# geneInfo

ensembl_gene_id: PMI41_00004
symbol: EJN06714.1
gene_biotype: protein_coding
description:
  Sugar phosphate isomerase/epimerase; PFAM: AP endonuclease family 2 C terminus, Xylose isomerase-like TIM barrel.


ensembl_gene_id: PMI41_00005
symbol: EJN06715.1
gene_biotype: protein_coding
description:
  Putative dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain, Oxidoreductase family, NAD-binding Rossmann fold.


ensembl_gene_id: PMI41_00008
symbol: EJN06718.1
gene_biotype: protein_coding
description:
  Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PMI41_00011
symbol: EJN06721.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, periplasmic component; PFAM: Bacterial regulatory proteins, lacI family.


ensembl_gene_id: PMI41_00014
symbol: EJN06724.1
gene_biotype: protein_coding
description:
  Periplasmic component of amino acid ABC-type transporter/signal transduction system; PFAM: Bacterial extracellular solute-binding proteins, family 3.


ensembl_gene_id: PMI41_00015
symbol: EJN06725.1
gene_biotype: protein_coding
description:
  PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.


ensembl_gene_id: PMI41_00023
symbol: EJN06733.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain, Electron transfer flavoprotein FAD-binding domain.


ensembl_gene_id: PMI41_00026
symbol: EJN06736.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase.


ensembl_gene_id: PMI41_00028
symbol: EJN06738.1
gene_biotype: protein_coding
description:
  N-methylhydantoinase A/acetone carboxylase, beta subunit; PFAM: Hydantoinase/oxoprolinase, Hydantoinase/oxoprolinase N-terminal region.


ensembl_gene_id: PMI41_00030
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase, group I; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PMI41_00031
symbol: EJN06741.1
gene_biotype: protein_coding
description:
  Putative nucleic-acid-binding protein containing a Zn-ribbon; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N), DUF35 OB-fold domain.


ensembl_gene_id: PMI41_00033
symbol: EJN06743.1
gene_biotype: protein_coding
description:
  Putative acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: PMI41_00034
symbol: EJN06744.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: PMI41_00035
symbol: EJN06745.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain.


ensembl_gene_id: PMI41_00037
symbol: EJN06747.1
gene_biotype: protein_coding
description:
  ABC-type amino acid transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.


ensembl_gene_id: PMI41_00042
symbol: EJN06752.1
gene_biotype: protein_coding
description:
  PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.


ensembl_gene_id: PMI41_00043
symbol: EJN06753.1
gene_biotype: protein_coding
description:
  TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PMI41_00044
symbol: EJN06754.1
gene_biotype: protein_coding
description:
  PFAM: MAATS-type transcriptional repressor, C-terminal region, Bacterial regulatory proteins, tetR family.


ensembl_gene_id: PMI41_00045
symbol: EJN06755.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.


ensembl_gene_id: PMI41_00046
symbol: EJN06756.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: PMI41_00052
symbol: EJN06762.1
gene_biotype: protein_coding
description:
  PFAM: TrbL/VirB6 plasmid conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbL.


ensembl_gene_id: PMI41_00055
symbol: EJN06765.1
gene_biotype: protein_coding
description:
  PFAM: CagE, TrbE, VirB family, component of type IV transporter system; TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family.


ensembl_gene_id: PMI41_00058
symbol: EJN06768.1
gene_biotype: protein_coding
description:
  P-type conjugative transfer ATPase TrbB; PFAM: Type II/IV secretion system protein; TIGRFAM: P-type conjugative transfer ATPase TrbB.


ensembl_gene_id: PMI41_00060
symbol: EJN06770.1
gene_biotype: protein_coding
description:
  Plasmid partitioning protein RepA; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: plasmid partitioning protein RepA.


ensembl_gene_id: PMI41_00061
symbol: EJN06771.1
gene_biotype: protein_coding
description:
  PFAM: ParB-like nuclease domain, RepB plasmid partitioning protein; TIGRFAM: ParB-like partition proteins, plasmid partitioning protein RepB; Belongs to the ParB family.


ensembl_gene_id: PMI41_00064
symbol: EJN06773.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerC; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: PMI41_00078
symbol: dinB
gene_biotype: protein_coding
description:
  nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: PMI41_00083
symbol: EJN06792.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI41_00086
symbol: EJN06795.1
gene_biotype: protein_coding
description:
  Transketolase, alpha subunit; PFAM: Transketolase, C-terminal domain, Transketolase, pyrimidine binding domain.


ensembl_gene_id: PMI41_00087
symbol: EJN06796.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family.


ensembl_gene_id: PMI41_00088
symbol: EJN06797.1
gene_biotype: protein_coding
description:
  TRAP-type C4-dicarboxylate transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.


ensembl_gene_id: PMI41_00110
symbol: EJN06819.1
gene_biotype: protein_coding
description:
  PFAM: Demethylmenaquinone methyltransferase; TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase.


ensembl_gene_id: PMI41_00111
symbol: EJN06820.1
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component; PFAM: NMT1/THI5 like.


ensembl_gene_id: PMI41_00114
symbol: EJN06823.1
gene_biotype: protein_coding
description:
  PFAM: Aminomethyltransferase folate-binding domain, Glycine cleavage T-protein C-terminal barrel domain; Belongs to the GcvT family.


ensembl_gene_id: PMI41_00119
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: PMI41_00123
symbol: EJN06832.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: 2,3-diaminopropionate biosynthesis protein SbnA.


ensembl_gene_id: PMI41_00124
symbol: EJN06833.1
gene_biotype: protein_coding
description:
  2,3-diaminopropionate biosynthesis protein SbnB; PFAM: Ornithine cyclodeaminase/mu-crystallin family; TIGRFAM: 2,3-diaminopropionate biosynthesis protein SbnB.


ensembl_gene_id: PMI41_00127
symbol: EJN06836.1
gene_biotype: protein_coding
description:
  Siderophore synthetase component; PFAM: Ferric iron reductase FhuF-like transporter, IucA / IucC family; overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_00129
symbol: EJN06838.1
gene_biotype: protein_coding
description:
  2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: PMI41_00130
symbol: EJN06839.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain, Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: PMI41_00135
symbol: EJN06844.1
gene_biotype: protein_coding
description:
  Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: PMI41_00144
symbol: EJN06853.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins.


ensembl_gene_id: PMI41_00153
symbol: EJN06475.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.


ensembl_gene_id: PMI41_00160
symbol: ctaA
gene_biotype: protein_coding
description:
  Hypothetical protein required for cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.


ensembl_gene_id: PMI41_00163
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: PMI41_00166
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: PMI41_00168
symbol: EJN06490.1
gene_biotype: protein_coding
description:
  Cysteine synthase A; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A, cysteine synthases.


ensembl_gene_id: PMI41_00177
symbol: EJN06499.1
gene_biotype: protein_coding
description:
  OAH/OAS sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase.


ensembl_gene_id: PMI41_00180
symbol: clpP
gene_biotype: protein_coding
description:
  Protease subunit of ATP-dependent protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: PMI41_00181
symbol: clpX
gene_biotype: protein_coding
description:
  Endopeptidase Clp ATP-binding regulatory subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: PMI41_00182
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: PMI41_00186
symbol: EJN06506.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI41_00191
symbol: EJN06511.1
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase, class II; PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II.


ensembl_gene_id: PMI41_00193
symbol: EJN06513.1
gene_biotype: protein_coding
description:
  nucleotidyltransferase/DNA polymerase involved in DNA repair; PFAM: impB/mucB/samB family C-terminal, impB/mucB/samB family.


ensembl_gene_id: PMI41_00199
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: PMI41_00201
symbol: ttcA
gene_biotype: protein_coding
description:
  Putative ATPase of the PP-loop superfamily implicated in cell cycle control; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.


ensembl_gene_id: PMI41_00202
symbol: EJN06522.1
gene_biotype: protein_coding
description:
  PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily, Multidrug resistance protein.


ensembl_gene_id: PMI41_00203
symbol: EJN06523.1
gene_biotype: protein_coding
description:
  PFAM: Glutaredoxin; TIGRFAM: monothiol glutaredoxin, Grx4 family; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: PMI41_00206
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: PMI41_00211
symbol: EJN06531.1
gene_biotype: protein_coding
description:
  Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI41_00213
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: PMI41_00216
symbol: EJN06536.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase 17.2 kD subunit; PFAM: NADH ubiquinone oxidoreductase subunit NDUFA12.


