# geneInfo

ensembl_gene_id: NT01SARS_0001
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00485.


ensembl_gene_id: NT01SARS_0003
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.


ensembl_gene_id: NT01SARS_0004
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: NT01SARS_0005
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: NT01SARS_0006
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: NT01SARS_0007
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: NT01SARS_0008
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: NT01SARS_0009
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: NT01SARS_0010
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: NT01SARS_0011
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: NT01SARS_0012
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: NT01SARS_0013
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: NT01SARS_0014
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: NT01SARS_0015
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: NT01SARS_0017
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: NT01SARS_0018
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: NT01SARS_0019
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: NT01SARS_0020
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: NT01SARS_0021
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: NT01SARS_0022
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: NT01SARS_0023
symbol: rpmC
gene_biotype: protein_coding
description:
  Ribosomal protein L29; Identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: NT01SARS_0024
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: NT01SARS_0025
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: NT01SARS_0026
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: NT01SARS_0027
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: NT01SARS_0028
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: NT01SARS_0029
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: NT01SARS_0030
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: NT01SARS_0031
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: NT01SARS_0032
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: NT01SARS_0033
symbol: EJP71564.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Identified by glimmer; putative; Belongs to the universal ribosomal protein uL30 family.


ensembl_gene_id: NT01SARS_0034
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: NT01SARS_0035
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: NT01SARS_0036
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: NT01SARS_0037
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: NT01SARS_0038
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: NT01SARS_0039
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: NT01SARS_0040
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: NT01SARS_0041
symbol: rplQ
gene_biotype: protein_coding
description:
  Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.


ensembl_gene_id: NT01SARS_0042
symbol: EJP71573.1
gene_biotype: protein_coding
description:
  Single-strand binding family protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: NT01SARS_0044
symbol: fabF
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: NT01SARS_0046
symbol: fabA
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.


ensembl_gene_id: NT01SARS_0047
symbol: EJP71578.1
gene_biotype: protein_coding
description:
  Octaprenyl-diphosphate synthase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: NT01SARS_0048
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: NT01SARS_0049
symbol: rpmA
gene_biotype: protein_coding
description:
  Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: NT01SARS_0051
symbol: cgtA
gene_biotype: protein_coding
description:
  Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: NT01SARS_0052
symbol: EJP71583.1
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: NT01SARS_0055
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: NT01SARS_0058
symbol: bamE
gene_biotype: protein_coding
description:
  SmpA/OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: NT01SARS_0060
symbol: fur
gene_biotype: protein_coding
description:
  Ferric uptake regulation protein; Identified by match to protein family HMM PF01475; Belongs to the Fur family.


ensembl_gene_id: NT01SARS_0061
symbol: grpE
gene_biotype: protein_coding
description:
  Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...]


ensembl_gene_id: NT01SARS_0063
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: NT01SARS_0064
symbol: EJP71593.1
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.


ensembl_gene_id: NT01SARS_0065
symbol: rpsB
gene_biotype: protein_coding
description:
  Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: NT01SARS_0066
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: NT01SARS_0068
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: NT01SARS_0069
symbol: uppS
gene_biotype: protein_coding
description:
  Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.


ensembl_gene_id: NT01SARS_0071
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: NT01SARS_0072
symbol: rseP
gene_biotype: protein_coding
description:
  RIP metalloprotease RseP; Identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054.


ensembl_gene_id: NT01SARS_0073
symbol: yaeT
gene_biotype: protein_coding
description:
  Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: NT01SARS_0075
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: NT01SARS_0076
symbol: EJP71605.1
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Identified by match to protein family HMM PF07977.


ensembl_gene_id: NT01SARS_0077
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: NT01SARS_0078
symbol: lpxB
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: NT01SARS_0080
symbol: EJP71609.1
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594.


ensembl_gene_id: NT01SARS_0081
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: NT01SARS_0082
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: NT01SARS_0083
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: NT01SARS_0086
symbol: rimI
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.


ensembl_gene_id: NT01SARS_0087
symbol: EJP71616.1
gene_biotype: protein_coding
description:
  Phospholipid hydroperoxide glutathione peroxidase, ic; Identified by match to protein family HMM PF00255; Belongs to the glutathione peroxidase family.


ensembl_gene_id: NT01SARS_0088
symbol: valS
gene_biotype: protein_coding
description:
  valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: NT01SARS_0090
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: NT01SARS_0095
symbol: EJP71624.1
gene_biotype: protein_coding
description:
  Inner membrane transporter YbgH; Identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924.


ensembl_gene_id: NT01SARS_0096
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: NT01SARS_0098
symbol: dapD
gene_biotype: protein_coding
description:
  Transferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.


ensembl_gene_id: NT01SARS_0099
symbol: glnD
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.


ensembl_gene_id: NT01SARS_0100
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: NT01SARS_0101
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, small subunit; Identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; Belongs to the CarA family.


ensembl_gene_id: NT01SARS_0102
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, large subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; Belongs to the CarB family.


ensembl_gene_id: NT01SARS_0103
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: NT01SARS_0105
symbol: ftsH
gene_biotype: protein_coding
description:
  Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: NT01SARS_0106
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: NT01SARS_0107
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419.


ensembl_gene_id: NT01SARS_0108
symbol: secG
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: NT01SARS_0111
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: NT01SARS_0112
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription elongation protein NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: NT01SARS_0113
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: NT01SARS_0114
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: NT01SARS_0115
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: NT01SARS_0116
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: NT01SARS_0117
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: NT01SARS_0121
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: NT01SARS_0122
symbol: pth
gene_biotype: protein_coding
description:
  aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: NT01SARS_0123
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: NT01SARS_0124
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: NT01SARS_0126
symbol: ispE
gene_biotype: protein_coding
description:
  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: NT01SARS_0128
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: NT01SARS_0129
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: NT01SARS_0130
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534.


ensembl_gene_id: NT01SARS_0131
symbol: selO
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: NT01SARS_0135
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: NT01SARS_0136
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: NT01SARS_0137
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: NT01SARS_0138
symbol: EJP71663.1
gene_biotype: protein_coding
description:
  Rod shape-determining protein MreB; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.


ensembl_gene_id: NT01SARS_0143
symbol: rpoN
gene_biotype: protein_coding
description:
  RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: NT01SARS_0144
symbol: EJP71669.1
gene_biotype: protein_coding
description:
  Lipopolysaccharide ABC transporter, ATP-binding protein LptB; Identified by match to protein family HMM PF00005.


ensembl_gene_id: NT01SARS_0146
symbol: kdsD
gene_biotype: protein_coding
description:
  Arabinose 5-phosphate isomerase; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393.


ensembl_gene_id: NT01SARS_0150
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: NT01SARS_0152
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: NT01SARS_0153
symbol: rpsI
gene_biotype: protein_coding
description:
  Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: NT01SARS_0154
symbol: petA
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: NT01SARS_0155
symbol: EJP71680.1
gene_biotype: protein_coding
description:
  Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: NT01SARS_0159
symbol: rsmI
gene_biotype: protein_coding
description:
  uroporphyrin-III C/tetrapyrrole methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: NT01SARS_0162
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: NT01SARS_0163
symbol: mraW
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: NT01SARS_0165
symbol: EJP71689.1
gene_biotype: protein_coding
description:
  Putative penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.


ensembl_gene_id: NT01SARS_0166
symbol: EJP71690.1
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085; Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: NT01SARS_0167
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: NT01SARS_0168
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: NT01SARS_0169
symbol: EJP71693.1
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Identified by match to protein family HMM PF08245.


ensembl_gene_id: NT01SARS_0170
symbol: ftsW
gene_biotype: protein_coding
description:
  Cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family.


ensembl_gene_id: NT01SARS_0171
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: NT01SARS_0173
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: NT01SARS_0175
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: NT01SARS_0177
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: NT01SARS_0179
symbol: dnaB
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: NT01SARS_0180
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: NT01SARS_0181
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: NT01SARS_0182
symbol: kdsA
gene_biotype: protein_coding
description:
  3-deoxy-8-phosphooctulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01362; Belongs to the KdsA family.


ensembl_gene_id: NT01SARS_0183
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.


ensembl_gene_id: NT01SARS_0185
symbol: ispF
gene_biotype: protein_coding
description:
  Bifunctional enzyme IspD/ispF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF). Belongs to the IspF family. In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.


ensembl_gene_id: NT01SARS_0186
symbol: surE
gene_biotype: protein_coding
description:
  5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: NT01SARS_0187
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080.


