B3252.


ensembl_gene_id: Z4612
symbol: yhdH
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Residues 1 to 324 of 324 are 99.69 pct identical to residues 1 to 324 of 324 from Escherichia coli K-12 Strain MG1655: B3253.


ensembl_gene_id: Z4613
symbol: Z4613
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 33 of 33 are 96.96 pct identical to residues 1 to 33 of 33 from Escherichia coli K-12 Strain MG1655: B3254.


ensembl_gene_id: Z4614
symbol: Z4614
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 39 of 39 are 61.53 pct identical to residues 102 to 140 of 211 from Escherichia coli K-12 Strain MG1655: B1972.


ensembl_gene_id: Z4615
symbol: accB
gene_biotype: protein_coding
description:
  acetylCoA carboxylase, BCCP subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Z4616
symbol: accC
gene_biotype: protein_coding
description:
  Acetyl CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Z4617
symbol: yhdT
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 80 of 80 are 98.75 pct identical to residues 1 to 80 of 80 from Escherichia coli K-12 Strain MG1655: B3257.


ensembl_gene_id: Z4618
symbol: panF
gene_biotype: protein_coding
description:
  Sodium/pantothenate symporter; Residues 1 to 485 of 485 are 100.00 pct identical to residues 1 to 485 of 485 from Escherichia coli K-12 Strain MG1655: B3258; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Z4619
symbol: prmA
gene_biotype: protein_coding
description:
  Methylase for 50S ribosomal subunit protein L11; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: Z4620
symbol: yhdG
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.


ensembl_gene_id: Z4621
symbol: fis
gene_biotype: protein_coding
description:
  Site-specific DNA inversion stimulation factor; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.


ensembl_gene_id: Z4622
symbol: yhdJ
gene_biotype: protein_coding
description:
  Putative methyltransferase; Residues 1 to 296 of 296 are 98.98 pct identical to residues 1 to 296 of 296 from Escherichia coli K-12 Strain MG1655: B3262; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: Z4623
symbol: yhdU
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 59 of 59 are 100.00 pct identical to residues 1 to 59 of 59 from Escherichia coli K-12 Strain MG1655: B3263.


ensembl_gene_id: Z4625
symbol: acrE
gene_biotype: protein_coding
description:
  Transmembrane protein affects septum formation and cell membrane permeability; Residues 1 to 385 of 385 are 99.74 pct identical to residues 1 to 385 of 385 from Escherichia coli K-12 Strain MG1655: B3265; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Z4626
symbol: acrF_1
gene_biotype: protein_coding
description:
  N-terminal fragment of integral transmembrane protein involved with acridine resistance; Residues 1 to 620 of 628 are 99.19 pct identical to residues 1 to 620 of 1034 from Escherichia coli K-12 Strain MG1655: B3266.


ensembl_gene_id: Z4627
symbol: acrF_2
gene_biotype: protein_coding
description:
  C-terminal fragment of integral transmembrane protein involved with acridine resistance; Residues 1 to 410 of 410 are 99.02 pct identical to residues 625 to 1034 of 1034 from Escherichia coli K-12 Strain MG1655: B3266.


ensembl_gene_id: Z4628
symbol: yhdV
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 73 of 73 are 100.00 pct identical to residues 1 to 73 of 73 from Escherichia coli K-12 Strain MG1655: B3267.


ensembl_gene_id: Z4629
symbol: yhdW
gene_biotype: protein_coding
description:
  Putative periplasmic binding transport protein; Probably part of the binding-protein-dependent transport system YdhWXYZ for an amino acid; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Z4630
symbol: yhdX
gene_biotype: protein_coding
description:
  Putative transport system permease protein; Residues 1 to 358 of 393 are 99.44 pct identical to residues 7 to 364 of 368 from Escherichia coli K-12 Strain MG1655: B3269.


ensembl_gene_id: Z4631
symbol: yhdY
gene_biotype: protein_coding
description:
  Putative transport system permease protein; Residues 1 to 368 of 368 are 98.91 pct identical to residues 1 to 368 of 368 from Escherichia coli K-12 Strain MG1655: B3270.


ensembl_gene_id: Z4632
symbol: yhdZ
gene_biotype: protein_coding
description:
  Putative ATP-binding component of a transport system; Residues 1 to 252 of 252 are 99.20 pct identical to residues 1 to 252 of 252 from Escherichia coli K-12 Strain MG1655: B3271.


ensembl_gene_id: Z4650
symbol: yrdA
gene_biotype: protein_coding
description:
  Putative transferase; Residues 1 to 256 of 256 are 99.21 pct identical to residues 1 to 256 of 256 from Escherichia coli K-12 Strain MG1655: B3279.


ensembl_gene_id: Z4651
symbol: yrdB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 85 of 85 are 97.64 pct identical to residues 1 to 85 of 85 from Escherichia coli K-12 Strain MG1655: B3280.


ensembl_gene_id: Z4652
symbol: aroE
gene_biotype: protein_coding
description:
  Dehydroshikimate reductase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: Z4653
symbol: yrdC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.


ensembl_gene_id: Z4654
symbol: yrdD
gene_biotype: protein_coding
description:
  Putative DNA topoisomerase; Residues 11 to 172 of 172 are 96.29 pct identical to residues 8 to 169 of 169 from Escherichia coli K-12 Strain MG1655: B3283.


ensembl_gene_id: Z4655
symbol: smg
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 157 of 157 are 97.45 pct identical to residues 1 to 157 of 157 from Escherichia coli K-12 Strain MG1655: B3284; Belongs to the Smg family.


ensembl_gene_id: Z4656
symbol: smf
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 248 of 374 are 98.38 pct identical to residues 1 to 248 of 253 from Escherichia coli K-12 Strain MG1655: B3286.


ensembl_gene_id: Z4657
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity); Belongs to the polypeptide deformylase family.


ensembl_gene_id: Z4658
symbol: fmt
gene_biotype: protein_coding
description:
  10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.


ensembl_gene_id: Z4659
symbol: sun
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.


ensembl_gene_id: Z4660
symbol: trkA
gene_biotype: protein_coding
description:
  Transport of potassium; Part of the constitutive potassium transport systems TrkG and TrkH. May regulate the transport activity of TrkG and TrkH systems. Binds to NAD(+) and NADH (By similarity).


ensembl_gene_id: Z4661
symbol: mscL
gene_biotype: protein_coding
description:
  Mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: Z4663
symbol: yhdN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 122 of 122 are 99.18 pct identical to residues 1 to 122 of 122 from Escherichia coli K-12 Strain MG1655: B3293.


ensembl_gene_id: Z4664
symbol: rplQ
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294.


ensembl_gene_id: Z4665
symbol: rpoA
gene_biotype: protein_coding
description:
  RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Z4666
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S4; One of two assembly initiator proteins for the 30S subunit, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. Protein S4 is also a translational repressor protein, it controls the translation of the alpha-operon (which codes for S13, S11, S4, RNA polymerase alpha subunit, and L17) by binding to its mRNA.


ensembl_gene_id: Z4667
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome (By similarity); Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Z4668
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the E.coli 70S ribosome in the initiation state it has been modeled to contact the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; bridge B1a is broken in the model with bound EF-G, while the protein-protein contacts between S13 and L5 in B1b change. Contacts the tRNAs in the A and P sites (By similarity); Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Z4669
symbol: rpmJ
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L36; Residues 1 to 38 of 38 are 100.00 pct identical to residues 1 to 38 of 38 from Escherichia coli K-12 Strain MG1655: B3299; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Z4670
symbol: prlA
gene_biotype: protein_coding
description:
  Putative ATPase subunit of translocase; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Z4671
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Z4672
symbol: rpmD
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L30; Residues 1 to 59 of 59 are 100.00 pct identical to residues 1 to 59 of 59 from Escherichia coli K-12 Strain MG1655: B3302; Belongs to the universal ribosomal protein uL30 family.


ensembl_gene_id: Z4673
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Z4674
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Z4675
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Z4676
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S8, and regulator; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Z4677
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: Z4678
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Z4679
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: Z4680
symbol: rplN
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Z4681
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Z4683
symbol: rpmC
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L29; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: Z4684
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Z4685
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (By similarity). Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Z4686
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).


ensembl_gene_id: Z4687
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Z4688
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Z4689
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Z4690
symbol: rplD
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L4, regulates expression of S10 operon; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. Forms part of the polypeptide exit tunnel. Belongs to the universal ribosomal protein uL4 family.


ensembl_gene_id: Z4691
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: Z4692
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Z4693
symbol: hopD
gene_biotype: protein_coding
description:
  Putative leader peptidase; Residues 1 to 155 of 155 are 92.90 pct identical to residues 1 to 155 of 155 from GenPept 118 : gi|3065825|gb|AAC14289.1| (AF058450) leader peptidase HopD [Escherichia coli]; Belongs to the peptidase A24 family.


ensembl_gene_id: Z4695
symbol: bfr
gene_biotype: protein_coding
description:
  Putative iron storage homoprotein, bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: Z4696
symbol: yheA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 64 of 64 are 100.00 pct identical to residues 1 to 64 of 64 from GenPept 118 : gi|3065823|gb|AAC14287.1| (AF058450) YheAp [Escherichia coli].


ensembl_gene_id: Z4697
symbol: tufA
gene_biotype: protein_coding
description:
  Protein chain elongation factor EF-Tu (duplicate of tufB); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Z4698
symbol: fusA
gene_biotype: protein_coding
description:
  GTP-binding protein chain elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation  [...]


ensembl_gene_id: Z4699
symbol: rpsG
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Z4700
symbol: rpsL
gene_biotype: protein_coding
description:
  30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.


ensembl_gene_id: Z4701
symbol: yheL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions.


ensembl_gene_id: Z4703
symbol: yheN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE.


ensembl_gene_id: Z4704
symbol: yheO
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 244 of 244 are 99.59 pct identical to residues 1 to 244 of 244 from Escherichia coli K-12 Strain MG1655: B3346.


ensembl_gene_id: Z4705
symbol: fkpA
gene_biotype: protein_coding
description:
  FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.


ensembl_gene_id: Z4706
symbol: slyX
gene_biotype: protein_coding
description:
  Host factor for lysis of phiX174 infection; Residues 1 to 72 of 72 are 100.00 pct identical to residues 1 to 72 of 72 from Escherichia coli K-12 Strain MG1655: B3348; Belongs to the SlyX family.


ensembl_gene_id: Z4707
symbol: slyD
gene_biotype: protein_coding
description:
  FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); Folding helper with both chaperone and peptidyl-prolyl cis- trans isomerase (PPIase) activities. Chaperone activity prevents aggregation of unfolded or partially folded proteins and promotes their correct folding. PPIases catalyze the cis-trans isomerization of Xaa- Pro bonds of peptides, which accelerates slow steps of protein folding and thus shortens the lifetime of intermediates. Both strategies lower the concentration of intermediates and increase the productivity and yield of the folding reaction. SlyD could be involved in [...]


ensembl_gene_id: Z4710
symbol: kefB
gene_biotype: protein_coding
description:
  K+ efflux; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.


ensembl_gene_id: Z4712
symbol: yheR
gene_biotype: protein_coding
description:
  Putative NAD(P)H oxidoreductase; Regulatory subunit of a potassium efflux system that confers protection against electrophiles. Required for full activity of KefB.


ensembl_gene_id: Z4713
symbol: yheS
gene_biotype: protein_coding
description:
  Putative ATP-binding component of a transport system; Genetic data indicate it may be involved in ribosome assembly or function.


ensembl_gene_id: Z4714
symbol: yheT
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 340 of 340 are 99.11 pct identical to residues 1 to 340 of 340 from Escherichia coli K-12 Strain MG1655: B3353.


ensembl_gene_id: Z4715
symbol: yheU
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 72 of 72 are 100.00 pct identical to residues 1 to 72 of 72 from Escherichia coli K-12 Strain MG1655: B3354; Belongs to the UPF0270 family.


ensembl_gene_id: Z4716
symbol: prkB
gene_biotype: protein_coding
description:
  Probable phosphoribulokinase; Residues 1 to 289 of 289 are 99.30 pct identical to residues 1 to 289 of 289 from Escherichia coli K-12 Strain MG1655: B3355.


ensembl_gene_id: Z4717
symbol: yhfA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 134 of 134 are 100.00 pct identical to residues 1 to 134 of 134 from Escherichia coli K-12 Strain MG1655: B3356.


ensembl_gene_id: Z4718
symbol: crp
gene_biotype: protein_coding
description:
  Cyclic AMP receptor protein; A global transcription regulator. Complexes with cyclic AMP (cAMP) which allosterically activates DNA binding to regulate transcription. It can act as an activator, repressor, coactivator or corepressor. Induces a severe bend in DNA. Acts as a negative regulator of its own synthesis as well as for adenylate cyclase (cyaA), which generates cAMP. Plays a major role in carbon catabolite repression (CCR) (By similarity).


ensembl_gene_id: Z4719
symbol: yhfK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 696 of 696 are 100.00 pct identical to residues 1 to 696 of 696 from Escherichia coli K-12 Strain MG1655: B3358.


ensembl_gene_id: Z4720
symbol: argD
gene_biotype: protein_coding
description:
  Acetylornithine delta-aminotransferase; Involved in both the arginine and lysine biosynthetic pathways.


ensembl_gene_id: Z4721
symbol: pabA
gene_biotype: protein_coding
description:
  P-aminobenzoate synthetase, component II; Residues 1 to 187 of 187 are 98.93 pct identical to residues 1 to 187 of 187 from Escherichia coli K-12 Strain MG1655: B3360.


ensembl_gene_id: Z4722
symbol: fic
gene_biotype: protein_coding
description:
  Induced in stationary phase, recognized by rpoS, affects cell division; Residues 1 to 200 of 200 are 99.50 pct identical to residues 1 to 200 of 200 from Escherichia coli K-12 Strain MG1655: B3361.


ensembl_gene_id: Z4723
symbol: yhfG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 55 of 55 are 100.00 pct identical to residues 1 to 55 of 55 from Escherichia coli K-12 Strain MG1655: B3362.


ensembl_gene_id: Z4724
symbol: ppiA
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase A (rotamase A); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity).


ensembl_gene_id: Z4725
symbol: yhfC
gene_biotype: protein_coding
description:
  Putative transport; Residues 1 to 393 of 393 are 99.74 pct identical to residues 1 to 393 of 393 from Escherichia coli K-12 Strain MG1655: B3364.