ensembl_gene_id: PMI41_00219
symbol: aat
gene_biotype: protein_coding
description:
  leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: PMI41_00220
symbol: EJN06540.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: PMI41_00221
symbol: EJN06541.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: PMI41_00222
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: PMI41_00225
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: PMI41_00227
symbol: EJN06547.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain, Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family.


ensembl_gene_id: PMI41_00228
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: PMI41_00232
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: PMI41_00235
symbol: EJN06555.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.


ensembl_gene_id: PMI41_00238
symbol: EJN06558.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD.


ensembl_gene_id: PMI41_00239
symbol: EJN06559.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase-like protein, SufS subfamily; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufSfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PMI41_00240
symbol: EJN06560.1
gene_biotype: protein_coding
description:
  FeS assembly SUF system protein; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein.


ensembl_gene_id: PMI41_00242
symbol: EJN06562.1
gene_biotype: protein_coding
description:
  FeS assembly scaffold SufA; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: FeS assembly scaffold SufA, Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.


ensembl_gene_id: PMI41_00245
symbol: EJN06565.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: PMI41_00246
symbol: nadK
gene_biotype: protein_coding
description:
  Putative sugar kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: PMI41_00252
symbol: EJN06571.1
gene_biotype: protein_coding
description:
  rRNA methylase, putative, group 3; PFAM: SpoU rRNA Methylase family, RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: PMI41_00256
symbol: EJN06195.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein; PFAM: Surface presentation of antigens (SPOA), Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.


ensembl_gene_id: PMI41_00258
symbol: EJN06197.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.


ensembl_gene_id: PMI41_00260
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: PMI41_00262
symbol: EJN06201.1
gene_biotype: protein_coding
description:
  DNA-binding protein with HTH domain containing protein; PFAM: Bacterial regulatory proteins, luxR family, Autoinducer binding domain.


ensembl_gene_id: PMI41_00264
symbol: EJN06203.1
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain, UDP-glucose/GDP-mannose dehydrogenase family, central domain, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: PMI41_00267
symbol: EJN06206.1
gene_biotype: protein_coding
description:
  ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter, Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PMI41_00268
symbol: EJN06207.1
gene_biotype: protein_coding
description:
  ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.


ensembl_gene_id: PMI41_00269
symbol: EJN06208.1
gene_biotype: protein_coding
description:
  ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_00274
symbol: EJN06213.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region.


ensembl_gene_id: PMI41_00280
symbol: EJN06219.1
gene_biotype: protein_coding
description:
  Family 3 adenylate cyclase; PFAM: 2Fe-2S iron-sulfur cluster binding domain, Adenylate and Guanylate cyclase catalytic domain.


ensembl_gene_id: PMI41_00287
symbol: EJN06224.1
gene_biotype: protein_coding
description:
  Plasmid partitioning protein RepA; PFAM: MerR family regulatory protein, CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: plasmid partitioning protein RepA.


ensembl_gene_id: PMI41_00289
symbol: EJN06226.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_00290
symbol: EJN06227.1
gene_biotype: protein_coding
description:
  Permease component of ABC-type sugar transporter; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_00291
symbol: EJN06228.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: PMI41_00294
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: PMI41_00295
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: PMI41_00296
symbol: ureE
gene_biotype: protein_coding
description:
  Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.


ensembl_gene_id: PMI41_00298
symbol: ureC
gene_biotype: protein_coding
description:
  PFAM: Urease alpha-subunit, N-terminal domain, Amidohydrolase family; TIGRFAM: urease, alpha subunit.


ensembl_gene_id: PMI41_00299
symbol: ureB
gene_biotype: protein_coding
description:
  PFAM: Urease beta subunit; TIGRFAM: urease, beta subunit; Belongs to the urease beta subunit family.


ensembl_gene_id: PMI41_00301
symbol: ureA
gene_biotype: protein_coding
description:
  PFAM: Urease, gamma subunit; TIGRFAM: urease, gamma subunit; Belongs to the urease gamma subunit family.


ensembl_gene_id: PMI41_00302
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreH; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: PMI41_00304
symbol: EJN06241.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter, Branched-chain amino acid ATP-binding cassette transporter; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD.


ensembl_gene_id: PMI41_00305
symbol: EJN06242.1
gene_biotype: protein_coding
description:
  Urea ABC transporter, permease protein UrtC; PFAM: Branched-chain amino acid transport system / permease component; TIGRFAM: urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PMI41_00306
symbol: EJN06243.1
gene_biotype: protein_coding
description:
  Urea ABC transporter, permease protein UrtB; PFAM: Branched-chain amino acid transport system / permease component; TIGRFAM: urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PMI41_00308
symbol: EJN06245.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI41_00326
symbol: EJN06263.1
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_00327
symbol: EJN06264.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Bacterial regulatory proteins, luxR family, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI41_00333
symbol: EJN06270.1
gene_biotype: protein_coding
description:
  PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PMI41_00335
symbol: EJN06272.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, periplasmic component; PFAM: ABC transporter substrate binding protein.


ensembl_gene_id: PMI41_00337
symbol: kynU
gene_biotype: protein_coding
description:
  Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: PMI41_00338
symbol: kynA
gene_biotype: protein_coding
description:
  Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.


ensembl_gene_id: PMI41_00347
symbol: EJN06284.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain, Bacterial regulatory protein, Fis family, Sigma-54 interaction domain.


ensembl_gene_id: PMI41_00348
symbol: EJN06285.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase regulating C4-dicarboxylate transport system; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI41_00349
symbol: dctA
gene_biotype: protein_coding
description:
  Na+/H+ dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: PMI41_00356
symbol: rbsA
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, ATPase component; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.


ensembl_gene_id: PMI41_00358
symbol: EJN06295.1
gene_biotype: protein_coding
description:
  Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family, DeoR-like helix-turn-helix domain.


ensembl_gene_id: PMI41_00359
symbol: EJN06296.1
gene_biotype: protein_coding
description:
  Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain, short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.


ensembl_gene_id: PMI41_00360
symbol: EJN06297.1
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype.


ensembl_gene_id: PMI41_00367
symbol: EJN06304.1
gene_biotype: protein_coding
description:
  Selenocysteine synthase (seryl-tRNASer selenium transferase); PFAM: L-seryl-tRNA selenium transferase; TIGRFAM: uncharacterized pyridoxal phosphate-dependent enzyme.


ensembl_gene_id: PMI41_00368
symbol: EJN06305.1
gene_biotype: protein_coding
description:
  ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter, Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PMI41_00369
symbol: kbl
gene_biotype: protein_coding
description:
  2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.


ensembl_gene_id: PMI41_00370
symbol: tdh
gene_biotype: protein_coding
description:
  L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.


ensembl_gene_id: PMI41_00375
symbol: metE
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: PMI41_00376
symbol: EJN06312.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, class 1b, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: PMI41_00377
symbol: EJN06313.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: PMI41_00378
symbol: nrdI
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase 2, operon protein nrdI; Probably involved in ribonucleotide reductase function.


ensembl_gene_id: PMI41_00383
symbol: EJN06318.1
gene_biotype: protein_coding
description:
  Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase.


ensembl_gene_id: PMI41_00384
symbol: EJN06319.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.


ensembl_gene_id: PMI41_00386
symbol: EJN06321.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase family; TIGRFAM: 1-pyrroline dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PMI41_00387
symbol: EJN06322.1
gene_biotype: protein_coding
description:
  ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_00388
symbol: EJN06323.1
gene_biotype: protein_coding
description:
  ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_00389
symbol: EJN06324.1
gene_biotype: protein_coding
description:
  ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter, TOBE domain.


ensembl_gene_id: PMI41_00390
symbol: EJN06325.1
gene_biotype: protein_coding
description:
  Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: PMI41_00393
symbol: EJN06328.1
gene_biotype: protein_coding
description:
  Long-chain fatty acid transport protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).


ensembl_gene_id: PMI41_00395
symbol: EJN06330.1
gene_biotype: protein_coding
description:
  FAD-linked oxidoreductase; PFAM: D-arabinono-1,4-lactone oxidase, FAD binding domain; TIGRFAM: FAD-linked oxidoreductase.


ensembl_gene_id: PMI41_00399
symbol: EJN06334.1
gene_biotype: protein_coding
description:
  PFAM: COX Aromatic Rich Motif, Cytochrome C oxidase subunit II, periplasmic domain; TIGRFAM: cytochrome o ubiquinol oxidase subunit II.