ensembl_gene_id: NT01SARS_0188
symbol: fdxA
gene_biotype: protein_coding
description:
  Ferredoxin-1; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: NT01SARS_0190
symbol: recA
gene_biotype: protein_coding
description:
  RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: NT01SARS_0191
symbol: EJP71715.1
gene_biotype: protein_coding
description:
  3-oxoadipyl-CoA thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: NT01SARS_0192
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.


ensembl_gene_id: NT01SARS_0194
symbol: aspS
gene_biotype: protein_coding
description:
  aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: NT01SARS_0197
symbol: EJP71721.1
gene_biotype: protein_coding
description:
  Thioesterase; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051.


ensembl_gene_id: NT01SARS_0198
symbol: tolQ
gene_biotype: protein_coding
description:
  Protein TolQ; Identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796.


ensembl_gene_id: NT01SARS_0201
symbol: tolB
gene_biotype: protein_coding
description:
  Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: NT01SARS_0202
symbol: pal
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: NT01SARS_0205
symbol: EJP71729.1
gene_biotype: protein_coding
description:
  Peptidase M48, Ste24p; Identified by match to protein family HMM PF01435; match to protein family HMM PF07719.


ensembl_gene_id: NT01SARS_0208
symbol: EJP71732.1
gene_biotype: protein_coding
description:
  Putative peroxiredoxin bcp; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.


ensembl_gene_id: NT01SARS_0210
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: NT01SARS_0212
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081; Belongs to the SAICAR synthetase family.


ensembl_gene_id: NT01SARS_0213
symbol: EJP71736.1
gene_biotype: protein_coding
description:
  HTH-type transcriptional regulator IscR; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.


ensembl_gene_id: NT01SARS_0214
symbol: iscS
gene_biotype: protein_coding
description:
  Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.


ensembl_gene_id: NT01SARS_0216
symbol: EJP71739.1
gene_biotype: protein_coding
description:
  Iron-binding protein IscA; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.


ensembl_gene_id: NT01SARS_0217
symbol: fdx
gene_biotype: protein_coding
description:
  Ferredoxin, 2Fe-2S type, ISC system; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007.


ensembl_gene_id: NT01SARS_0218
symbol: iscX
gene_biotype: protein_coding
description:
  FeS assembly protein IscX; Identified by match to protein family HMM PF04384; match to protein family HMM TIGR03412.


ensembl_gene_id: NT01SARS_0219
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: NT01SARS_0220
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: NT01SARS_0222
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: NT01SARS_0223
symbol: hisS
gene_biotype: protein_coding
description:
  histidine--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.


ensembl_gene_id: NT01SARS_0225
symbol: yfgL
gene_biotype: protein_coding
description:
  Outer membrane assembly lipoprotein YfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: NT01SARS_0226
symbol: engA
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: NT01SARS_0229
symbol: sdhA
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: NT01SARS_0230
symbol: EJP71753.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384.


ensembl_gene_id: NT01SARS_0231
symbol: sucA
gene_biotype: protein_coding
description:
  Oxoglutarate dehydrogenase (succinyl-transferring), E1 component; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239.


ensembl_gene_id: NT01SARS_0232
symbol: sucB
gene_biotype: protein_coding
description:
  Dihydrolipoyllysine-residue succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: NT01SARS_0233
symbol: lpdA
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: NT01SARS_0234
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: NT01SARS_0235
symbol: EJP71759.1
gene_biotype: protein_coding
description:
  Multidrug resistance protein NorM; Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.


ensembl_gene_id: NT01SARS_0236
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA ligase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: NT01SARS_0239
symbol: msrB
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: NT01SARS_0240
symbol: mviN
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: NT01SARS_0241
symbol: ribF
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.


ensembl_gene_id: NT01SARS_0242
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: NT01SARS_0243
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: NT01SARS_0244
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: NT01SARS_0248
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: NT01SARS_0249
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: NT01SARS_0251
symbol: EJP71774.1
gene_biotype: protein_coding
description:
  Inner membrane protein YfjD; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.


ensembl_gene_id: NT01SARS_0254
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: NT01SARS_0255
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: NT01SARS_0256
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: NT01SARS_0257
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: NT01SARS_0258
symbol: EJP71781.1
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: NT01SARS_0259
symbol: EJP71782.1
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447.


ensembl_gene_id: NT01SARS_0260
symbol: thrC
gene_biotype: protein_coding
description:
  Threonine synthase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260.


ensembl_gene_id: NT01SARS_0261
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: NT01SARS_0262
symbol: lysS
gene_biotype: protein_coding
description:
  lysine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: NT01SARS_0264
symbol: EJP71787.1
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily.


ensembl_gene_id: NT01SARS_0265
symbol: EJP71788.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NT01SARS_0266
symbol: EJP71789.1
gene_biotype: protein_coding
description:
  Glutathione S-transferase 2; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.


ensembl_gene_id: NT01SARS_0267
symbol: EJP71790.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: NT01SARS_0268
symbol: EJP71791.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: NT01SARS_0269
symbol: EJP71793.1
gene_biotype: protein_coding
description:
  Molybdenum ABC superfamily ATP binding cassette transporter ModC; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00005.


ensembl_gene_id: NT01SARS_0270
symbol: EJP71792.1
gene_biotype: protein_coding
description:
  Glycerol kinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.


ensembl_gene_id: NT01SARS_0272
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: NT01SARS_0275
symbol: algU
gene_biotype: protein_coding
description:
  RNA polymerase sigma-H factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: NT01SARS_0277
symbol: EJP71799.1
gene_biotype: protein_coding
description:
  Serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family.


ensembl_gene_id: NT01SARS_0278
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: NT01SARS_0279
symbol: EJP71801.1
gene_biotype: protein_coding
description:
  Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.


ensembl_gene_id: NT01SARS_0280
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: NT01SARS_0281
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: NT01SARS_0283
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-[acyl-carrier-protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: NT01SARS_0284
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: NT01SARS_0286
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: NT01SARS_0294
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: NT01SARS_0295
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]


ensembl_gene_id: NT01SARS_0296
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: NT01SARS_0297
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: NT01SARS_0299
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: NT01SARS_0300
symbol: trmJ
gene_biotype: protein_coding
description:
  tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: NT01SARS_0309
symbol: ald
gene_biotype: protein_coding
description:
  Alanine dehydrogenase; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518.


ensembl_gene_id: NT01SARS_0312
symbol: EJP71831.1
gene_biotype: protein_coding
description:
  NAD-dependent epimerase/dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.


ensembl_gene_id: NT01SARS_0313
symbol: EJP71833.1
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199.


ensembl_gene_id: NT01SARS_0316
symbol: EJP71836.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.


ensembl_gene_id: NT01SARS_0317
symbol: EJP71837.1
gene_biotype: protein_coding
description:
  VCBS protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_0329
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: NT01SARS_0332
symbol: pyk
gene_biotype: protein_coding
description:
  Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.


ensembl_gene_id: NT01SARS_0333
symbol: aceE
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring), homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: NT01SARS_0334
symbol: aceF
gene_biotype: protein_coding
description:
  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817.


ensembl_gene_id: NT01SARS_0335
symbol: EJP71853.1
gene_biotype: protein_coding
description:
  Sodium/glucose cotransporter; Identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: NT01SARS_0337
symbol: glk
gene_biotype: protein_coding
description:
  Glucokinase; Identified by match to protein family HMM PF02685; Belongs to the bacterial glucokinase family.


ensembl_gene_id: NT01SARS_0348
symbol: EJP71864.1
gene_biotype: protein_coding
description:
  Type IV pili leader peptidase and methylase; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.


ensembl_gene_id: NT01SARS_0349
symbol: ggt
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; Identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066.


ensembl_gene_id: NT01SARS_0352
symbol: EJP71868.1
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein SrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: NT01SARS_0353
symbol: EJP71869.1
gene_biotype: protein_coding
description:
  Putative multi-sensor signal transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: NT01SARS_0355
symbol: gspD
gene_biotype: protein_coding
description:
  General secretion pathway protein D; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517.


ensembl_gene_id: NT01SARS_0358
symbol: gspG
gene_biotype: protein_coding
description:
  General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.


ensembl_gene_id: NT01SARS_0359
symbol: EJP71875.1
gene_biotype: protein_coding
description:
  Prepilin-type N- cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.