ensembl_gene_id: Z4726
symbol: nirB
gene_biotype: protein_coding
description:
  Nitrite reductase (NAD(P)H) subunit; Residues 1 to 847 of 847 are 99.76 pct identical to residues 1 to 847 of 847 from Escherichia coli K-12 Strain MG1655: B3365; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: Z4728
symbol: nirC
gene_biotype: protein_coding
description:
  Nitrite reductase; Residues 1 to 184 of 184 are 99.45 pct identical to residues 1 to 184 of 184 from Escherichia coli K-12 Strain MG1655: B3367.


ensembl_gene_id: Z4729
symbol: cysG
gene_biotype: protein_coding
description:
  Uroporphyrinogen III methylase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.


ensembl_gene_id: Z4730
symbol: yhfL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 55 of 55 are 100.00 pct identical to residues 1 to 55 of 55 from Escherichia coli K-12 Strain MG1655: B3369.


ensembl_gene_id: Z4731
symbol: yhfM
gene_biotype: protein_coding
description:
  Putative amino acid/amine transport protein; Is likely involved in the transport of fructoselysine and psicoselysine to the cytoplasm, where they are degraded.


ensembl_gene_id: Z4732
symbol: yhfN
gene_biotype: protein_coding
description:
  Putative transport protein; Catalyzes the reversible conversion of fructoselysine 6- phosphate to glucose 6-phosphate and lysine. Functions in a fructoselysine degradation pathway that allows E.coli to grow on fructoselysine or psicoselysine.


ensembl_gene_id: Z4733
symbol: frlC
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the reversible interconversion of fructoselysine with its C-3 epimer, psicoselysine. Allows E.coli to utilize psicoselysine for growth. Does not act on psicose or fructoselysine 6- phosphate; Belongs to the FrlC family.


ensembl_gene_id: Z4734
symbol: Z4734
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 111 of 111 are 98.18 pct identical to residues 1 to 110 of 261 from Escherichia coli K-12 Strain MG1655: B3374.


ensembl_gene_id: Z4735
symbol: frlD
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the ATP-dependent phosphorylation of fructoselysine to fructoselysine 6-phosphate. Functions in a fructoselysine degradation pathway that allows E.coli to grow on fructoselysine or psicoselysine. To a much lesser extenst, is also able to phosphorylate psicoselysine; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Z4736
symbol: yhfR
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; May regulate the transcription of the frlABCDR operon, involved in the utilization of fructoselysine and psicoselysine.


ensembl_gene_id: Z4737
symbol: trpS
gene_biotype: protein_coding
description:
  Tryptophan tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Z4738
symbol: gph
gene_biotype: protein_coding
description:
  Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.


ensembl_gene_id: Z4739
symbol: rpe
gene_biotype: protein_coding
description:
  D-ribulose-5-phosphate 3-epimerase; Catalyzes the reversible epimerization of D-ribulose 5- phosphate to D-xylulose 5-phosphate; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: Z4740
symbol: dam
gene_biotype: protein_coding
description:
  DNA adenine methylase; Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: Z4742
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.


ensembl_gene_id: Z4743
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Z4744
symbol: hofQ
gene_biotype: protein_coding
description:
  Putative transport portein; Residues 1 to 412 of 412 are 99.51 pct identical to residues 1 to 412 of 412 from Escherichia coli K-12 Strain MG1655: B3391.


ensembl_gene_id: Z4746
symbol: yrfA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 147 of 147 are 98.63 pct identical to residues 1 to 147 of 147 from Escherichia coli K-12 Strain MG1655: B3392.


ensembl_gene_id: Z4747
symbol: yrfB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 146 of 146 are 95.89 pct identical to residues 1 to 146 of 146 from Escherichia coli K-12 Strain MG1655: B3393.


ensembl_gene_id: Z4748
symbol: yrfC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 179 of 179 are 96.64 pct identical to residues 1 to 179 of 179 from Escherichia coli K-12 Strain MG1655: B3394.


ensembl_gene_id: Z4749
symbol: yrfD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 266 of 273 are 97.36 pct identical to residues 1 to 266 of 268 from Escherichia coli K-12 Strain MG1655: B3395.


ensembl_gene_id: Z4750
symbol: mrcA
gene_biotype: protein_coding
description:
  Peptidoglycan synthetase; Residues 1 to 858 of 858 are 99.76 pct identical to residues 1 to 858 of 858 from Escherichia coli K-12 Strain MG1655: B3396.


ensembl_gene_id: Z4751
symbol: yrfE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 186 of 186 are 99.46 pct identical to residues 1 to 186 of 186 from Escherichia coli K-12 Strain MG1655: B3397.


ensembl_gene_id: Z4752
symbol: yrfF
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Residues 1 to 711 of 711 are 99.57 pct identical to residues 1 to 711 of 711 from Escherichia coli K-12 Strain MG1655: B3398.


ensembl_gene_id: Z4753
symbol: yrfG
gene_biotype: protein_coding
description:
  Putative phosphatase; Residues 1 to 237 of 237 are 99.57 pct identical to residues 1 to 237 of 237 from Escherichia coli K-12 Strain MG1655: B3399.


ensembl_gene_id: Z4754
symbol: yrfH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome (By similarity).


ensembl_gene_id: Z4755
symbol: yrfI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: Z4756
symbol: yhgE
gene_biotype: protein_coding
description:
  Putative transport; Residues 1 to 574 of 574 are 95.81 pct identical to residues 1 to 574 of 574 from Escherichia coli K-12 Strain MG1655: B3402.


ensembl_gene_id: Z4758
symbol: pckA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.


ensembl_gene_id: Z4759
symbol: envZ
gene_biotype: protein_coding
description:
  Protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC; Residues 1 to 450 of 450 are 99.77 pct identical to residues 1 to 450 of 450 from Escherichia coli K-12 Strain MG1655: B3404.


ensembl_gene_id: Z4760
symbol: ompR
gene_biotype: protein_coding
description:
  DNA-binding dual transcriptional regulator OmpR; Member of the two-component regulatory system EnvZ/OmpR involved in osmoregulation (particularly of genes ompF and ompC) as well as other genes. Plays a central role in both acid and osmotic stress responses. Binds to the promoter of both ompC and ompF; at low osmolarity it activates ompF transcription, while at high osmolarity it represses ompF and activates ompC transcription.


ensembl_gene_id: Z4761
symbol: greB
gene_biotype: protein_coding
description:
  Transcription elongation factor and transcript cleavage; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.


ensembl_gene_id: Z4762
symbol: yhgF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 740 of 740 are 99.05 pct identical to residues 1 to 740 of 740 from Escherichia coli K-12 Strain MG1655: B3407.


ensembl_gene_id: Z4765
symbol: yhgG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; May function as a transcriptional regulator that controls feoABC expression.


ensembl_gene_id: Z4766
symbol: yhgA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 292 of 292 are 98.97 pct identical to residues 1 to 292 of 292 from Escherichia coli K-12 Strain MG1655: B3411.


ensembl_gene_id: Z4767
symbol: bioH
gene_biotype: protein_coding
description:
  Biotin biosynthesis; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.


ensembl_gene_id: Z4769
symbol: yhgI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.


ensembl_gene_id: Z4770
symbol: gntT
gene_biotype: protein_coding
description:
  High-affinity transport of gluconate / gluconate permease; Residues 1 to 438 of 438 are 98.85 pct identical to residues 1 to 437 of 437 from Escherichia coli K-12 Strain MG1655: B3415.


ensembl_gene_id: Z4771
symbol: malQ
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase (amylomaltase); Residues 1 to 694 of 694 are 98.84 pct identical to residues 1 to 694 of 694 from Escherichia coli K-12 Strain MG1655: B3416.


ensembl_gene_id: Z4772
symbol: malP
gene_biotype: protein_coding
description:
  Maltodextrin phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: Z4774
symbol: malT
gene_biotype: protein_coding
description:
  Positive regulator of mal regulon; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box.


ensembl_gene_id: Z4776
symbol: Orf-12
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 76 of 94 are 40.78 pct identical to residues 64 to 139 of 158 from GenPept 118 : gi|2078067|emb|CAB08500.1| (Z95210) hypothetical protein Rv0918 [Mycobacterium tuberculosis].


ensembl_gene_id: Z4777
symbol: Orf-13
gene_biotype: protein_coding
description:
  Orf; Residues 2 to 155 of 161 are 39.61 pct identical to residues 3 to 154 of 166 from GenPept 118 : gi|2078068|emb|CAB08501.1| (Z95210) hypothetical protein Rv0919 [Mycobacterium tuberculosis].


ensembl_gene_id: Z4778
symbol: rtcA
gene_biotype: protein_coding
description:
  Putative 3' terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity).


ensembl_gene_id: Z4779
symbol: rtcB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 408 of 408 are 99.01 pct identical to residues 1 to 408 of 408 from Escherichia coli K-12 Strain MG1655: B3421.


ensembl_gene_id: Z4780
symbol: rtcR
gene_biotype: protein_coding
description:
  Putative 2-component regulator; Residues 1 to 532 of 532 are 98.49 pct identical to residues 1 to 532 of 532 from Escherichia coli K-12 Strain MG1655: B3422.


ensembl_gene_id: Z4781
symbol: glpR
gene_biotype: protein_coding
description:
  Repressor of the glp operon; Residues 1 to 252 of 252 are 99.60 pct identical to residues 1 to 252 of 252 from Escherichia coli K-12 Strain MG1655: B3423.


ensembl_gene_id: Z4785
symbol: glpE
gene_biotype: protein_coding
description:
  Protein of glp regulon; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.


ensembl_gene_id: Z4786
symbol: glpD
gene_biotype: protein_coding
description:
  Sn-glycerol-3-phosphate dehydrogenase (aerobic); Residues 1 to 501 of 501 are 98.80 pct identical to residues 1 to 501 of 501 from Escherichia coli K-12 Strain MG1655: B3426; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Z4788
symbol: Orf-14
gene_biotype: protein_coding
description:
  Orf; Residues 133 to 319 of 330 are 32.08 pct identical to residues 98 to 269 of 278 from GenPept 118 : gi|2622859|gb|AAB86198.1| (AE000929) phosphate-binding protein PstS homolog [Methanobacterium thermoautotrophicum].


ensembl_gene_id: Z4789
symbol: Orf-15
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 74 of 502 are 83.78 pct identical to residues 4 to 77 of 97 from Escherichia coli K-12 Strain MG1655: B3427.


ensembl_gene_id: Z4790
symbol: glgP
gene_biotype: protein_coding
description:
  Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: Z4792
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc.


ensembl_gene_id: Z4794
symbol: glgX
gene_biotype: protein_coding
description:
  Part of glycogen operon, a glycosyl hydrolase, debranching enzyme; Removes maltotriose and maltotetraose chains that are attached by 1,6-alpha-linkage to the limit dextrin main chain, generating a debranched limit dextrin.


ensembl_gene_id: Z4796
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: Z4797
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Z4798
symbol: yhgN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 197 of 197 are 100.00 pct identical to residues 1 to 197 of 197 from Escherichia coli K-12 Strain MG1655: B3434.


ensembl_gene_id: Z4799
symbol: Z4799
gene_biotype: protein_coding
description:
  Putative DNA processing protein; Residues 108 to 372 of 431 are 30.29 pct identical to residues 64 to 324 of 395 from GenPept 118 : gi|7378929|emb|CAB83472.1| (AL162752) DprA homolog [Neisseria meningitidis].


ensembl_gene_id: Z4801
symbol: Z4801
gene_biotype: protein_coding
description:
  Putative ATP-dependent DNA helicase (together with adjacent 3 orfs); Residues 1 to 269 of 324 are 31.01 pct identical to residues 337 to 619 of 719 from GenPept 118 : gi|3036880|emb|CAA18513.1| (AL022374) SC5B8.05, probable ATP-dependent DNA helicase.


ensembl_gene_id: Z4802
symbol: Z4802
gene_biotype: protein_coding
description:
  Putative ATP-dependent DNA helicase (together with adjacent 3 orfs); Residues 1 to 129 of 129 are 49.61 pct identical to residues 213 to 334 of 719 from GenPept 118 : gi|3036880|emb|CAA18513.1| (AL022374) SC5B8.05, probable ATP-dependent DNA helicase.


ensembl_gene_id: Z4803
symbol: Z4803
gene_biotype: protein_coding
description:
  Putative ATP-dependent DNA helicase (together with adjacent 3 orfs); Residues 6 to 171 of 202 are 60.71 pct identical to residues 10 to 177 of 719 from GenPept 118 : gi|3036880|emb|CAA18513.1| (AL022374) SC5B8.05, probable ATP-dependent DNA helicase.


ensembl_gene_id: Z4804
symbol: gntU
gene_biotype: protein_coding
description:
  Low affinity gluconate permease; Part of the gluconate utilization system Gnt-I; low-affinity intake of gluconate; Belongs to the GntP permease family.


ensembl_gene_id: Z4805
symbol: gntK
gene_biotype: protein_coding
description:
  Gluconokinase 2, thermoresistant; Residues 1 to 162 of 162 are 100.00 pct identical to residues 1 to 162 of 162 from Escherichia coli K-12 Strain MG1655: B3437.


ensembl_gene_id: Z4806
symbol: gntR
gene_biotype: protein_coding
description:
  Regulator of gluconate (gnt) operon; Residues 1 to 294 of 321 are 99.31 pct identical to residues 11 to 304 of 313 from Escherichia coli K-12 Strain MG1655: B3438.


ensembl_gene_id: Z4807
symbol: yhhW
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Has quercetin 2,3-dioxygenase activity in vitro. Its physiological role is unknown; however, may provide a mechanism that would avoid inhibition of key cellular proteins, such as DNA gyrase, by quercetin (By similarity); Belongs to the pirin family.


ensembl_gene_id: Z4808
symbol: yhhX
gene_biotype: protein_coding
description:
  Putative regulator; Residues 1 to 345 of 345 are 99.42 pct identical to residues 1 to 345 of 345 from Escherichia coli K-12 Strain MG1655: B3440.


ensembl_gene_id: Z4809
symbol: yhhY
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 158 of 158 are 96.83 pct identical to residues 5 to 162 of 162 from Escherichia coli K-12 Strain MG1655: B3441.


