iDEP-READS: Uniformly Processed Public RNA Sequencing Data

Download counts data for 23,419 human and mouse datasets from ARCHS4 v10 and 29,662 datasets from DEE2 for 9 model organisms. Click here to see the number of datasets and samples by species.
To begin, select a species and a source below. Then, select a row on the table.


Upload 'counts' file to iDEP for analysis
Download Gene-Level Counts
Download Transcript-Level Counts

Gene info
Transcript info
Summary MetaData
QC Matrix

Data Set Statistics and Details

ARCHS4 v6 data downloaded May 27, 2021. DEE2 metadata was downloaded August 4, 2021. DEE2 expression data is downloaded via API.