ensembl_gene_id: NT01SARS_0360
symbol: gspI
gene_biotype: protein_coding
description:
  General secretion pathway protein I; Identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532.


ensembl_gene_id: NT01SARS_0366
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase 2; Identified by match to protein family HMM PF03976; match to protein family HMM TIGR03707.


ensembl_gene_id: NT01SARS_0370
symbol: EJP71887.1
gene_biotype: protein_coding
description:
  Epoxide hydrolase 1; Identified by match to protein family HMM PF00561; match to protein family HMM PF06441.


ensembl_gene_id: NT01SARS_0375
symbol: EJP71891.1
gene_biotype: protein_coding
description:
  Transporter, major facilitator family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: NT01SARS_0376
symbol: EJP71892.1
gene_biotype: protein_coding
description:
  Permease, major facilitator superfamily; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: NT01SARS_0383
symbol: EJP71899.1
gene_biotype: protein_coding
description:
  MFS transporter; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_0384
symbol: EJP71900.1
gene_biotype: protein_coding
description:
  Putative ammonium transporter, marine subtype; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00909; match to protein family HMM TIGR03644.


ensembl_gene_id: NT01SARS_0385
symbol: EJP71901.1
gene_biotype: protein_coding
description:
  Nitrogen regulatory protein P-II; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00543.


ensembl_gene_id: NT01SARS_0386
symbol: EJP71902.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.


ensembl_gene_id: NT01SARS_0391
symbol: EJP71907.1
gene_biotype: protein_coding
description:
  Putative ammonium transporter, marine subtype; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR03644.


ensembl_gene_id: NT01SARS_0392
symbol: EJP71908.1
gene_biotype: protein_coding
description:
  Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; Belongs to the P(II) protein family.


ensembl_gene_id: NT01SARS_0393
symbol: EJP71909.1
gene_biotype: protein_coding
description:
  Histidine kinase; Identified by match to protein family HMM PF09694; match to protein family HMM TIGR02001.


ensembl_gene_id: NT01SARS_0394
symbol: EJP71910.1
gene_biotype: protein_coding
description:
  3-hydroxyacyl-CoA dehydrogenase type-2; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NT01SARS_0396
symbol: EJP71912.1
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823.


ensembl_gene_id: NT01SARS_0397
symbol: trxB
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.


ensembl_gene_id: NT01SARS_0398
symbol: ftsK
gene_biotype: protein_coding
description:
  DNA translocase FtsK; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397.


ensembl_gene_id: NT01SARS_0400
symbol: crcB
gene_biotype: protein_coding
description:
  CrcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: NT01SARS_0401
symbol: serS
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: NT01SARS_0404
symbol: EJP71920.1
gene_biotype: protein_coding
description:
  Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.


ensembl_gene_id: NT01SARS_0406
symbol: EJP71921.1
gene_biotype: protein_coding
description:
  Inner membrane transport protein YeiM; Identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670.


ensembl_gene_id: NT01SARS_0412
symbol: EJP71927.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: NT01SARS_0413
symbol: EJP71929.1
gene_biotype: protein_coding
description:
  Putative choline/carnitine/betaine transporter; Identified by match to protein family HMM PF02028; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: NT01SARS_0414
symbol: EJP71930.1
gene_biotype: protein_coding
description:
  TPR repeat domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719.


ensembl_gene_id: NT01SARS_0419
symbol: EJP71936.1
gene_biotype: protein_coding
description:
  Glycine betaine transporter OpuD; Identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: NT01SARS_0422
symbol: EJP71938.1
gene_biotype: protein_coding
description:
  Sulfotransferase; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719.


ensembl_gene_id: NT01SARS_0429
symbol: EJP71945.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor; Identified by match to protein family HMM PF00563.


ensembl_gene_id: NT01SARS_0430
symbol: EJP71946.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: NT01SARS_0431
symbol: EJP71948.1
gene_biotype: protein_coding
description:
  Periplasmic sensor hybrid histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: NT01SARS_0433
symbol: EJP71949.1
gene_biotype: protein_coding
description:
  Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: NT01SARS_0441
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: NT01SARS_0444
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: NT01SARS_0446
symbol: calB
gene_biotype: protein_coding
description:
  Coniferyl-aldehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: NT01SARS_0447
symbol: EJP71962.1
gene_biotype: protein_coding
description:
  LolC/E family lipoprotein releasing system, transmembrane protein; Identified by match to protein family HMM PF02687.


ensembl_gene_id: NT01SARS_0448
symbol: lolD
gene_biotype: protein_coding
description:
  Lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: NT01SARS_0451
symbol: lpxK
gene_biotype: protein_coding
description:
  Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Belongs to the LpxK family.


ensembl_gene_id: NT01SARS_0452
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; Identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466; Belongs to the KdsB family.


ensembl_gene_id: NT01SARS_0457
symbol: etfdh
gene_biotype: protein_coding
description:
  Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.


ensembl_gene_id: NT01SARS_0459
symbol: EJP71974.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein subunit alpha; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.


ensembl_gene_id: NT01SARS_0462
symbol: EJP71977.1
gene_biotype: protein_coding
description:
  Glutathione S-transferase domain protein; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.


ensembl_gene_id: NT01SARS_0463
symbol: EJP71978.1
gene_biotype: protein_coding
description:
  Glutathione S-transferase; Identified by match to protein family HMM PF02798; Belongs to the GST superfamily.


ensembl_gene_id: NT01SARS_0465
symbol: EJP71980.1
gene_biotype: protein_coding
description:
  2-hydroxychromene-2-carboxylate dehydrogenase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_0468
symbol: EJP71983.1
gene_biotype: protein_coding
description:
  N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_0469
symbol: EJP71984.1
gene_biotype: protein_coding
description:
  Dihydroorotate oxidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01180; Belongs to the dihydroorotate dehydrogenase family.


ensembl_gene_id: NT01SARS_0471
symbol: EJP71986.1
gene_biotype: protein_coding
description:
  Rhomboid protease GlpG; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01694.


ensembl_gene_id: NT01SARS_0476
symbol: EJP71991.1
gene_biotype: protein_coding
description:
  Putative branched-chain-amino-acid aminotransferase; Identified by match to protein family HMM PF01063.


ensembl_gene_id: NT01SARS_0483
symbol: EJP71998.1
gene_biotype: protein_coding
description:
  Pyruvate carboxylase subunit B; Identified by match to protein family HMM PF00682; match to protein family HMM PF02436.


ensembl_gene_id: NT01SARS_0491
symbol: EJP72007.1
gene_biotype: protein_coding
description:
  Putative 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase; Identified by match to protein family HMM PF01494.


ensembl_gene_id: NT01SARS_0496
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: NT01SARS_0497
symbol: EJP72012.1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpA; Identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; Belongs to the ClpA/ClpB family.


ensembl_gene_id: NT01SARS_0498
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: NT01SARS_0499
symbol: icd
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase, NADP-dependent; Identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183.


ensembl_gene_id: NT01SARS_0500
symbol: trmU
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: NT01SARS_0501
symbol: EJP72016.1
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM PF08328; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: NT01SARS_0505
symbol: EJP72020.1
gene_biotype: protein_coding
description:
  Putative thiamine biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: NT01SARS_0506
symbol: nqrF
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, F subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.


ensembl_gene_id: NT01SARS_0507
symbol: nqrE
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, E subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family.


ensembl_gene_id: NT01SARS_0508
symbol: nqrD
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, D subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family.


ensembl_gene_id: NT01SARS_0509
symbol: nqrC
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.


ensembl_gene_id: NT01SARS_0510
symbol: nqrB
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, B subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.


ensembl_gene_id: NT01SARS_0511
symbol: nqrA
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.


ensembl_gene_id: NT01SARS_0512
symbol: EJP72027.1
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase A, ic; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: NT01SARS_0514
symbol: EJP72029.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.


ensembl_gene_id: NT01SARS_0515
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: NT01SARS_0516
symbol: yhgI
gene_biotype: protein_coding
description:
  IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.


ensembl_gene_id: NT01SARS_0520
symbol: EJP72034.1
gene_biotype: protein_coding
description:
  tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA).


ensembl_gene_id: NT01SARS_0521
symbol: EJP72036.1
gene_biotype: protein_coding
description:
  Na(+)-linked D-alanine glycine permease; Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.


ensembl_gene_id: NT01SARS_0525
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: NT01SARS_0526
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: NT01SARS_0528
symbol: EJP72043.1
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.


