# geneInfo

ensembl_gene_id: HMPREF3121_00005
symbol: OFU60392.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_00010
symbol: hpf
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: HMPREF3121_00015
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: HMPREF3121_00025
symbol: OFU60396.1
gene_biotype: protein_coding
description:
  HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00030
symbol: OFU60397.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00040
symbol: OFU60398.1
gene_biotype: protein_coding
description:
  Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00045
symbol: OFU60399.1
gene_biotype: protein_coding
description:
  Cl- channel, voltage gated; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_00050
symbol: OFU60417.1
gene_biotype: protein_coding
description:
  GTPase EngC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: HMPREF3121_00055
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: HMPREF3121_00060
symbol: OFU60400.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: HMPREF3121_00065
symbol: OFU60401.1
gene_biotype: protein_coding
description:
  aminoacyl-tRNA deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: HMPREF3121_00070
symbol: OFU60402.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: HMPREF3121_00080
symbol: whiB
gene_biotype: protein_coding
description:
  WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: HMPREF3121_00100
symbol: OFU60420.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.


ensembl_gene_id: HMPREF3121_00120
symbol: OFU60410.1
gene_biotype: protein_coding
description:
  TIGR02569 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00130
symbol: OFU60412.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: HMPREF3121_00135
symbol: OFU60413.1
gene_biotype: protein_coding
description:
  Ion channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00140
symbol: OFU60414.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00150
symbol: OFU60345.1
gene_biotype: protein_coding
description:
  Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00165
symbol: HMPREF3121_00165
gene_biotype: protein_coding
description:
  DUF4440 domain-containing protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00180
symbol: OFU60318.1
gene_biotype: protein_coding
description:
  16S/23S rRNA (cytidine-2'-O)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00185
symbol: nadK
gene_biotype: protein_coding
description:
  NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: HMPREF3121_00195
symbol: OFU60321.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00205
symbol: HMPREF3121_00205
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00210
symbol: xerD
gene_biotype: protein_coding
description:
  Site-specific tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: HMPREF3121_00215
symbol: OFU60341.1
gene_biotype: protein_coding
description:
  Chromosome partitioning protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00220
symbol: OFU60342.1
gene_biotype: protein_coding
description:
  Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: HMPREF3121_00235
symbol: OFU60325.1
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00260
symbol: OFU60330.1
gene_biotype: protein_coding
description:
  Iron-siderophore ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00265
symbol: OFU60331.1
gene_biotype: protein_coding
description:
  Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00275
symbol: HMPREF3121_00275
gene_biotype: protein_coding
description:
  ABC transporter permease; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00280
symbol: OFU60343.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00290
symbol: HMPREF3121_00290
gene_biotype: protein_coding
description:
  Transporter; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: HMPREF3121_00295
symbol: bioD
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: HMPREF3121_00305
symbol: OFU60336.1
gene_biotype: protein_coding
description:
  Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: HMPREF3121_00310
symbol: bioD-2
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: HMPREF3121_00315
symbol: OFU60338.1
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: HMPREF3121_00320
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily.


ensembl_gene_id: HMPREF3121_00325
symbol: OFU60287.1
gene_biotype: protein_coding
description:
  Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00335
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: HMPREF3121_00340
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: HMPREF3121_00365
symbol: HMPREF3121_00365
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_00370
symbol: cobS
gene_biotype: protein_coding
description:
  Hypothetical protein; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: HMPREF3121_00380
symbol: HMPREF3121_00380
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00390
symbol: OFU60122.1
gene_biotype: protein_coding
description:
  Iron-sulfur cluster insertion protein ErpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.


ensembl_gene_id: HMPREF3121_00395
symbol: OFU60123.1
gene_biotype: protein_coding
description:
  Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00405
symbol: OFU60125.1
gene_biotype: protein_coding
description:
  Cytochrome-c oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00425
symbol: OFU60129.1
gene_biotype: protein_coding
description:
  Menaquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00445
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: HMPREF3121_00450
symbol: OFU60152.1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00460
symbol: OFU60135.1
gene_biotype: protein_coding
description:
  Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_00465
symbol: OFU60153.1
gene_biotype: protein_coding
description:
  Alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00480
symbol: OFU60138.1
gene_biotype: protein_coding
description:
  Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00485
symbol: OFU60139.1
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00495
symbol: OFU60141.1
gene_biotype: protein_coding
description:
  3-deoxy-7-phosphoheptulonate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II DAHP synthase family.


ensembl_gene_id: HMPREF3121_00500
symbol: OFU60142.1
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00505
symbol: OFU60143.1
gene_biotype: protein_coding
description:
  DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00515
symbol: HMPREF3121_00515
gene_biotype: protein_coding
description:
  Alpha 1,6 mannopyranosyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00520
symbol: OFU60144.1
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: HMPREF3121_00525
symbol: OFU60145.1
gene_biotype: protein_coding
description:
  5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: HMPREF3121_00540
symbol: HMPREF3121_00540
gene_biotype: protein_coding
description:
  GNAT family N-acetyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00550
symbol: mraZ
gene_biotype: protein_coding
description:
  Division/cell wall cluster transcriptional repressor MraZ; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MraZ family.


ensembl_gene_id: HMPREF3121_00555
symbol: rsmH
gene_biotype: protein_coding
description:
  16S rRNA (cytosine(1402)-N(4))-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: HMPREF3121_00570
symbol: OFU59957.1
gene_biotype: protein_coding
description:
  Peptide-methionine (R)-S-oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: HMPREF3121_00590
symbol: OFU59796.1
gene_biotype: protein_coding
description:
  Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00600
symbol: OFU59800.1
gene_biotype: protein_coding
description:
  Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00605
symbol: OFU59798.1
gene_biotype: protein_coding
description:
  Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00625
symbol: OFU59702.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: HMPREF3121_00635
symbol: gluQ
gene_biotype: protein_coding
description:
  tRNA glutamyl-Q synthetase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.


ensembl_gene_id: HMPREF3121_00640
symbol: OFU59706.1
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: HMPREF3121_00645
symbol: OFU59705.1
gene_biotype: protein_coding
description:
  Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00655
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: HMPREF3121_00665
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: HMPREF3121_00695
symbol: OFU59643.1
gene_biotype: protein_coding
description:
  Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: HMPREF3121_00705
symbol: OFU59645.1
gene_biotype: protein_coding
description:
  Ribose-5-phosphate isomerase; Catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00715
symbol: OFU59647.1
gene_biotype: protein_coding
description:
  Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00720
symbol: OFU59648.1
gene_biotype: protein_coding
description:
  Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00725
symbol: OFU59649.1
gene_biotype: protein_coding
description:
  Glucan synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00735
symbol: OFU59651.1
gene_biotype: protein_coding
description:
  Hemin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00745
symbol: OFU59662.1
gene_biotype: protein_coding
description:
  Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00750
symbol: OFU59653.1
gene_biotype: protein_coding
description:
  Energy-dependent translational throttle protein EttA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00760
symbol: OFU59655.1
gene_biotype: protein_coding
description:
  Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00780
symbol: OFU59658.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: HMPREF3121_00785
symbol: orn
gene_biotype: protein_coding
description:
  Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: HMPREF3121_00810
symbol: HMPREF3121_00810
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase S8 family.


ensembl_gene_id: HMPREF3121_00840
symbol: rplQ
gene_biotype: protein_coding
description:
  tRNA pseudouridine(38-40) synthase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00845
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: HMPREF3121_00850
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: HMPREF3121_00855
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: HMPREF3121_00860
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: HMPREF3121_00865
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: HMPREF3121_00875
symbol: OFU59463.1
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: HMPREF3121_00885
symbol: map
gene_biotype: protein_coding
description:
  Type I methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: HMPREF3121_00890
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: HMPREF3121_00895
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: HMPREF3121_00915
symbol: OFU59470.1
gene_biotype: protein_coding
description:
  Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00945
symbol: ispH
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: HMPREF3121_00955
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: HMPREF3121_00960
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: HMPREF3121_00970
symbol: glpX
gene_biotype: protein_coding
description:
  Type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00975
symbol: aspA
gene_biotype: protein_coding
description:
  Aspartate ammonia-lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: HMPREF3121_00985
symbol: OFU59312.1
gene_biotype: protein_coding
description:
  Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_00995
symbol: OFU59363.1
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.


ensembl_gene_id: HMPREF3121_01000
symbol: OFU59314.1
gene_biotype: protein_coding
description:
  Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01015
symbol: OFU59364.1
gene_biotype: protein_coding
description:
  3-oxoadipate enol-lactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01020
symbol: OFU59317.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01030
symbol: OFU59318.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: HMPREF3121_01035
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: HMPREF3121_01045
symbol: coaA
gene_biotype: protein_coding
description:
  Type I pantothenate kinase; Catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01055
symbol: OFU59323.1
gene_biotype: protein_coding
description:
  Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: HMPREF3121_01060
symbol: OFU59324.1
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: HMPREF3121_01070
symbol: mca
gene_biotype: protein_coding
description:
  Hypothetical protein; A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S- conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics; Belongs to the MshB deacetylase family. Mca subfamily.


ensembl_gene_id: HMPREF3121_01080
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: HMPREF3121_01110
symbol: gabD2
gene_biotype: protein_coding
description:
  tRNA-Leu; NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01115
symbol: OFU59331.1
gene_biotype: protein_coding
description:
  Septum formation initiator family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01125
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: HMPREF3121_01140
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: HMPREF3121_01145
symbol: OFU59336.1
gene_biotype: protein_coding
description:
  TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01265
symbol: OFU59359.1
gene_biotype: protein_coding
description:
  Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01285
symbol: OFU59304.1
gene_biotype: protein_coding
description:
  Purine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01300
symbol: HMPREF3121_01300
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01305
symbol: OFU59279.1
gene_biotype: protein_coding
description:
  Peptide chain release factor I; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01315
symbol: OFU59161.1
gene_biotype: protein_coding
description:
  Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01320
symbol: OFU59162.1
gene_biotype: protein_coding
description:
  NYN domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01325
symbol: OFU58897.1
gene_biotype: protein_coding
description:
  Inner membrane protein YhjD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01330
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3121_01340
symbol: OFU58929.1
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01360
symbol: OFU58903.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01370
symbol: HMPREF3121_01370
gene_biotype: protein_coding
description:
  MFS transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01375
symbol: OFU58905.1
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase; NADP-specific, catalyzes the formation of 2-oxoglutarate from isocitrate or oxalosuccinate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the monomeric-type IDH family.


ensembl_gene_id: HMPREF3121_01395
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: HMPREF3121_01405
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: HMPREF3121_01415
symbol: OFU58912.1
gene_biotype: protein_coding
description:
  RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: HMPREF3121_01420
symbol: OFU58913.1
gene_biotype: protein_coding
description:
  Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01425
symbol: dnaE2
gene_biotype: protein_coding
description:
  Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: HMPREF3121_01430
symbol: OFU58914.1
gene_biotype: protein_coding
description:
  Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01435
symbol: metN
gene_biotype: protein_coding
description:
  Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: HMPREF3121_01440
symbol: OFU58932.1
gene_biotype: protein_coding
description:
  Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01465
symbol: OFU58919.1
gene_biotype: protein_coding
description:
  Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01480
symbol: OFU58921.1
gene_biotype: protein_coding
description:
  Cholesterol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01485
symbol: OFU58922.1
gene_biotype: protein_coding
description:
  Guanosine monophosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01490
symbol: guaB
gene_biotype: protein_coding
description:
  IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: HMPREF3121_01515
symbol: groEL
gene_biotype: protein_coding
description:
  Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: HMPREF3121_01520
symbol: groS
gene_biotype: protein_coding
description:
  Co-chaperone GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: HMPREF3121_01525
symbol: tsaD
gene_biotype: protein_coding
description:
  N(6)-L-threonylcarbamoyladenine synthase TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: HMPREF3121_01530
symbol: OFU58827.1
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01540
symbol: OFU58825.1
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01560
symbol: HMPREF3121_01560
gene_biotype: protein_coding
description:
  Transposase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_01565
symbol: OFU58658.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: HMPREF3121_01600
symbol: OFU58692.1
gene_biotype: protein_coding
description:
  AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01610
symbol: OFU58664.1
gene_biotype: protein_coding
description:
  FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01620
symbol: OFU58693.1
gene_biotype: protein_coding
description:
  Short chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01630
symbol: HMPREF3121_01630
gene_biotype: protein_coding
description:
  TetR family transcriptional regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01635
symbol: purH
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase; Involved in de novo purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01640
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: HMPREF3121_01660
symbol: OFU58694.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01665
symbol: OFU58672.1
gene_biotype: protein_coding
description:
  Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01675
symbol: OFU58695.1
gene_biotype: protein_coding
description:
  NAD-dependent succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: HMPREF3121_01705
symbol: pgi
gene_biotype: protein_coding
description:
  Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family.