ensembl_gene_id: Z4813
symbol: ggt
gene_biotype: protein_coding
description:
  Gamma-glutamyltranspeptidase; Residues 1 to 581 of 581 are 98.27 pct identical to residues 1 to 580 of 580 from Escherichia coli K-12 Strain MG1655: B3447.


ensembl_gene_id: Z4815
symbol: yhhA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 146 of 146 are 99.31 pct identical to residues 1 to 146 of 146 from Escherichia coli K-12 Strain MG1655: B3448.


ensembl_gene_id: Z4817
symbol: ugpQ
gene_biotype: protein_coding
description:
  Glycerophosphodiester phosphodiesterase, cytosolic; Residues 1 to 247 of 247 are 97.97 pct identical to residues 1 to 247 of 247 from Escherichia coli K-12 Strain MG1655: B3449.


ensembl_gene_id: Z4818
symbol: ugpC
gene_biotype: protein_coding
description:
  ATP-binding component of sn-glycerol 3-phosphate transport system; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.


ensembl_gene_id: Z4819
symbol: ugpE
gene_biotype: protein_coding
description:
  Sn-glycerol 3-phosphate transport system, integral membrane protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: Z4822
symbol: ugpB
gene_biotype: protein_coding
description:
  Sn-glycerol 3-phosphate transport system; sn-glycerol-3-phosphate and glycerophosphoryl diester-binding protein interacts with the binding protein-dependent transport system UgpACE.


ensembl_gene_id: Z4824
symbol: livF
gene_biotype: protein_coding
description:
  ATP-binding component of leucine transport; Residues 1 to 241 of 241 are 99.58 pct identical to residues 1 to 241 of 241 from Escherichia coli K-12 Strain MG1655: B3454; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Z4825
symbol: livG
gene_biotype: protein_coding
description:
  ATP-binding component of high-affinity branched-chain amino acid transport system; Component of the leucine-specific transport system.


ensembl_gene_id: Z4826
symbol: livM
gene_biotype: protein_coding
description:
  High-affinity branched-chain amino acid transport; Residues 1 to 425 of 425 are 99.52 pct identical to residues 1 to 425 of 425 from Escherichia coli K-12 Strain MG1655: B3456; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Z4827
symbol: livH
gene_biotype: protein_coding
description:
  High-affinity branched-chain amino acid transport system; Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane (By similarity); Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.


ensembl_gene_id: Z4829
symbol: livK
gene_biotype: protein_coding
description:
  High-affinity leucine-specific transport system; Residues 1 to 369 of 369 are 99.72 pct identical to residues 1 to 369 of 369 from Escherichia coli K-12 Strain MG1655: B3458.


ensembl_gene_id: Z4831
symbol: yhhK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.


ensembl_gene_id: Z4832
symbol: Orf-19
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 175 of 175 are 61.71 pct identical to residues 1 to 175 of 176 from GenPept 118 : gi|6009455|dbj|BAA84914.1| (AB024946) orf79 [Escherichia coli].


ensembl_gene_id: Z4833
symbol: Orf-20
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 86 of 88 are 70.93 pct identical to residues 7 to 92 of 95 from GenPept 118 : gi|6009456|dbj|BAA84915.1| (AB024946) orf80 [Escherichia coli].


ensembl_gene_id: Z4834
symbol: livJ
gene_biotype: protein_coding
description:
  High-affinity amino acid transport system; This protein is a component of the leucine, isoleucine, valine, (threonine) transport system, which is one of the two periplasmic binding protein-dependent transport systems of the high- affinity transport of the branched-chain amino acids; Belongs to the leucine-binding protein family.


ensembl_gene_id: Z4835
symbol: rpoH
gene_biotype: protein_coding
description:
  RNA polymerase, sigma(32) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: Z4836
symbol: ftsX
gene_biotype: protein_coding
description:
  Cell division membrane protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: Z4837
symbol: ftsE
gene_biotype: protein_coding
description:
  ATP-binding component of a membrane-associated complex involved in cell division; Part of the ABC transporter FtsEX involved in cellular division. Important for assembly or stability of the septal ring.


ensembl_gene_id: Z4838
symbol: ftsY
gene_biotype: protein_coding
description:
  Cell division membrane protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: Z4839
symbol: yhhF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family.


ensembl_gene_id: Z4840
symbol: yhhL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 89 of 89 are 98.87 pct identical to residues 1 to 89 of 89 from Escherichia coli K-12 Strain MG1655: B3466.


ensembl_gene_id: Z4841
symbol: yhhM
gene_biotype: protein_coding
description:
  Putative receptor; Residues 1 to 119 of 119 are 97.47 pct identical to residues 1 to 119 of 119 from Escherichia coli K-12 Strain MG1655: B3467.


ensembl_gene_id: Z4842
symbol: yhhN
gene_biotype: protein_coding
description:
  Putative enzyme; Residues 1 to 208 of 208 are 99.51 pct identical to residues 1 to 208 of 208 from Escherichia coli K-12 Strain MG1655: B3468.


ensembl_gene_id: Z4843
symbol: zntA
gene_biotype: protein_coding
description:
  Zinc-transporting ATPase; Residues 1 to 732 of 732 are 98.90 pct identical to residues 1 to 732 of 732 from Escherichia coli K-12 Strain MG1655: B3469.


ensembl_gene_id: Z4844
symbol: yhhP
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Sulfur carrier protein involved in sulfur trafficking in the cell. Part of a sulfur-relay system required for 2-thiolation during synthesis of 2-thiouridine of the modified wobble base 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) in tRNA. Interacts with IscS and stimulates its cysteine desulfurase activity. Accepts an activated sulfur from IscS, which is then transferred to TusD, and thus determines the direction of sulfur flow from IscS to 2-thiouridine formation. Also appears to be involved in sulfur transfer for the biosynthesis of molybdopterin.


ensembl_gene_id: Z4845
symbol: yhhQ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: Z4846
symbol: dcrB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 203 of 203 are 100.00 pct identical to residues 1 to 203 of 203 from Escherichia coli K-12 Strain MG1655: B3472.


ensembl_gene_id: Z4847
symbol: yhhS
gene_biotype: protein_coding
description:
  Putative transport; Residues 1 to 419 of 419 are 99.04 pct identical to residues 1 to 419 of 419 from Escherichia coli K-12 Strain MG1655: B3473.


ensembl_gene_id: Z4848
symbol: yhhT
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 364 of 364 are 99.72 pct identical to residues 13 to 376 of 376 from Escherichia coli K-12 Strain MG1655: B3474.


ensembl_gene_id: Z4850
symbol: Z4850
gene_biotype: protein_coding
description:
  Putative O-methyltransferase; Residues 83 to 284 of 352 are 27.40 pct identical to residues 84 to 284 of 356 from GenPept 118 : gi|703439|gb|AAA99001.1| (L40425) carminomycin o-methyltransferase [Streptomyces peucetius].


ensembl_gene_id: Z4852
symbol: Z4852
gene_biotype: protein_coding
description:
  Putative phospholipid biosynthesis acyltransferase; Residues 5 to 250 of 273 are 33.60 pct identical to residues 1 to 243 of 252 from GenPept 118 : gi|7226953|gb|AAF42046.1| (AE002520) acyltransferase, putative [Neisseria meningitidis MC58].


ensembl_gene_id: Z4853
symbol: Z4853
gene_biotype: protein_coding
description:
  Putative acyl carrier protein; Residues 1 to 85 of 85 are 51.16 pct identical to residues 1 to 86 of 86 from GenPept 118 : gi|7226952|gb|AAF42045.1| (AE002520) acyl carrier protein, putative [Neisseria meningitidis MC58].


ensembl_gene_id: Z4854
symbol: acpP-2
gene_biotype: protein_coding
description:
  Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: Z4855
symbol: Z4855
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 64 to 189 of 193 are 51.96 pct identical to residues 17 to 143 of 144 from GenPept 118 : gi|7380586|emb|CAB85174.1| (AL162757) putative integral membrane protein [Neisseria meningitidis].


ensembl_gene_id: Z4856
symbol: Z4856
gene_biotype: protein_coding
description:
  Putative enzyme; Residues 129 to 396 of 453 are 27.27 pct identical to residues 117 to 374 of 411 from GenPept 118 : gi|2764724|emb|CAA05380.1| (AJ002398) p-coumaryl-CoA ligase [Rhodobacter sphaeroides].


ensembl_gene_id: Z4858
symbol: Z4858
gene_biotype: protein_coding
description:
  Putative enzyme; Residues 9 to 214 of 558 are 30.14 pct identical to residues 5 to 196 of 211 from GenPept 118 : gi|5457998|emb|CAB49488.1| (AJ248284) DOLICHYL-PHOSPHATE MANNOSE SYNTHASE RELATED PROTEIN [Pyrococcus abyssi].


ensembl_gene_id: Z4859
symbol: Orf-21
gene_biotype: protein_coding
description:
  Orf; Residues 12 to 122 of 140 are 31.30 pct identical to residues 12 to 126 of 142 from GenPept 118 : gi|6458619|gb|AAF10476.1|AE001942_8 (AE001942) conserved hypothetical protein [Deinococcus radiodurans].


ensembl_gene_id: Z4860
symbol: Z4860
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: Z4861
symbol: Z4861
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 218 to 401 of 772 are 21.02 pct identical to residues 166 to 356 of 746 from GenPept 118 : gi|5459097|emb|CAB50583.1| (AJ248288) Transport protein [Pyrococcus abyssi].


ensembl_gene_id: Z4863
symbol: fabF-2
gene_biotype: protein_coding
description:
  Putative 3-oxoacyl-[ACP] synthase; Residues 4 to 384 of 389 are 31.29 pct identical to residues 8 to 403 of 407 from GenPept 118 : gi|2808747|emb|CAA16177.1| (AL021409) 3-oxoacyl-[acyl-carrier-protein] synthase [Streptomyces coelicolor A3(2)]; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Z4864
symbol: Z4864
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 126 of 154 are 32.47 pct identical to residues 16 to 127 of 166 from GenPept 118 : gi|7226956|gb|AAF42049.1| (AE002520) hypothetical protein [Neisseria meningitidis MC58].


ensembl_gene_id: Z4865
symbol: fabG-2
gene_biotype: protein_coding
description:
  Putative beta-ketoacyl-ACP reductase; Residues 1 to 242 of 243 are 57.02 pct identical to residues 1 to 241 of 242 from GenPept 118 : gi|7226957|gb|AAF42050.1| (AE002520) 3-oxoacyl-(acyl-carrier-protein) reductase [Neisseria meningitidis MC58].


ensembl_gene_id: Z4866
symbol: fabF-3
gene_biotype: protein_coding
description:
  Putative beta-ketoacyl-ACP synthase; Residues 3 to 408 of 409 are 55.09 pct identical to residues 2 to 412 of 414 from GenPept 118 : gi|1651213|dbj|BAA13559.1| (D88189) beta-ketoacyl-ACP synthase IV [Actinobacillus actinomycetemcomitans]; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Z4867
symbol: acpT
gene_biotype: protein_coding
description:
  Hypothetical protein; May be involved in an alternative pathway for phosphopantetheinyl transfer and holo-ACP synthesis in E.coli. The native apo-protein substrate is unknown. Is able to functionally replace AcpS in vivo but only when expressed at high levels. Belongs to the P-Pant transferase superfamily. Gsp/Sfp/HetI/AcpT family.


ensembl_gene_id: Z4868
symbol: nikA
gene_biotype: protein_coding
description:
  Periplasmic binding protein for nickel; Residues 1 to 524 of 524 are 99.04 pct identical to residues 1 to 524 of 524 from Escherichia coli K-12 Strain MG1655: B3476.


ensembl_gene_id: Z4869
symbol: nikB
gene_biotype: protein_coding
description:
  Transport of nickel, membrane protein; Residues 1 to 314 of 314 are 99.36 pct identical to residues 1 to 314 of 314 from Escherichia coli K-12 Strain MG1655: B3477.


ensembl_gene_id: Z4870
symbol: nikC
gene_biotype: protein_coding
description:
  Transport of nickel, membrane protein; Involved in a nickel transport system, probably translocates nickel through the bacterial inner membrane.


ensembl_gene_id: Z4871
symbol: nikD
gene_biotype: protein_coding
description:
  ATP-binding protein of nickel transport system; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family.


ensembl_gene_id: Z4873
symbol: yhhG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel (By similarity).


ensembl_gene_id: Z4874
symbol: Z4874
gene_biotype: protein_coding
description:
  Putative regulator; Residues 14 to 248 of 251 are 28.08 pct identical to residues 5 to 237 of 240 from GenPept 118 : gi|1786950|gb|AAC73824.1| (AE000176) transcriptional regulator of succinylCoA synthetase operon [Escherichia coli].


ensembl_gene_id: Z4875
symbol: Z4875
gene_biotype: protein_coding
description:
  Putative phosphotransferase system enzyme subunit; Residues 1 to 151 of 157 are 33.98 pct identical to residues 1 to 152 of 160 from GenPept 118 : gi|4512375|dbj|BAA75339.1| (AB011837) phosphotransferase system (PTS) fructose-specific enzyme IIBC component [Bacillus halodurans].


ensembl_gene_id: Z4876
symbol: Z4876
gene_biotype: protein_coding
description:
  Putative phosphotransferase system enzyme subunit; Residues 1 to 92 of 93 are 35.48 pct identical to residues 1 to 93 of 94 from GenPept 118 : gi|1788409|gb|AAC75154.1| (AE000298) galactitol-specific enzyme IIB of phosphotransferase system [Escherichia coli].


ensembl_gene_id: Z4877
symbol: Z4877
gene_biotype: protein_coding
description:
  Putative phosphotransferase system enzyme subunit; Residues 22 to 432 of 462 are 45.89 pct identical to residues 5 to 415 of 419 from GenPept 118 : gi|4512376|dbj|BAA75340.1| (AB011837) PTS system galactitol-specific enzyme IIC component [Bacillus halodurans].


ensembl_gene_id: Z4878
symbol: fucK-2
gene_biotype: protein_coding
description:
  Putative xylulose kinase; Residues 4 to 499 of 502 are 23.34 pct identical to residues 2 to 501 of 501 from GenPept 118 : gi|149607|gb|AAA25259.1| (M57384) D-xylulose kinase [Lactobacillus pentosus].