ensembl_gene_id: NT01SARS_0530
symbol: rpmF
gene_biotype: protein_coding
description:
  Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: NT01SARS_0531
symbol: rluC
gene_biotype: protein_coding
description:
  rRNA pseudouridylate synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: NT01SARS_0532
symbol: EJP72048.1
gene_biotype: protein_coding
description:
  NAD(+) diphosphatase; Identified by match to protein family HMM PF00293; match to protein family HMM PF09296.


ensembl_gene_id: NT01SARS_0534
symbol: nhaB
gene_biotype: protein_coding
description:
  Na(+)/H(+) antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family.


ensembl_gene_id: NT01SARS_0536
symbol: dusA
gene_biotype: protein_coding
description:
  tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.


ensembl_gene_id: NT01SARS_0537
symbol: EJP72052.1
gene_biotype: protein_coding
description:
  Mrp-like protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: NT01SARS_0538
symbol: metG
gene_biotype: protein_coding
description:
  methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: NT01SARS_0539
symbol: EJP72054.1
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.


ensembl_gene_id: NT01SARS_0540
symbol: grxD
gene_biotype: protein_coding
description:
  Monothiol glutaredoxin, Grx4 family; Identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: NT01SARS_0541
symbol: rnt
gene_biotype: protein_coding
description:
  Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.


ensembl_gene_id: NT01SARS_0542
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: NT01SARS_0543
symbol: cofE
gene_biotype: protein_coding
description:
  F420_cofE,gamma-glutamyl ligase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.


ensembl_gene_id: NT01SARS_0544
symbol: EJP72059.1
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Identified by match to protein family HMM PF03966; Belongs to the UPF0434 family.


ensembl_gene_id: NT01SARS_0551
symbol: EJP72064.1
gene_biotype: protein_coding
description:
  Outer membrane receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: NT01SARS_0559
symbol: EJP72071.1
gene_biotype: protein_coding
description:
  NADPH-dependent 7-cyano-7-deazaguanine reductase; Identified by match to protein family HMM PF01227.


ensembl_gene_id: NT01SARS_0566
symbol: EJP72079.1
gene_biotype: protein_coding
description:
  alpha-methylacyl-CoA racemase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.


ensembl_gene_id: NT01SARS_0575
symbol: EJP72087.1
gene_biotype: protein_coding
description:
  Macrolide export ATP-binding/permease protein MacB; Identified by match to protein family HMM PF02687.


ensembl_gene_id: NT01SARS_0576
symbol: EJP72088.1
gene_biotype: protein_coding
description:
  Putative macrolide-specific efflux protein MacA; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: NT01SARS_0577
symbol: EJP72089.1
gene_biotype: protein_coding
description:
  Macrolide export ATP-binding/permease protein MacB; Identified by match to protein family HMM PF00005.


ensembl_gene_id: NT01SARS_0579
symbol: EJP72091.1
gene_biotype: protein_coding
description:
  Periplasmic protein TonB2; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: NT01SARS_0584
symbol: EJP72096.1
gene_biotype: protein_coding
description:
  Outer membrane receptor protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: NT01SARS_0586
symbol: EJP72098.1
gene_biotype: protein_coding
description:
  glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: NT01SARS_0588
symbol: EJP72101.1
gene_biotype: protein_coding
description:
  PhzF family phenazine biosynthesis protein; Identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654.


ensembl_gene_id: NT01SARS_0595
symbol: EJP72107.1
gene_biotype: protein_coding
description:
  Alkaline phosphatase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF09423.


ensembl_gene_id: NT01SARS_0602
symbol: EJP72113.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: NT01SARS_0603
symbol: EJP72114.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF07715.


ensembl_gene_id: NT01SARS_0605
symbol: EJP72116.1
gene_biotype: protein_coding
description:
  Methyltransferase type 11; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: NT01SARS_0608
symbol: EJP72118.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: NT01SARS_0609
symbol: EJP72120.1
gene_biotype: protein_coding
description:
  Sodium-dependent dicarboxylate transporter SdcS; Identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785.


ensembl_gene_id: NT01SARS_0611
symbol: gltX
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: NT01SARS_0612
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: NT01SARS_0614
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: NT01SARS_0615
symbol: oppC
gene_biotype: protein_coding
description:
  Oligopeptide ABC transporter, permease protein OppC; Identified by match to protein family HMM PF00528.


ensembl_gene_id: NT01SARS_0616
symbol: EJP72126.1
gene_biotype: protein_coding
description:
  Putative membrane-bound lytic murein transglycosylase D; Identified by match to protein family HMM PF01464; match to protein family HMM PF01476.


ensembl_gene_id: NT01SARS_0617
symbol: EJP72128.1
gene_biotype: protein_coding
description:
  Oligopeptide transport system permease protein OppB; Identified by match to protein family HMM PF00528.


ensembl_gene_id: NT01SARS_0620
symbol: EJP72131.1
gene_biotype: protein_coding
description:
  DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: NT01SARS_0621
symbol: lon
gene_biotype: protein_coding
description:
  Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: NT01SARS_0622
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: NT01SARS_0623
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: NT01SARS_0624
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: NT01SARS_0627
symbol: gdhA
gene_biotype: protein_coding
description:
  Glutamate dehydrogenase; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: NT01SARS_0632
symbol: folD
gene_biotype: protein_coding
description:
  Bifunctional protein FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: NT01SARS_0633
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: NT01SARS_0639
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: NT01SARS_0642
symbol: wrbA
gene_biotype: protein_coding
description:
  NAD(P)H:quinone oxidoreductase, type IV; Identified by match to protein family HMM PF00258; match to protein family HMM TIGR01755; Belongs to the WrbA family.


ensembl_gene_id: NT01SARS_0645
symbol: sppA
gene_biotype: protein_coding
description:
  Signal peptide peptidase SppA, 67K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706.


ensembl_gene_id: NT01SARS_0646
symbol: EJP72153.1
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: NT01SARS_0648
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878.


ensembl_gene_id: NT01SARS_0649
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: NT01SARS_0652
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: NT01SARS_0653
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: NT01SARS_0657
symbol: EJP72164.1
gene_biotype: protein_coding
description:
  Small heat shock protein IbpA; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: NT01SARS_0661
symbol: EJP72168.1
gene_biotype: protein_coding
description:
  Citrate transporter; Identified by match to protein family HMM PF02080; match to protein family HMM PF03600.


ensembl_gene_id: NT01SARS_0664
symbol: EJP72171.1
gene_biotype: protein_coding
description:
  Pseudoazurin; Identified by match to protein family HMM PF00127; match to protein family HMM TIGR02375.


ensembl_gene_id: NT01SARS_0668
symbol: EJP72174.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase family member 10; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.


ensembl_gene_id: NT01SARS_0669
symbol: EJP72175.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: NT01SARS_0670
symbol: EJP72176.1
gene_biotype: protein_coding
description:
  Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.


ensembl_gene_id: NT01SARS_0672
symbol: EJP72177.1
gene_biotype: protein_coding
description:
  K+-dependent Na+/Ca+ exchanger family protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367.


ensembl_gene_id: NT01SARS_0675
symbol: EJP72181.1
gene_biotype: protein_coding
description:
  Unspecific monooxygenase; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.


ensembl_gene_id: NT01SARS_0679
symbol: EJP72184.1
gene_biotype: protein_coding
description:
  Putative NADH dehydrogenase subunit 5; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: NT01SARS_0683
symbol: EJP72188.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.


ensembl_gene_id: NT01SARS_0686
symbol: EJP72191.1
gene_biotype: protein_coding
description:
  Zn-dependent peptidase; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; match to protein family HMM PF08367.


ensembl_gene_id: NT01SARS_0689
symbol: EJP72194.1
gene_biotype: protein_coding
description:
  Putative cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.


ensembl_gene_id: NT01SARS_0690
symbol: smc
gene_biotype: protein_coding
description:
  Chain F, Smc Head Domain protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: NT01SARS_0693
symbol: EJP72198.1
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein DsbE; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385.


ensembl_gene_id: NT01SARS_0695
symbol: ccmE
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: NT01SARS_0697
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: NT01SARS_0699
symbol: EJP72204.1
gene_biotype: protein_coding
description:
  Cytochrome c biogenesis ATP-binding export protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.


ensembl_gene_id: NT01SARS_0701
symbol: EJP72206.1
gene_biotype: protein_coding
description:
  O-acetylhomoserine aminocarboxypropyltransferase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.