ensembl_gene_id: HMPREF3121_01720
symbol: OFU58696.1
gene_biotype: protein_coding
description:
  3'(2'),5'-bisphosphate nucleotidase CysQ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01725
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: HMPREF3121_01730
symbol: OFU58683.1
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: HMPREF3121_01735
symbol: OFU58697.1
gene_biotype: protein_coding
description:
  NrdH-redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01740
symbol: OFU58684.1
gene_biotype: protein_coding
description:
  Flavoprotein disulfide reductase; Catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01745
symbol: OFU58685.1
gene_biotype: protein_coding
description:
  N-acyl-L-amino acid amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01755
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: HMPREF3121_01775
symbol: OFU58690.1
gene_biotype: protein_coding
description:
  Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01780
symbol: OFU58699.1
gene_biotype: protein_coding
description:
  D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.


ensembl_gene_id: HMPREF3121_01830
symbol: OFU58591.1
gene_biotype: protein_coding
description:
  Tryptophanase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01840
symbol: OFU58585.1
gene_biotype: protein_coding
description:
  methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01850
symbol: HMPREF3121_01850
gene_biotype: protein_coding
description:
  Polyketide synthase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_01855
symbol: OFU58452.1
gene_biotype: protein_coding
description:
  Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01870
symbol: HMPREF3121_01870
gene_biotype: protein_coding
description:
  Glycosyl transferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01875
symbol: OFU58455.1
gene_biotype: protein_coding
description:
  Ornithine cyclodeaminase; Catalyzes the formation of L-proline from L-ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01880
symbol: OFU58363.1
gene_biotype: protein_coding
description:
  Cell division protein FtsI; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01885
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: HMPREF3121_01890
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: HMPREF3121_01895
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: HMPREF3121_01900
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: HMPREF3121_01905
symbol: OFU58337.1
gene_biotype: protein_coding
description:
  Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.


ensembl_gene_id: HMPREF3121_01910
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: HMPREF3121_01925
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsQ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: HMPREF3121_01930
symbol: OFU58340.1
gene_biotype: protein_coding
description:
  Laccase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: HMPREF3121_01935
symbol: OFU58341.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: HMPREF3121_01945
symbol: OFU58343.1
gene_biotype: protein_coding
description:
  Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01950
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: HMPREF3121_01960
symbol: dinB
gene_biotype: protein_coding
description:
  DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: HMPREF3121_01965
symbol: OFU58365.1
gene_biotype: protein_coding
description:
  L-asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_01985
symbol: HMPREF3121_01985
gene_biotype: protein_coding
description:
  Signal peptidase II; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: HMPREF3121_01995
symbol: OFU58350.1
gene_biotype: protein_coding
description:
  Protein rarD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02005
symbol: OFU58352.1
gene_biotype: protein_coding
description:
  Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02010
symbol: OFU58353.1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02020
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: HMPREF3121_02040
symbol: OFU58358.1
gene_biotype: protein_coding
description:
  Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02045
symbol: OFU58359.1
gene_biotype: protein_coding
description:
  IMPACT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02060
symbol: OFU58362.1
gene_biotype: protein_coding
description:
  RNA-binding protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02070
symbol: OFU58310.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: HMPREF3121_02075
symbol: OFU58311.1
gene_biotype: protein_coding
description:
  LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02090
symbol: HMPREF3121_02090
gene_biotype: protein_coding
description:
  AMP-binding protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: HMPREF3121_02095
symbol: OFU58213.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: HMPREF3121_02100
symbol: OFU58214.1
gene_biotype: protein_coding
description:
  succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02110
symbol: OFU58216.1
gene_biotype: protein_coding
description:
  AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02115
symbol: OFU58225.1
gene_biotype: protein_coding
description:
  Citrate lyase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: HMPREF3121_02120
symbol: OFU58226.1
gene_biotype: protein_coding
description:
  Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02130
symbol: OFU58218.1
gene_biotype: protein_coding
description:
  acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02135
symbol: OFU58219.1
gene_biotype: protein_coding
description:
  methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02150
symbol: OFU58222.1
gene_biotype: protein_coding
description:
  Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02155
symbol: OFU58223.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase carboxyltransferase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02170
symbol: OFU58133.1
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: HMPREF3121_02180
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcriptional repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: HMPREF3121_02185
symbol: dnaJ
gene_biotype: protein_coding
description:
  Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]


ensembl_gene_id: HMPREF3121_02190
symbol: OFU58087.1
gene_biotype: protein_coding
description:
  16S rRNA (uracil(1498)-N(3))-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: HMPREF3121_02210
symbol: HMPREF3121_02210
gene_biotype: protein_coding
description:
  rRNA maturation RNase YbeY; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02215
symbol: era
gene_biotype: protein_coding
description:
  GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: HMPREF3121_02230
symbol: HMPREF3121_02230
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: HMPREF3121_02240
symbol: OFU58135.1
gene_biotype: protein_coding
description:
  Transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.


ensembl_gene_id: HMPREF3121_02245
symbol: glyQS
gene_biotype: protein_coding
description:
  glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3121_02260
symbol: OFU58095.1
gene_biotype: protein_coding
description:
  Deoxyguanosinetriphosphate triphosphohydrolase; dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02270
symbol: OFU58137.1
gene_biotype: protein_coding
description:
  Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02275
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family.


ensembl_gene_id: HMPREF3121_02290
symbol: OFU58138.1
gene_biotype: protein_coding
description:
  GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02295
symbol: OFU58100.1
gene_biotype: protein_coding
description:
  Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02300
symbol: OFU58139.1
gene_biotype: protein_coding
description:
  S-(hydroxymethyl)mycothiol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02320
symbol: OFU58141.1
gene_biotype: protein_coding
description:
  ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02325
symbol: OFU58102.1
gene_biotype: protein_coding
description:
  4-hydroxyacetophenone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02335
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: HMPREF3121_02345
symbol: OFU58144.1
gene_biotype: protein_coding
description:
  Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02355
symbol: HMPREF3121_02355
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: HMPREF3121_02360
symbol: OFU58104.1
gene_biotype: protein_coding
description:
  Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02385
symbol: OFU58109.1
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring), homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: HMPREF3121_02400
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: HMPREF3121_02415
symbol: OFU58112.1
gene_biotype: protein_coding
description:
  Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: HMPREF3121_02430
symbol: OFU58114.1
gene_biotype: protein_coding
description:
  Nif3-like dinuclear metal center hexameric protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.


ensembl_gene_id: HMPREF3121_02440
symbol: OFU58148.1
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02455
symbol: OFU58149.1
gene_biotype: protein_coding
description:
  TrpB-like pyridoxal-phosphate dependent enzyme; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: HMPREF3121_02475
symbol: OFU58150.1
gene_biotype: protein_coding
description:
  Chad domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02480
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: HMPREF3121_02485
symbol: OFU58120.1
gene_biotype: protein_coding
description:
  Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family.


ensembl_gene_id: HMPREF3121_02490
symbol: OFU58121.1
gene_biotype: protein_coding
description:
  Bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of [...]


ensembl_gene_id: HMPREF3121_02505
symbol: glsA
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glutaminase family.


ensembl_gene_id: HMPREF3121_02515
symbol: OFU58126.1
gene_biotype: protein_coding
description:
  MFS transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02525
symbol: OFU58128.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: HMPREF3121_02530
symbol: OFU58129.1
gene_biotype: protein_coding
description:
  RNase III inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02540
symbol: OFU58152.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.


ensembl_gene_id: HMPREF3121_02545
symbol: OFU58131.1
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02570
symbol: OFU58031.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: HMPREF3121_02580
symbol: OFU57986.1
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02585
symbol: OFU57987.1
gene_biotype: protein_coding
description:
  Thiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.


ensembl_gene_id: HMPREF3121_02600
symbol: OFU57990.1
gene_biotype: protein_coding
description:
  Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.


ensembl_gene_id: HMPREF3121_02610
symbol: rsmG
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: HMPREF3121_02615
symbol: OFU57992.1
gene_biotype: protein_coding
description:
  Membrane protein insertase YidC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02620
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: HMPREF3121_02625
symbol: rpmH
gene_biotype: protein_coding
description:
  50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: HMPREF3121_02630
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiation protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: HMPREF3121_02635
symbol: OFU57996.1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of  [...]


ensembl_gene_id: HMPREF3121_02640
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication/repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: HMPREF3121_02650
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: HMPREF3121_02660
symbol: OFU58033.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02670
symbol: OFU58002.1
gene_biotype: protein_coding
description:
  CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02675
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: HMPREF3121_02700
symbol: OFU58006.1
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: HMPREF3121_02710
symbol: OFU58008.1
gene_biotype: protein_coding
description:
  Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02735
symbol: OFU58010.1
gene_biotype: protein_coding
description:
  Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02755
symbol: HMPREF3121_02755
gene_biotype: protein_coding
description:
  tRNA-Leu; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02760
symbol: OFU58013.1
gene_biotype: protein_coding
description:
  Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02780
symbol: HMPREF3121_02780
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutT; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02790
symbol: OFU58017.1
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02805
symbol: OFU58019.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02810
symbol: OFU58020.1
gene_biotype: protein_coding
description:
  enoyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02815
symbol: OFU58037.1
gene_biotype: protein_coding
description:
  Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02820
symbol: OFU58021.1
gene_biotype: protein_coding
description:
  LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF3121_02830
symbol: OFU58038.1
gene_biotype: protein_coding
description:
  Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02835
symbol: OFU58039.1
gene_biotype: protein_coding
description:
  YggS family pyridoxal phosphate enzyme; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: HMPREF3121_02855
symbol: OFU58025.1
gene_biotype: protein_coding
description:
  Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: HMPREF3121_02865
symbol: OFU58040.1
gene_biotype: protein_coding
description:
  3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02870
symbol: OFU58041.1
gene_biotype: protein_coding
description:
  Hly III family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02875
symbol: OFU58027.1
gene_biotype: protein_coding
description:
  Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02880
symbol: OFU58042.1
gene_biotype: protein_coding
description:
  Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02885
symbol: OFU58043.1
gene_biotype: protein_coding
description:
  NADPH-dependent 2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02900
symbol: OFU58030.1
gene_biotype: protein_coding
description:
  SDR family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: HMPREF3121_02905
symbol: OFU58044.1
gene_biotype: protein_coding
description:
  Short chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: HMPREF3121_02910
symbol: OFU57932.1
gene_biotype: protein_coding
description:
  acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02915
symbol: OFU57944.1
gene_biotype: protein_coding
description:
  acyl-CoA oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02925
symbol: HMPREF3121_02925
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0145 family.