ensembl_gene_id: PMI41_00400
symbol: EJN06335.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: PMI41_00402
symbol: EJN06337.1
gene_biotype: protein_coding
description:
  PFAM: Prokaryotic Cytochrome C oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV.


ensembl_gene_id: PMI41_00407
symbol: EJN06342.1
gene_biotype: protein_coding
description:
  ABC-type polysaccharide/polyol phosphate export system, permease component; PFAM: ABC-2 type transporter.


ensembl_gene_id: PMI41_00414
symbol: EJN06349.1
gene_biotype: protein_coding
description:
  PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase.


ensembl_gene_id: PMI41_00427
symbol: EJN06362.1
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: PMI41_00428
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: PMI41_00429
symbol: EJN06364.1
gene_biotype: protein_coding
description:
  Flagellar biosynthesis pathway, component FliQ; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ.


ensembl_gene_id: PMI41_00431
symbol: flbT
gene_biotype: protein_coding
description:
  Flagellar biosynthesis regulator FlbT; Has a post-transcriptional repressor function in flagellum biogenesis. Associates with the 5'-UTR of fljK mRNA and promotes its degradation.


ensembl_gene_id: PMI41_00433
symbol: EJN06368.1
gene_biotype: protein_coding
description:
  Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: PMI41_00434
symbol: EJN06369.1
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein FlgK; PFAM: Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK.


ensembl_gene_id: PMI41_00435
symbol: EJN06370.1
gene_biotype: protein_coding
description:
  PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078), Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins.


ensembl_gene_id: PMI41_00442
symbol: EJN06377.1
gene_biotype: protein_coding
description:
  Flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: PMI41_00444
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: PMI41_00446
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: PMI41_00448
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: PMI41_00449
symbol: EJN06384.1
gene_biotype: protein_coding
description:
  Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.


ensembl_gene_id: PMI41_00450
symbol: EJN06385.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgG; PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins, flagellar basal-body rod protein FlgB, flagellar basal-body rod protein FlgG, Gram-negative bacteria.


ensembl_gene_id: PMI41_00451
symbol: fliE
gene_biotype: protein_coding
description:
  PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE.


ensembl_gene_id: PMI41_00452
symbol: EJN06387.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgC; PFAM: Flagella basal body rod protein, Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PMI41_00453
symbol: EJN06388.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: PMI41_00455
symbol: EJN06390.1
gene_biotype: protein_coding
description:
  Flagellar protein export ATPase FliI; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family, flagellar protein export ATPase FliI.


ensembl_gene_id: PMI41_00456
symbol: EJN06391.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgF; PFAM: Domain of unknown function (DUF1078), Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF, fagellar hook-basal body proteins.


ensembl_gene_id: PMI41_00465
symbol: EJN06070.1
gene_biotype: protein_coding
description:
  PFAM: Chain length determinant protein; TIGRFAM: polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family.


ensembl_gene_id: PMI41_00485
symbol: EJN06090.1
gene_biotype: protein_coding
description:
  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; PFAM: ABC transporter, Oligopeptide/dipeptide transporter, C-terminal region.


ensembl_gene_id: PMI41_00493
symbol: EJN06098.1
gene_biotype: protein_coding
description:
  Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PMI41_00496
symbol: EJN06101.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4, Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PMI41_00498
symbol: EJN06103.1
gene_biotype: protein_coding
description:
  FtsH-interacting integral membrane protein; PFAM: Uncharacterized protein family UPF0005; Belongs to the BI1 family.


ensembl_gene_id: PMI41_00506
symbol: EJN06111.1
gene_biotype: protein_coding
description:
  PFAM: Dihydroneopterin aldolase, Protein of unknown function (DUF556); TIGRFAM: dihydroneopterin aldolase, FolB domain.


ensembl_gene_id: PMI41_00515
symbol: tam
gene_biotype: protein_coding
description:
  Trans-aconitate methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.


ensembl_gene_id: PMI41_00523
symbol: EJN06005.1
gene_biotype: protein_coding
description:
  Acetolactate synthase; PFAM: Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Belongs to the TPP enzyme family.


ensembl_gene_id: PMI41_00525
symbol: EJN06007.1
gene_biotype: protein_coding
description:
  NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: PMI41_00526
symbol: EJN06008.1
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase, alpha subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the AlaDH/PNT family.


ensembl_gene_id: PMI41_00530
symbol: EJN06012.1
gene_biotype: protein_coding
description:
  Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold, Oxidoreductase family, C-terminal alpha/beta domain.


ensembl_gene_id: PMI41_00535
symbol: azoR
gene_biotype: protein_coding
description:
  Acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: PMI41_00556
symbol: EJN05964.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Orn/Lys/Arg decarboxylase, N-terminal domain.


ensembl_gene_id: PMI41_00558
symbol: EJN05966.1
gene_biotype: protein_coding
description:
  Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: PMI41_00559
symbol: EJN05967.1
gene_biotype: protein_coding
description:
  Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation); PFAM: Bacterial capsule synthesis protein PGA_cap.


ensembl_gene_id: PMI41_00567
symbol: EJN05975.1
gene_biotype: protein_coding
description:
  Hemoglobin-like flavoprotein; PFAM: Oxidoreductase FAD-binding domain, Oxidoreductase NAD-binding domain, Globin; Belongs to the globin family.


ensembl_gene_id: PMI41_00575
symbol: EJN05983.1
gene_biotype: protein_coding
description:
  Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family, Autoinducer binding domain.


ensembl_gene_id: PMI41_00579
symbol: EJN05987.1
gene_biotype: protein_coding
description:
  Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL family, Viral (Superfamily 1) RNA helicase; TIGRFAM: Ti-type conjugative transfer relaxase TraA.


ensembl_gene_id: PMI41_00587
symbol: EJN05895.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI41_00589
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: PMI41_00590
symbol: EJN05897.1
gene_biotype: protein_coding
description:
  acetyl/propionyl-CoA carboxylase, alpha subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain, Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit.


ensembl_gene_id: PMI41_00593
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit, proteobacterial; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: PMI41_00596
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.


ensembl_gene_id: PMI41_00597
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: PMI41_00600
symbol: EJN05907.1
gene_biotype: protein_coding
description:
  PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase.


ensembl_gene_id: PMI41_00601
symbol: surE
gene_biotype: protein_coding
description:
  5''/3''-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: PMI41_00602
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: PMI41_00603
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine targeting protein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: PMI41_00604
symbol: tatB
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: PMI41_00605
symbol: tatA
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: PMI41_00606
symbol: EJN05913.1
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: PMI41_00607
symbol: EJN05914.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: PMI41_00612
symbol: EJN05821.1
gene_biotype: protein_coding
description:
  Acetylornithine deacetylase ArgE; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain; TIGRFAM: acetylornithine deacetylase (ArgE).


ensembl_gene_id: PMI41_00614
symbol: EJN05823.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Sugar (and other) transporter; TIGRFAM: metabolite-proton symporter.


ensembl_gene_id: PMI41_00617
symbol: EJN05826.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI41_00618
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: PMI41_00624
symbol: EJN05833.1
gene_biotype: protein_coding
description:
  LPPG:FO 2-phospho-L-lactate transferase; PFAM: Uncharacterized protein family UPF0052; TIGRFAM: LPPG:FO 2-phospho-L-lactate transferase.


ensembl_gene_id: PMI41_00625
symbol: EJN05834.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein, CofH subfamily; PFAM: Radical SAM superfamily; TIGRFAM: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit, radical SAM domain protein, CofH subfamily, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit.


ensembl_gene_id: PMI41_00626
symbol: fbiD
gene_biotype: protein_coding
description:
  2-phospho-L-lactate guanylyltransferase; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.


ensembl_gene_id: PMI41_00629
symbol: EJN05838.1
gene_biotype: protein_coding
description:
  Flavin-dependent oxidoreductase, methylene-tetrahydromethanopterin reductase; PFAM: Luciferase-like monooxygenase.


ensembl_gene_id: PMI41_00633
symbol: EJN05842.1
gene_biotype: protein_coding
description:
  Rieske (2Fe-2S) domain-containing protein; PFAM: Ring hydroxylating alpha subunit (catalytic domain), Rieske [2Fe-2S] domain.


ensembl_gene_id: PMI41_00635
symbol: EJN05844.1
gene_biotype: protein_coding
description:
  Flavodoxin reductase family protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain, Oxidoreductase FAD-binding domain, Oxidoreductase NAD-binding domain.