ensembl_gene_id: NT01SARS_0705
symbol: EJP72210.1
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00593.


ensembl_gene_id: NT01SARS_0706
symbol: EJP72212.1
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_0707
symbol: EJP72211.1
gene_biotype: protein_coding
description:
  Aconitate hydratase 2; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00330.


ensembl_gene_id: NT01SARS_0708
symbol: EJP72213.1
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: NT01SARS_0710
symbol: EJP72215.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: NT01SARS_0711
symbol: thrS
gene_biotype: protein_coding
description:
  threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: NT01SARS_0718
symbol: cysS
gene_biotype: protein_coding
description:
  cysteine--tRNA ligase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09334; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: NT01SARS_0719
symbol: EJP72223.1
gene_biotype: protein_coding
description:
  Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: NT01SARS_0720
symbol: folE
gene_biotype: protein_coding
description:
  GTP cyclohydrolase I; Identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063.


ensembl_gene_id: NT01SARS_0722
symbol: EJP72226.1
gene_biotype: protein_coding
description:
  Short chain dehydrogenase/reductase family oxidoreductase; Identified by match to protein family HMM PF00106.


ensembl_gene_id: NT01SARS_0723
symbol: EJP72228.1
gene_biotype: protein_coding
description:
  methylated-DNA--[protein]-cysteine S-methyltransferase; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589.


ensembl_gene_id: NT01SARS_0725
symbol: rocD
gene_biotype: protein_coding
description:
  Ornithine aminotransferase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: NT01SARS_0729
symbol: EJP72233.1
gene_biotype: protein_coding
description:
  Methylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: NT01SARS_0732
symbol: EJP72235.1
gene_biotype: protein_coding
description:
  Aspartate kinase, monofunctional class; Identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657; Belongs to the aspartokinase family.


ensembl_gene_id: NT01SARS_0733
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: NT01SARS_0737
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: NT01SARS_0738
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: NT01SARS_0741
symbol: arsC
gene_biotype: protein_coding
description:
  Arsenate reductase; Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: NT01SARS_0743
symbol: EJP72245.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase Cyp18; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: NT01SARS_0744
symbol: lpxH
gene_biotype: protein_coding
description:
  UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: NT01SARS_0745
symbol: EJP72247.1
gene_biotype: protein_coding
description:
  Protein SamA; Identified by match to protein family HMM PF00717; Belongs to the peptidase S24 family.


ensembl_gene_id: NT01SARS_0746
symbol: EJP72248.1
gene_biotype: protein_coding
description:
  Protein ImpB; Identified by match to protein family HMM PF00817; Belongs to the DNA polymerase type-Y family.


ensembl_gene_id: NT01SARS_0750
symbol: EJP72252.1
gene_biotype: protein_coding
description:
  Ferritin and Dps; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_0751
symbol: EJP72253.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.


ensembl_gene_id: NT01SARS_0754
symbol: EJP72256.1
gene_biotype: protein_coding
description:
  Protein SamA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00717; Belongs to the peptidase S24 family.


ensembl_gene_id: NT01SARS_0760
symbol: EJP72262.1
gene_biotype: protein_coding
description:
  Putative thiol-disulfide oxidoreductase DCC; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_0763
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: NT01SARS_0764
symbol: acnB
gene_biotype: protein_coding
description:
  Aconitate hydratase 2; Identified by match to protein family HMM PF00330; match to protein family HMM PF06434; match to protein family HMM TIGR00117; Belongs to the aconitase/IPM isomerase family.


ensembl_gene_id: NT01SARS_0767
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: NT01SARS_0768
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: NT01SARS_0769
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: NT01SARS_0770
symbol: trpF
gene_biotype: protein_coding
description:
  N-(5'phosphoribosyl)anthranilate isomerase; Identified by match to protein family HMM PF00697; Belongs to the TrpF family.


ensembl_gene_id: NT01SARS_0771
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: NT01SARS_0772
symbol: fimV
gene_biotype: protein_coding
description:
  Protein FimV, C-terminal domain protein; Identified by match to protein family HMM TIGR03504; match to protein family HMM TIGR03505.


ensembl_gene_id: NT01SARS_0773
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: NT01SARS_0774
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: NT01SARS_0775
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: NT01SARS_0776
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: NT01SARS_0777
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: NT01SARS_0778
symbol: prpD
gene_biotype: protein_coding
description:
  2-methylcitrate dehydratase; Identified by match to protein family HMM PF03972; match to protein family HMM TIGR02330.


ensembl_gene_id: NT01SARS_0779
symbol: EJP72281.1
gene_biotype: protein_coding
description:
  2-methylcitrate synthase; Identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800; Belongs to the citrate synthase family.


ensembl_gene_id: NT01SARS_0780
symbol: prpB
gene_biotype: protein_coding
description:
  Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.


ensembl_gene_id: NT01SARS_0781
symbol: queH
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).


ensembl_gene_id: NT01SARS_0782
symbol: thrH
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR02137.


ensembl_gene_id: NT01SARS_0785
symbol: lexA
gene_biotype: protein_coding
description:
  Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: NT01SARS_0787
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: NT01SARS_0792
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: NT01SARS_0795
symbol: nadK
gene_biotype: protein_coding
description:
  Putative inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: NT01SARS_0797
symbol: EJP72299.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.


ensembl_gene_id: NT01SARS_0798
symbol: EJP72300.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: NT01SARS_0799
symbol: EJP72302.1
gene_biotype: protein_coding
description:
  Regulator of ribonuclease activity A protein 1; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.


ensembl_gene_id: NT01SARS_0802
symbol: EJP72304.1
gene_biotype: protein_coding
description:
  Periplasmic beta-glucosidase/beta-xylosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.


ensembl_gene_id: NT01SARS_0803
symbol: msrA-2
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase MsrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: NT01SARS_0804
symbol: EJP72306.1
gene_biotype: protein_coding
description:
  Putative toxin-antitoxin system, toxin component; Identified by match to protein family HMM PF02798; Belongs to the GST superfamily.


ensembl_gene_id: NT01SARS_0806
symbol: EJP72308.1
gene_biotype: protein_coding
description:
  methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.


ensembl_gene_id: NT01SARS_0812
symbol: EJP72314.1
gene_biotype: protein_coding
description:
  Peptidase, S41 family; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.


ensembl_gene_id: NT01SARS_0813
symbol: xth
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.


ensembl_gene_id: NT01SARS_0815
symbol: tadA
gene_biotype: protein_coding
description:
  tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: NT01SARS_0816
symbol: EJP72318.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; Identified by match to protein family HMM PF08547.


ensembl_gene_id: NT01SARS_0817
symbol: EJP72319.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01571; match to protein family HMM PF08669; Belongs to the GcvT family.


ensembl_gene_id: NT01SARS_0825
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: NT01SARS_0826
symbol: EJP72327.1
gene_biotype: protein_coding
description:
  Putative short chain dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NT01SARS_0829
symbol: EJP72331.1
gene_biotype: protein_coding
description:
  Putative NADPH-quinone reductase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: NT01SARS_0833
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: NT01SARS_0837
symbol: EJP72338.1
gene_biotype: protein_coding
description:
  Inner membrane protein YieG; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916.


ensembl_gene_id: NT01SARS_0838
symbol: EJP72340.1
gene_biotype: protein_coding
description:
  Putative 4a-hydroxytetrahydrobiopterin dehydratase; Identified by match to protein family HMM PF01329.


ensembl_gene_id: NT01SARS_0839
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase class II 1; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: NT01SARS_0842
symbol: fhs
gene_biotype: protein_coding
description:
  Formate--tetrahydrofolate ligase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family.


ensembl_gene_id: NT01SARS_0844
symbol: EJP72345.1
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photo-lyase; Identified by match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.


ensembl_gene_id: NT01SARS_0846
symbol: EJP72347.1
gene_biotype: protein_coding
description:
  L-sorbosone dehydrogenase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_0847
symbol: EJP72348.1
gene_biotype: protein_coding
description:
  Inositol monophosphatase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00459.


ensembl_gene_id: NT01SARS_0852
symbol: pgi
gene_biotype: protein_coding
description:
  Glucose-6-phosphate isomerase; Identified by match to protein family HMM PF00342; Belongs to the GPI family.


ensembl_gene_id: NT01SARS_0853
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP).