ensembl_gene_id: Z4879
symbol: Z4879
gene_biotype: protein_coding
description:
  Putative phosphocarrier protein; Residues 1 to 79 of 89 are 40.50 pct identical to residues 1 to 79 of 88 from GenPept 118 : gi|529002|gb|AAA86048.1| (U12340) PTS HPr [Bacillus stearothermophilus].


ensembl_gene_id: Z4881
symbol: gatY-2
gene_biotype: protein_coding
description:
  Putative aldolase; Residues 1 to 272 of 286 are 38.04 pct identical to residues 1 to 275 of 287 from GenPept 118 : gi|1732204|gb|AAC44684.1| (U65015) putative aldolase [Vibrio furnissii].


ensembl_gene_id: Z4884
symbol: yhhJ
gene_biotype: protein_coding
description:
  Putative transporter; Residues 1 to 375 of 375 are 99.73 pct identical to residues 1 to 375 of 375 from Escherichia coli K-12 Strain MG1655: B3485.


ensembl_gene_id: Z4885
symbol: yhiH
gene_biotype: protein_coding
description:
  Putative ATP-binding component of a transport system, fragment 1; Residues 1 to 894 of 894 are 99.32 pct identical to residues 1 to 894 of 894 from Escherichia coli K-12 Strain MG1655: B3486.


ensembl_gene_id: Z4886
symbol: yhiI
gene_biotype: protein_coding
description:
  Putative membrane protein; Residues 1 to 355 of 355 are 99.43 pct identical to residues 1 to 355 of 355 from Escherichia coli K-12 Strain MG1655: B3487.


ensembl_gene_id: Z4887
symbol: yhiJ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 540 of 540 are 96.48 pct identical to residues 1 to 540 of 540 from Escherichia coli K-12 Strain MG1655: B3488.


ensembl_gene_id: Z4888
symbol: yheL-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 22 to 418 of 557 are 87.15 pct identical to residues 1 to 397 of 412 from Escherichia coli K-12 Strain MG1655: B3490.


ensembl_gene_id: Z4890
symbol: yhiM
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 383 of 383 are 99.47 pct identical to residues 1 to 383 of 383 from Escherichia coli K-12 Strain MG1655: B3491.


ensembl_gene_id: Z4891
symbol: yhiN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 399 of 400 are 99.24 pct identical to residues 1 to 399 of 400 from Escherichia coli K-12 Strain MG1655: B3492.


ensembl_gene_id: Z4893
symbol: pitA
gene_biotype: protein_coding
description:
  Low-affinity phosphate transport; Low-affinity inorganic phosphate transport. Can also transport arsenate (By similarity); Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family. Pit subfamily.


ensembl_gene_id: Z4894
symbol: yhiO
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 111 of 111 are 100.00 pct identical to residues 1 to 111 of 111 from Escherichia coli K-12 Strain MG1655: B3494.


ensembl_gene_id: Z4896
symbol: yhiP
gene_biotype: protein_coding
description:
  Putative transport protein; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpB subfamily.


ensembl_gene_id: Z4898
symbol: prlC
gene_biotype: protein_coding
description:
  Residues 1 to 680 of 680 are 99.85 pct identical to residues 1 to 680 of 680 from Escherichia coli K-12 Strain MG1655: B3498.


ensembl_gene_id: Z4900
symbol: gor
gene_biotype: protein_coding
description:
  Glutathione oxidoreductase; Residues 1 to 450 of 450 are 99.33 pct identical to residues 1 to 450 of 450 from Escherichia coli K-12 Strain MG1655: B3500.


ensembl_gene_id: Z4903
symbol: arsR
gene_biotype: protein_coding
description:
  Transcriptional repressor of chromosomal ars operon; Residues 1 to 117 of 117 are 94.87 pct identical to residues 1 to 117 of 117 from Escherichia coli K-12 Strain MG1655: B3501.


ensembl_gene_id: Z4904
symbol: arsB
gene_biotype: protein_coding
description:
  Arsenical pump membrane protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump (By similarity); Belongs to the ArsB family.


ensembl_gene_id: Z4905
symbol: arsC
gene_biotype: protein_coding
description:
  Arsenate reductase; Residues 1 to 141 of 141 are 98.58 pct identical to residues 1 to 141 of 141 from Escherichia coli K-12 Strain MG1655: B3503.


ensembl_gene_id: Z4907
symbol: Z4907
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 249 of 371 are 89.95 pct identical to residues 1 to 249 of 260 from Escherichia coli K-12 Strain MG1655: B3504.


ensembl_gene_id: Z4908
symbol: slp
gene_biotype: protein_coding
description:
  Outer membrane protein induced after carbon starvation; Residues 1 to 199 of 199 are 99.49 pct identical to residues 1 to 199 of 199 from Escherichia coli K-12 Strain MG1655: B3506.


ensembl_gene_id: Z4909
symbol: yhiF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; May act as a transcriptional regulator of dctA (By similarity). Could be involved in the regulation of the genes coding for the type III secretion system in enterohaemorragic strains.


ensembl_gene_id: Z4910
symbol: chuS
gene_biotype: protein_coding
description:
  Putative heme/hemoglobin transport protein; Residues 1 to 342 of 342 are 98.53 pct identical to residues 1 to 342 of 342 from GenPept 118 : gi|2967533|gb|AAC27810.1| (U64516) unknown [Shigella dysenteriae].


ensembl_gene_id: Z4911
symbol: chuA
gene_biotype: protein_coding
description:
  Outer membrane heme/hemoglobin receptor; Residues 1 to 660 of 660 are 100.00 pct identical to residues 1 to 660 of 660 from GenPept 118 : gi|1763009|gb|AAC44857.1| (U67920) ChuA [Escherichia coli].


ensembl_gene_id: Z4913
symbol: chuT
gene_biotype: protein_coding
description:
  Putative periplasmic binding protein; Residues 1 to 304 of 304 are 97.36 pct identical to residues 1 to 304 of 304 from GenPept 118 : gi|2967538|gb|AAC27815.1| (U64516) unknown [Shigella dysenteriae].


ensembl_gene_id: Z4914
symbol: chuW
gene_biotype: protein_coding
description:
  Putative oxygen independent coproporphyrinogen III oxidase; Residues 33 to 403 of 445 are 35.78 pct identical to residues 37 to 413 of 420 from GenPept 118 : gi|5106980|gb|AAD39908.1|AF119047_1 (AF119047) coproporphyrinogen oxidase homolog PhuW [Vibrio parahaemolyticus].


ensembl_gene_id: Z4915
symbol: chuX
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 164 of 164 are 98.17 pct identical to residues 1 to 164 of 164 from GenPept 118 : gi|2967537|gb|AAC27814.1| (U64516) unknown [Shigella dysenteriae].


ensembl_gene_id: Z4917
symbol: chuY
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 207 of 207 are 97.10 pct identical to residues 1 to 207 of 207 from GenPept 118 : gi|2967536|gb|AAC27813.1| (U64516) unknown [Shigella dysenteriae].


ensembl_gene_id: Z4918
symbol: chuU
gene_biotype: protein_coding
description:
  Putative permease of iron compound ABC transport system; Residues 13 to 330 of 330 are 99.37 pct identical to residues 1 to 318 of 318 from GenPept 118 : gi|2967535|gb|AAC27812.1| (U64516) unknown [Shigella dysenteriae]; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Z4919
symbol: hmuV
gene_biotype: protein_coding
description:
  Putative ATP-binding protein of ABC transport system; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Z4920
symbol: yhiD
gene_biotype: protein_coding
description:
  Putative transport ATPase; Residues 1 to 215 of 215 are 100.00 pct identical to residues 1 to 215 of 215 from Escherichia coli K-12 Strain MG1655: B3508.


ensembl_gene_id: Z4921
symbol: hdeB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Required for optimal acid stress protection, which is important for survival of enteric bacteria in the acidic environment of the host stomach. Exhibits a chaperone-like activity at acidic pH by preventing the aggregation of many different periplasmic proteins. Belongs to the HdeB family.


ensembl_gene_id: Z4922
symbol: hdeA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Required for optimal acid stress protection. Exhibits a chaperone-like activity only at low pH by suppressing non-specifically the aggregation of denaturated periplasmic proteins. Belongs to the HdeA family.


ensembl_gene_id: Z4923
symbol: hdeD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 190 of 190 are 100.00 pct identical to residues 1 to 190 of 190 from Escherichia coli K-12 Strain MG1655: B3511.


ensembl_gene_id: Z4925
symbol: yhiE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Regulates the expression of several genes involved in acid resistance. Required for the expression of gadA and gadBC, among others, regardless of media or growth conditions. Binds directly to the 20 bp GAD box found in the control regions of both loci (By similarity). Could be involved in the regulation of the genes coding for the type III secretion system in enterohaemorragic strains.


ensembl_gene_id: Z4926
symbol: yhiU
gene_biotype: protein_coding
description:
  Putative membrane protein; Part of the tripartite efflux system MdtEF-TolC, which confers resistance to various compounds.


ensembl_gene_id: Z4927
symbol: yhiV
gene_biotype: protein_coding
description:
  Putative transport system permease protein; Part of the tripartite efflux system MdtEF-TolC, which confers resistance to various compounds.


ensembl_gene_id: Z4928
symbol: yhiW
gene_biotype: protein_coding
description:
  Putative ARAC-type regulatory protein; Depending on the conditions (growth phase and medium), acts as a positive or negative regulator of gadA and gadBC. Repression occurs directly or via the repression of the expression of gadX. Activation occurs directly by the binding of GadW to the gadA and gadBC promoters (By similarity).


ensembl_gene_id: Z4929
symbol: yhiX
gene_biotype: protein_coding
description:
  Putative ARAC-type regulatory protein; Positively regulates the expression of about fifteen genes involved in acid resistance such as gadA, gadB and gadC. Depending on the conditions (growth phase and medium), can repress gadW (By similarity).


ensembl_gene_id: Z4931
symbol: yhjA
gene_biotype: protein_coding
description:
  Putative cytochrome C peroxidase (EC 1.11.1); Residues 1 to 465 of 465 are 99.56 pct identical to residues 1 to 465 of 465 from Escherichia coli K-12 Strain MG1655: B3518.


ensembl_gene_id: Z4932
symbol: treF
gene_biotype: protein_coding
description:
  Cytoplasmic trehalase; Hydrolyzes trehalose to glucose. Could be involved, in cells returning to low osmolarity conditions, in the utilization of the accumulated cytoplasmic trehalose, which was synthesized in response to high osmolarity.


ensembl_gene_id: Z4933
symbol: yhjB
gene_biotype: protein_coding
description:
  Putative regulator; Residues 1 to 200 of 200 are 99.50 pct identical to residues 1 to 200 of 200 from Escherichia coli K-12 Strain MG1655: B3520.


ensembl_gene_id: Z4934
symbol: yhjC
gene_biotype: protein_coding
description:
  Putative transcriptional regulator LYSR-type; Residues 1 to 323 of 323 are 98.14 pct identical to residues 1 to 323 of 323 from Escherichia coli K-12 Strain MG1655: B3521; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Z4935
symbol: yhjD
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 337 of 337 are 99.10 pct identical to residues 1 to 337 of 337 from Escherichia coli K-12 Strain MG1655: B3522.


ensembl_gene_id: Z4936
symbol: yhjE
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 440 of 440 are 99.77 pct identical to residues 1 to 440 of 440 from Escherichia coli K-12 Strain MG1655: B3523.


ensembl_gene_id: Z4937
symbol: yhjG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 691 of 691 are 99.71 pct identical to residues 1 to 691 of 691 from Escherichia coli K-12 Strain MG1655: B3524.


ensembl_gene_id: Z4939
symbol: yhjH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 255 of 255 are 99.60 pct identical to residues 2 to 256 of 256 from Escherichia coli K-12 Strain MG1655: B3525.


ensembl_gene_id: Z4940
symbol: kdgK
gene_biotype: protein_coding
description:
  Ketodeoxygluconokinase; Residues 1 to 382 of 382 are 99.21 pct identical to residues 1 to 382 of 382 from Escherichia coli K-12 Strain MG1655: B3526.


ensembl_gene_id: Z4941
symbol: yhjJ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 498 of 498 are 99.79 pct identical to residues 1 to 498 of 498 from Escherichia coli K-12 Strain MG1655: B3527.


ensembl_gene_id: Z4942
symbol: dctA
gene_biotype: protein_coding
description:
  Uptake of C4-dicarboxylic acids; Responsible for the aerobic transport of the dicarboxylates fumarate and malate and to a lesser extent succinate, from the periplasm across the inner membrane; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: Z4943
symbol: yhjK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 651 of 651 are 99.23 pct identical to residues 1 to 651 of 651 from Escherichia coli K-12 Strain MG1655: B3529.


ensembl_gene_id: Z4944
symbol: yhjL
gene_biotype: protein_coding
description:
  Putative oxidoreductase subunit; Required for maximal bacterial cellulose synthesis. Belongs to the AcsC/BcsC family.


ensembl_gene_id: Z4945
symbol: Z4945
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 134 of 166 are 99.19 pct identical to residues 20 to 143 of 1166 from Escherichia coli K-12 Strain MG1655: B3530.


ensembl_gene_id: Z4946
symbol: yhjM
gene_biotype: protein_coding
description:
  Putative endoglucanase; Hydrolyzes carboxymethylcellulose; Belongs to the glycosyl hydrolase 8 (cellulase D) family.


ensembl_gene_id: Z4947
symbol: yhjN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.


ensembl_gene_id: Z4948
symbol: yhjOP
gene_biotype: protein_coding
description:
  Putative cellulose synthase; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose, which is produced as an extracellular component for mechanical and chemical protection at the onset of the stationary phase, when the cells exhibit multicellular behavior (rdar morphotype). Coexpression of cellulose and thin aggregative fimbriae leads to a hydrophobic network with tightly packed cells embedded in a highly inert matrix (By similarity).


ensembl_gene_id: Z4949
symbol: Z4949
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 178 of 178 are 98.87 pct identical to residues 65 to 242 of 242 from Escherichia coli K-12 Strain MG1655: B3534.


ensembl_gene_id: Z4950
symbol: Z4950
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 10 to 65 of 65 are 100.00 pct identical to residues 2 to 57 of 242 from Escherichia coli K-12 Strain MG1655: B3534.