ensembl_gene_id: HMPREF3121_02970
symbol: OFU57939.1
gene_biotype: protein_coding
description:
  RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02985
symbol: OFU57948.1
gene_biotype: protein_coding
description:
  Bleomycin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_02990
symbol: OFU57949.1
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03000
symbol: OFU57943.1
gene_biotype: protein_coding
description:
  Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03010
symbol: HMPREF3121_03010
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF3121_03025
symbol: OFU57904.1
gene_biotype: protein_coding
description:
  Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_03035
symbol: OFU57906.1
gene_biotype: protein_coding
description:
  Thymidylate kinase; Catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03040
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: HMPREF3121_03055
symbol: OFU57910.1
gene_biotype: protein_coding
description:
  Mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03065
symbol: manB
gene_biotype: protein_coding
description:
  Phosphomannomutase/phosphoglucomutase; Converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03085
symbol: OFU57915.1
gene_biotype: protein_coding
description:
  GDP-mannose pyrophosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03090
symbol: OFU57916.1
gene_biotype: protein_coding
description:
  alpha-D-GlcNAc-diphosphoryl polyprenol, alpha-3-L-rhamnosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03100
symbol: HMPREF3121_03100
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_03120
symbol: OFU57894.1
gene_biotype: protein_coding
description:
  Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03130
symbol: OFU57867.1
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03135
symbol: OFU57868.1
gene_biotype: protein_coding
description:
  ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03145
symbol: OFU57871.1
gene_biotype: protein_coding
description:
  Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03150
symbol: OFU57870.1
gene_biotype: protein_coding
description:
  4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03160
symbol: HMPREF3121_03160
gene_biotype: protein_coding
description:
  Ni/Fe hydrogenase; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03175
symbol: hypA
gene_biotype: protein_coding
description:
  Hydrogenase expression protein HupH; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: HMPREF3121_03185
symbol: OFU57785.1
gene_biotype: protein_coding
description:
  Hydrogenase expression protein HypE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03215
symbol: tgt
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. [...]


ensembl_gene_id: HMPREF3121_03230
symbol: OFU57516.1
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03240
symbol: OFU57518.1
gene_biotype: protein_coding
description:
  3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03250
symbol: OFU57520.1
gene_biotype: protein_coding
description:
  Hemin transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.


ensembl_gene_id: HMPREF3121_03260
symbol: pckG
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: HMPREF3121_03280
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine(46)-N(7))-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: HMPREF3121_03290
symbol: OFU57526.1
gene_biotype: protein_coding
description:
  RND transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_03310
symbol: OFU57301.1
gene_biotype: protein_coding
description:
  Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03320
symbol: OFU57233.1
gene_biotype: protein_coding
description:
  DNA repair ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03330
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: HMPREF3121_03340
symbol: recA
gene_biotype: protein_coding
description:
  DNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: HMPREF3121_03350
symbol: OFU57210.1
gene_biotype: protein_coding
description:
  Biotin biosynthesis protein BioY; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03355
symbol: OFU57211.1
gene_biotype: protein_coding
description:
  Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03360
symbol: OFU57212.1
gene_biotype: protein_coding
description:
  Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03370
symbol: OFU57214.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03375
symbol: OFU57215.1
gene_biotype: protein_coding
description:
  Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.


ensembl_gene_id: HMPREF3121_03380
symbol: OFU57216.1
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: HMPREF3121_03390
symbol: HMPREF3121_03390
gene_biotype: protein_coding
description:
  Tellurium resistance protein TerC; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FtsK/SpoIIIE/SftA family.


ensembl_gene_id: HMPREF3121_03395
symbol: OFU57217.1
gene_biotype: protein_coding
description:
  TIGR03085 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03400
symbol: rnj
gene_biotype: protein_coding
description:
  Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: HMPREF3121_03405
symbol: dapA
gene_biotype: protein_coding
description:
  4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: HMPREF3121_03410
symbol: thyX
gene_biotype: protein_coding
description:
  FAD-dependent thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: HMPREF3121_03415
symbol: dapB
gene_biotype: protein_coding
description:
  4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: HMPREF3121_03420
symbol: OFU57238.1
gene_biotype: protein_coding
description:
  Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.


ensembl_gene_id: HMPREF3121_03435
symbol: HMPREF3121_03435
gene_biotype: protein_coding
description:
  Galactose-1-phosphate uridylyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03440
symbol: OFU57224.1
gene_biotype: protein_coding
description:
  Na+/galactose cotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: HMPREF3121_03445
symbol: OFU57239.1
gene_biotype: protein_coding
description:
  Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03450
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: HMPREF3121_03455
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: HMPREF3121_03460
symbol: OFU57227.1
gene_biotype: protein_coding
description:
  Bifunctional riboflavin kinase/FMN adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.


ensembl_gene_id: HMPREF3121_03465
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine(55) synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: HMPREF3121_03470
symbol: OFU57229.1
gene_biotype: protein_coding
description:
  4'-phosphopantetheinyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: HMPREF3121_03480
symbol: OFU57231.1
gene_biotype: protein_coding
description:
  MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03485
symbol: OFU57232.1
gene_biotype: protein_coding
description:
  Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03490
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: HMPREF3121_03495
symbol: OFU57241.1
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.


ensembl_gene_id: HMPREF3121_03500
symbol: OFU57146.1
gene_biotype: protein_coding
description:
  Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03505
symbol: OFU57147.1
gene_biotype: protein_coding
description:
  PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03510
symbol: OFU57148.1
gene_biotype: protein_coding
description:
  1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: HMPREF3121_03515
symbol: OFU57149.1
gene_biotype: protein_coding
description:
  D-beta-D-heptose 1-phosphate adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03520
symbol: OFU57184.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate--protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: HMPREF3121_03525
symbol: lexA
gene_biotype: protein_coding
description:
  Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: HMPREF3121_03535
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: HMPREF3121_03540
symbol: OFU57152.1
gene_biotype: protein_coding
description:
  ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03545
symbol: OFU57153.1
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03565
symbol: OFU57186.1
gene_biotype: protein_coding
description:
  N-acylsphingosine amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03575
symbol: ahpD
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity.


ensembl_gene_id: HMPREF3121_03580
symbol: OFU57159.1
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03590
symbol: OFU57187.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03600
symbol: OFU57162.1
gene_biotype: protein_coding
description:
  Proteasome protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03610
symbol: OFU57164.1
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase GalE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: HMPREF3121_03615
symbol: OFU57165.1
gene_biotype: protein_coding
description:
  Toxin repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03620
symbol: OFU57166.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: HMPREF3121_03625
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: HMPREF3121_03630
symbol: OFU57168.1
gene_biotype: protein_coding
description:
  rRNA or tRNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily.


ensembl_gene_id: HMPREF3121_03665
symbol: OFU57174.1
gene_biotype: protein_coding
description:
  Carboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03685
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: HMPREF3121_03690
symbol: OFU57179.1
gene_biotype: protein_coding
description:
  Polyphosphate glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03695
symbol: OFU57180.1
gene_biotype: protein_coding
description:
  Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03715
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: HMPREF3121_03735
symbol: dxs
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: HMPREF3121_03750
symbol: OFU57124.1
gene_biotype: protein_coding
description:
  Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: HMPREF3121_03755
symbol: OFU57125.1
gene_biotype: protein_coding
description:
  Enterochelin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: HMPREF3121_03760
symbol: OFU57118.1
gene_biotype: protein_coding
description:
  Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03770
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: HMPREF3121_03775
symbol: OFU57121.1
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.


ensembl_gene_id: HMPREF3121_03785
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: HMPREF3121_03790
symbol: OFU57038.1
gene_biotype: protein_coding
description:
  Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03795
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: HMPREF3121_03800
symbol: obgE
gene_biotype: protein_coding
description:
  GTPase ObgE; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: HMPREF3121_03805
symbol: OFU57041.1
gene_biotype: protein_coding
description:
  Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03810
symbol: rpmA
gene_biotype: protein_coding
description:
  50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: HMPREF3121_03815
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: HMPREF3121_03825
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: HMPREF3121_03835
symbol: OFU57066.1
gene_biotype: protein_coding
description:
  Dihydrofolate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03840
symbol: valS
gene_biotype: protein_coding
description:
  valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: HMPREF3121_03845
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.


ensembl_gene_id: HMPREF3121_03850
symbol: OFU57047.1
gene_biotype: protein_coding
description:
  Acetyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_03855
symbol: OFU57048.1
gene_biotype: protein_coding
description:
  Arsenical-resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03860
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: HMPREF3121_03870
symbol: OFU57051.1
gene_biotype: protein_coding
description:
  Benzoate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03890
symbol: OFU57055.1
gene_biotype: protein_coding
description:
  IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03900
symbol: OFU57057.1
gene_biotype: protein_coding
description:
  3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03905
symbol: OFU57058.1
gene_biotype: protein_coding
description:
  Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family.


ensembl_gene_id: HMPREF3121_03910
symbol: OFU57059.1
gene_biotype: protein_coding
description:
  Chloromuconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: HMPREF3121_03915
symbol: OFU57060.1
gene_biotype: protein_coding
description:
  Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03920
symbol: OFU57061.1
gene_biotype: protein_coding
description:
  Benzoate 1,2-dioxygenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03925
symbol: OFU57067.1
gene_biotype: protein_coding
description:
  Benzoate 1,2-dioxygenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03930
symbol: OFU57062.1
gene_biotype: protein_coding
description:
  Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03935
symbol: benD
gene_biotype: protein_coding
description:
  1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: HMPREF3121_03945
symbol: OFU56950.1
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03965
symbol: OFU56954.1
gene_biotype: protein_coding
description:
  Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03980
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: HMPREF3121_03985
symbol: OFU56957.1
gene_biotype: protein_coding
description:
  Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03990
symbol: OFU56963.1
gene_biotype: protein_coding
description:
  MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_03995
symbol: OFU56964.1
gene_biotype: protein_coding
description:
  LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04010
symbol: whiB-4
gene_biotype: protein_coding
description:
  Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: HMPREF3121_04015
symbol: OFU56966.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04020
symbol: OFU56960.1
gene_biotype: protein_coding
description:
  glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04025
symbol: OFU56961.1
gene_biotype: protein_coding
description:
  Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04060
symbol: HMPREF3121_04060
gene_biotype: protein_coding
description:
  MnhE protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04080
symbol: OFU56872.1
gene_biotype: protein_coding
description:
  Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.


ensembl_gene_id: HMPREF3121_04085
symbol: OFU56873.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: HMPREF3121_04090
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: HMPREF3121_04095
symbol: OFU56875.1
gene_biotype: protein_coding
description:
  Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family.


ensembl_gene_id: HMPREF3121_04120
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: HMPREF3121_04150
symbol: nagB
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.


ensembl_gene_id: HMPREF3121_04155
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: HMPREF3121_04160
symbol: OFU56812.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: HMPREF3121_04205
symbol: OFU56820.1
gene_biotype: protein_coding
description:
  Arsenic resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04215
symbol: OFU56821.1
gene_biotype: protein_coding
description:
  CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04230
symbol: amn
gene_biotype: protein_coding
description:
  AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.


ensembl_gene_id: HMPREF3121_04235
symbol: OFU56826.1
gene_biotype: protein_coding
description:
  Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04260
symbol: HMPREF3121_04260
gene_biotype: protein_coding
description:
  Thiol-disulfide oxidoreductase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04265
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: HMPREF3121_04270
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: HMPREF3121_04275
symbol: OFU56753.1
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase subunit PurS; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04285
symbol: OFU56755.1
gene_biotype: protein_coding
description:
  Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.


ensembl_gene_id: HMPREF3121_04295
symbol: OFU56761.1
gene_biotype: protein_coding
description:
  Protease 2; PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04300
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SAICAR synthetase family.