ensembl_gene_id: NT01SARS_0854
symbol: EJP71055.1
gene_biotype: protein_coding
description:
  Integration host factor subunit beta; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: NT01SARS_0856
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017.


ensembl_gene_id: NT01SARS_0857
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: NT01SARS_0858
symbol: EJP71059.1
gene_biotype: protein_coding
description:
  Prephenate dehydrogenase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02153.


ensembl_gene_id: NT01SARS_0859
symbol: EJP71060.1
gene_biotype: protein_coding
description:
  P-protein; Identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.


ensembl_gene_id: NT01SARS_0860
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: NT01SARS_0861
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: NT01SARS_0862
symbol: EJP71063.1
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: NT01SARS_0864
symbol: pntA
gene_biotype: protein_coding
description:
  NAD(P)(+) transhydrogenase (B-specific); Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.


ensembl_gene_id: NT01SARS_0865
symbol: ubiG
gene_biotype: protein_coding
description:
  3-demethylubiquinone-9 3-O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: NT01SARS_0866
symbol: EJP71066.1
gene_biotype: protein_coding
description:
  Phosphoglycolate phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.


ensembl_gene_id: NT01SARS_0869
symbol: EJP71069.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase B, ribosomal large subunit; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: NT01SARS_0870
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: NT01SARS_0871
symbol: EJP71071.1
gene_biotype: protein_coding
description:
  ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: NT01SARS_0872
symbol: EJP71072.1
gene_biotype: protein_coding
description:
  3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: NT01SARS_0876
symbol: EJP71076.1
gene_biotype: protein_coding
description:
  Acriflavin resistance protein; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NT01SARS_0877
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: NT01SARS_0878
symbol: EJP71078.1
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate ligase, ic; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: NT01SARS_0879
symbol: pgpA
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).


ensembl_gene_id: NT01SARS_0880
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: NT01SARS_0882
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: NT01SARS_0883
symbol: EJP71083.1
gene_biotype: protein_coding
description:
  3-ketoacyl-CoA thiolase A, peroxisomal; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: NT01SARS_0885
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: NT01SARS_0886
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: NT01SARS_0887
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: NT01SARS_0888
symbol: ribD
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: NT01SARS_0889
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: NT01SARS_0890
symbol: EJP71090.1
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: NT01SARS_0892
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: NT01SARS_0895
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: NT01SARS_0897
symbol: EJP71097.1
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: NT01SARS_0901
symbol: EJP71101.1
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: NT01SARS_0903
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain-amino-acid transaminase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: NT01SARS_0904
symbol: EJP71104.1
gene_biotype: protein_coding
description:
  Phosphomannomutase/phosphoglucomutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.


ensembl_gene_id: NT01SARS_0905
symbol: EJP71106.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.


ensembl_gene_id: NT01SARS_0907
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: NT01SARS_0908
symbol: EJP71109.1
gene_biotype: protein_coding
description:
  Glutamate synthase [NADPH], large subunit; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.


ensembl_gene_id: NT01SARS_0909
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: NT01SARS_0910
symbol: EJP71110.1
gene_biotype: protein_coding
description:
  Glutamate synthase, small subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318.


ensembl_gene_id: NT01SARS_0912
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: NT01SARS_0913
symbol: EJP71113.1
gene_biotype: protein_coding
description:
  3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase; Identified by match to protein family HMM PF00106.


ensembl_gene_id: NT01SARS_0922
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: NT01SARS_0926
symbol: EJP71125.1
gene_biotype: protein_coding
description:
  Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: NT01SARS_0929
symbol: EJP71127.1
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: NT01SARS_0931
symbol: EJP71129.1
gene_biotype: protein_coding
description:
  Aminomethyltransferase, glycine cleavage system T protein; Identified by match to protein family HMM PF01571; match to protein family HMM PF08669; Belongs to the GcvT family.


ensembl_gene_id: NT01SARS_0936
symbol: EJP71131.1
gene_biotype: protein_coding
description:
  Aminomethyltransferase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01571; Belongs to the GcvT family.


ensembl_gene_id: NT01SARS_0941
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: NT01SARS_0942
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family.


ensembl_gene_id: NT01SARS_0943
symbol: EJP71137.1
gene_biotype: protein_coding
description:
  Putative crossover junction endodeoxyribonuclease; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: NT01SARS_0945
symbol: gshB
gene_biotype: protein_coding
description:
  Glutathione synthase; Identified by match to protein family HMM PF02655; match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: NT01SARS_0946
symbol: EJP71140.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: NT01SARS_0948
symbol: EJP71142.1
gene_biotype: protein_coding
description:
  DNA-binding protein Fis; Identified by match to protein family HMM PF02954; Belongs to the transcriptional regulatory Fis family.


ensembl_gene_id: NT01SARS_0949
symbol: purH
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355.


ensembl_gene_id: NT01SARS_0950
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family.


ensembl_gene_id: NT01SARS_0951
symbol: coq7
gene_biotype: protein_coding
description:
  2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.


ensembl_gene_id: NT01SARS_0952
symbol: EJP71146.1
gene_biotype: protein_coding
description:
  Inner membrane metabolite transport protein YhjE; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.


ensembl_gene_id: NT01SARS_0953
symbol: EJP71147.1
gene_biotype: protein_coding
description:
  Thiol-disulfide isomerase and thioredoxin; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.


ensembl_gene_id: NT01SARS_0954
symbol: EJP71148.1
gene_biotype: protein_coding
description:
  DNA repair helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.


ensembl_gene_id: NT01SARS_0955
symbol: trpC
gene_biotype: protein_coding
description:
  Indole-3-glycerol phosphate synthase; Identified by match to protein family HMM PF00218; Belongs to the TrpC family.


ensembl_gene_id: NT01SARS_0956
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: NT01SARS_0957
symbol: EJP71151.1
gene_biotype: protein_coding
description:
  Anthranilate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566.


ensembl_gene_id: NT01SARS_0958
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: NT01SARS_0960
symbol: rpe
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: NT01SARS_0964
symbol: EJP71158.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.


ensembl_gene_id: NT01SARS_0966
symbol: lptD
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.


ensembl_gene_id: NT01SARS_0967
symbol: surA
gene_biotype: protein_coding
description:
  Chaperone SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.


ensembl_gene_id: NT01SARS_0968
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family.


ensembl_gene_id: NT01SARS_0969
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: NT01SARS_0970
symbol: apaH
gene_biotype: protein_coding
description:
  Bis(5'-nucleosyl)-tetraphosphatase; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00668.


ensembl_gene_id: NT01SARS_0971
symbol: EJP71165.1
gene_biotype: protein_coding
description:
  tRNA adenylyltransferase; Identified by match to protein family HMM PF01743; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: NT01SARS_0975
symbol: folK
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498.


ensembl_gene_id: NT01SARS_0976
symbol: folB
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: NT01SARS_0977
symbol: tsaD
gene_biotype: protein_coding
description:
  Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: NT01SARS_0978
symbol: rpsU
gene_biotype: protein_coding
description:
  Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: NT01SARS_0980
symbol: rph
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: NT01SARS_0981
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: NT01SARS_0982
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.


ensembl_gene_id: NT01SARS_0983
symbol: ribE
gene_biotype: protein_coding
description:
  Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.


ensembl_gene_id: NT01SARS_0984
symbol: EJP71178.1
gene_biotype: protein_coding
description:
  Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.


ensembl_gene_id: NT01SARS_0985
symbol: relA
gene_biotype: protein_coding
description:
  GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: NT01SARS_0986
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: NT01SARS_0990
symbol: hppA
gene_biotype: protein_coding
description:
  V-type H(+)-translocating pyrophosphatase; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.


ensembl_gene_id: NT01SARS_0991
symbol: EJP71185.1
gene_biotype: protein_coding
description:
  Excitatory amino acid transporter; Identified by match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: NT01SARS_0993
symbol: EJP71187.1
gene_biotype: protein_coding
description:
  Putative chorismate-pyruvate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.


ensembl_gene_id: NT01SARS_0994
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: NT01SARS_1001
symbol: EJP71195.1
gene_biotype: protein_coding
description:
  Putative YicC protein; Identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255.


ensembl_gene_id: NT01SARS_1004
symbol: EJP71198.1
gene_biotype: protein_coding
description:
  Glutamate-aspartate symport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: NT01SARS_1005
symbol: EJP71199.1
gene_biotype: protein_coding
description:
  Proton/sodium-glutamate symport protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: NT01SARS_1012
symbol: EJP71206.1
gene_biotype: protein_coding
description:
  Glutamine ligase 2; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; Belongs to the glutamine synthetase family.