ensembl_gene_id: PMI41_00639
symbol: EJN05848.1
gene_biotype: protein_coding
description:
  Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit; PFAM: Amidase; Belongs to the amidase family.


ensembl_gene_id: PMI41_00643
symbol: EJN05852.1
gene_biotype: protein_coding
description:
  Muconate/chloromuconate cycloisomerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; TIGRFAM: muconate and chloromuconate cycloisomerases.


ensembl_gene_id: PMI41_00650
symbol: EJN05859.1
gene_biotype: protein_coding
description:
  Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase, Molydopterin dinucleotide binding domain; TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: PMI41_00653
symbol: EJN05862.1
gene_biotype: protein_coding
description:
  Amidohydrolase; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain; TIGRFAM: amidohydrolase.


ensembl_gene_id: PMI41_00658
symbol: EJN05867.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with HTH domain and aminotransferase domain containing protein; PFAM: Bacterial regulatory proteins, gntR family, Aminotransferase class I and II.


ensembl_gene_id: PMI41_00666
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: PMI41_00667
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: PMI41_00668
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: PMI41_00669
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: PMI41_00670
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: PMI41_00671
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: PMI41_00672
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PMI41_00673
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PMI41_00680
symbol: EJN05781.1
gene_biotype: protein_coding
description:
  Rhs element Vgr protein; PFAM: Phage-related baseplate assembly protein; TIGRFAM: type VI secretion system Vgr family protein, Rhs element Vgr protein.


ensembl_gene_id: PMI41_00682
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12, bacterial/organelle; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: PMI41_00683
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7, bacterial/organelle; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: PMI41_00684
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]


ensembl_gene_id: PMI41_00688
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PMI41_00692
symbol: EJN05727.1
gene_biotype: protein_coding
description:
  Flp pilus assembly protein, secretin CpaC; PFAM: Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.


ensembl_gene_id: PMI41_00701
symbol: EJN05717.1
gene_biotype: protein_coding
description:
  ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region.


ensembl_gene_id: PMI41_00713
symbol: EJN05508.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: ABC transporter periplasmic binding protein, thiB subfamily, thiamine ABC transporter, periplasmic binding protein.


ensembl_gene_id: PMI41_00714
symbol: EJN05509.1
gene_biotype: protein_coding
description:
  Thiamine ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: thiamine ABC transporter, permease protein.


ensembl_gene_id: PMI41_00715
symbol: thiQ
gene_biotype: protein_coding
description:
  Thiamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.


ensembl_gene_id: PMI41_00718
symbol: EJN05513.1
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: PMI41_00722
symbol: EJN05517.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain, Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PMI41_00723
symbol: EJN05518.1
gene_biotype: protein_coding
description:
  Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain, PHB/PHA accumulation regulator DNA-binding domain; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR.


ensembl_gene_id: PMI41_00726
symbol: rpmF
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: PMI41_00727
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: PMI41_00728
symbol: EJN05523.1
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: PMI41_00729
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: PMI41_00733
symbol: EJN05528.1
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.


ensembl_gene_id: PMI41_00738
symbol: EJN05533.1
gene_biotype: protein_coding
description:
  PFAM: Branched-chain amino acid transport system / permease component, Domain of unknown function (DUF3382); Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PMI41_00742
symbol: EJN05537.1
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.


ensembl_gene_id: PMI41_00746
symbol: macB
gene_biotype: protein_coding
description:
  ABC-type antimicrobial peptide transport system, ATPase component; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.


ensembl_gene_id: PMI41_00748
symbol: rlmH
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: PMI41_00749
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: PMI41_00750
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate/nicotinamide nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: PMI41_00751
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: PMI41_00752
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: PMI41_00753
symbol: obg
gene_biotype: protein_coding
description:
  Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: PMI41_00755
symbol: rpmA
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: PMI41_00756
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: PMI41_00766
symbol: atpB
gene_biotype: protein_coding
description:
  F0F1-type ATP synthase, alpha subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: PMI41_00774
symbol: EJN05568.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI41_00793
symbol: EJN05587.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain.


ensembl_gene_id: PMI41_00798
symbol: EJN05592.1
gene_biotype: protein_coding
description:
  C-terminal processing peptidase; PFAM: Peptidase family S41, PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); Belongs to the peptidase S41A family.


ensembl_gene_id: PMI41_00800
symbol: rppH
gene_biotype: protein_coding
description:
  NTP pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: PMI41_00801
symbol: EJN05595.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.


ensembl_gene_id: PMI41_00802
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase, F1 epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: PMI41_00803
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase, F1 beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: PMI41_00804
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase, F1 gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: PMI41_00805
symbol: atpA
gene_biotype: protein_coding
description:
  Proton translocating ATP synthase, F1 alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: PMI41_00806
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase, F1 delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: PMI41_00808
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N'; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: PMI41_00809
symbol: tal
gene_biotype: protein_coding
description:
  Fructose-6-phosphate aldolase, TalC/MipB family; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: PMI41_00810
symbol: EJN05604.1
gene_biotype: protein_coding
description:
  Dioxygenase, isopenicillin N synthase; PFAM: 2OG-Fe(II) oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family.


ensembl_gene_id: PMI41_00811
symbol: ssuB
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI41_00813
symbol: ssuD
gene_biotype: protein_coding
description:
  Alkanesulfonate monooxygenase, FMNH(2)-dependent; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.


ensembl_gene_id: PMI41_00814
symbol: EJN05608.1
gene_biotype: protein_coding
description:
  PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulfonates family.


ensembl_gene_id: PMI41_00817
symbol: leuS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (I, L, M and V), Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI41_00818
symbol: EJN05612.1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: PMI41_00821
symbol: acsA
gene_biotype: protein_coding
description:
  acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: PMI41_00829
symbol: htpX
gene_biotype: protein_coding
description:
  Zn-dependent protease with chaperone function; PFAM: Peptidase family M48; Belongs to the peptidase M48B family.


ensembl_gene_id: PMI41_00830
symbol: EJN05624.1
gene_biotype: protein_coding
description:
  tRNA/rRNA cytosine-C5-methylase; PFAM: NOL1/NOP2/sun family, NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: PMI41_00836
symbol: purH
gene_biotype: protein_coding
description:
  PFAM: AICARFT/IMPCHase bienzyme, MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase.


ensembl_gene_id: PMI41_00840
symbol: EJN05634.1
gene_biotype: protein_coding
description:
  Beta-propeller domain-containing protein, methanol dehydrogenase; PFAM: Domain of unknown function (DUF477).


ensembl_gene_id: PMI41_00843
symbol: EJN05637.1
gene_biotype: protein_coding
description:
  Pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: pyridoxal kinase; Belongs to the pyridoxine kinase family.


ensembl_gene_id: PMI41_00845
symbol: EJN05639.1
gene_biotype: protein_coding
description:
  Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: PMI41_00855
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: PMI41_00856
symbol: EJN05649.1
gene_biotype: protein_coding
description:
  PFAM: Chorismate mutase type II; TIGRFAM: monofunctional chorismate mutase, alpha proteobacterial type.


ensembl_gene_id: PMI41_00857
symbol: rpsP
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: PMI41_00862
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: PMI41_00865
symbol: EJN05658.1
gene_biotype: protein_coding
description:
  Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family.


ensembl_gene_id: PMI41_00870
symbol: EJN05663.1
gene_biotype: protein_coding
description:
  O-6-methylguanine DNA methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: PMI41_00874
symbol: EJN05667.1
gene_biotype: protein_coding
description:
  PFAM: Aminomethyltransferase folate-binding domain, Glycine cleavage T-protein C-terminal barrel domain, FAD dependent oxidoreductase; TIGRFAM: sarcosine oxidase, gamma subunit family, heterotetrameric form, glycine cleavage system T protein; Belongs to the GcvT family.


ensembl_gene_id: PMI41_00876
symbol: EJN05669.1
gene_biotype: protein_coding
description:
  GTP-binding protein TypA/BipA; PFAM: Elongation factor Tu domain 2, Elongation factor G C-terminus, Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA, small GTP-binding protein domain.


ensembl_gene_id: PMI41_00878
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: PMI41_00879
symbol: EJN05672.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized ACR, YggU family COG1872; TIGRFAM: TIGR00251 family protein; Belongs to the UPF0235 family.