ensembl_gene_id: HMPREF3121_04310
symbol: OFU56759.1
gene_biotype: protein_coding
description:
  beta-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04325
symbol: OFU56425.1
gene_biotype: protein_coding
description:
  Ribonucleotide-diphosphate reductase subunit beta; B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04330
symbol: nrdI
gene_biotype: protein_coding
description:
  Ribonucleotide reductase assembly protein NrdI; Probably involved in ribonucleotide reductase function.


ensembl_gene_id: HMPREF3121_04335
symbol: OFU56427.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04360
symbol: leuC
gene_biotype: protein_coding
description:
  Isopropylmalate isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: HMPREF3121_04365
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: HMPREF3121_04370
symbol: OFU56433.1
gene_biotype: protein_coding
description:
  DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: HMPREF3121_04375
symbol: OFU56434.1
gene_biotype: protein_coding
description:
  NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.


ensembl_gene_id: HMPREF3121_04380
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; Catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF3121_04385
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: HMPREF3121_04395
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: HMPREF3121_04400
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: HMPREF3121_04410
symbol: OFU56439.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04415
symbol: OFU56500.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04420
symbol: OFU56440.1
gene_biotype: protein_coding
description:
  16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04425
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: HMPREF3121_04440
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: HMPREF3121_04445
symbol: mutM
gene_biotype: protein_coding
description:
  DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: HMPREF3121_04455
symbol: OFU56447.1
gene_biotype: protein_coding
description:
  Sodium:alanine symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04460
symbol: OFU56448.1
gene_biotype: protein_coding
description:
  Acylphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04470
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: HMPREF3121_04485
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: HMPREF3121_04490
symbol: OFU56454.1
gene_biotype: protein_coding
description:
  Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04500
symbol: ffh
gene_biotype: protein_coding
description:
  Transcriptional regulator; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: HMPREF3121_04515
symbol: rpsP
gene_biotype: protein_coding
description:
  30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: HMPREF3121_04520
symbol: rimM
gene_biotype: protein_coding
description:
  Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: HMPREF3121_04525
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine(37)-N(1))-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: HMPREF3121_04545
symbol: HMPREF3121_04545
gene_biotype: protein_coding
description:
  Phosphatidic acid phosphatase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04565
symbol: OFU56466.1
gene_biotype: protein_coding
description:
  RNA-binding transcriptional accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04585
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: HMPREF3121_04590
symbol: OFU56471.1
gene_biotype: protein_coding
description:
  Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.


ensembl_gene_id: HMPREF3121_04605
symbol: OFU56473.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.


ensembl_gene_id: HMPREF3121_04615
symbol: OFU56475.1
gene_biotype: protein_coding
description:
  Smf family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04620
symbol: xerC
gene_biotype: protein_coding
description:
  Recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: HMPREF3121_04630
symbol: rpsB
gene_biotype: protein_coding
description:
  30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: HMPREF3121_04635
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: HMPREF3121_04645
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: HMPREF3121_04650
symbol: OFU56480.1
gene_biotype: protein_coding
description:
  CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDS family.


ensembl_gene_id: HMPREF3121_04660
symbol: rlmN
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: HMPREF3121_04670
symbol: dxr
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: HMPREF3121_04675
symbol: OFU56482.1
gene_biotype: protein_coding
description:
  Signaling protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04680
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: HMPREF3121_04695
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: HMPREF3121_04700
symbol: OFU56486.1
gene_biotype: protein_coding
description:
  Catalyzes the reduction of mycothione or glutathione to mycothione or glutathione disulfide; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04710
symbol: mqo
gene_biotype: protein_coding
description:
  Malate:quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04715
symbol: OFU56487.1
gene_biotype: protein_coding
description:
  Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04730
symbol: OFU56510.1
gene_biotype: protein_coding
description:
  cob(I)yrinic acid a,c-diamide adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04735
symbol: cobB
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: HMPREF3121_04740
symbol: OFU56490.1
gene_biotype: protein_coding
description:
  Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04745
symbol: OFU56491.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0246 family.


ensembl_gene_id: HMPREF3121_04750
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]


ensembl_gene_id: HMPREF3121_04760
symbol: rimP
gene_biotype: protein_coding
description:
  Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: HMPREF3121_04765
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription elongation factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: HMPREF3121_04795
symbol: OFU56177.1
gene_biotype: protein_coding
description:
  Integral membrane acyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_04810
symbol: OFU56180.1
gene_biotype: protein_coding
description:
  Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04830
symbol: dcd
gene_biotype: protein_coding
description:
  Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.


ensembl_gene_id: HMPREF3121_04855
symbol: HMPREF3121_04855
gene_biotype: protein_coding
description:
  ABC transporter permease; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04865
symbol: OFU56189.1
gene_biotype: protein_coding
description:
  UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04870
symbol: OFU56190.1
gene_biotype: protein_coding
description:
  YibE/F family protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_04880
symbol: HMPREF3121_04880
gene_biotype: protein_coding
description:
  DNA polymerase I; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04885
symbol: OFU56069.1
gene_biotype: protein_coding
description:
  DUF368 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04900
symbol: OFU56070.1
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04910
symbol: OFU56036.1
gene_biotype: protein_coding
description:
  Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04915
symbol: OFU56071.1
gene_biotype: protein_coding
description:
  Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04920
symbol: OFU56037.1
gene_biotype: protein_coding
description:
  Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04925
symbol: OFU56072.1
gene_biotype: protein_coding
description:
  Converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: HMPREF3121_04935
symbol: OFU56039.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: HMPREF3121_04940
symbol: OFU56040.1
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04945
symbol: OFU56041.1
gene_biotype: protein_coding
description:
  Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04955
symbol: OFU56073.1
gene_biotype: protein_coding
description:
  Alkene reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04965
symbol: HMPREF3121_04965
gene_biotype: protein_coding
description:
  Multidrug DMT transporter permease; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04970
symbol: OFU56074.1
gene_biotype: protein_coding
description:
  Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_04975
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: HMPREF3121_04980
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: HMPREF3121_04990
symbol: trpC
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TrpC family.


ensembl_gene_id: HMPREF3121_05000
symbol: trpE
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia.


ensembl_gene_id: HMPREF3121_05005
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: HMPREF3121_05010
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: HMPREF3121_05015
symbol: OFU56050.1
gene_biotype: protein_coding
description:
  Fructose 1,6-bisphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05020
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase; Catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05025
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: HMPREF3121_05030
symbol: OFU56053.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: HMPREF3121_05045
symbol: hisB
gene_biotype: protein_coding
description:
  Imidazoleglycerol-phosphate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05055
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol-phosphate transaminase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: HMPREF3121_05075
symbol: OFU56061.1
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide diphosphorylase (carboxylating); Catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NadC/ModD family.


ensembl_gene_id: HMPREF3121_05085
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: HMPREF3121_05095
symbol: OFU56065.1
gene_biotype: protein_coding
description:
  8-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05105
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase BioB; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: HMPREF3121_05115
symbol: OFU56075.1
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: HMPREF3121_05135
symbol: OFU55799.1
gene_biotype: protein_coding
description:
  Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05145
symbol: lysS
gene_biotype: protein_coding
description:
  lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3121_05155
symbol: OFU55801.1
gene_biotype: protein_coding
description:
  butyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05170
symbol: OFU55847.1
gene_biotype: protein_coding
description:
  acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05175
symbol: OFU55804.1
gene_biotype: protein_coding
description:
  Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AlaDH/PNT family.


ensembl_gene_id: HMPREF3121_05195
symbol: HMPREF3121_05195
gene_biotype: protein_coding
description:
  NDP-hexose 4-ketoreductase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05200
symbol: OFU55808.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the pirin family.


ensembl_gene_id: HMPREF3121_05210
symbol: OFU55810.1
gene_biotype: protein_coding
description:
  Adenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05215
symbol: OFU55811.1
gene_biotype: protein_coding
description:
  Beta-hydroxylase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: HMPREF3121_05225
symbol: OFU55813.1
gene_biotype: protein_coding
description:
  DNA integrity scanning protein DisA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DisA family.


ensembl_gene_id: HMPREF3121_05230
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: HMPREF3121_05245
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: HMPREF3121_05250
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: HMPREF3121_05260
symbol: cysS
gene_biotype: protein_coding
description:
  cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3121_05265
symbol: OFU55820.1
gene_biotype: protein_coding
description:
  23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: HMPREF3121_05275
symbol: HMPREF3121_05275
gene_biotype: protein_coding
description:
  Helicase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05285
symbol: OFU55848.1
gene_biotype: protein_coding
description:
  LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05295
symbol: OFU55824.1
gene_biotype: protein_coding
description:
  Flavin reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_05305
symbol: OFU55826.1
gene_biotype: protein_coding
description:
  Trehalose-6-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05325
symbol: HMPREF3121_05325
gene_biotype: protein_coding
description:
  tRNA-Thr; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05345
symbol: OFU55831.1
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase; Catalyzes the formation of acetate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.


ensembl_gene_id: HMPREF3121_05360
symbol: HMPREF3121_05360
gene_biotype: protein_coding
description:
  Lipase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05365
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family.


ensembl_gene_id: HMPREF3121_05370
symbol: OFU55835.1
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05380
symbol: OFU55850.1
gene_biotype: protein_coding
description:
  Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05385
symbol: OFU55837.1
gene_biotype: protein_coding
description:
  Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron/ascorbate-dependent oxidoreductase family.


ensembl_gene_id: HMPREF3121_05395
symbol: OFU55838.1
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: HMPREF3121_05405
symbol: OFU55852.1
gene_biotype: protein_coding
description:
  Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05410
symbol: OFU55840.1
gene_biotype: protein_coding
description:
  Hydrogenase formation protein HypD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05420
symbol: OFU55841.1
gene_biotype: protein_coding
description:
  Carbamoyltransferase HypF; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05430
symbol: OFU55843.1
gene_biotype: protein_coding
description:
  Hydrogenase expression protein HupK; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05435
symbol: OFU55844.1
gene_biotype: protein_coding
description:
  Hydrogenase accessory protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05530
symbol: OFU55773.1
gene_biotype: protein_coding
description:
  Phage antirepressor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05560
symbol: OFU55778.1
gene_biotype: protein_coding
description:
  Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.


ensembl_gene_id: HMPREF3121_05570
symbol: glmU
gene_biotype: protein_coding
description:
  Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: HMPREF3121_05575
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: HMPREF3121_05580
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25/general stress protein Ctc; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: HMPREF3121_05585
symbol: pth
gene_biotype: protein_coding
description:
  aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: HMPREF3121_05600
symbol: OFU55785.1
gene_biotype: protein_coding
description:
  Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05630
symbol: OFU55791.1
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05645
symbol: HMPREF3121_05645
gene_biotype: protein_coding
description:
  Transposase; Frameshifted; incomplete; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05650
symbol: OFU55704.1
gene_biotype: protein_coding
description:
  Peptidase M19; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05655
symbol: OFU55703.1
gene_biotype: protein_coding
description:
  Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05660
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: HMPREF3121_05665
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: HMPREF3121_05695
symbol: OFU55643.1
gene_biotype: protein_coding
description:
  FAD-linked oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05700
symbol: menG
gene_biotype: protein_coding
description:
  Bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).


ensembl_gene_id: HMPREF3121_05705
symbol: OFU55644.1
gene_biotype: protein_coding
description:
  Alpha-mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05715
symbol: menD
gene_biotype: protein_coding
description:
  2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.


ensembl_gene_id: HMPREF3121_05720
symbol: menC
gene_biotype: protein_coding
description:
  O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).


ensembl_gene_id: HMPREF3121_05725
symbol: menB
gene_biotype: protein_coding
description:
  1,4-dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.


ensembl_gene_id: HMPREF3121_05740
symbol: menA
gene_biotype: protein_coding
description:
  1,4-dihydroxy-2-naphthoate polyprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.