ensembl_gene_id: NT01SARS_1013
symbol: EJP71207.1
gene_biotype: protein_coding
description:
  Nitrogen regulation protein NtrB; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: NT01SARS_1015
symbol: ntrC
gene_biotype: protein_coding
description:
  Nitrogen regulation protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: NT01SARS_1016
symbol: gpmA
gene_biotype: protein_coding
description:
  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: NT01SARS_1017
symbol: EJP71211.1
gene_biotype: protein_coding
description:
  A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00633; match to protein family HMM PF00730.


ensembl_gene_id: NT01SARS_1018
symbol: EJP71212.1
gene_biotype: protein_coding
description:
  Putative Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.


ensembl_gene_id: NT01SARS_1019
symbol: EJP71213.1
gene_biotype: protein_coding
description:
  Sarcosine dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; Belongs to the GcvT family.


ensembl_gene_id: NT01SARS_1025
symbol: pip
gene_biotype: protein_coding
description:
  Prolyl aminopeptidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_1027
symbol: pip-2
gene_biotype: protein_coding
description:
  Prolyl aminopeptidase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249; Belongs to the peptidase S33 family.


ensembl_gene_id: NT01SARS_1035
symbol: EJP71227.1
gene_biotype: protein_coding
description:
  Hemimethylated DNA binding protein; Identified by match to protein family HMM PF08755; match to protein family HMM TIGR02097.


ensembl_gene_id: NT01SARS_1038
symbol: EJP71231.1
gene_biotype: protein_coding
description:
  RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family.


ensembl_gene_id: NT01SARS_1040
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: NT01SARS_1041
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: NT01SARS_1042
symbol: EJP71236.1
gene_biotype: protein_coding
description:
  Putative tetratricopeptide TPR_2; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.


ensembl_gene_id: NT01SARS_1043
symbol: folA
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: NT01SARS_1051
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-33 is required for alleviation; Belongs to the elongation factor P family.


ensembl_gene_id: NT01SARS_1052
symbol: argS
gene_biotype: protein_coding
description:
  arginine--tRNA ligase; Identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.


ensembl_gene_id: NT01SARS_1054
symbol: EJP71247.1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: NT01SARS_1055
symbol: proC
gene_biotype: protein_coding
description:
  Putative pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: NT01SARS_1057
symbol: metX
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: NT01SARS_1058
symbol: metW
gene_biotype: protein_coding
description:
  Methionine biosynthesis protein MetW; Identified by match to protein family HMM PF07021; match to protein family HMM TIGR02081.


ensembl_gene_id: NT01SARS_1059
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: NT01SARS_1060
symbol: rdgB
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: NT01SARS_1061
symbol: rpoH
gene_biotype: protein_coding
description:
  Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: NT01SARS_1062
symbol: cysQ
gene_biotype: protein_coding
description:
  3'(2'),5'-bisphosphate nucleotidase CysQ; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.


ensembl_gene_id: NT01SARS_1063
symbol: EJP71256.1
gene_biotype: protein_coding
description:
  Alkaline phosphatase 3; Identified by match to protein family HMM PF00245; Belongs to the alkaline phosphatase family.


ensembl_gene_id: NT01SARS_1067
symbol: EJP71259.1
gene_biotype: protein_coding
description:
  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: NT01SARS_1069
symbol: EJP71262.1
gene_biotype: protein_coding
description:
  Trap dicarboxylate transporter, dctm subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.


ensembl_gene_id: NT01SARS_1070
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: NT01SARS_1072
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: NT01SARS_1073
symbol: EJP71266.1
gene_biotype: protein_coding
description:
  Trap-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: NT01SARS_1076
symbol: EJP71268.1
gene_biotype: protein_coding
description:
  HTH-type transcriptional regulator HexR; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.


ensembl_gene_id: NT01SARS_1085
symbol: EJP71278.1
gene_biotype: protein_coding
description:
  Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: NT01SARS_1093
symbol: EJP71286.1
gene_biotype: protein_coding
description:
  Putative membrane protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF09529; match to protein family HMM TIGR02206.


ensembl_gene_id: NT01SARS_1094
symbol: EJP71287.1
gene_biotype: protein_coding
description:
  Saccharopine dehydrogenase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF09529; match to protein family HMM TIGR02206.


ensembl_gene_id: NT01SARS_1096
symbol: EJP71289.1
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase family 7 member A1; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: NT01SARS_1105
symbol: EJP71298.1
gene_biotype: protein_coding
description:
  Carbohydrate binding protein, putative, cbp32B; Identified by match to protein family HMM TIGR03806.


ensembl_gene_id: NT01SARS_1114
symbol: EJP71307.1
gene_biotype: protein_coding
description:
  Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828.


ensembl_gene_id: NT01SARS_1119
symbol: EJP71312.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_1121
symbol: EJP71314.1
gene_biotype: protein_coding
description:
  DoxX family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF07681.


ensembl_gene_id: NT01SARS_1122
symbol: EJP71315.1
gene_biotype: protein_coding
description:
  15-hydroxyprostaglandin dehydrogenase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NT01SARS_1128
symbol: EJP71321.1
gene_biotype: protein_coding
description:
  Zn-dependent protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_1129
symbol: EJP71322.1
gene_biotype: protein_coding
description:
  Glyoxalase family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_1133
symbol: EJP71326.1
gene_biotype: protein_coding
description:
  Putative alpha/beta hydrolase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: NT01SARS_1138
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: NT01SARS_1139
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: NT01SARS_1140
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: NT01SARS_1141
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: NT01SARS_1142
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: NT01SARS_1143
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: NT01SARS_1144
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: NT01SARS_1145
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: NT01SARS_1146
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: NT01SARS_1147
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: NT01SARS_1151
symbol: gidB
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: NT01SARS_1152
symbol: gidA
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: NT01SARS_1153
symbol: trmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: NT01SARS_1154
symbol: yidC
gene_biotype: protein_coding
description:
  Inner membrane protein OxaA; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: NT01SARS_1155
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: NT01SARS_1156
symbol: rpmH
gene_biotype: protein_coding
description:
  Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: NT01SARS_1157
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: NT01SARS_1158
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: NT01SARS_1159
symbol: recF
gene_biotype: protein_coding
description:
  Putative DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.


ensembl_gene_id: NT01SARS_1161
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: NT01SARS_1162
symbol: glyS
gene_biotype: protein_coding
description:
  glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: NT01SARS_1163
symbol: EJP71356.1
gene_biotype: protein_coding
description:
  Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase family protein; Identified by match to protein family HMM PF03279.


ensembl_gene_id: NT01SARS_1164
symbol: EJP71357.1
gene_biotype: protein_coding
description:
  Trk system potassium uptake protein TrkG; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.


ensembl_gene_id: NT01SARS_1165
symbol: trkA
gene_biotype: protein_coding
description:
  Trk system potassium uptake protein TrkA; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.


ensembl_gene_id: NT01SARS_1166
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: NT01SARS_1167
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: NT01SARS_1168
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: NT01SARS_1169
symbol: EJP71362.1
gene_biotype: protein_coding
description:
  Putative ribosome maturation factor RimN; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.


ensembl_gene_id: NT01SARS_1171
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: NT01SARS_1173
symbol: EJP71366.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: NT01SARS_1174
symbol: ctaD
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: NT01SARS_1181
symbol: cyoE
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: NT01SARS_1184
symbol: EJP71377.1
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: NT01SARS_1185
symbol: gshA
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase; Identified by match to protein family HMM PF04262; match to protein family HMM TIGR01434; Belongs to the glutamate--cysteine ligase type 1 family.


ensembl_gene_id: NT01SARS_1186
symbol: pckA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.


ensembl_gene_id: NT01SARS_1188
symbol: polA
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: NT01SARS_1193
symbol: ysxC
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: NT01SARS_1198
symbol: EJP71391.1
gene_biotype: protein_coding
description:
  HAD family hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.


ensembl_gene_id: NT01SARS_1199
symbol: xerC
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: NT01SARS_1201
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652; Belongs to the diaminopimelate epimerase family.


ensembl_gene_id: NT01SARS_1202
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: NT01SARS_1204
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; Identified by match to protein family HMM PF00670; match to protein family HMM PF05221; match to protein family HMM TIGR00936.