ensembl_gene_id: PMI41_00881
symbol: EJN05674.1
gene_biotype: protein_coding
description:
  PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: PMI41_00887
symbol: EJN05680.1
gene_biotype: protein_coding
description:
  uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: PMI41_00888
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: PMI41_00889
symbol: tsaD
gene_biotype: protein_coding
description:
  Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: PMI41_00890
symbol: gpsA
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: PMI41_00897
symbol: EJN05690.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III, exodeoxyribonuclease III (xth).


ensembl_gene_id: PMI41_00898
symbol: EJN05691.1
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: PMI41_00905
symbol: EJN05698.1
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family.


ensembl_gene_id: PMI41_00907
symbol: EJN05700.1
gene_biotype: protein_coding
description:
  PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PMI41_00912
symbol: EJN05705.1
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: PMI41_00913
symbol: EJN05706.1
gene_biotype: protein_coding
description:
  PFAM: domain, FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup, succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: PMI41_00914
symbol: EJN05707.1
gene_biotype: protein_coding
description:
  PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein.


ensembl_gene_id: PMI41_00915
symbol: EJN05708.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit.


ensembl_gene_id: PMI41_00918
symbol: EJN05711.1
gene_biotype: protein_coding
description:
  ExsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: PMI41_00919
symbol: EJN05138.1
gene_biotype: protein_coding
description:
  ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain, Helicase associated domain (HA2), ATP-dependent helicase C-terminal, DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB.


ensembl_gene_id: PMI41_00920
symbol: EJN05139.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.


ensembl_gene_id: PMI41_00929
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: PMI41_00930
symbol: EJN05149.1
gene_biotype: protein_coding
description:
  Zn-dependent dipeptidase, microsomal dipeptidase; PFAM: Membrane dipeptidase (Peptidase family M19).


ensembl_gene_id: PMI41_00938
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: PMI41_00945
symbol: EJN05163.1
gene_biotype: protein_coding
description:
  TRAP-type C4-dicarboxylate transport system, large permease component; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.


ensembl_gene_id: PMI41_00946
symbol: EJN05164.1
gene_biotype: protein_coding
description:
  Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase.


ensembl_gene_id: PMI41_00952
symbol: EJN05170.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein.


ensembl_gene_id: PMI41_00976
symbol: EJN05193.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI41_00979
symbol: EJN05196.1
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: PMI41_00985
symbol: EJN05202.1
gene_biotype: protein_coding
description:
  Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; PFAM: Phospholipase D Active site motif.


ensembl_gene_id: PMI41_00987
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: PMI41_00988
symbol: yidC
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family containing protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: PMI41_00989
symbol: engB
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC/EngB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: PMI41_00993
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: PMI41_00995
symbol: EJN05212.1
gene_biotype: protein_coding
description:
  Phenylalanine-4-hydroxylase, monomeric form; PFAM: Biopterin-dependent aromatic amino acid hydroxylase; TIGRFAM: phenylalanine-4-hydroxylase, monomeric form.


ensembl_gene_id: PMI41_00997
symbol: EJN05214.1
gene_biotype: protein_coding
description:
  Pyrimidine 5''-nucleotidase; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, pyrimidine 5'-nucleotidase.


ensembl_gene_id: PMI41_00998
symbol: EJN05215.1
gene_biotype: protein_coding
description:
  Putative Rossmann fold nucleotide-binding protein; PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00730 family protein.


ensembl_gene_id: PMI41_00999
symbol: dapD
gene_biotype: protein_coding
description:
  PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: PMI41_01000
symbol: EJN05217.1
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: PMI41_01001
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: PMI41_01003
symbol: truA
gene_biotype: protein_coding
description:
  Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: PMI41_01005
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: PMI41_01006
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: PMI41_01010
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: PMI41_01015
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: PMI41_01017
symbol: ybeY
gene_biotype: protein_coding
description:
  Metalloprotein, YbeY/UPF0054 family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: PMI41_01019
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: PMI41_01021
symbol: EJN05238.1
gene_biotype: protein_coding
description:
  PFAM: S-adenosylmethionine synthetase, C-terminal domain, S-adenosylmethionine synthetase, central domain, S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase; Belongs to the AdoMet synthase family.


ensembl_gene_id: PMI41_01022
symbol: trmB
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: PMI41_01027
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: PMI41_01028
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: PMI41_01029
symbol: EJN05246.1
gene_biotype: protein_coding
description:
  Putative nucleic-acid-binding protein implicated in transcription termination; PFAM: Protein of unknown function (DUF448).


ensembl_gene_id: PMI41_01030
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: PMI41_01031
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: PMI41_01032
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine 55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: PMI41_01036
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: PMI41_01037
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: PMI41_01038
symbol: EJN05255.1
gene_biotype: protein_coding
description:
  16S RNA methylase RsmC; PFAM: Methyltransferase small domain; Belongs to the methyltransferase superfamily.


ensembl_gene_id: PMI41_01040
symbol: EJN05257.1
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase, N-terminal domain, Beta-ketoacyl synthase, C-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: PMI41_01041
symbol: fabA
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl carrier protein) dehydratase FabA; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.


ensembl_gene_id: PMI41_01042
symbol: fur
gene_biotype: protein_coding
description:
  Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family; Belongs to the Fur family.


ensembl_gene_id: PMI41_01047
symbol: EJN05264.1
gene_biotype: protein_coding
description:
  Lactate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: PMI41_01050
symbol: EJN05267.1
gene_biotype: protein_coding
description:
  Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: MoeZ/MoeB domain, ThiF family.


ensembl_gene_id: PMI41_01061
symbol: EJN05278.1
gene_biotype: protein_coding
description:
  L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: PMI41_01062
symbol: recF
gene_biotype: protein_coding
description:
  recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: PMI41_01063
symbol: EJN05280.1
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: PMI41_01065
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: PMI41_01068
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase Fpg; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: PMI41_01069
symbol: deoB
gene_biotype: protein_coding
description:
  Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.


ensembl_gene_id: PMI41_01076
symbol: EJN05293.1
gene_biotype: protein_coding
description:
  Flp pilus assembly protein, secretin CpaC; PFAM: Putative phospholipid-binding domain, Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.


ensembl_gene_id: PMI41_01077
symbol: EJN05294.1
gene_biotype: protein_coding
description:
  PFAM: Pilus biogenesis CpaD protein (pilus_cpaD); TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD.


ensembl_gene_id: PMI41_01083
symbol: EJN05300.1
gene_biotype: protein_coding
description:
  PFAM: Cytosol aminopeptidase family, catalytic domain, Cytosol aminopeptidase family, N-terminal domain; Belongs to the peptidase M17 family.


ensembl_gene_id: PMI41_01085
symbol: EJN05302.1
gene_biotype: protein_coding
description:
  Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family, Bacterial SH3 domain.


ensembl_gene_id: PMI41_01086
symbol: EJN05303.1
gene_biotype: protein_coding
description:
  Phosphoglycerate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.


ensembl_gene_id: PMI41_01087
symbol: EJN05304.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, duplicated ATPase component; PFAM: ABC transporter, Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PMI41_01088
symbol: EJN05305.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_01090
symbol: EJN05307.1
gene_biotype: protein_coding
description:
  ABC-type oligopeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.


ensembl_gene_id: PMI41_01093
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: PMI41_01096
symbol: EJN05313.1
gene_biotype: protein_coding
description:
  Zn-finger containing NTP pyrophosphohydrolase; PFAM: NADH pyrophosphatase zinc ribbon domain, NUDIX domain, NADH pyrophosphatase-like rudimentary NUDIX domain.


ensembl_gene_id: PMI41_01099
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: PMI41_01100
symbol: EJN05316.1
gene_biotype: protein_coding
description:
  DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: PMI41_01102
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: PMI41_01103
symbol: EJN05319.1
gene_biotype: protein_coding
description:
  Lytic murein transglycosylase; PFAM: Putative peptidoglycan binding domain; TIGRFAM: lytic murein transglycosylase.


ensembl_gene_id: PMI41_01109
symbol: EJN05325.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Pyridine nucleotide-disulphide oxidoreductase, dimerization domain.


ensembl_gene_id: PMI41_01114
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: PMI41_01115
symbol: EJN05331.1
gene_biotype: protein_coding
description:
  Fucose dissimilation pathway protein FucU; PFAM: RbsD / FucU transport protein family; Belongs to the RbsD / FucU family.


ensembl_gene_id: PMI41_01117
symbol: EJN05333.1
gene_biotype: protein_coding
description:
  PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily, Multidrug resistance protein.