ensembl_gene_id: HMPREF3121_05755
symbol: HMPREF3121_05755
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: HMPREF3121_05760
symbol: OFU55648.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05765
symbol: OFU55587.1
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05775
symbol: OFU55589.1
gene_biotype: protein_coding
description:
  C-type cytochrome biogenesis protein CcsB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05780
symbol: OFU55590.1
gene_biotype: protein_coding
description:
  Cytochrome C biogenesis protein ResB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05785
symbol: OFU55591.1
gene_biotype: protein_coding
description:
  Cytochrome C biogenesis protein ResC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05790
symbol: OFU55592.1
gene_biotype: protein_coding
description:
  Effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05800
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05810
symbol: HMPREF3121_05810
gene_biotype: protein_coding
description:
  Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05820
symbol: OFU55596.1
gene_biotype: protein_coding
description:
  Delta-aminolevulinic acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ALAD family.


ensembl_gene_id: HMPREF3121_05830
symbol: hemC
gene_biotype: protein_coding
description:
  Bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: HMPREF3121_05835
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: HMPREF3121_05855
symbol: OFU55601.1
gene_biotype: protein_coding
description:
  Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05860
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: HMPREF3121_05900
symbol: gpmA
gene_biotype: protein_coding
description:
  Two-component sensor histidine kinase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: HMPREF3121_05910
symbol: mshA
gene_biotype: protein_coding
description:
  D-inositol-3-phosphate glycosyltransferase; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.


ensembl_gene_id: HMPREF3121_05915
symbol: OFU55609.1
gene_biotype: protein_coding
description:
  Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05935
symbol: OFU55612.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.


ensembl_gene_id: HMPREF3121_05940
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: HMPREF3121_05965
symbol: OFU55616.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05970
symbol: sdhA
gene_biotype: protein_coding
description:
  Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05980
symbol: OFU55657.1
gene_biotype: protein_coding
description:
  Kojibiose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_05990
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: HMPREF3121_05995
symbol: OFU55621.1
gene_biotype: protein_coding
description:
  Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06000
symbol: OFU55622.1
gene_biotype: protein_coding
description:
  Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06005
symbol: OFU55623.1
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06015
symbol: OFU55659.1
gene_biotype: protein_coding
description:
  Prolyl oligopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06020
symbol: OFU55658.1
gene_biotype: protein_coding
description:
  Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06035
symbol: OFU55660.1
gene_biotype: protein_coding
description:
  Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06050
symbol: OFU55627.1
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06065
symbol: OFU55629.1
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: HMPREF3121_06085
symbol: OFU55631.1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06090
symbol: OFU55664.1
gene_biotype: protein_coding
description:
  Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06095
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: HMPREF3121_06100
symbol: OFU55633.1
gene_biotype: protein_coding
description:
  Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06110
symbol: OFU55635.1
gene_biotype: protein_coding
description:
  Carnitine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.


ensembl_gene_id: HMPREF3121_06155
symbol: OFU55454.1
gene_biotype: protein_coding
description:
  Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06165
symbol: HMPREF3121_06165
gene_biotype: protein_coding
description:
  Peptidase M20; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06170
symbol: OFU55456.1
gene_biotype: protein_coding
description:
  Patatin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06210
symbol: OFU55404.1
gene_biotype: protein_coding
description:
  Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06215
symbol: OFU55369.1
gene_biotype: protein_coding
description:
  Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06235
symbol: OFU55405.1
gene_biotype: protein_coding
description:
  Na+-dependent transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06265
symbol: OFU55406.1
gene_biotype: protein_coding
description:
  Sodium-independent anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06270
symbol: OFU55407.1
gene_biotype: protein_coding
description:
  MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06285
symbol: HMPREF3121_06285
gene_biotype: protein_coding
description:
  Methyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06290
symbol: selO
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: HMPREF3121_06300
symbol: OFU55381.1
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06310
symbol: pntB
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit beta; Catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06315
symbol: OFU55409.1
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF3121_06320
symbol: OFU55383.1
gene_biotype: protein_coding
description:
  Flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06340
symbol: OFU55410.1
gene_biotype: protein_coding
description:
  O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06345
symbol: OFU55411.1
gene_biotype: protein_coding
description:
  23S rRNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: HMPREF3121_06370
symbol: OFU55390.1
gene_biotype: protein_coding
description:
  Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: HMPREF3121_06375
symbol: OFU55412.1
gene_biotype: protein_coding
description:
  Glutamate synthase; Unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06380
symbol: OFU55391.1
gene_biotype: protein_coding
description:
  Pyruvate ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06390
symbol: OFU55393.1
gene_biotype: protein_coding
description:
  2-oxoacid:acceptor oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06415
symbol: OFU55413.1
gene_biotype: protein_coding
description:
  Cyanate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06435
symbol: OFU55401.1
gene_biotype: protein_coding
description:
  Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06445
symbol: OFU55403.1
gene_biotype: protein_coding
description:
  Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06460
symbol: HMPREF3121_06460
gene_biotype: protein_coding
description:
  Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06465
symbol: lepA
gene_biotype: protein_coding
description:
  Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: HMPREF3121_06500
symbol: HMPREF3121_06500
gene_biotype: protein_coding
description:
  Fatty acid-binding protein DegV; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: HMPREF3121_06505
symbol: rsfS
gene_biotype: protein_coding
description:
  Ribosome silencing factor RsfS; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: HMPREF3121_06515
symbol: moaA
gene_biotype: protein_coding
description:
  Nicotinate-nicotinamide nucleotide adenylyltransferase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: HMPREF3121_06525
symbol: OFU55179.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06530
symbol: OFU55170.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: HMPREF3121_06535
symbol: OFU55180.1
gene_biotype: protein_coding
description:
  Cyclic pyranopterin monophosphate synthase accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06545
symbol: OFU55181.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06555
symbol: OFU55173.1
gene_biotype: protein_coding
description:
  Nitrate reductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: HMPREF3121_06560
symbol: narY
gene_biotype: protein_coding
description:
  With NarZV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06570
symbol: OFU55175.1
gene_biotype: protein_coding
description:
  Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06585
symbol: OFU55183.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: HMPREF3121_06605
symbol: gltX
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: HMPREF3121_06630
symbol: OFU55120.1
gene_biotype: protein_coding
description:
  2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06640
symbol: OFU55122.1
gene_biotype: protein_coding
description:
  Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06690
symbol: OFU55019.1
gene_biotype: protein_coding
description:
  Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: HMPREF3121_06700
symbol: OFU55021.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: HMPREF3121_06720
symbol: OFU55025.1
gene_biotype: protein_coding
description:
  Lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06740
symbol: OFU55029.1
gene_biotype: protein_coding
description:
  Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: HMPREF3121_06755
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily.


ensembl_gene_id: HMPREF3121_06770
symbol: OFU55035.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.


ensembl_gene_id: HMPREF3121_06775
symbol: OFU55045.1
gene_biotype: protein_coding
description:
  Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06790
symbol: HMPREF3121_06790
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06795
symbol: OFU55038.1
gene_biotype: protein_coding
description:
  acetyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06820
symbol: OFU55042.1
gene_biotype: protein_coding
description:
  Iron-enterobactin transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06830
symbol: OFU55043.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: HMPREF3121_06835
symbol: OFU55047.1
gene_biotype: protein_coding
description:
  Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06865
symbol: OFU54982.1
gene_biotype: protein_coding
description:
  Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06885
symbol: OFU54985.1
gene_biotype: protein_coding
description:
  ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06895
symbol: OFU55008.1
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Involved in the biosynthesis of phosphatidylinositol mannosides (PIMs); the enzyme from Mycobacterium tuberculosis can phosphorylate a variety of amphipathic lipids; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06905
symbol: OFU55009.1
gene_biotype: protein_coding
description:
  Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06910
symbol: OFU54988.1
gene_biotype: protein_coding
description:
  3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06930
symbol: OFU55010.1
gene_biotype: protein_coding
description:
  Multidrug DMT transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: HMPREF3121_06940
symbol: OFU55011.1
gene_biotype: protein_coding
description:
  Gamma carbonic anhydrase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06960
symbol: OFU55013.1
gene_biotype: protein_coding
description:
  Nicotinamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06965
symbol: OFU54995.1
gene_biotype: protein_coding
description:
  Tetrameric acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06975
symbol: HMPREF3121_06975
gene_biotype: protein_coding
description:
  ABC transporter; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06980
symbol: zupT
gene_biotype: protein_coding
description:
  Zinc transporter ZupT; Mediates zinc uptake. May also transport other divalent cations; Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.


ensembl_gene_id: HMPREF3121_06985
symbol: OFU54996.1
gene_biotype: protein_coding
description:
  GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_06990
symbol: OFU54997.1
gene_biotype: protein_coding
description:
  Guanosine monophosphate reductase; Catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07055
symbol: OFU54749.1
gene_biotype: protein_coding
description:
  DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07060
symbol: OFU54750.1
gene_biotype: protein_coding
description:
  Phosphoglucomutase, alpha-D-glucose phosphate-specific; Catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07065
symbol: crcB
gene_biotype: protein_coding
description:
  Hypothetical protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: HMPREF3121_07070
symbol: OFU54752.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity.


ensembl_gene_id: HMPREF3121_07085
symbol: OFU54754.1
gene_biotype: protein_coding
description:
  Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07090
symbol: OFU54758.1
gene_biotype: protein_coding
description:
  Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07115
symbol: HMPREF3121_07115
gene_biotype: protein_coding
description:
  ABC transporter permease; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07120
symbol: OFU54518.1
gene_biotype: protein_coding
description:
  Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07125
symbol: OFU54519.1
gene_biotype: protein_coding
description:
  Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07160
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: HMPREF3121_07165
symbol: OFU54423.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: HMPREF3121_07170
symbol: OFU54424.1
gene_biotype: protein_coding
description:
  Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.


ensembl_gene_id: HMPREF3121_07180
symbol: OFU54425.1
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07190
symbol: OFU54391.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: HMPREF3121_07195
symbol: nnrD
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.


ensembl_gene_id: HMPREF3121_07200
symbol: OFU54377.1
gene_biotype: protein_coding
description:
  Abortive phage resistance protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_07215
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: HMPREF3121_07240
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: HMPREF3121_07245
symbol: rpsI
gene_biotype: protein_coding
description:
  30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: HMPREF3121_07250
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: HMPREF3121_07255
symbol: OFU54387.1
gene_biotype: protein_coding
description:
  Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.


ensembl_gene_id: HMPREF3121_07260
symbol: OFU54388.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.


ensembl_gene_id: HMPREF3121_07285
symbol: OFU54252.1
gene_biotype: protein_coding
description:
  Gluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07290
symbol: OFU54256.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: HMPREF3121_07305
symbol: OFU54255.1
gene_biotype: protein_coding
description:
  Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_07335
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: HMPREF3121_07345
symbol: OFU53947.1
gene_biotype: protein_coding
description:
  Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: HMPREF3121_07360
symbol: HMPREF3121_07360
gene_biotype: protein_coding
description:
  Zinc ABC transporter permease; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07380
symbol: OFU53951.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the type-B carboxylesterase/lipase family.


ensembl_gene_id: HMPREF3121_07385
symbol: OFU53952.1
gene_biotype: protein_coding
description:
  Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07390
symbol: ispE
gene_biotype: protein_coding
description:
  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: HMPREF3121_07405
symbol: OFU53956.1
gene_biotype: protein_coding
description:
  Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07415
symbol: OFU53958.1
gene_biotype: protein_coding
description:
  Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07425
symbol: HMPREF3121_07425
gene_biotype: protein_coding
description:
  ABC transporter permease; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07430
symbol: OFU53959.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.