ensembl_gene_id: Z4951
symbol: yhjR
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 62 of 62 are 96.77 pct identical to residues 1 to 62 of 62 from Escherichia coli K-12 Strain MG1655: B3535.


ensembl_gene_id: Z4952
symbol: yhjS
gene_biotype: protein_coding
description:
  Putative protease; Residues 1 to 523 of 523 are 99.80 pct identical to residues 1 to 523 of 523 from Escherichia coli K-12 Strain MG1655: B3536.


ensembl_gene_id: Z4953
symbol: yhjT
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 62 of 62 are 100.00 pct identical to residues 1 to 62 of 62 from Escherichia coli K-12 Strain MG1655: B3537.


ensembl_gene_id: Z4954
symbol: yhjU
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 559 of 559 are 99.46 pct identical to residues 1 to 559 of 559 from Escherichia coli K-12 Strain MG1655: B3538.


ensembl_gene_id: Z4956
symbol: yhjV
gene_biotype: protein_coding
description:
  Putative transporter protein; Residues 1 to 423 of 423 are 99.05 pct identical to residues 1 to 423 of 423 from Escherichia coli K-12 Strain MG1655: B3539.


ensembl_gene_id: Z4957
symbol: dppF
gene_biotype: protein_coding
description:
  Putative ATP-binding component of dipeptide transport system; Residues 1 to 334 of 334 are 98.80 pct identical to residues 1 to 334 of 334 from Escherichia coli K-12 Strain MG1655: B3540; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Z4958
symbol: dppD
gene_biotype: protein_coding
description:
  Putative ATP-binding component of dipeptide transport system; Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system (By similarity); Belongs to the ABC transporter superfamily.


ensembl_gene_id: Z4959
symbol: dppC
gene_biotype: protein_coding
description:
  Dipeptide transport system permease protein 2; Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.


ensembl_gene_id: Z4960
symbol: dppB
gene_biotype: protein_coding
description:
  Dipeptide transport system permease protein 1; Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.


ensembl_gene_id: Z4961
symbol: dppA
gene_biotype: protein_coding
description:
  Dipeptide transport protein; Residues 1 to 535 of 535 are 99.62 pct identical to residues 1 to 535 of 535 from Escherichia coli K-12 Strain MG1655: B3544.


ensembl_gene_id: Z4964
symbol: yhjW
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 574 of 574 are 99.30 pct identical to residues 1 to 574 of 574 from Escherichia coli K-12 Strain MG1655: B3546.


ensembl_gene_id: Z4965
symbol: lpfE
gene_biotype: protein_coding
description:
  Putative fimbrial subunit; Part of the lpfABCC'DE fimbrial operon. LP fimbriae may participate in the interaction with eukaryotic cells by assisting in microcolony formation.


ensembl_gene_id: Z4966
symbol: lpfD
gene_biotype: protein_coding
description:
  Putative fimbrial protein; Part of the lpfABCC'DE fimbrial operon. LP fimbriae may participate in the interaction with eukaryotic cells by assisting in microcolony formation.


ensembl_gene_id: Z4967
symbol: lpfC
gene_biotype: protein_coding
description:
  Putative fimbrial usher; Part of the lpfABCC'DE fimbrial operon. LP fimbriae may participate in the interaction with eukaryotic cells by assisting in microcolony formation. Could be involved in the export and assembly of the fimbrial subunits across the outer membrane.


ensembl_gene_id: Z4969
symbol: lpfB
gene_biotype: protein_coding
description:
  Putative fimbrial chaperone; Residues 1 to 232 of 232 are 67.38 pct identical to residues 1 to 232 of 232 from GenPept 118 : gi|829372|gb|AAA73967.1| (U18559) lpfB gene product [Salmonella typhimurium].


ensembl_gene_id: Z4971
symbol: lpfA
gene_biotype: protein_coding
description:
  Putative major fimbrial subunit; Part of the lpfABCC'DE fimbrial operon. LP fimbriae may participate in the interaction with eukaryotic cells by assisting in microcolony formation.


ensembl_gene_id: Z4972
symbol: yhjX
gene_biotype: protein_coding
description:
  Putative resistance protein; Residues 1 to 399 of 400 are 98.99 pct identical to residues 1 to 399 of 402 from Escherichia coli K-12 Strain MG1655: B3547.


ensembl_gene_id: Z4973
symbol: yhjY
gene_biotype: protein_coding
description:
  Putative lipase; Residues 1 to 234 of 234 are 99.14 pct identical to residues 1 to 234 of 234 from Escherichia coli K-12 Strain MG1655: B3548.


ensembl_gene_id: Z4974
symbol: tag
gene_biotype: protein_coding
description:
  3-methyladenine DNA glycosylase I; Residues 1 to 187 of 187 are 98.39 pct identical to residues 1 to 187 of 187 from Escherichia coli K-12 Strain MG1655: B3549.


ensembl_gene_id: Z4975
symbol: yiaC
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 146 of 146 are 96.57 pct identical to residues 1 to 146 of 146 from Escherichia coli K-12 Strain MG1655: B3550.


ensembl_gene_id: Z4976
symbol: bisC
gene_biotype: protein_coding
description:
  Biotin sulfoxide reductase; Residues 1 to 739 of 739 are 98.78 pct identical to residues 1 to 739 of 739 from Escherichia coli K-12 Strain MG1655: B3551; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Z4977
symbol: yiaD
gene_biotype: protein_coding
description:
  Putative outer membrane protein; Residues 1 to 219 of 219 are 99.08 pct identical to residues 1 to 219 of 219 from Escherichia coli K-12 Strain MG1655: B3552.


ensembl_gene_id: Z4978
symbol: yiaE
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GhrB subfamily.


ensembl_gene_id: Z4979
symbol: yiaF
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 276 of 276 are 100.00 pct identical to residues 1 to 276 of 276 from Escherichia coli K-12 Strain MG1655: B3554.


ensembl_gene_id: Z4980
symbol: yiaG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 96 of 96 are 100.00 pct identical to residues 1 to 96 of 96 from Escherichia coli K-12 Strain MG1655: B3555.


ensembl_gene_id: Z4981
symbol: cspA
gene_biotype: protein_coding
description:
  Cold shock protein 7.4, transcriptional activator of hns; Binds to and stimulates the transcription of the CCAAT- containing, cold-shock-inducible promoters of the H-NS and GyrA proteins. Binds also to the inverted repeat 5'-ATTGG-3' (By similarity).


ensembl_gene_id: Z4982
symbol: stm
gene_biotype: protein_coding
description:
  Putative membrane permeability altering protein; Residues 21 to 69 of 70 are 55.10 pct identical to residues 1 to 49 of 50 from GenPept 118 : gi|4903131|dbj|BAA78016.1| (AB027308) post-segregation killing protein [Plasmid R64].


ensembl_gene_id: Z4983
symbol: glyS
gene_biotype: protein_coding
description:
  Glycine tRNA synthetase, beta subunit; Residues 1 to 689 of 689 are 99.56 pct identical to residues 1 to 689 of 689 from Escherichia coli K-12 Strain MG1655: B3559.


ensembl_gene_id: Z4984
symbol: glyQ
gene_biotype: protein_coding
description:
  Glycine tRNA synthetase, alpha subunit; Residues 1 to 303 of 303 are 99.66 pct identical to residues 1 to 303 of 303 from Escherichia coli K-12 Strain MG1655: B3560.


ensembl_gene_id: Z4986
symbol: yiaH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.


ensembl_gene_id: Z4987
symbol: yiaA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 146 of 146 are 100.00 pct identical to residues 1 to 146 of 146 from Escherichia coli K-12 Strain MG1655: B3562.


ensembl_gene_id: Z4988
symbol: yiaB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 116 of 117 are 98.27 pct identical to residues 1 to 116 of 117 from Escherichia coli K-12 Strain MG1655: B3563.


ensembl_gene_id: Z4989
symbol: xylB
gene_biotype: protein_coding
description:
  Xylulokinase; Residues 1 to 484 of 484 are 99.38 pct identical to residues 1 to 484 of 484 from Escherichia coli K-12 Strain MG1655: B3564.


ensembl_gene_id: Z4990
symbol: xylA
gene_biotype: protein_coding
description:
  D-xylose isomerase; Residues 1 to 440 of 440 are 99.54 pct identical to residues 1 to 440 of 440 from Escherichia coli K-12 Strain MG1655: B3565; Belongs to the xylose isomerase family.


ensembl_gene_id: Z4991
symbol: xylF
gene_biotype: protein_coding
description:
  Xylose binding protein transport system; Residues 1 to 330 of 330 are 99.39 pct identical to residues 1 to 330 of 330 from Escherichia coli K-12 Strain MG1655: B3566.


ensembl_gene_id: Z4992
symbol: xylG
gene_biotype: protein_coding
description:
  Putative ATP-binding protein of xylose transport system; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.


ensembl_gene_id: Z4993
symbol: xylH
gene_biotype: protein_coding
description:
  Putative xylose transport, membrane component; Part of the binding-protein-dependent transport system for D- xylose. Probably responsible for the translocation of the substrate across the membrane (By similarity); Belongs to the binding-protein-dependent transport system permease family. AraH/RbsC subfamily.


ensembl_gene_id: Z4995
symbol: bax
gene_biotype: protein_coding
description:
  Putative ATP-binding protein; Residues 1 to 274 of 274 are 99.27 pct identical to residues 1 to 274 of 274 from Escherichia coli K-12 Strain MG1655: B3570.


ensembl_gene_id: Z4996
symbol: malS
gene_biotype: protein_coding
description:
  Alpha-amylase; Residues 1 to 676 of 676 are 98.07 pct identical to residues 1 to 676 of 676 from Escherichia coli K-12 Strain MG1655: B3571.


ensembl_gene_id: Z4997
symbol: avtA
gene_biotype: protein_coding
description:
  Alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C; Residues 1 to 417 of 417 are 99.04 pct identical to residues 1 to 417 of 417 from Escherichia coli K-12 Strain MG1655: B3572.


ensembl_gene_id: Z4998
symbol: yiaI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 157 of 157 are 98.72 pct identical to residues 1 to 157 of 157 from Escherichia coli K-12 Strain MG1655: B3573.


ensembl_gene_id: Z5000
symbol: Z5000
gene_biotype: protein_coding
description:
  Putative regulatory protein; Residues 17 to 267 of 271 are 24.27 pct identical to residues 13 to 285 of 287 from GenPept 118 : gi|2633418|emb|CAB12922.1| (Z99109) alternate gene name: yuxC, yucF; similar to transcriptional regulator (AraC/XylS family) [Bacillus subtilis].


ensembl_gene_id: Z5001
symbol: Z5001
gene_biotype: protein_coding
description:
  Putative permease; Residues 20 to 462 of 466 are 42.21 pct identical to residues 6 to 446 of 468 from GenPept 118 : gi|7688349|emb|CAB89838.1| (AJ242516) hypothetical protein [Salmonella typhimurium].


ensembl_gene_id: Z5002
symbol: Orf-22
gene_biotype: protein_coding
description:
  Orf; Residues 17 to 648 of 656 are 37.32 pct identical to residues 28 to 618 of 620 from GenPept 118 : gi|4980778|gb|AAD35368.1|AE001710_3 (AE001710) hypothetical protein [Thermotoga maritima].


ensembl_gene_id: Z5003
symbol: yiaT
gene_biotype: protein_coding
description:
  Putative outer membrane protein; Residues 1 to 246 of 246 are 99.18 pct identical to residues 1 to 246 of 246 from Escherichia coli K-12 Strain MG1655: B3584.


ensembl_gene_id: Z5004
symbol: yiaU
gene_biotype: protein_coding
description:
  Putative transcriptional regulator LYSR-type; Residues 1 to 324 of 324 are 99.38 pct identical to residues 1 to 324 of 324 from Escherichia coli K-12 Strain MG1655: B3585; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Z5006
symbol: yiaV
gene_biotype: protein_coding
description:
  Putative membrane protein; Residues 1 to 378 of 378 are 99.47 pct identical to residues 1 to 378 of 378 from Escherichia coli K-12 Strain MG1655: B3586.


ensembl_gene_id: Z5007
symbol: yiaW
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 107 of 107 are 100.00 pct identical to residues 1 to 107 of 107 from Escherichia coli K-12 Strain MG1655: B3587.


ensembl_gene_id: Z5008
symbol: aldB
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase B (lactaldehyde dehydrogenase); Residues 1 to 542 of 542 are 99.26 pct identical to residues 1 to 542 of 542 from Escherichia coli K-12 Strain MG1655: B3588; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Z5009
symbol: Orf-23
gene_biotype: protein_coding
description:
  Orf; Residues 19 to 404 of 431 are 39.19 pct identical to residues 32 to 421 of 454 from GenPept 118 : gi|7227012|gb|AAF42100.1| (AE002525) conserved hypothetical protein [Neisseria meningitidis MC58].


ensembl_gene_id: Z5010
symbol: yiaY
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Residues 1 to 381 of 383 are 98.95 pct identical to residues 1 to 381 of 382 from Escherichia coli K-12 Strain MG1655: B3589.


ensembl_gene_id: Z5011
symbol: selB
gene_biotype: protein_coding
description:
  selenocysteinyl-tRNA-specific translation factor; Residues 1 to 614 of 614 are 98.37 pct identical to residues 1 to 614 of 614 from Escherichia coli K-12 Strain MG1655: B3590.


ensembl_gene_id: Z5012
symbol: selA
gene_biotype: protein_coding
description:
  Selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis; Belongs to the SelA family.


ensembl_gene_id: Z5013
symbol: yibF
gene_biotype: protein_coding
description:
  Putative S-transferase; Residues 1 to 202 of 202 are 99.50 pct identical to residues 1 to 202 of 202 from Escherichia coli K-12 Strain MG1655: B3592.


ensembl_gene_id: Z5014
symbol: rhsA
gene_biotype: protein_coding
description:
  rhsA protein in rhs element; Residues 1 to 1377 of 1377 are 97.45 pct identical to residues 1 to 1377 of 1377 from Escherichia coli K-12 Strain MG1655: B3593.


ensembl_gene_id: Z5015
symbol: yibA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 280 of 280 are 100.00 pct identical to residues 1 to 280 of 280 from Escherichia coli K-12 Strain MG1655: B3594.