ensembl_gene_id: PMI41_01120
symbol: EJN05336.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase, short form; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: PMI41_01121
symbol: EJN05337.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: PMI41_01122
symbol: EJN05338.1
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: PMI41_01123
symbol: EJN05339.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: PMI41_01124
symbol: EJN05340.1
gene_biotype: protein_coding
description:
  Phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II, Phosphoglucomutase/phosphomannomutase, C-terminal domain, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.


ensembl_gene_id: PMI41_01133
symbol: EJN05348.1
gene_biotype: protein_coding
description:
  Arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase; PFAM: Arginase family; Belongs to the arginase family.


ensembl_gene_id: PMI41_01145
symbol: EJN05359.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase N terminal, Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain.


ensembl_gene_id: PMI41_01148
symbol: EJN05362.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase family, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.


ensembl_gene_id: PMI41_01152
symbol: lysS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (K); TIGRFAM: lysyl-tRNA synthetase, archaeal and spirochete; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI41_01156
symbol: EJN05370.1
gene_biotype: protein_coding
description:
  Phosphate regulon sensor kinase PhoR; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: phosphate regulon sensor kinase PhoR.


ensembl_gene_id: PMI41_01158
symbol: argD
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine transaminases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: PMI41_01159
symbol: EJN05373.1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: PMI41_01160
symbol: EJN05374.1
gene_biotype: protein_coding
description:
  Disulfide bond chaperone; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.


ensembl_gene_id: PMI41_01161
symbol: EJN05375.1
gene_biotype: protein_coding
description:
  Putative Zn-ribbon-containing protein involved in phosphonate metabolism; PFAM: PhnA protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA.


ensembl_gene_id: PMI41_01164
symbol: metZ
gene_biotype: protein_coding
description:
  O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: PMI41_01168
symbol: EJN05380.1
gene_biotype: protein_coding
description:
  Putative transmembrane sensor domain protein; PFAM: Adenylate and Guanylate cyclase catalytic domain, CHASE2 domain.


ensembl_gene_id: PMI41_01172
symbol: EJN05384.1
gene_biotype: protein_coding
description:
  Hypothetical protein with SCP/PR1 domain containing protein; PFAM: Cysteine-rich secretory protein family.


ensembl_gene_id: PMI41_01174
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase, subfamily 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: PMI41_01178
symbol: EJN05390.1
gene_biotype: protein_coding
description:
  Proline iminopeptidase; PFAM: alpha/beta hydrolase fold; TIGRFAM: proline iminopeptidase, Neisseria-type subfamily; Belongs to the peptidase S33 family.


ensembl_gene_id: PMI41_01181
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: PMI41_01183
symbol: EJN05395.1
gene_biotype: protein_coding
description:
  5-aminolevulinic acid synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase, 5-aminolevulinic acid synthase.


ensembl_gene_id: PMI41_01184
symbol: EJN05396.1
gene_biotype: protein_coding
description:
  UDP-glucose-4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: PMI41_01191
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: PMI41_01193
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: PMI41_01196
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: PMI41_01197
symbol: EJN05408.1
gene_biotype: protein_coding
description:
  MAF protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: PMI41_01198
symbol: yacG
gene_biotype: protein_coding
description:
  Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.


ensembl_gene_id: PMI41_01214
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: PMI41_01218
symbol: EJN05428.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: PMI41_01220
symbol: EJN05430.1
gene_biotype: protein_coding
description:
  Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.


ensembl_gene_id: PMI41_01222
symbol: EJN05432.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator with C-terminal CBS domain containing protein; PFAM: Helix-turn-helix.


ensembl_gene_id: PMI41_01223
symbol: EJN05433.1
gene_biotype: protein_coding
description:
  Hypothetical protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein.


ensembl_gene_id: PMI41_01224
symbol: EJN05434.1
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; TIGRFAM: sarcosine oxidase, beta subunit family, heterotetrameric form.


ensembl_gene_id: PMI41_01225
symbol: folD
gene_biotype: protein_coding
description:
  5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: PMI41_01228
symbol: edd
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.


ensembl_gene_id: PMI41_01230
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: PMI41_01238
symbol: EJN05448.1
gene_biotype: protein_coding
description:
  PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III.


ensembl_gene_id: PMI41_01242
symbol: EJN05452.1
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix, Predicted transcriptional regulator (DUF2083), Domain of unknown function (DUF955).


ensembl_gene_id: PMI41_01245
symbol: EJN05455.1
gene_biotype: protein_coding
description:
  Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.


ensembl_gene_id: PMI41_01246
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI41_01253
symbol: EJN05463.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI41_01261
symbol: EJN05470.1
gene_biotype: protein_coding
description:
  2-haloalkanoic acid dehalogenase, type II; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase, 2-haloalkanoic acid dehalogenase, type II.


ensembl_gene_id: PMI41_01264
symbol: EJN05473.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, Two-component sensor kinase N-terminal.


ensembl_gene_id: PMI41_01266
symbol: EJN04801.1
gene_biotype: protein_coding
description:
  ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.


ensembl_gene_id: PMI41_01267
symbol: lolD
gene_biotype: protein_coding
description:
  ABC-type antimicrobial peptide transport system, ATPase component; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.


ensembl_gene_id: PMI41_01268
symbol: EJN04803.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial DNA polymerase III alpha subunit, PHP domain, OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc).


ensembl_gene_id: PMI41_01272
symbol: EJN04807.1
gene_biotype: protein_coding
description:
  PFAM: GGDEF domain, Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI41_01273
symbol: rpmG
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: PMI41_01278
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: PMI41_01279
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I, bacterial; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removi [...]


ensembl_gene_id: PMI41_01282
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: PMI41_01284
symbol: pyrB
gene_biotype: protein_coding
description:
  PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain, Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: PMI41_01287
symbol: EJN04822.1
gene_biotype: protein_coding
description:
  RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: PMI41_01290
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: PMI41_01292
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: PMI41_01301
symbol: EJN04836.1
gene_biotype: protein_coding
description:
  TIGRFAM: outer membrane autotransporter barrel domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_01302
symbol: EJN04837.1
gene_biotype: protein_coding
description:
  PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_01303
symbol: EJN04838.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); PFAM: Carboxyl transferase domain.


ensembl_gene_id: PMI41_01306
symbol: EJN04841.1
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: lactoylglutathione lyase.


ensembl_gene_id: PMI41_01310
symbol: EJN04845.1
gene_biotype: protein_coding
description:
  PFAM: Serine acetyltransferase, N-terminal, Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase.


ensembl_gene_id: PMI41_01313
symbol: EJN04848.1
gene_biotype: protein_coding
description:
  Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats).


ensembl_gene_id: PMI41_01318
symbol: EJN04853.1
gene_biotype: protein_coding
description:
  Putative signal-transduction protein containing cAMP-binding and CBS domain containing protein; PFAM: CBS domain.


ensembl_gene_id: PMI41_01320
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: PMI41_01323
symbol: ndvA
gene_biotype: protein_coding
description:
  Glucan exporter ATP-binding protein; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: PMI41_01324
symbol: crcB
gene_biotype: protein_coding
description:
  Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: PMI41_01325
symbol: EJN04860.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: PMI41_01327
symbol: EJN04862.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine synthetase, catalytic domain, Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.


ensembl_gene_id: PMI41_01330
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: PMI41_01331
symbol: EJN04866.1
gene_biotype: protein_coding
description:
  Single stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: PMI41_01337
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: PMI41_01339
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: PMI41_01340
symbol: EJN04875.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: PMI41_01342
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: PMI41_01343
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase, queuosine-34-forming; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of  [...]


ensembl_gene_id: PMI41_01349
symbol: EJN04884.1
gene_biotype: protein_coding
description:
  Ectoine utilization protein EutE; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family; TIGRFAM: ectoine utilization protein EutE.


ensembl_gene_id: PMI41_01350
symbol: EJN04885.1
gene_biotype: protein_coding
description:
  Ectoine utilization protein EutD; PFAM: Metallopeptidase family M24, Creatinase/Prolidase N-terminal domain; TIGRFAM: ectoine utilization protein EutD.


ensembl_gene_id: PMI41_01351
symbol: EJN04886.1
gene_biotype: protein_coding
description:
  Ectoine utilization protein EutC; PFAM: Ornithine cyclodeaminase/mu-crystallin family; TIGRFAM: ectoine utilization protein EutC.