ensembl_gene_id: HMPREF3121_07445
symbol: rsmA
gene_biotype: protein_coding
description:
  16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: HMPREF3121_07450
symbol: OFU53963.1
gene_biotype: protein_coding
description:
  Resuscitation-promoting factor RpfB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07465
symbol: metG
gene_biotype: protein_coding
description:
  methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: HMPREF3121_07500
symbol: OFU53992.1
gene_biotype: protein_coding
description:
  Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: HMPREF3121_07510
symbol: rsmI
gene_biotype: protein_coding
description:
  rRNA (cytidine-2'-O-)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: HMPREF3121_07515
symbol: OFU53972.1
gene_biotype: protein_coding
description:
  Dolichyl-phosphate-mannose--protein mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07545
symbol: HMPREF3121_07545
gene_biotype: protein_coding
description:
  GNAT family acetyltransferase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: HMPREF3121_07550
symbol: OFU53977.1
gene_biotype: protein_coding
description:
  UDP-glucose pyrophosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07555
symbol: OFU53978.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: HMPREF3121_07565
symbol: mscL
gene_biotype: protein_coding
description:
  Mechanosensitive ion channel protein MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: HMPREF3121_07570
symbol: OFU53981.1
gene_biotype: protein_coding
description:
  Molybdopterin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07580
symbol: OFU53996.1
gene_biotype: protein_coding
description:
  Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07590
symbol: rpmF
gene_biotype: protein_coding
description:
  50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: HMPREF3121_07595
symbol: rpmE2
gene_biotype: protein_coding
description:
  50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07600
symbol: rpmB
gene_biotype: protein_coding
description:
  50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: HMPREF3121_07605
symbol: rpmG
gene_biotype: protein_coding
description:
  50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: HMPREF3121_07610
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: HMPREF3121_07615
symbol: rpsR
gene_biotype: protein_coding
description:
  30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: HMPREF3121_07620
symbol: OFU53909.1
gene_biotype: protein_coding
description:
  Auxin Efflux carrier; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07625
symbol: OFU53910.1
gene_biotype: protein_coding
description:
  TIGR03089 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07680
symbol: purE
gene_biotype: protein_coding
description:
  N5-carboxyaminoimidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: HMPREF3121_07685
symbol: purK
gene_biotype: protein_coding
description:
  5-(carboxyamino)imidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: HMPREF3121_07690
symbol: OFU53920.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0371 family.


ensembl_gene_id: HMPREF3121_07705
symbol: OFU53923.1
gene_biotype: protein_coding
description:
  biotin--[acetyl-CoA-carboxylase] ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07725
symbol: OFU53925.1
gene_biotype: protein_coding
description:
  Septum formation inhibitor Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: HMPREF3121_07735
symbol: OFU53927.1
gene_biotype: protein_coding
description:
  Thiosulfate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07740
symbol: OFU53928.1
gene_biotype: protein_coding
description:
  acetyl-/propionyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07745
symbol: OFU53857.1
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: HMPREF3121_07750
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: HMPREF3121_07765
symbol: ldh
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.


ensembl_gene_id: HMPREF3121_07775
symbol: OFU53862.1
gene_biotype: protein_coding
description:
  Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07790
symbol: OFU53865.1
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07795
symbol: OFU53886.1
gene_biotype: protein_coding
description:
  LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07800
symbol: OFU53866.1
gene_biotype: protein_coding
description:
  Fructosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the fructosamine kinase family.


ensembl_gene_id: HMPREF3121_07810
symbol: OFU53868.1
gene_biotype: protein_coding
description:
  Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07830
symbol: OFU53887.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: HMPREF3121_07845
symbol: OFU53873.1
gene_biotype: protein_coding
description:
  Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07850
symbol: serS
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: HMPREF3121_07860
symbol: HMPREF3121_07860
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07870
symbol: OFU53876.1
gene_biotype: protein_coding
description:
  UDP-galactopyranose mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07890
symbol: OFU53890.1
gene_biotype: protein_coding
description:
  Phosphoribose diphosphate--decaprenyl-phosphate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiA prenyltransferase family.


ensembl_gene_id: HMPREF3121_07910
symbol: OFU53882.1
gene_biotype: protein_coding
description:
  Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07915
symbol: OFU53883.1
gene_biotype: protein_coding
description:
  acyl-CoA synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07920
symbol: OFU53884.1
gene_biotype: protein_coding
description:
  Polyketide synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_07925
symbol: OFU53769.1
gene_biotype: protein_coding
description:
  Primosome assembly protein PriA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_07930
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: HMPREF3121_07935
symbol: OFU53771.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: HMPREF3121_07940
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: HMPREF3121_07950
symbol: OFU53774.1
gene_biotype: protein_coding
description:
  Integration host factor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07955
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OMP decarboxylase family. Type 2 subfamily.


ensembl_gene_id: HMPREF3121_07960
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl phosphate synthase large subunit; Four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_07965
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarA family.


ensembl_gene_id: HMPREF3121_07970
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: HMPREF3121_07975
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: HMPREF3121_07980
symbol: pyrR
gene_biotype: protein_coding
description:
  Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.


ensembl_gene_id: HMPREF3121_07990
symbol: OFU53781.1
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08000
symbol: efp
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: HMPREF3121_08005
symbol: OFU53783.1
gene_biotype: protein_coding
description:
  X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08010
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: HMPREF3121_08015
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: HMPREF3121_08020
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: HMPREF3121_08025
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: HMPREF3121_08035
symbol: OFU53789.1
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the shikimate dehydrogenase family.


ensembl_gene_id: HMPREF3121_08040
symbol: mltG
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: HMPREF3121_08045
symbol: OFU53790.1
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvA; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: HMPREF3121_08050
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: HMPREF3121_08055
symbol: OFU53792.1
gene_biotype: protein_coding
description:
  AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08065
symbol: aspS
gene_biotype: protein_coding
description:
  aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: HMPREF3121_08070
symbol: OFU53795.1
gene_biotype: protein_coding
description:
  Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08090
symbol: OFU53799.1
gene_biotype: protein_coding
description:
  5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08100
symbol: hisS
gene_biotype: protein_coding
description:
  histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08110
symbol: OFU53803.1
gene_biotype: protein_coding
description:
  Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08115
symbol: OFU53804.1
gene_biotype: protein_coding
description:
  GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: HMPREF3121_08120
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: HMPREF3121_08125
symbol: secF
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: HMPREF3121_08130
symbol: secD
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: HMPREF3121_08140
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: HMPREF3121_08145
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: HMPREF3121_08150
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: HMPREF3121_08170
symbol: pdxT
gene_biotype: protein_coding
description:
  Glutamine amidotransferase subunit PdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: HMPREF3121_08175
symbol: OFU53813.1
gene_biotype: protein_coding
description:
  acyl-CoA thioesterase II; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08185
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: HMPREF3121_08190
symbol: OFU53816.1
gene_biotype: protein_coding
description:
  NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08200
symbol: OFU53818.1
gene_biotype: protein_coding
description:
  Phosphatidylinositol mannoside acyltransferase; Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08205
symbol: OFU53819.1
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: HMPREF3121_08210
symbol: OFU53820.1
gene_biotype: protein_coding
description:
  Diadenosine tetraphosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08215
symbol: thrS
gene_biotype: protein_coding
description:
  threonine--tRNA ligase; Catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3121_08220
symbol: OFU53822.1
gene_biotype: protein_coding
description:
  Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08280
symbol: OFU53680.1
gene_biotype: protein_coding
description:
  Regulator of ribonuclease activity; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.


ensembl_gene_id: HMPREF3121_08285
symbol: secA-2
gene_biotype: protein_coding
description:
  Accessory Sec system translocase SecA2; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: HMPREF3121_08290
symbol: OFU53615.1
gene_biotype: protein_coding
description:
  Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08335
symbol: OFU53621.1
gene_biotype: protein_coding
description:
  Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: HMPREF3121_08350
symbol: OFU53624.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08355
symbol: OFU53625.1
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08360
symbol: OFU53626.1
gene_biotype: protein_coding
description:
  FAD-binding dehydrogenase; Proposed role in polysaccahride synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08365
symbol: OFU53627.1
gene_biotype: protein_coding
description:
  AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08380
symbol: tpx
gene_biotype: protein_coding
description:
  2-Cys peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.


ensembl_gene_id: HMPREF3121_08385
symbol: OFU53629.1
gene_biotype: protein_coding
description:
  Sodium:glutamate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08410
symbol: HMPREF3121_08410
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0312 family.


ensembl_gene_id: HMPREF3121_08420
symbol: rbpA
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.


ensembl_gene_id: HMPREF3121_08425
symbol: OFU53636.1
gene_biotype: protein_coding
description:
  Polyprenol monophosphomannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08435
symbol: HMPREF3121_08435
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08440
symbol: cobN
gene_biotype: protein_coding
description:
  Cobaltochelatase subunit CobN; With CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08445
symbol: OFU53639.1
gene_biotype: protein_coding
description:
  precorrin-3B synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08450
symbol: cobH
gene_biotype: protein_coding
description:
  Catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08460
symbol: OFU53642.1
gene_biotype: protein_coding
description:
  precorrin-6A reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08465
symbol: OFU53643.1
gene_biotype: protein_coding
description:
  Precorrin-4 C(11)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: HMPREF3121_08480
symbol: OFU53645.1
gene_biotype: protein_coding
description:
  Peptidase M24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family.


ensembl_gene_id: HMPREF3121_08505
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: HMPREF3121_08510
symbol: tatA
gene_biotype: protein_coding
description:
  Preprotein translocase subunit TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: HMPREF3121_08525
symbol: pafA
gene_biotype: protein_coding
description:
  Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.


ensembl_gene_id: HMPREF3121_08530
symbol: pup
gene_biotype: protein_coding
description:
  Ubiquitin; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family.


ensembl_gene_id: HMPREF3121_08535
symbol: OFU53652.1
gene_biotype: protein_coding
description:
  Proteasome accessory factor PafA2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08545
symbol: HMPREF3121_08545
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.


ensembl_gene_id: HMPREF3121_08550
symbol: OFU53689.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08555
symbol: OFU53654.1
gene_biotype: protein_coding
description:
  Multidrug RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08565
symbol: aspA-2
gene_biotype: protein_coding
description:
  Aspartate ammonia-lyase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08570
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: HMPREF3121_08575
symbol: hisE
gene_biotype: protein_coding
description:
  phosphoribosyl-ATP pyrophosphatase; Catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08595
symbol: OFU53659.1
gene_biotype: protein_coding
description:
  Metal-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08600
symbol: OFU53660.1
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: HMPREF3121_08605
symbol: mshC
gene_biotype: protein_coding
description:
  cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.


ensembl_gene_id: HMPREF3121_08610
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: HMPREF3121_08625
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: HMPREF3121_08630
symbol: OFU53696.1
gene_biotype: protein_coding
description:
  Kinase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08640
symbol: OFU53697.1
gene_biotype: protein_coding
description:
  Cardiolipin synthase A; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.


ensembl_gene_id: HMPREF3121_08645
symbol: OFU53698.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08655
symbol: OFU53664.1
gene_biotype: protein_coding
description:
  ATPase/protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08660
symbol: OFU53665.1
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08665
symbol: OFU53666.1
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08680
symbol: OFU53699.1
gene_biotype: protein_coding
description:
  Glutathione-dependent reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08710
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: HMPREF3121_08730
symbol: OFU53701.1
gene_biotype: protein_coding
description:
  Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08755
symbol: HMPREF3121_08755
gene_biotype: protein_coding
description:
  Glutamine amidotransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08770
symbol: HMPREF3121_08770
gene_biotype: protein_coding
description:
  Indolepyruvate ferredoxin oxidoreductase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08780
symbol: OFU53538.1
gene_biotype: protein_coding
description:
  Gamma-aminobutyrate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08790
symbol: OFU53540.1
gene_biotype: protein_coding
description:
  Iron-sulfur cluster assembly scaffold protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08795
symbol: OFU53541.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: HMPREF3121_08800
symbol: sufC
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08805
symbol: OFU53543.1
gene_biotype: protein_coding
description:
  Fe-S cluster assembly protein SufD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08810
symbol: OFU53544.1
gene_biotype: protein_coding
description:
  Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08820
symbol: OFU53570.1
gene_biotype: protein_coding
description:
  Alpha 1,6 mannopyranosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08825
symbol: OFU53546.1
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08830
symbol: OFU53547.1
gene_biotype: protein_coding
description:
  Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08840
symbol: OFU53548.1
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08845
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: HMPREF3121_08850
symbol: OFU53549.1
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: HMPREF3121_08855
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.