ensembl_gene_id: Z5017
symbol: yibJ
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 231 of 312 are 97.40 pct identical to residues 3 to 233 of 233 from Escherichia coli K-12 Strain MG1655: B3595.


ensembl_gene_id: Z5018
symbol: yibG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 153 of 153 are 98.69 pct identical to residues 1 to 153 of 153 from Escherichia coli K-12 Strain MG1655: B3596.


ensembl_gene_id: Z5021
symbol: yibH
gene_biotype: protein_coding
description:
  Putative membrane protein; Residues 1 to 378 of 378 are 100.00 pct identical to residues 1 to 378 of 378 from Escherichia coli K-12 Strain MG1655: B3597.


ensembl_gene_id: Z5022
symbol: yibI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 120 of 120 are 99.16 pct identical to residues 1 to 120 of 120 from Escherichia coli K-12 Strain MG1655: B3598.


ensembl_gene_id: Z5023
symbol: mtlA
gene_biotype: protein_coding
description:
  PTS system, mannitol-specific enzyme IIABC components; Residues 1 to 637 of 637 are 99.37 pct identical to residues 1 to 637 of 637 from Escherichia coli K-12 Strain MG1655: B3599.


ensembl_gene_id: Z5024
symbol: mtlD
gene_biotype: protein_coding
description:
  Mannitol-1-phosphate dehydrogenase; Residues 1 to 382 of 382 are 98.42 pct identical to residues 1 to 382 of 382 from Escherichia coli K-12 Strain MG1655: B3600; Belongs to the mannitol dehydrogenase family.


ensembl_gene_id: Z5025
symbol: mtlR
gene_biotype: protein_coding
description:
  Repressor for mtl; Residues 1 to 195 of 195 are 99.48 pct identical to residues 1 to 195 of 195 from Escherichia coli K-12 Strain MG1655: B3601.


ensembl_gene_id: Z5026
symbol: yibL
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 120 of 120 are 100.00 pct identical to residues 1 to 120 of 120 from Escherichia coli K-12 Strain MG1655: B3602.


ensembl_gene_id: Z5029
symbol: ehaG
gene_biotype: protein_coding
description:
  Putative adhesin; Mediates aggregation, biofilm formation and adhesion to a range of extracellular matrix (ECM) proteins, such as fibronectin, fibrinogen, laminin and collagen types I, II, III, and V. Mediates adhesion to intestinal epithelial cells.


ensembl_gene_id: Z5030
symbol: lldP
gene_biotype: protein_coding
description:
  L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate. Seems to be driven by a proton motive force (By similarity).


ensembl_gene_id: Z5031
symbol: lldR
gene_biotype: protein_coding
description:
  Transcriptional regulator; Residues 1 to 258 of 258 are 99.61 pct identical to residues 1 to 258 of 258 from Escherichia coli K-12 Strain MG1655: B3604.


ensembl_gene_id: Z5032
symbol: lldD
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.


ensembl_gene_id: Z5033
symbol: yibK
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: Z5034
symbol: cysE
gene_biotype: protein_coding
description:
  Serine acetyltransferase; Residues 1 to 273 of 273 are 100.00 pct identical to residues 1 to 273 of 273 from Escherichia coli K-12 Strain MG1655: B3607; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: Z5035
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase (NAD+); Residues 1 to 339 of 339 are 100.00 pct identical to residues 1 to 339 of 339 from Escherichia coli K-12 Strain MG1655: B3608; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Z5036
symbol: secB
gene_biotype: protein_coding
description:
  Protein export; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: Z5037
symbol: grxC
gene_biotype: protein_coding
description:
  Glutaredoxin 3; The disulfide bond functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. In addition, it is also involved in reducing some disulfides in a coupled system with glutathione reductase (By similarity); Belongs to the glutaredoxin family.


ensembl_gene_id: Z5038
symbol: yibN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 143 of 143 are 100.00 pct identical to residues 1 to 143 of 143 from Escherichia coli K-12 Strain MG1655: B3611.


ensembl_gene_id: Z5039
symbol: yibO
gene_biotype: protein_coding
description:
  Putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: Z5040
symbol: yibP
gene_biotype: protein_coding
description:
  Putative membrane protein; Residues 1 to 427 of 427 are 100.00 pct identical to residues 1 to 427 of 427 from Escherichia coli K-12 Strain MG1655: B3613.


ensembl_gene_id: Z5041
symbol: yibQ
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 277 of 277 are 99.63 pct identical to residues 1 to 277 of 277 from Escherichia coli K-12 Strain MG1655: B3614.


ensembl_gene_id: Z5042
symbol: yibD
gene_biotype: protein_coding
description:
  Putative regulator; Residues 1 to 329 of 338 are 98.78 pct identical to residues 1 to 329 of 344 from Escherichia coli K-12 Strain MG1655: B3615.


ensembl_gene_id: Z5043
symbol: tdh
gene_biotype: protein_coding
description:
  Threonine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.


ensembl_gene_id: Z5044
symbol: kbl
gene_biotype: protein_coding
description:
  2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase); Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.


ensembl_gene_id: Z5045
symbol: htrL
gene_biotype: protein_coding
description:
  Involved in lipopolysaccharide biosynthesis; Residues 1 to 290 of 290 are 99.65 pct identical to residues 1 to 290 of 290 from Escherichia coli K-12 Strain MG1655: B3618.


ensembl_gene_id: Z5046
symbol: rfaD
gene_biotype: protein_coding
description:
  ADP-L-glycero-D-mannoheptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.


ensembl_gene_id: Z5047
symbol: rfaF
gene_biotype: protein_coding
description:
  ADP-heptose--lps heptosyltransferase II; Residues 1 to 348 of 348 are 99.42 pct identical to residues 1 to 348 of 348 from Escherichia coli K-12 Strain MG1655: B3620.


ensembl_gene_id: Z5048
symbol: rfaC
gene_biotype: protein_coding
description:
  Heptosyl transferase I; Residues 1 to 317 of 330 are 94.32 pct identical to residues 1 to 317 of 319 from Escherichia coli K-12 Strain MG1655: B3621.


ensembl_gene_id: Z5049
symbol: waaL
gene_biotype: protein_coding
description:
  Putative LPS biosynthesis enzyme; Residues 1 to 402 of 402 are 100.00 pct identical to residues 1 to 402 of 402 from GenPept 118 : gi|3821825|gb|AAC69661.1| (AF019745) lipid A-core:surface polymer ligase WaaL [Escherichia coli].


ensembl_gene_id: Z5050
symbol: waaD
gene_biotype: protein_coding
description:
  Putative LPS biosynthesis enzyme; Residues 1 to 380 of 380 are 99.73 pct identical to residues 1 to 380 of 380 from GenPept 118 : gi|3821826|gb|AAC69662.1| (AF019745) WaaD [Escherichia coli].


ensembl_gene_id: Z5051
symbol: waaJ
gene_biotype: protein_coding
description:
  Putative LPS biosynthesis enzyme; Residues 154 to 337 of 337 are 98.91 pct identical to residues 1 to 184 of 184 from GenPept 118 : gi|3821827|gb|AAC69663.1| (AF019745) UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase WaaJ [Escherichia coli].


ensembl_gene_id: Z5052
symbol: waaY
gene_biotype: protein_coding
description:
  Putative LPS biosynthesis protein; Residues 1 to 235 of 235 are 99.57 pct identical to residues 1 to 235 of 235 from GenPept 118 : gi|3821828|gb|AAC69664.1| (AF019745) WaaY [Escherichia coli].


ensembl_gene_id: Z5053
symbol: waaI
gene_biotype: protein_coding
description:
  Putative LPS biosynthesis enzyme; Residues 1 to 335 of 335 are 99.70 pct identical to residues 1 to 335 of 335 from GenPept 118 : gi|3821829|gb|AAC69665.1| (AF019745) UDP-galactose:(glucosyl) LPS alpha1,3-galactosyltransferase WaaI [Escherichia coli].


ensembl_gene_id: Z5054
symbol: waaP
gene_biotype: protein_coding
description:
  Putative LPS biosynthesis enzyme; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.


ensembl_gene_id: Z5055
symbol: rfaG
gene_biotype: protein_coding
description:
  Residues 1 to 374 of 374 are 90.10 pct identical to residues 1 to 374 of 374 from Escherichia coli K-12 Strain MG1655: B3631.


ensembl_gene_id: Z5056
symbol: waaQ
gene_biotype: protein_coding
description:
  Putative LPS biosynthesis enzyme; Residues 13 to 352 of 352 are 100.00 pct identical to residues 1 to 340 of 340 from GenPept 118 : gi|3821832|gb|AAC69668.1| (AF019745) WaaQ [Escherichia coli].


ensembl_gene_id: Z5057
symbol: kdtA
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of two 3-deoxy-D-manno-octulosonate (Kdo) residues from CMP-Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A.


ensembl_gene_id: Z5058
symbol: kdtB
gene_biotype: protein_coding
description:
  Putative enzyme of LPS biosynthesis; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: Z5059
symbol: mutM
gene_biotype: protein_coding
description:
  Formamidopyrimidine DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: Z5060
symbol: rpmG
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L33; Residues 1 to 55 of 55 are 100.00 pct identical to residues 1 to 55 of 55 from Escherichia coli K-12 Strain MG1655: B3636; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Z5061
symbol: rpmB
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L28; Residues 1 to 78 of 78 are 100.00 pct identical to residues 1 to 78 of 78 from Escherichia coli K-12 Strain MG1655: B3637; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Z5062
symbol: radC
gene_biotype: protein_coding
description:
  DNA repair protein; Residues 1 to 224 of 224 are 99.10 pct identical to residues 1 to 224 of 224 from Escherichia coli K-12 Strain MG1655: B3638; Belongs to the UPF0758 family. YicR subfamily.


ensembl_gene_id: Z5063
symbol: dfp
gene_biotype: protein_coding
description:
  Flavoprotein affecting synthesis of DNA and pantothenate metabolism; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: Z5064
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridinetriphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.


ensembl_gene_id: Z5065
symbol: ttk
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions.


ensembl_gene_id: Z5066
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: Z5068
symbol: rph
gene_biotype: protein_coding
description:
  RNase PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: Z5069
symbol: yicC
gene_biotype: protein_coding
description:
  Putative alpha helix protein; Residues 1 to 287 of 287 are 99.65 pct identical to residues 1 to 287 of 287 from Escherichia coli K-12 Strain MG1655: B3644.


ensembl_gene_id: Z5070
symbol: dinD
gene_biotype: protein_coding
description:
  DNA-damage-inducible protein; Residues 1 to 278 of 278 are 84.53 pct identical to residues 1 to 278 of 278 from Escherichia coli K-12 Strain MG1655: B3645.


ensembl_gene_id: Z5071
symbol: yicG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 223 of 223 are 99.55 pct identical to residues 1 to 223 of 223 from Escherichia coli K-12 Strain MG1655: B3646.


ensembl_gene_id: Z5073
symbol: yicF
gene_biotype: protein_coding
description:
  Putative enzyme; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily.


ensembl_gene_id: Z5075
symbol: rpoZ
gene_biotype: protein_coding
description:
  RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity).


ensembl_gene_id: Z5076
symbol: spoT
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase II; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp (By similarity); Belongs to the RelA/SpoT family.


ensembl_gene_id: Z5077
symbol: spoU
gene_biotype: protein_coding
description:
  Putative RNA methylase; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Z5078
symbol: recG
gene_biotype: protein_coding
description:
  DNA helicase, resolution of Holliday junctions, branch migration; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA). Has a role in constitutive stable DNA replication (CsdR) and R- loop formation (By similarity); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Z5081
symbol: gltS
gene_biotype: protein_coding
description:
  Glutamate transport; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.


ensembl_gene_id: Z5083
symbol: yicH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 569 of 569 are 98.76 pct identical to residues 1 to 569 of 569 from Escherichia coli K-12 Strain MG1655: B3655.


ensembl_gene_id: Z5084
symbol: yicI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 772 of 772 are 98.05 pct identical to residues 1 to 772 of 772 from Escherichia coli K-12 Strain MG1655: B3656; Belongs to the glycosyl hydrolase 31 family.


ensembl_gene_id: Z5085
symbol: yicJ
gene_biotype: protein_coding
description:
  Putative permease; Residues 1 to 479 of 479 are 99.58 pct identical to residues 1 to 479 of 479 from Escherichia coli K-12 Strain MG1655: B3657.


ensembl_gene_id: Z5087
symbol: intL
gene_biotype: protein_coding
description:
  Putative integrase for prophage 933L and the LEE pathogenicity island; Residues 1 to 393 of 393 are 100.00 pct identical to residues 1 to 393 of 393 from GenPept 118 : gi|3414871|gb|AAC31482.1| (AF071034) CP4-like integrase [Escherichia coli]; Belongs to the 'phage' integrase family.


ensembl_gene_id: Z5088
symbol: Z5088
gene_biotype: protein_coding
description:
  Unknown protein encoded by IS911 within prophage CP-933L; Residues 1 to 116 of 116 are 100.00 pct identical to residues 1 to 116 of 116 from GenPept 118 : gi|3414872|gb|AAC31483.1| (AF071034) L0004 [Escherichia coli].


ensembl_gene_id: Z5089
symbol: Z5089
gene_biotype: protein_coding
description:
  Putative transposase; Residues 9 to 225 of 225 are 100.00 pct identical to residues 1 to 217 of 217 from GenPept 118 : gi|3414874|gb|AAC31485.1| (AF071034) L0006 [Escherichia coli].


ensembl_gene_id: Z5091
symbol: Z5091
gene_biotype: protein_coding
description:
  Unknown protein encoded within prophage CP-933L; Residues 1 to 124 of 124 are 100.00 pct identical to residues 1 to 124 of 124 from GenPept 118 : gi|3414875|gb|AAC31486.1| (AF071034) L0007 [Escherichia coli].


ensembl_gene_id: Z5092
symbol: Z5092
gene_biotype: protein_coding
description:
  Unknown protein encoded within prophage CP-933L; Residues 1 to 163 of 163 are 100.00 pct identical to residues 1 to 163 of 163 from GenPept 118 : gi|3414876|gb|AAC31487.1| (AF071034) L0008 [Escherichia coli].