ensembl_gene_id: PMI41_01352
symbol: EJN04887.1
gene_biotype: protein_coding
description:
  Ectoine utilization protein EutB; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: ectoine utilization protein EutB.


ensembl_gene_id: PMI41_01354
symbol: EJN04889.1
gene_biotype: protein_coding
description:
  PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, ectoine/hydroxyectoine ABC transporter, permease protein EhuD.


ensembl_gene_id: PMI41_01355
symbol: EJN04890.1
gene_biotype: protein_coding
description:
  PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, ectoine/hydroxyectoine ABC transporter, permease protein EhuC.


ensembl_gene_id: PMI41_01356
symbol: EJN04891.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein.


ensembl_gene_id: PMI41_01358
symbol: EJN04893.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with HTH domain and aminotransferase domain containing protein; PFAM: Aminotransferase class I and II, Bacterial regulatory proteins, gntR family.


ensembl_gene_id: PMI41_01361
symbol: EJN04896.1
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PMI41_01363
symbol: dnaE2
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase III PolC; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: PMI41_01371
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: PMI41_01372
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: PMI41_01373
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: PMI41_01375
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: PMI41_01376
symbol: EJN04910.1
gene_biotype: protein_coding
description:
  Putative dithiol-disulfide isomerase involved in polyketide biosynthesis; PFAM: DSBA-like thioredoxin domain.


ensembl_gene_id: PMI41_01381
symbol: mntH
gene_biotype: protein_coding
description:
  Natural resistance-associated macrophage protein metal ion transporter NRAMP; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.


ensembl_gene_id: PMI41_01383
symbol: EJN04917.1
gene_biotype: protein_coding
description:
  Phosphatidylserine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI41_01388
symbol: EJN04922.1
gene_biotype: protein_coding
description:
  Putative ABC-type transport system, periplasmic component/surface lipoprotein; PFAM: Basic membrane protein.


ensembl_gene_id: PMI41_01389
symbol: EJN04923.1
gene_biotype: protein_coding
description:
  Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: PMI41_01403
symbol: EJN04937.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain; Belongs to the GST superfamily.


ensembl_gene_id: PMI41_01406
symbol: EJN04940.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI41_01410
symbol: EJN04944.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein BmrU; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family.


ensembl_gene_id: PMI41_01418
symbol: EJN04952.1
gene_biotype: protein_coding
description:
  PFAM: Substrate binding domain of ABC-type glycine betaine transport system (osmoprotectant binding protein).


ensembl_gene_id: PMI41_01419
symbol: EJN04953.1
gene_biotype: protein_coding
description:
  ABC-type proline/glycine betaine transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_01429
symbol: EJN04963.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase-related, FMN binding protein; PFAM: Pyridoxamine 5'-phosphate oxidase.


ensembl_gene_id: PMI41_01431
symbol: EJN04965.1
gene_biotype: protein_coding
description:
  Ca2+/H+ antiporter; PFAM: Sodium/calcium exchanger protein; TIGRFAM: calcium/proton exchanger, calcium/proton exchanger (cax).


ensembl_gene_id: PMI41_01432
symbol: EJN04966.1
gene_biotype: protein_coding
description:
  PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase; PFAM: GtrA-like protein, Glycosyl transferase family 2.


ensembl_gene_id: PMI41_01437
symbol: EJN04971.1
gene_biotype: protein_coding
description:
  DNA-binding domain-containing protein, AraC-type; PFAM: AraC-type transcriptional regulator N-terminus.


ensembl_gene_id: PMI41_01439
symbol: EJN04973.1
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.


ensembl_gene_id: PMI41_01442
symbol: EJN04976.1
gene_biotype: protein_coding
description:
  FMN reductase, MsuE subfamily; PFAM: NADPH-dependent FMN reductase; TIGRFAM: FMN reductase, MsuE subfamily.


ensembl_gene_id: PMI41_01457
symbol: tauB
gene_biotype: protein_coding
description:
  ABC-type taurine transport system, ATPase component; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.


ensembl_gene_id: PMI41_01461
symbol: EJN04995.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase.


ensembl_gene_id: PMI41_01462
symbol: EJN04996.1
gene_biotype: protein_coding
description:
  Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain, [2Fe-2S] binding domain.


ensembl_gene_id: PMI41_01467
symbol: dksA
gene_biotype: protein_coding
description:
  RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: PMI41_01468
symbol: EJN03833.1
gene_biotype: protein_coding
description:
  Phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA.


ensembl_gene_id: PMI41_01471
symbol: EJN03836.1
gene_biotype: protein_coding
description:
  TIGR01620 family protein; PFAM: Domain of unknown function (DUF697); TIGRFAM: TIGR01620 family protein.


ensembl_gene_id: PMI41_01475
symbol: EJN03840.1
gene_biotype: protein_coding
description:
  PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase.


ensembl_gene_id: PMI41_01476
symbol: EJN03841.1
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: PMI41_01484
symbol: EJN03849.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, auxiliary component; PFAM: Protein of unknown function (DUF330).


ensembl_gene_id: PMI41_01485
symbol: EJN03850.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in resistance to organic solvents, periplasmic component; PFAM: mce related protein.


ensembl_gene_id: PMI41_01486
symbol: EJN03851.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in resistance to organic solvents, ATPase component; PFAM: ABC transporter.


ensembl_gene_id: PMI41_01487
symbol: EJN03852.1
gene_biotype: protein_coding
description:
  Putative integral membrane protein; PFAM: Domain of unknown function DUF140, STAS domain; TIGRFAM: conserved hypothetical integral membrane protein.


ensembl_gene_id: PMI41_01488
symbol: EJN03853.1
gene_biotype: protein_coding
description:
  Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.


ensembl_gene_id: PMI41_01493
symbol: EJN03858.1
gene_biotype: protein_coding
description:
  PFAM: Malic enzyme, NAD binding domain, Phosphate acetyl/butaryl transferase, Malic enzyme, N-terminal domain.


ensembl_gene_id: PMI41_01495
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: PMI41_01496
symbol: EJN03861.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region, ABC transporter.


ensembl_gene_id: PMI41_01497
symbol: EJN03862.1
gene_biotype: protein_coding
description:
  PFAM: HAMP domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI41_01500
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: PMI41_01501
symbol: EJN03866.1
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: PMI41_01503
symbol: nhaA
gene_biotype: protein_coding
description:
  Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: PMI41_01511
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: PMI41_01512
symbol: EJN03877.1
gene_biotype: protein_coding
description:
  2-phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.


ensembl_gene_id: PMI41_01514
symbol: EJN03879.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Domain of unknown function (DUF407), Domain of unknown function (DUF404).


ensembl_gene_id: PMI41_01516
symbol: EJN03881.1
gene_biotype: protein_coding
description:
  Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily, Bacterial transglutaminase-like N-terminal region.


ensembl_gene_id: PMI41_01519
symbol: EJN03884.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Putative peptidoglycan binding domain, L,D-transpeptidase catalytic domain.


ensembl_gene_id: PMI41_01522
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: PMI41_01524
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: PMI41_01525
symbol: EJN03890.1
gene_biotype: protein_coding
description:
  PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB.


ensembl_gene_id: PMI41_01526
symbol: EJN03891.1
gene_biotype: protein_coding
description:
  Periplasmic component of amino acid ABC-type transporter/signal transduction system; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: lysine-arginine-ornithine-binding periplasmic protein.


ensembl_gene_id: PMI41_01531
symbol: EJN03896.1
gene_biotype: protein_coding
description:
  Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase.


ensembl_gene_id: PMI41_01538
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: PMI41_01539
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: PMI41_01542
symbol: dusA
gene_biotype: protein_coding
description:
  tRNA dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.


ensembl_gene_id: PMI41_01543
symbol: EJN03908.1
gene_biotype: protein_coding
description:
  Porin subfamily; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.


ensembl_gene_id: PMI41_01544
symbol: phnN
gene_biotype: protein_coding
description:
  Phosphonate metabolism protein, PRPP-forming 1,5-bisphosphokinase PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).


ensembl_gene_id: PMI41_01547
symbol: EJN03912.1
gene_biotype: protein_coding
description:
  PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphonate ABC transporter, permease protein PhnE.


ensembl_gene_id: PMI41_01549
symbol: EJN03914.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein, phosphonate ABC transporter, periplasmic phosphonate binding protein.