ensembl_gene_id: HMPREF3121_08860
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: HMPREF3121_08865
symbol: OFU53552.1
gene_biotype: protein_coding
description:
  Oxppcycle protein OpcA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08875
symbol: OFU53573.1
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: HMPREF3121_08880
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.


ensembl_gene_id: HMPREF3121_08885
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: HMPREF3121_08890
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: HMPREF3121_08895
symbol: OFU53574.1
gene_biotype: protein_coding
description:
  Type I glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF3121_08905
symbol: OFU53558.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: HMPREF3121_08915
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: HMPREF3121_08925
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: HMPREF3121_08930
symbol: ribBA
gene_biotype: protein_coding
description:
  Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: HMPREF3121_08935
symbol: OFU53563.1
gene_biotype: protein_coding
description:
  Riboflavin synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08940
symbol: OFU53564.1
gene_biotype: protein_coding
description:
  Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: HMPREF3121_08945
symbol: OFU53565.1
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: HMPREF3121_08950
symbol: OFU53566.1
gene_biotype: protein_coding
description:
  Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: HMPREF3121_08955
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: HMPREF3121_08960
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: HMPREF3121_08970
symbol: OFU53511.1
gene_biotype: protein_coding
description:
  AI-2E family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08980
symbol: ychF
gene_biotype: protein_coding
description:
  SNF family Na(+)-dependent transporter; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: HMPREF3121_08985
symbol: OFU53513.1
gene_biotype: protein_coding
description:
  Plasmid maintenance system killer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_08995
symbol: OFU53515.1
gene_biotype: protein_coding
description:
  GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09000
symbol: argD
gene_biotype: protein_coding
description:
  Acetylornithine aminotransferase; Catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: HMPREF3121_09005
symbol: OFU53499.1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: HMPREF3121_09015
symbol: argG
gene_biotype: protein_coding
description:
  Argininosuccinate synthase; Catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: HMPREF3121_09020
symbol: argH
gene_biotype: protein_coding
description:
  Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09040
symbol: OFU53506.1
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0434 family.


ensembl_gene_id: HMPREF3121_09045
symbol: OFU53507.1
gene_biotype: protein_coding
description:
  3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: HMPREF3121_09050
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: HMPREF3121_09070
symbol: OFU53441.1
gene_biotype: protein_coding
description:
  DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09090
symbol: rpsA
gene_biotype: protein_coding
description:
  30S ribosomal protein S1; In Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09100
symbol: HMPREF3121_09100
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF3121_09120
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: HMPREF3121_09125
symbol: OFU53448.1
gene_biotype: protein_coding
description:
  Stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09130
symbol: OFU53462.1
gene_biotype: protein_coding
description:
  Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09145
symbol: uvrA
gene_biotype: protein_coding
description:
  ABC-ATPase UvrA; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: HMPREF3121_09155
symbol: OFU53452.1
gene_biotype: protein_coding
description:
  Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: HMPREF3121_09165
symbol: infC
gene_biotype: protein_coding
description:
  Hypothetical protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: HMPREF3121_09170
symbol: rpmI
gene_biotype: protein_coding
description:
  50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: HMPREF3121_09175
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: HMPREF3121_09180
symbol: OFU53455.1
gene_biotype: protein_coding
description:
  rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: HMPREF3121_09185
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: HMPREF3121_09190
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: HMPREF3121_09195
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: HMPREF3121_09200
symbol: argJ
gene_biotype: protein_coding
description:
  Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: HMPREF3121_09210
symbol: HMPREF3121_09210
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09240
symbol: OFU53326.1
gene_biotype: protein_coding
description:
  Resuscitation-promoting factor RpfA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09275
symbol: OFU53351.1
gene_biotype: protein_coding
description:
  rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09290
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: HMPREF3121_09295
symbol: OFU53352.1
gene_biotype: protein_coding
description:
  Citrate (Si)-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the citrate synthase family.


ensembl_gene_id: HMPREF3121_09300
symbol: OFU53333.1
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09305
symbol: OFU53334.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase carboxyl transferase subunit alpha/beta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09310
symbol: OFU53335.1
gene_biotype: protein_coding
description:
  Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09340
symbol: OFU53341.1
gene_biotype: protein_coding
description:
  Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamate synthase family.


ensembl_gene_id: HMPREF3121_09355
symbol: OFU53344.1
gene_biotype: protein_coding
description:
  Magnesium-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09365
symbol: OFU53346.1
gene_biotype: protein_coding
description:
  Cation acetate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: HMPREF3121_09370
symbol: OFU53347.1
gene_biotype: protein_coding
description:
  Glycine cleavage system protein T; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09400
symbol: OFU53286.1
gene_biotype: protein_coding
description:
  precorrin-6A synthase (deacetylating); Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09405
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: HMPREF3121_09420
symbol: HMPREF3121_09420
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09440
symbol: OFU53153.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: HMPREF3121_09455
symbol: OFU53098.1
gene_biotype: protein_coding
description:
  Sodium:proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: HMPREF3121_09470
symbol: OFU53154.1
gene_biotype: protein_coding
description:
  DNA repair exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09480
symbol: OFU53102.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0312 family.


ensembl_gene_id: HMPREF3121_09485
symbol: OFU53103.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_09490
symbol: OFU53155.1
gene_biotype: protein_coding
description:
  MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09505
symbol: OFU53104.1
gene_biotype: protein_coding
description:
  Lactate utilization protein B/C; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09510
symbol: OFU53105.1
gene_biotype: protein_coding
description:
  (4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09515
symbol: OFU53106.1
gene_biotype: protein_coding
description:
  Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09520
symbol: argS
gene_biotype: protein_coding
description:
  arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09525
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: HMPREF3121_09530
symbol: OFU53109.1
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09535
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: HMPREF3121_09545
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: HMPREF3121_09550
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: HMPREF3121_09560
symbol: HMPREF3121_09560
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUA5 family.


ensembl_gene_id: HMPREF3121_09565
symbol: OFU53115.1
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09575
symbol: atpB
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: HMPREF3121_09580
symbol: atpE
gene_biotype: protein_coding
description:
  ATP F0F1 synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: HMPREF3121_09585
symbol: atpF
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: HMPREF3121_09590
symbol: atpH
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: HMPREF3121_09595
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: HMPREF3121_09600
symbol: atpG
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: HMPREF3121_09605
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: HMPREF3121_09610
symbol: atpC
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: HMPREF3121_09620
symbol: nucS
gene_biotype: protein_coding
description:
  Endonuclease; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.


ensembl_gene_id: HMPREF3121_09630
symbol: OFU53125.1
gene_biotype: protein_coding
description:
  PTS beta-glucoside transporter subunit EIIBCA; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09650
symbol: OFU53127.1
gene_biotype: protein_coding
description:
  methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09660
symbol: OFU53129.1
gene_biotype: protein_coding
description:
  Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09665
symbol: OFU53130.1
gene_biotype: protein_coding
description:
  TIGR02611 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09675
symbol: glgB
gene_biotype: protein_coding
description:
  Glycogen-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: HMPREF3121_09680
symbol: glgE
gene_biotype: protein_coding
description:
  Alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.


ensembl_gene_id: HMPREF3121_09700
symbol: OFU53134.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09705
symbol: OFU53135.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09710
symbol: OFU53136.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09715
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: HMPREF3121_09725
symbol: OFU53165.1
gene_biotype: protein_coding
description:
  Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09730
symbol: OFU53139.1
gene_biotype: protein_coding
description:
  Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: HMPREF3121_09735
symbol: OFU53140.1
gene_biotype: protein_coding
description:
  Molybdate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09750
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase (NAD(+)) LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: HMPREF3121_09755
symbol: OFU53143.1
gene_biotype: protein_coding
description:
  Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: HMPREF3121_09760
symbol: OFU53144.1
gene_biotype: protein_coding
description:
  Bile acid:sodium symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09765
symbol: OFU53145.1
gene_biotype: protein_coding
description:
  Amino acid-binding ACT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09770
symbol: gatC
gene_biotype: protein_coding
description:
  asparaginyl/glutamyl-tRNA amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: HMPREF3121_09775
symbol: gatA
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: HMPREF3121_09785
symbol: OFU53148.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.


ensembl_gene_id: HMPREF3121_09790
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.


ensembl_gene_id: HMPREF3121_09805
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: HMPREF3121_09825
symbol: OFU53051.1
gene_biotype: protein_coding
description:
  NAD(P)H-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09855
symbol: OFU53064.1
gene_biotype: protein_coding
description:
  Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09880
symbol: OFU53060.1
gene_biotype: protein_coding
description:
  decaprenylphosphoryl-beta-D-ribose oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09895
symbol: OFU53063.1
gene_biotype: protein_coding
description:
  Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09900
symbol: OFU53066.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.


ensembl_gene_id: HMPREF3121_09915
symbol: OFU53040.1
gene_biotype: protein_coding
description:
  Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09920
symbol: OFU53047.1
gene_biotype: protein_coding
description:
  23S rRNA pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09930
symbol: OFU53041.1
gene_biotype: protein_coding
description:
  Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09960
symbol: OFU52997.1
gene_biotype: protein_coding
description:
  Phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: HMPREF3121_09970
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: HMPREF3121_09975
symbol: OFU53000.1
gene_biotype: protein_coding
description:
  Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09980
symbol: OFU53001.1
gene_biotype: protein_coding
description:
  Acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_09995
symbol: ilvD
gene_biotype: protein_coding
description:
  Dihydroxy-acid dehydratase; Catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IlvD/Edd family.


ensembl_gene_id: HMPREF3121_10005
symbol: OFU53006.1
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: HMPREF3121_10035
symbol: OFU52955.1
gene_biotype: protein_coding
description:
  GTP pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10040
symbol: OFU52951.1
gene_biotype: protein_coding
description:
  Malto-oligosyltrehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10055
symbol: OFU52954.1
gene_biotype: protein_coding
description:
  Addiction module antidote protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10060
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: HMPREF3121_10065
symbol: OFU52894.1
gene_biotype: protein_coding
description:
  cob(I)yrinic acid a c-diamide adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: HMPREF3121_10070
symbol: OFU52895.1
gene_biotype: protein_coding
description:
  Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10075
symbol: OFU52896.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10080
symbol: OFU52929.1
gene_biotype: protein_coding
description:
  3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HIBADH-related family.


ensembl_gene_id: HMPREF3121_10090
symbol: OFU52898.1
gene_biotype: protein_coding
description:
  Methylmalonate-semialdehyde dehydrogenase (acylating); Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10095
symbol: OFU52899.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: HMPREF3121_10100
symbol: OFU52900.1
gene_biotype: protein_coding
description:
  Cobalt ABC transporter; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.


ensembl_gene_id: HMPREF3121_10105
symbol: OFU52901.1
gene_biotype: protein_coding
description:
  Cobalt ECF transporter T component CbiQ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10110
symbol: cbiN
gene_biotype: protein_coding
description:
  Cobalt ABC transporter substrate-binding protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.