ensembl_gene_id: Z5093
symbol: Z5093
gene_biotype: protein_coding
description:
  Unknown protein encoded within prophage CP-933L; Residues 1 to 65 of 65 are 100.00 pct identical to residues 1 to 65 of 65 from GenPept 118 : gi|3414877|gb|AAC31488.1| (AF071034) L0009 [Escherichia coli].


ensembl_gene_id: Z5094
symbol: Z5094
gene_biotype: protein_coding
description:
  Unknown protein encoded within prophage CP-933L; Residues 1 to 113 of 113 are 100.00 pct identical to residues 1 to 113 of 113 from GenPept 118 : gi|3414878|gb|AAC31489.1| (AF071034) L0010 [Escherichia coli].


ensembl_gene_id: Z5095
symbol: Z5095
gene_biotype: protein_coding
description:
  Unknown protein encoded within prophage CP-933L; Residues 1 to 48 of 48 are 100.00 pct identical to residues 14 to 61 of 61 from GenPept 118 : gi|3414880|gb|AAC31491.1| (AF071034) L0012 [Escherichia coli].


ensembl_gene_id: Z5096
symbol: Z5096
gene_biotype: protein_coding
description:
  Unknown protein encoded by ISEc8 within prophage CP-933L; Residues 1 to 133 of 133 are 100.00 pct identical to residues 1 to 133 of 133 from GenPept 118 : gi|3414881|gb|AAC31492.1| (AF071034) L0013 [Escherichia coli].


ensembl_gene_id: Z5097
symbol: Z5097
gene_biotype: protein_coding
description:
  Unknown protein encoded by ISEc8 within prophage CP-933L; Residues 1 to 115 of 115 are 100.00 pct identical to residues 1 to 115 of 115 from GenPept 118 : gi|3661485|gb|AAC61716.1| (AF081284) Hp4 [Escherichia coli].


ensembl_gene_id: Z5098
symbol: Z5098
gene_biotype: protein_coding
description:
  Unknown protein encoded by ISEc8 within prophage CP-933L; Residues 1 to 512 of 512 are 100.00 pct identical to residues 1 to 512 of 512 from GenPept 118 : gi|3414883|gb|AAC31494.1| (AF071034) L0015 [Escherichia coli].


ensembl_gene_id: Z5100
symbol: espF
gene_biotype: protein_coding
description:
  espF; Residues 1 to 248 of 248 are 100.00 pct identical to residues 1 to 248 of 248 from GenPept 118 : gi|3414884|gb|AAC31495.1| (AF071034) L0016 [Escherichia coli].


ensembl_gene_id: Z5102
symbol: escG
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 92 of 92 are 100.00 pct identical to residues 1 to 92 of 92 from GenPept 118 : gi|3414885|gb|AAC31496.1| (AF071034) L0017 [Escherichia coli].


ensembl_gene_id: Z5103
symbol: escF
gene_biotype: protein_coding
description:
  escF; Residues 1 to 73 of 73 are 100.00 pct identical to residues 1 to 73 of 73 from GenPept 118 : gi|3941402|gb|AAC82362.1| (AF054421) EscF [Escherichia coli].


ensembl_gene_id: Z5104
symbol: cesD-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 135 of 135 are 100.00 pct identical to residues 1 to 135 of 135 from GenPept 118 : gi|3414887|gb|AAC31498.1| (AF071034) L0019 [Escherichia coli].


ensembl_gene_id: Z5105
symbol: espB
gene_biotype: protein_coding
description:
  Secreted protein EspB; Residues 1 to 312 of 312 are 99.67 pct identical to residues 1 to 312 of 312 from GenPept 118 : gi|3115186|emb|CAA73508.1| (Y13068) EspB protein [Escherichia coli].


ensembl_gene_id: Z5106
symbol: espD
gene_biotype: protein_coding
description:
  Secreted protein EspD; Residues 1 to 374 of 374 are 100.00 pct identical to residues 1 to 374 of 374 from GenPept 118 : gi|3414889|gb|AAC31500.1| (AF071034) L0021 [Escherichia coli].


ensembl_gene_id: Z5107
symbol: espA
gene_biotype: protein_coding
description:
  Secreted protein EspA; Residues 1 to 192 of 192 are 100.00 pct identical to residues 1 to 192 of 192 from GenPept 118 : gi|3414890|gb|AAC31501.1| (AF071034) L0022 [Escherichia coli].


ensembl_gene_id: Z5108
symbol: sepL
gene_biotype: protein_coding
description:
  sepL; Residues 1 to 351 of 351 are 100.00 pct identical to residues 1 to 351 of 351 from GenPept 118 : gi|3414891|gb|AAC31502.1| (AF071034) L0023 [Escherichia coli].


ensembl_gene_id: Z5109
symbol: escD
gene_biotype: protein_coding
description:
  escD; Residues 1 to 406 of 406 are 100.00 pct identical to residues 1 to 406 of 406 from GenPept 118 : gi|3414892|gb|AAC31503.1| (AF071034) L0024 [Escherichia coli].


ensembl_gene_id: Z5110
symbol: eae
gene_biotype: protein_coding
description:
  Intimin adherence protein; Necessary for the production of attaching and effacing lesions on tissue culture cells; Belongs to the intimin/invasin family.


ensembl_gene_id: Z5111
symbol: cesT
gene_biotype: protein_coding
description:
  Hypothetical protein; Chaperone for the type III secretion of Tir. Probably stabilizes the protein, prevents inappropriate protein- proteininteractions and aids in secretion (By similarity). Belongs to the CesT/SycH chaperone family.


ensembl_gene_id: Z5112
symbol: tir
gene_biotype: protein_coding
description:
  Putative translocated intimin receptor protein; Multifunctional protein that is required for efficient pedestal formation in host epithelial cells during infection. The extracellular region acts as a receptor for bacterial intimin, allowing the bacterium to attach tightly to the host-cell surface. Simultaneously, the intracellular region initiates a signaling cascade in the host cell, which leads to actin polymerization and formation of actin pedestals at the sites of bacterial adhesion. In strain EDL933, acts via the effector protein EspF(U), in a phosphotyrosine- and NCK- independent [...]


ensembl_gene_id: Z5113
symbol: map-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 203 of 203 are 100.00 pct identical to residues 1 to 203 of 203 from GenPept 118 : gi|3414896|gb|AAC31507.1| (AF071034) L0028 [Escherichia coli].


ensembl_gene_id: Z5114
symbol: cesF
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from GenPept 118 : gi|3414897|gb|AAC31508.1| (AF071034) L0029 [Escherichia coli].


ensembl_gene_id: Z5115
symbol: espH
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 168 of 168 are 100.00 pct identical to residues 1 to 168 of 168 from GenPept 118 : gi|3414898|gb|AAC31509.1| (AF071034) L0030 [Escherichia coli].


ensembl_gene_id: Z5116
symbol: sepQ
gene_biotype: protein_coding
description:
  sepQ; Residues 1 to 305 of 305 are 100.00 pct identical to residues 1 to 305 of 305 from GenPept 118 : gi|3414899|gb|AAC31510.1| (AF071034) L0031 [Escherichia coli].


ensembl_gene_id: Z5117
symbol: Z5117
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 91 of 91 are 100.00 pct identical to residues 1 to 91 of 91 from GenPept 118 : gi|3414900|gb|AAC31511.1| (AF071034) L0032 [Escherichia coli].


ensembl_gene_id: Z5118
symbol: Z5118
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 125 of 125 are 100.00 pct identical to residues 1 to 125 of 125 from GenPept 118 : gi|2865291|gb|AAC38384.1| (AF022236) Orf15 [Escherichia coli].


ensembl_gene_id: Z5119
symbol: escN
gene_biotype: protein_coding
description:
  escN; Residues 1 to 446 of 446 are 100.00 pct identical to residues 1 to 446 of 446 from GenPept 118 : gi|3414902|gb|AAC31513.1| (AF071034) L0034 [Escherichia coli].


ensembl_gene_id: Z5120
symbol: escV
gene_biotype: protein_coding
description:
  escV; Residues 1 to 675 of 675 are 100.00 pct identical to residues 1 to 675 of 675 from GenPept 118 : gi|3414903|gb|AAC31514.1| (AF071034) L0035 [Escherichia coli].


ensembl_gene_id: Z5121
symbol: mpc
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 117 of 117 are 100.00 pct identical to residues 1 to 117 of 117 from GenPept 118 : gi|2865288|gb|AAC38381.1| (AF022236) Orf12 [Escherichia coli].


ensembl_gene_id: Z5122
symbol: sepZ
gene_biotype: protein_coding
description:
  sepZ; Residues 1 to 99 of 99 are 100.00 pct identical to residues 1 to 99 of 99 from GenPept 118 : gi|3414905|gb|AAC31516.1| (AF071034) L0037 [Escherichia coli].


ensembl_gene_id: Z5123
symbol: rorf8
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 142 of 142 are 100.00 pct identical to residues 1 to 142 of 142 from GenPept 118 : gi|3414906|gb|AAC31517.1| (AF071034) L0038 [Escherichia coli].


ensembl_gene_id: Z5124
symbol: escJ
gene_biotype: protein_coding
description:
  escJ; Residues 1 to 190 of 190 are 100.00 pct identical to residues 1 to 190 of 190 from GenPept 118 : gi|2865286|gb|AAC38379.1| (AF022236) EscJ [Escherichia coli].


ensembl_gene_id: Z5125
symbol: sepD
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 151 of 151 are 100.00 pct identical to residues 1 to 151 of 151 from GenPept 118 : gi|3414908|gb|AAC31519.1| (AF071034) L0040 [Escherichia coli].


ensembl_gene_id: Z5126
symbol: escC
gene_biotype: protein_coding
description:
  escC; Residues 1 to 512 of 512 are 100.00 pct identical to residues 1 to 512 of 512 from GenPept 118 : gi|3414909|gb|AAC31520.1| (AF071034) L0041 [Escherichia coli].


ensembl_gene_id: Z5127
symbol: cesD
gene_biotype: protein_coding
description:
  cesD; Residues 1 to 151 of 151 are 100.00 pct identical to residues 1 to 151 of 151 from GenPept 118 : gi|2865283|gb|AAC38376.1| (AF022236) CesD [Escherichia coli].


ensembl_gene_id: Z5128
symbol: grlA
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 137 of 137 are 100.00 pct identical to residues 1 to 137 of 137 from GenPept 118 : gi|3414911|gb|AAC31522.1| (AF071034) L0043 [Escherichia coli].


ensembl_gene_id: Z5129
symbol: grlR
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 123 of 123 are 100.00 pct identical to residues 1 to 123 of 123 from GenPept 118 : gi|3414912|gb|AAC31523.1| (AF071034) L0044 [Escherichia coli].


ensembl_gene_id: Z5131
symbol: ipgF
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 152 of 152 are 100.00 pct identical to residues 1 to 152 of 152 from GenPept 118 : gi|3414913|gb|AAC31524.1| (AF071034) L0045 [Escherichia coli].


ensembl_gene_id: Z5132
symbol: escU
gene_biotype: protein_coding
description:
  escU; Residues 1 to 345 of 345 are 100.00 pct identical to residues 1 to 345 of 345 from GenPept 118 : gi|3414914|gb|AAC31525.1| (AF071034) L0046 [Escherichia coli].


ensembl_gene_id: Z5133
symbol: escT
gene_biotype: protein_coding
description:
  escT; Residues 1 to 258 of 258 are 100.00 pct identical to residues 1 to 258 of 258 from GenPept 118 : gi|3414915|gb|AAC31526.1| (AF071034) L0047 [Escherichia coli].


ensembl_gene_id: Z5134
symbol: escS
gene_biotype: protein_coding
description:
  escS; Residues 1 to 89 of 89 are 100.00 pct identical to residues 1 to 89 of 89 from GenPept 118 : gi|2865277|gb|AAC38370.1| (AF022236) EscS [Escherichia coli].


ensembl_gene_id: Z5135
symbol: escR
gene_biotype: protein_coding
description:
  escR; Residues 1 to 217 of 217 are 100.00 pct identical to residues 1 to 217 of 217 from GenPept 118 : gi|3414917|gb|AAC31528.1| (AF071034) L0049 [Escherichia coli].


ensembl_gene_id: Z5136
symbol: espL
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 204 of 204 are 99.50 pct identical to residues 28 to 231 of 231 from GenPept 118 : gi|3414918|gb|AAC31529.1| (AF071034) L0050 [Escherichia coli].


ensembl_gene_id: Z5137
symbol: Z5137
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 199 of 199 are 100.00 pct identical to residues 1 to 199 of 199 from GenPept 118 : gi|3414919|gb|AAC31530.1| (AF071034) L0051 [Escherichia coli].


ensembl_gene_id: Z5138
symbol: cesAB
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 107 of 107 are 100.00 pct identical to residues 1 to 107 of 107 from GenPept 118 : gi|2865273|gb|AAC38366.1| (AF022236) Orf3 [Escherichia coli].


ensembl_gene_id: Z5139
symbol: escE
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 72 of 72 are 100.00 pct identical to residues 1 to 72 of 72 from GenPept 118 : gi|2865272|gb|AAC38365.1| (AF022236) Orf2 [Escherichia coli].


ensembl_gene_id: Z5140
symbol: ler
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 129 of 129 are 100.00 pct identical to residues 1 to 129 of 129 from GenPept 118 : gi|3414922|gb|AAC31533.1| (AF071034) L0054 [Escherichia coli].


ensembl_gene_id: Z5142
symbol: espG
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 398 of 398 are 100.00 pct identical to residues 1 to 398 of 398 from GenPept 118 : gi|3414923|gb|AAC31534.1| (AF071034) L0055 [Escherichia coli].


ensembl_gene_id: Z5143
symbol: Z5143
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 272 of 272 are 100.00 pct identical to residues 1 to 272 of 272 from GenPept 118 : gi|3414924|gb|AAC31535.1| (AF071034) L0056 [Escherichia coli].


ensembl_gene_id: Z5146
symbol: yicL
gene_biotype: protein_coding
description:
  Putative permease transporter; Residues 1 to 307 of 307 are 98.37 pct identical to residues 1 to 307 of 307 from Escherichia coli K-12 Strain MG1655: B3660.


ensembl_gene_id: Z5147
symbol: nlpA
gene_biotype: protein_coding
description:
  Lipoprotein-28; Residues 1 to 272 of 272 are 97.42 pct identical to residues 1 to 272 of 272 from Escherichia coli K-12 Strain MG1655: B3661.