ensembl_gene_id: NT01SARS_1205
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: NT01SARS_1206
symbol: tkt
gene_biotype: protein_coding
description:
  Transketolase; Identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; Belongs to the transketolase family.


ensembl_gene_id: NT01SARS_1207
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: NT01SARS_1209
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality.


ensembl_gene_id: NT01SARS_1210
symbol: EJP71403.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.


ensembl_gene_id: NT01SARS_1212
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: NT01SARS_1213
symbol: tatB
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatB; Identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410.


ensembl_gene_id: NT01SARS_1214
symbol: tatA
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein TatA/E-like protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: NT01SARS_1215
symbol: EJP71408.1
gene_biotype: protein_coding
description:
  Putative ubiquinone biosynthesis protein UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.


ensembl_gene_id: NT01SARS_1217
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: NT01SARS_1218
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: NT01SARS_1219
symbol: orn
gene_biotype: protein_coding
description:
  Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: NT01SARS_1221
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-I(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: NT01SARS_1223
symbol: ybeY
gene_biotype: protein_coding
description:
  Putative metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: NT01SARS_1224
symbol: EJP71417.1
gene_biotype: protein_coding
description:
  Magnesium and cobalt efflux protein CorC; Identified by match to protein family HMM PF00571; match to protein family HMM PF03471.


ensembl_gene_id: NT01SARS_1225
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: NT01SARS_1227
symbol: EJP71420.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.


ensembl_gene_id: NT01SARS_1229
symbol: EJP71422.1
gene_biotype: protein_coding
description:
  Glutathione peroxidase; Identified by match to protein family HMM PF00255; Belongs to the glutathione peroxidase family.


ensembl_gene_id: NT01SARS_1230
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: NT01SARS_1231
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: NT01SARS_1233
symbol: EJP71426.1
gene_biotype: protein_coding
description:
  5-formyltetrahydrofolate cyclo-ligase; Identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: NT01SARS_1237
symbol: EJP71429.1
gene_biotype: protein_coding
description:
  Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557; match to protein family HMM PF05195.


ensembl_gene_id: NT01SARS_1238
symbol: EJP71430.1
gene_biotype: protein_coding
description:
  Putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988.


ensembl_gene_id: NT01SARS_1240
symbol: rpmB
gene_biotype: protein_coding
description:
  Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: NT01SARS_1242
symbol: dut
gene_biotype: protein_coding
description:
  dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: NT01SARS_1243
symbol: rpmE
gene_biotype: protein_coding
description:
  Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.


ensembl_gene_id: NT01SARS_1244
symbol: EJP71437.1
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520.


ensembl_gene_id: NT01SARS_1245
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: NT01SARS_1247
symbol: nnrD
gene_biotype: protein_coding
description:
  YjeF C-terminal domain protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.


ensembl_gene_id: NT01SARS_1250
symbol: EJP71442.1
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00293.


ensembl_gene_id: NT01SARS_1252
symbol: EJP71443.1
gene_biotype: protein_coding
description:
  Zinc-dependent hydrolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00753.


ensembl_gene_id: NT01SARS_1253
symbol: acsA
gene_biotype: protein_coding
description:
  acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: NT01SARS_1255
symbol: pcnB
gene_biotype: protein_coding
description:
  poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: NT01SARS_1256
symbol: dksA
gene_biotype: protein_coding
description:
  DnaK suppressor-like protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.


ensembl_gene_id: NT01SARS_1258
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde-2,1-aminomutase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00713.


ensembl_gene_id: NT01SARS_1261
symbol: anmK
gene_biotype: protein_coding
description:
  anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: NT01SARS_1262
symbol: EJP71453.1
gene_biotype: protein_coding
description:
  Iron-sulfur cluster insertion protein ErpA; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.


ensembl_gene_id: NT01SARS_1264
symbol: putA
gene_biotype: protein_coding
description:
  Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: NT01SARS_1265
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: NT01SARS_1267
symbol: EJP71458.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, FKBP-type FkpA; Identified by match to protein family HMM PF00254.


ensembl_gene_id: NT01SARS_1271
symbol: EJP71462.1
gene_biotype: protein_coding
description:
  Prolyl endopeptidase; Identified by match to protein family HMM PF00326; match to protein family HMM PF02897.


ensembl_gene_id: NT01SARS_1274
symbol: EJP71464.1
gene_biotype: protein_coding
description:
  Nicotinamide mononucleotide transporter PnuC; Identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528.


ensembl_gene_id: NT01SARS_1275
symbol: EJP71465.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01633; match to protein family HMM PF01636; match to protein family HMM PF02958.


ensembl_gene_id: NT01SARS_1277
symbol: EJP71467.1
gene_biotype: protein_coding
description:
  Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.


ensembl_gene_id: NT01SARS_1279
symbol: EJP71469.1
gene_biotype: protein_coding
description:
  Na+/solute symporter; Identified by match to protein family HMM PF00474; match to protein family HMM TIGR03648; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: NT01SARS_1282
symbol: EJP71472.1
gene_biotype: protein_coding
description:
  formyl-CoA transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.


ensembl_gene_id: NT01SARS_1283
symbol: mutM
gene_biotype: protein_coding
description:
  DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: NT01SARS_1284
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: NT01SARS_1285
symbol: EJP71475.1
gene_biotype: protein_coding
description:
  Outer membrane protein TolC; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.


ensembl_gene_id: NT01SARS_1286
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: NT01SARS_1287
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: NT01SARS_1288
symbol: pfp
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: NT01SARS_1290
symbol: mpl
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081.


ensembl_gene_id: NT01SARS_1293
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: NT01SARS_1294
symbol: rlmH
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: NT01SARS_1295
symbol: mrdA
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.


ensembl_gene_id: NT01SARS_1296
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; Belongs to the SEDS family.


ensembl_gene_id: NT01SARS_1298
symbol: EJP71488.1
gene_biotype: protein_coding
description:
  D-alanyl-D-alanine carboxypeptidase DacC; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.


ensembl_gene_id: NT01SARS_1299
symbol: holA
gene_biotype: protein_coding
description:
  DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.


ensembl_gene_id: NT01SARS_1302
symbol: leuS
gene_biotype: protein_coding
description:
  leucine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: NT01SARS_1303
symbol: accC
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: NT01SARS_1304
symbol: accB
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: NT01SARS_1305
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: NT01SARS_1308
symbol: EJP71498.1
gene_biotype: protein_coding
description:
  Glutathione ABC transporter, ATP-binding protein GsiA; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.


ensembl_gene_id: NT01SARS_1309
symbol: ilvD
gene_biotype: protein_coding
description:
  Dihydroxy-acid dehydratase; Identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110; Belongs to the IlvD/Edd family.


ensembl_gene_id: NT01SARS_1310
symbol: hemB
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.


ensembl_gene_id: NT01SARS_1311
symbol: trxA
gene_biotype: protein_coding
description:
  Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.


ensembl_gene_id: NT01SARS_1313
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: NT01SARS_1314
symbol: hemC
gene_biotype: protein_coding
description:
  Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: NT01SARS_1315
symbol: EJP71505.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmD family; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family.


ensembl_gene_id: NT01SARS_1318
symbol: EJP71508.1
gene_biotype: protein_coding
description:
  Efflux transporter MFP subunit, RND family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: NT01SARS_1320
symbol: EJP71509.1
gene_biotype: protein_coding
description:
  Putative acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NT01SARS_1321
symbol: bamD
gene_biotype: protein_coding
description:
  Lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: NT01SARS_1322
symbol: EJP71512.1
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: NT01SARS_1323
symbol: ilvB
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.


ensembl_gene_id: NT01SARS_1325
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: NT01SARS_1328
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: NT01SARS_1329
symbol: yacG
gene_biotype: protein_coding
description:
  Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.


ensembl_gene_id: NT01SARS_1330
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: NT01SARS_1331
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: NT01SARS_1332
symbol: EJP71520.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: NT01SARS_1333
symbol: rnr
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; Belongs to the RNR ribonuclease family.


ensembl_gene_id: NT01SARS_1337
symbol: EJP71525.1
gene_biotype: protein_coding
description:
  NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: NT01SARS_1343
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: NT01SARS_1344
symbol: EJP71531.1
gene_biotype: protein_coding
description:
  biotin-(acetyl-CoA-carboxylase) ligase; Identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121.


ensembl_gene_id: NT01SARS_1347
symbol: EJP71532.1
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM TIGR00231.