ensembl_gene_id: HMPREF3121_10120
symbol: HMPREF3121_10120
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CbiM; Cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: HMPREF3121_10125
symbol: OFU52904.1
gene_biotype: protein_coding
description:
  Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10180
symbol: OFU52909.1
gene_biotype: protein_coding
description:
  Cytochrome BD ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10185
symbol: OFU52931.1
gene_biotype: protein_coding
description:
  Cytochrome C oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10195
symbol: OFU52910.1
gene_biotype: protein_coding
description:
  Thiol reductant ABC exporter subunit CydC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10210
symbol: OFU52912.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF3121_10225
symbol: OFU52933.1
gene_biotype: protein_coding
description:
  Nitrogen fixation protein NifR; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: HMPREF3121_10235
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: HMPREF3121_10240
symbol: OFU52917.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10245
symbol: OFU52918.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: HMPREF3121_10250
symbol: OFU52919.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: HMPREF3121_10255
symbol: mshD
gene_biotype: protein_coding
description:
  Mycothiol synthase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.


ensembl_gene_id: HMPREF3121_10275
symbol: OFU52923.1
gene_biotype: protein_coding
description:
  4-amino-4-deoxychorismate lyase; Catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10280
symbol: OFU52924.1
gene_biotype: protein_coding
description:
  Folate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.


ensembl_gene_id: HMPREF3121_10290
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10295
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: HMPREF3121_10305
symbol: OFU52936.1
gene_biotype: protein_coding
description:
  acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10310
symbol: OFU52928.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: HMPREF3121_10325
symbol: OFU52839.1
gene_biotype: protein_coding
description:
  Histidinol-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10340
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: HMPREF3121_10345
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: HMPREF3121_10350
symbol: OFU52841.1
gene_biotype: protein_coding
description:
  Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: HMPREF3121_10360
symbol: OFU52855.1
gene_biotype: protein_coding
description:
  3-hydroxyisobutyryl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10365
symbol: OFU52843.1
gene_biotype: protein_coding
description:
  DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPG family.


ensembl_gene_id: HMPREF3121_10370
symbol: OFU52844.1
gene_biotype: protein_coding
description:
  Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10395
symbol: OFU52846.1
gene_biotype: protein_coding
description:
  Catalyzes the oxidation of acetaldehyde, benzaldehyde, propionaldehyde and other aldehydes; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10405
symbol: OFU52848.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: HMPREF3121_10410
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: HMPREF3121_10435
symbol: HMPREF3121_10435
gene_biotype: protein_coding
description:
  ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10450
symbol: OFU52801.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: HMPREF3121_10460
symbol: OFU52803.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: HMPREF3121_10480
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: HMPREF3121_10485
symbol: rpmD
gene_biotype: protein_coding
description:
  50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10490
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: HMPREF3121_10495
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: HMPREF3121_10500
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: HMPREF3121_10505
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: HMPREF3121_10510
symbol: OFU52633.1
gene_biotype: protein_coding
description:
  Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10515
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: HMPREF3121_10520
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: HMPREF3121_10525
symbol: rplN
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: HMPREF3121_10535
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: HMPREF3121_10540
symbol: rpmC
gene_biotype: protein_coding
description:
  50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: HMPREF3121_10545
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: HMPREF3121_10550
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: HMPREF3121_10555
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: HMPREF3121_10560
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: HMPREF3121_10565
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: HMPREF3121_10570
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: HMPREF3121_10580
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: HMPREF3121_10585
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: HMPREF3121_10590
symbol: tuf
gene_biotype: protein_coding
description:
  Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: HMPREF3121_10595
symbol: fusA
gene_biotype: protein_coding
description:
  Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: HMPREF3121_10600
symbol: rpsG
gene_biotype: protein_coding
description:
  30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: HMPREF3121_10605
symbol: rpsL
gene_biotype: protein_coding
description:
  30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: HMPREF3121_10670
symbol: thiC
gene_biotype: protein_coding
description:
  Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.


ensembl_gene_id: HMPREF3121_10675
symbol: OFU52675.1
gene_biotype: protein_coding
description:
  Sodium:phosphate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10695
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: HMPREF3121_10710
symbol: rplL
gene_biotype: protein_coding
description:
  Hypothetical protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: HMPREF3121_10715
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: HMPREF3121_10725
symbol: rplA
gene_biotype: protein_coding
description:
  50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: HMPREF3121_10730
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: HMPREF3121_10735
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: HMPREF3121_10745
symbol: HMPREF3121_10745
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10760
symbol: OFU52621.1
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10765
symbol: OFU52622.1
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: HMPREF3121_10770
symbol: OFU52589.1
gene_biotype: protein_coding
description:
  Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: HMPREF3121_10780
symbol: folE
gene_biotype: protein_coding
description:
  Cell division protein FtsH; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10785
symbol: OFU52588.1
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_10795
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: HMPREF3121_10810
symbol: OFU52581.1
gene_biotype: protein_coding
description:
  Ferrous iron transporter B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: HMPREF3121_10820
symbol: hflX
gene_biotype: protein_coding
description:
  Hypothetical protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: HMPREF3121_10830
symbol: OFU52532.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10840
symbol: nadE
gene_biotype: protein_coding
description:
  NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: HMPREF3121_10845
symbol: OFU52511.1
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: HMPREF3121_10850
symbol: rpmJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: HMPREF3121_10865
symbol: OFU52515.1
gene_biotype: protein_coding
description:
  Ribonucleotide-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: HMPREF3121_10870
symbol: OFU52516.1
gene_biotype: protein_coding
description:
  Ribonucleotide-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: HMPREF3121_10875
symbol: OFU52517.1
gene_biotype: protein_coding
description:
  Cytochrome ubiquinol oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: HMPREF3121_10885
symbol: OFU52519.1
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10895
symbol: OFU52521.1
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: HMPREF3121_10900
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: HMPREF3121_10915
symbol: HMPREF3121_10915
gene_biotype: protein_coding
description:
  Peptidase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10930
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: HMPREF3121_10935
symbol: OFU52526.1
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: HMPREF3121_10955
symbol: OFU52527.1
gene_biotype: protein_coding
description:
  Phosphate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10965
symbol: OFU52537.1
gene_biotype: protein_coding
description:
  3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_10975
symbol: OFU52538.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: HMPREF3121_10990
symbol: OFU52540.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11005
symbol: OFU52500.1
gene_biotype: protein_coding
description:
  Dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11010
symbol: OFU52484.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11015
symbol: OFU52485.1
gene_biotype: protein_coding
description:
  Subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11020
symbol: OFU52486.1
gene_biotype: protein_coding
description:
  Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11025
symbol: OFU52487.1
gene_biotype: protein_coding
description:
  Subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11040
symbol: OFU52490.1
gene_biotype: protein_coding
description:
  Subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11045
symbol: OFU52491.1
gene_biotype: protein_coding
description:
  Carboxylate--amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.


ensembl_gene_id: HMPREF3121_11090
symbol: OFU52421.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the heat shock protein 70 family.


ensembl_gene_id: HMPREF3121_11145
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: HMPREF3121_11170
symbol: OFU52434.1
gene_biotype: protein_coding
description:
  NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11195
symbol: ackA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: HMPREF3121_11200
symbol: OFU52439.1
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11215
symbol: HMPREF3121_11215
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11220
symbol: OFU52408.1
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: HMPREF3121_11225
symbol: OFU52411.1
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11235
symbol: OFU52410.1
gene_biotype: protein_coding
description:
  Sulfite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: HMPREF3121_11260
symbol: OFU52315.1
gene_biotype: protein_coding
description:
  Acetoin utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11270
symbol: purT
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.


ensembl_gene_id: HMPREF3121_11280
symbol: OFU52344.1
gene_biotype: protein_coding
description:
  Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11290
symbol: OFU52320.1
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: HMPREF3121_11300
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: HMPREF3121_11335
symbol: OFU52328.1
gene_biotype: protein_coding
description:
  Glycoside hydrolase family 76; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11340
symbol: OFU52329.1
gene_biotype: protein_coding
description:
  RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11350
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: HMPREF3121_11360
symbol: OFU52333.1
gene_biotype: protein_coding
description:
  Rhodanese; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11365
symbol: OFU52334.1
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: HMPREF3121_11370
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: HMPREF3121_11380
symbol: OFU52346.1
gene_biotype: protein_coding
description:
  Class I fructose-bisphosphate aldolase; Catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11385
symbol: OFU52337.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11410
symbol: grpE
gene_biotype: protein_coding
description:
  Nucleotide exchange factor GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds [...]


ensembl_gene_id: HMPREF3121_11485
symbol: kgd
gene_biotype: protein_coding
description:
  Alpha-ketoglutarate decarboxylase; Kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11495
symbol: OFU52110.1
gene_biotype: protein_coding
description:
  Magnesium and cobalt transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11510
symbol: HMPREF3121_11510
gene_biotype: protein_coding
description:
  Magnesium transporter; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11515
symbol: OFU52113.1
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: HMPREF3121_11530
symbol: HMPREF3121_11530
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatB; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11540
symbol: OFU52117.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor SigE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: HMPREF3121_11545
symbol: OFU52144.1
gene_biotype: protein_coding
description:
  Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11550
symbol: OFU52145.1
gene_biotype: protein_coding
description:
  Peptidase C56; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11555
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: HMPREF3121_11560
symbol: OFU52119.1
gene_biotype: protein_coding
description:
  Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11565
symbol: OFU52146.1
gene_biotype: protein_coding
description:
  Alpha-acetolactate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alpha-acetolactate decarboxylase family.


ensembl_gene_id: HMPREF3121_11585
symbol: OFU52147.1
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11590
symbol: OFU52123.1
gene_biotype: protein_coding
description:
  Rossman fold protein, TIGR00730 family; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.


ensembl_gene_id: HMPREF3121_11600
symbol: OFU52125.1
gene_biotype: protein_coding
description:
  Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11605
symbol: OFU52126.1
gene_biotype: protein_coding
description:
  Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11630
symbol: OFU52130.1
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: HMPREF3121_11650
symbol: OFU52132.1
gene_biotype: protein_coding
description:
  GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11685
symbol: cobB-2
gene_biotype: protein_coding
description:
  NAD-dependent deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sirtuin family. Class III subfamily.


ensembl_gene_id: HMPREF3121_11700
symbol: OFU52138.1
gene_biotype: protein_coding
description:
  Para-aminobenzoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11735
symbol: OFU52058.1
gene_biotype: protein_coding
description:
  Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11750
symbol: OFU52061.1
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11755
symbol: OFU52062.1
gene_biotype: protein_coding
description:
  Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11795
symbol: OFU51860.1
gene_biotype: protein_coding
description:
  NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.


ensembl_gene_id: HMPREF3121_11800
symbol: OFU51880.1
gene_biotype: protein_coding
description:
  CCA tRNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: HMPREF3121_11805
symbol: OFU51861.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: HMPREF3121_11815
symbol: HMPREF3121_11815
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter permease; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11835
symbol: leuS
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3121_11855
symbol: OFU51868.1
gene_biotype: protein_coding
description:
  Inositol-3-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11870
symbol: HMPREF3121_11870
gene_biotype: protein_coding
description:
  Penicillin-binding protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11880
symbol: OFU51872.1
gene_biotype: protein_coding
description:
  Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11890
symbol: OFU51874.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: HMPREF3121_11895
symbol: OFU51875.1
gene_biotype: protein_coding
description:
  Acyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3121_11905
symbol: OFU51877.1
gene_biotype: protein_coding
description:
  Thiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11925
symbol: OFU51841.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: HMPREF3121_11930
symbol: tadA
gene_biotype: protein_coding
description:
  tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: HMPREF3121_11935
symbol: OFU51843.1
gene_biotype: protein_coding
description:
  tRNA adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11940
symbol: OFU51844.1
gene_biotype: protein_coding
description:
  Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11945
symbol: OFU51845.1
gene_biotype: protein_coding
description:
  Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.


ensembl_gene_id: HMPREF3121_11970
symbol: OFU51849.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3121_11990
symbol: pat
gene_biotype: protein_coding
description:
  Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.