ensembl_gene_id: Z5149
symbol: yicM
gene_biotype: protein_coding
description:
  Putative transport protein; Involved in the efflux of purine ribonucleosides, such as guanosine, adenosine and especially inosine. Involved in the resistance to 6-mercaptopurine; Belongs to the major facilitator superfamily. DHA1 family. NepI (TC 2.A.1.2.26) subfamily.


ensembl_gene_id: Z5150
symbol: Orf-24
gene_biotype: protein_coding
description:
  Orf; Residues 1 to 111 of 117 are 35.59 pct identical to residues 3 to 120 of 122 from GenPept 118 : gi|7227149|gb|AAF42224.1| (AE002538) conserved hypothetical protein [Neisseria meningitidis MC58].


ensembl_gene_id: Z5151
symbol: Orf-25
gene_biotype: protein_coding
description:
  Orf; Residues 3 to 106 of 107 are 54.71 pct identical to residues 9 to 113 of 114 from GenPept 118 : gi|4928242|gb|AAD33486.1|AF131076_12 (AF131076) hypothetical protein [Coxiella burnetii].


ensembl_gene_id: Z5152
symbol: yicN
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 159 of 159 are 100.00 pct identical to residues 1 to 159 of 159 from Escherichia coli K-12 Strain MG1655: B3663.


ensembl_gene_id: Z5153
symbol: Z5153
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 109 of 109 are 97.24 pct identical to residues 362 to 470 of 470 from Escherichia coli K-12 Strain MG1655: B3664.


ensembl_gene_id: Z5154
symbol: Z5154
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 327 of 357 are 99.38 pct identical to residues 1 to 327 of 470 from Escherichia coli K-12 Strain MG1655: B3664.


ensembl_gene_id: Z5155
symbol: yicP
gene_biotype: protein_coding
description:
  Probable adenine deaminase (synthesis xanthine); Residues 1 to 588 of 588 are 98.97 pct identical to residues 1 to 588 of 588 from Escherichia coli K-12 Strain MG1655: B3665.


ensembl_gene_id: Z5156
symbol: uhpT
gene_biotype: protein_coding
description:
  Hexose phosphate transport protein; Mediates the exchange of external hexose 6-phosphate and internal inorganic phosphate; Belongs to the major facilitator superfamily. Organophosphate:Pi antiporter (OPA) (TC 2.A.1.4) family.


ensembl_gene_id: Z5157
symbol: uhpC
gene_biotype: protein_coding
description:
  Regulator of uhpT; Residues 1 to 440 of 440 are 99.54 pct identical to residues 1 to 440 of 440 from Escherichia coli K-12 Strain MG1655: B3667.


ensembl_gene_id: Z5158
symbol: uhpB
gene_biotype: protein_coding
description:
  Sensor histidine protein kinase phosphorylates UhpA; Residues 1 to 501 of 501 are 99.20 pct identical to residues 1 to 501 of 501 from Escherichia coli K-12 Strain MG1655: B3668.


ensembl_gene_id: Z5159
symbol: uhpA
gene_biotype: protein_coding
description:
  Response regulator, positive activator of uhpT transcription (sensor, uhpB); Part of the UhpABC signaling cascade that controls the expression of the hexose phosphate transporter UhpT. Activates the transcription of the uhpT gene. Acts by binding specifically to the uhpT promoter region.


ensembl_gene_id: Z5164
symbol: ilvN
gene_biotype: protein_coding
description:
  Acetolactate synthase I, valine sensitive, small subunit; Residues 1 to 96 of 96 are 100.00 pct identical to residues 1 to 96 of 96 from Escherichia coli K-12 Strain MG1655: B3670; Belongs to the acetolactate synthase small subunit family.


ensembl_gene_id: Z5165
symbol: ilvB
gene_biotype: protein_coding
description:
  Acetolactate synthase I,valine-sensitive, large subunit; Residues 1 to 562 of 562 are 98.57 pct identical to residues 1 to 562 of 562 from Escherichia coli K-12 Strain MG1655: B3671.


ensembl_gene_id: Z5166
symbol: ivbL
gene_biotype: protein_coding
description:
  ilvBN operon leader peptide; Residues 1 to 32 of 32 are 96.87 pct identical to residues 1 to 32 of 32 from Escherichia coli K-12 Strain MG1655: B3672.


ensembl_gene_id: Z5168
symbol: emrD
gene_biotype: protein_coding
description:
  2-module integral membrane pump; Residues 1 to 396 of 396 are 99.49 pct identical to residues 1 to 396 of 396 from Escherichia coli K-12 Strain MG1655: B3673.


ensembl_gene_id: Z5169
symbol: yidF
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Residues 1 to 165 of 165 are 96.36 pct identical to residues 1 to 165 of 165 from Escherichia coli K-12 Strain MG1655: B3674.


ensembl_gene_id: Z5170
symbol: yidG
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 120 of 120 are 100.00 pct identical to residues 1 to 120 of 120 from Escherichia coli K-12 Strain MG1655: B3675.


ensembl_gene_id: Z5171
symbol: yidH
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 115 of 115 are 100.00 pct identical to residues 1 to 115 of 115 from Escherichia coli K-12 Strain MG1655: B3676.


ensembl_gene_id: Z5172
symbol: yidI
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 149 of 149 are 97.31 pct identical to residues 1 to 149 of 149 from Escherichia coli K-12 Strain MG1655: B3677.


ensembl_gene_id: Z5173
symbol: yidJ
gene_biotype: protein_coding
description:
  Putative sulfatase; Residues 1 to 497 of 497 are 98.59 pct identical to residues 1 to 497 of 497 from Escherichia coli K-12 Strain MG1655: B3678.


ensembl_gene_id: Z5174
symbol: yidK
gene_biotype: protein_coding
description:
  Putative cotransporter; Residues 1 to 571 of 571 are 98.59 pct identical to residues 1 to 571 of 571 from Escherichia coli K-12 Strain MG1655: B3679; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Z5175
symbol: yidL
gene_biotype: protein_coding
description:
  Putative ARAC-type regulatory protein; Residues 1 to 307 of 307 are 99.34 pct identical to residues 1 to 307 of 307 from Escherichia coli K-12 Strain MG1655: B3680.


ensembl_gene_id: Z5177
symbol: glvA
gene_biotype: protein_coding
description:
  Putative 6-phospho-beta-glucosidase; Residues 1 to 440 of 440 are 75.05 pct identical to residues 1 to 441 of 441 from GenPept 118 : gi|2145152|gb|AAB63015.1| (U81185) MalH [Fusobacterium mortiferum].


ensembl_gene_id: Z5178
symbol: glvC
gene_biotype: protein_coding
description:
  Putative PTS component; Residues 1 to 370 of 540 are 99.45 pct identical to residues 86 to 455 of 455 from Escherichia coli K-12 Strain MG1655: B3683.


ensembl_gene_id: Z5179
symbol: yidP
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Residues 1 to 238 of 238 are 99.57 pct identical to residues 1 to 238 of 238 from Escherichia coli K-12 Strain MG1655: B3684.


ensembl_gene_id: Z5181
symbol: yidE
gene_biotype: protein_coding
description:
  Putative transport protein; Residues 1 to 561 of 561 are 100.00 pct identical to residues 1 to 561 of 561 from Escherichia coli K-12 Strain MG1655: B3685.


ensembl_gene_id: Z5182
symbol: ibpB
gene_biotype: protein_coding
description:
  Heat shock protein; Associates with aggregated proteins, together with IbpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress. Aggregated proteins bound to the IbpAB complex are more efficiently refolded and reactivated by the ATP-dependent chaperone systems ClpB and DnaK/DnaJ/GrpE. Its activity is ATP-independent.


ensembl_gene_id: Z5183
symbol: ibpA
gene_biotype: protein_coding
description:
  Heat shock protein; Associates with aggregated proteins, together with IbpB, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress. Aggregated proteins bound to the IbpAB complex are more efficiently refolded and reactivated by the ATP-dependent chaperone systems ClpB and DnaK/DnaJ/GrpE. Its activity is ATP-independent.


ensembl_gene_id: Z5184
symbol: yidQ
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 135 of 135 are 99.25 pct identical to residues 1 to 135 of 135 from Escherichia coli K-12 Strain MG1655: B3688.


ensembl_gene_id: Z5185
symbol: yidR
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 416 of 416 are 96.15 pct identical to residues 1 to 416 of 416 from Escherichia coli K-12 Strain MG1655: B3689.


ensembl_gene_id: Z5186
symbol: yidS
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 361 of 361 are 96.95 pct identical to residues 1 to 361 of 361 from Escherichia coli K-12 Strain MG1655: B3690; Belongs to the CbrA family.


ensembl_gene_id: Z5187
symbol: yidX
gene_biotype: protein_coding
description:
  Putative replicase; Residues 127 to 294 of 325 are 99.40 pct identical to residues 1 to 168 of 223 from GenPept 118 : gi|1790130|gb|AAC76719.1| (AE000446) putative replicase EC 2.7.- [Escherichia coli].


ensembl_gene_id: Z5188
symbol: yidA
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 270 of 270 are 99.62 pct identical to residues 1 to 270 of 270 from Escherichia coli K-12 Strain MG1655: B3697.


ensembl_gene_id: Z5189
symbol: yidB
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 135 of 135 are 98.51 pct identical to residues 1 to 135 of 135 from Escherichia coli K-12 Strain MG1655: B3698.


ensembl_gene_id: Z5190
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase subunit B, type II topoisomerase, ATPase activity; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultane [...]


ensembl_gene_id: Z5191
symbol: recF
gene_biotype: protein_coding
description:
  ssDNA and dsDNA binding, ATP binding; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity).


ensembl_gene_id: Z5192
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Z5193
symbol: dnaA
gene_biotype: protein_coding
description:
  DNA biosynthesis; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.


ensembl_gene_id: Z5194
symbol: rpmH
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L34; Residues 1 to 46 of 46 are 100.00 pct identical to residues 1 to 46 of 46 from Escherichia coli K-12 Strain MG1655: B3703; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: Z5195
symbol: rnpA
gene_biotype: protein_coding
description:
  RNase P, protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: Z5197
symbol: yidC
gene_biotype: protein_coding
description:
  60 KD inner-membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: Z5198
symbol: thdF
gene_biotype: protein_coding
description:
  GTP-binding protein in thiophene and furan oxidation; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: Z5200
symbol: Z5200
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 154 to 626 of 662 are 28.57 pct identical to residues 4 to 467 of 471 from GenPept 118 : gi|1788015|gb|AAC74791.1| (AE000267) orf, hypothetical protein [Escherichia coli].


ensembl_gene_id: Z5202
symbol: tnaL
gene_biotype: protein_coding
description:
  Tryptophanase leader peptide; Residues 1 to 24 of 24 are 100.00 pct identical to residues 1 to 24 of 24 from Escherichia coli K-12 Strain MG1655: B3707.


ensembl_gene_id: Z5203
symbol: tnaA
gene_biotype: protein_coding
description:
  Tryptophanase; Residues 1 to 476 of 476 are 99.78 pct identical to residues 1 to 476 of 476 from Escherichia coli K-12 Strain MG1655: B3708; Belongs to the beta-eliminating lyase family.


ensembl_gene_id: Z5204
symbol: tnaB
gene_biotype: protein_coding
description:
  Low affinity tryptophan permease; Involved in tryptophan transport across the cytoplasmic membrane. Plays a role in transporting tryptophan which is to be used catabolically (By similarity); Belongs to the amino acid/polyamine transporter 2 family. Mtr/TnaB/TyrP permease subfamily.


ensembl_gene_id: Z5205
symbol: yidY
gene_biotype: protein_coding
description:
  Putative transport protein; Confers resistance to chloramphenicol; Belongs to the major facilitator superfamily. DHA1 family. MdtL (TC 2.A.1.2.22) subfamily.


ensembl_gene_id: Z5207
symbol: yieE
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Residues 1 to 253 of 253 are 99.20 pct identical to residues 1 to 253 of 253 from Escherichia coli K-12 Strain MG1655: B3712.


ensembl_gene_id: Z5208
symbol: yieF
gene_biotype: protein_coding
description:
  Orf, hypothetical protein; Catalyzes the reduction of quinones. Acts by simultaneous two-electron transfer, avoiding formation of highly reactive semiquinone intermediates and producing quinols that promote tolerance of H(2)O(2). Quinone reduction is probably the primary biological role of ChrR. Can also reduce toxic chromate to insoluble and less toxic Cr(3+). Catalyzes the transfer of three electrons to Cr(6+) producing Cr(3+) and one electron to molecular oxygen without producing the toxic Cr(5+) species and only producing a minimal amount of reactive oxygen species (ROS). Chromate  [...]


ensembl_gene_id: Z5209
symbol: yieG
gene_biotype: protein_coding
description:
  Putative membrane / transport protein; Residues 1 to 445 of 445 are 99.32 pct identical to residues 1 to 445 of 445 from Escherichia coli K-12 Strain MG1655: B3714.


ensembl_gene_id: Z5210
symbol: yieH
gene_biotype: protein_coding
description:
  Putative phosphatase; Residues 1 to 220 of 221 are 85.00 pct identical to residues 1 to 220 of 221 from Escherichia coli K-12 Strain MG1655: B3715.


ensembl_gene_id: Z5211
symbol: espY4
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 81 to 768 of 802 are 21.26 pct identical to residues 1276 to 1894 of 1946 from GenPept 118 : gi|8052285|emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [Plasmodium falciparum].


ensembl_gene_id: Z5214
symbol: Z5214
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 368 to 793 of 794 are 21.63 pct identical to residues 745 to 1189 of 1334 from GenPept 118 : gi|8052290|emb|CAB39073.2| (AL034559) hypothetical protein, PFC1010w [Plasmodium falciparum].


ensembl_gene_id: Z5215
symbol: phoU
gene_biotype: protein_coding
description:
  Negative regulator for pho regulon and putative enzyme in phosphate metabolism; Part of the phosphate (Pho) regulon, which plays a key role in phosphate homeostasis. PhoU is essential for the repression of the Pho regulon at high phosphate conditions.


ensembl_gene_id: Z5216
symbol: pstB
gene_biotype: protein_coding
description:
  ATP-binding component of high-affinity phosphate-specific transport system; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