ensembl_gene_id: PMI41_01550
symbol: phnC
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.


ensembl_gene_id: PMI41_01551
symbol: EJN03916.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family.


ensembl_gene_id: PMI41_01554
symbol: EJN03919.1
gene_biotype: protein_coding
description:
  Putative enzyme of phosphonate metabolism; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.


ensembl_gene_id: PMI41_01555
symbol: EJN03920.1
gene_biotype: protein_coding
description:
  Putative enzyme of phosphonate metabolism; PFAM: Bacterial phosphonate metabolism protein (PhnI); overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_01556
symbol: EJN03921.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial phosphonate metabolism protein (PhnH); TIGRFAM: phosphonate C-P lyase system protein PhnH.


ensembl_gene_id: PMI41_01558
symbol: EJN03923.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory proteins, gntR family, UTRA domain; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF.


ensembl_gene_id: PMI41_01559
symbol: EJN03924.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase; TIGRFAM: PPOX class probable FMN-dependent enzyme, DR_2398 family.


ensembl_gene_id: PMI41_01562
symbol: EJN03927.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PMI41_01566
symbol: EJN03931.1
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase, N-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: PMI41_01572
symbol: EJN03937.1
gene_biotype: protein_coding
description:
  Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase, Molydopterin dinucleotide binding domain, Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: PMI41_01573
symbol: EJN03938.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.


ensembl_gene_id: PMI41_01577
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: PMI41_01579
symbol: cobB
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: PMI41_01580
symbol: EJN03945.1
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: PMI41_01581
symbol: cbiD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.


ensembl_gene_id: PMI41_01583
symbol: EJN03948.1
gene_biotype: protein_coding
description:
  Precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase.


ensembl_gene_id: PMI41_01588
symbol: EJN03953.1
gene_biotype: protein_coding
description:
  cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.


ensembl_gene_id: PMI41_01590
symbol: EJN03955.1
gene_biotype: protein_coding
description:
  PFAM: Cobalamin synthesis protein cobW C-terminal domain, CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: cobalamin biosynthesis protein CobW.


ensembl_gene_id: PMI41_01591
symbol: EJN03956.1
gene_biotype: protein_coding
description:
  Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.


ensembl_gene_id: PMI41_01592
symbol: EJN03957.1
gene_biotype: protein_coding
description:
  PFAM: Probable cobalt transporter subunit (CbtA); TIGRFAM: cobalt transporter subunit CbtA (proposed).


ensembl_gene_id: PMI41_01593
symbol: EJN03958.1
gene_biotype: protein_coding
description:
  PFAM: Probable cobalt transporter subunit (CbtB); TIGRFAM: cobalt transporter subunit CbtB (proposed).


ensembl_gene_id: PMI41_01594
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: PMI41_01596
symbol: EJN03961.1
gene_biotype: protein_coding
description:
  PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.


ensembl_gene_id: PMI41_01598
symbol: EJN03963.1
gene_biotype: protein_coding
description:
  ABC-type proline/glycine betaine transport system, periplasmic component; PFAM: Substrate binding domain of ABC-type glycine betaine transport system.


ensembl_gene_id: PMI41_01600
symbol: EJN03965.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter, CBS domain; TIGRFAM: glycine betaine/L-proline transport ATP binding subunit.


ensembl_gene_id: PMI41_01601
symbol: EJN03966.1
gene_biotype: protein_coding
description:
  PFAM: Trimethylamine methyltransferase (MTTB); Belongs to the trimethylamine methyltransferase family.


ensembl_gene_id: PMI41_01602
symbol: EJN03967.1
gene_biotype: protein_coding
description:
  PFAM: Glycine cleavage T-protein C-terminal barrel domain, Aminomethyltransferase folate-binding domain, FAD dependent oxidoreductase; Belongs to the GcvT family.


ensembl_gene_id: PMI41_01609
symbol: EJN03974.1
gene_biotype: protein_coding
description:
  Putative cobalamin binding protein; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain.


ensembl_gene_id: PMI41_01615
symbol: EJN03980.1
gene_biotype: protein_coding
description:
  PFAM: Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: PMI41_01619
symbol: cutC
gene_biotype: protein_coding
description:
  Hypothetical protein involved in copper resistance; Participates in the control of copper homeostasis. Belongs to the CutC family.


ensembl_gene_id: PMI41_01624
symbol: EJN03989.1
gene_biotype: protein_coding
description:
  PFAM: Aminomethyltransferase folate-binding domain, Glycine cleavage T-protein C-terminal barrel domain, FAD dependent oxidoreductase; Belongs to the GcvT family.


ensembl_gene_id: PMI41_01630
symbol: EJN03995.1
gene_biotype: protein_coding
description:
  4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: UbiA prenyltransferase family; Belongs to the UbiA prenyltransferase family.


ensembl_gene_id: PMI41_01634
symbol: EJN03999.1
gene_biotype: protein_coding
description:
  PFAM: Sarcosine oxidase, delta subunit family; TIGRFAM: sarcosine oxidase, delta subunit family, heterotetrameric form.


ensembl_gene_id: PMI41_01635
symbol: EJN04000.1
gene_biotype: protein_coding
description:
  Sarcosine oxidase, alpha subunit family, heterotetrameric form; PFAM: Glycine cleavage T-protein C-terminal barrel domain, Aminomethyltransferase folate-binding domain; TIGRFAM: sarcosine oxidase, alpha subunit family, heterotetrameric form.


ensembl_gene_id: PMI41_01636
symbol: EJN04001.1
gene_biotype: protein_coding
description:
  PFAM: Sarcosine oxidase, gamma subunit family; TIGRFAM: sarcosine oxidase, gamma subunit family, heterotetrameric form.


ensembl_gene_id: PMI41_01638
symbol: EJN04003.1
gene_biotype: protein_coding
description:
  Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.


ensembl_gene_id: PMI41_01643
symbol: EJN04008.1
gene_biotype: protein_coding
description:
  Kef-type K+ transport system, predicted NAD-binding component; PFAM: TrkA-N domain, Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family.


ensembl_gene_id: PMI41_01646
symbol: EJN04011.1
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysW; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein CysW, sulfate ABC transporter, permease protein.


ensembl_gene_id: PMI41_01647
symbol: EJN04012.1
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PMI41_01652
symbol: thiG
gene_biotype: protein_coding
description:
  Putative enzyme of thiazole biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: PMI41_01655
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: PMI41_01658
symbol: rpsU
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: PMI41_01669
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: PMI41_01672
symbol: kup
gene_biotype: protein_coding
description:
  K+ transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: PMI41_01673
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxine 5''-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: PMI41_01677
symbol: EJN04040.1
gene_biotype: protein_coding
description:
  Nitrile hydratase, beta subunit; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.


ensembl_gene_id: PMI41_01680
symbol: EJN04043.1
gene_biotype: protein_coding
description:
  PFAM: Small subunit of acetolactate synthase, ACT domain; TIGRFAM: acetolactate synthase, small subunit.


ensembl_gene_id: PMI41_01681
symbol: EJN04044.1
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type.


ensembl_gene_id: PMI41_01683
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA isopentenyltransferase MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: PMI41_01684
symbol: EJN04047.1
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase SerB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like, phosphoserine phosphatase SerB.


ensembl_gene_id: PMI41_01685
symbol: EJN04048.1
gene_biotype: protein_coding
description:
  Periplasmic serine protease, Do/DeqQ family; PFAM: Trypsin, PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; Belongs to the peptidase S1C family.


ensembl_gene_id: PMI41_01689
symbol: EJN04052.1
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: PMI41_01691
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: PMI41_01709
symbol: EJN04072.1
gene_biotype: protein_coding
description:
  FAD/FMN-dependent dehydrogenase; PFAM: FAD binding domain, FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD.


ensembl_gene_id: PMI41_01716
symbol: EJN04079.1
gene_biotype: protein_coding
description:
  Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus, Pyrrolo-quinoline quinone coenzyme C-terminus, PQQ enzyme repeat; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family.


ensembl_gene_id: PMI41_01721
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methylase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: PMI41_01729
symbol: EJN04092.1
gene_biotype: protein_coding
description:
  PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein.


ensembl_gene_id: PMI41_01730
symbol: EJN04093.1
gene_biotype: protein_coding
description:
  TIGR02453 family protein; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: TIGR02453 family protein.


ensembl_gene_id: PMI41_01731
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: PMI41_01733
symbol: bamD
gene_biotype: protein_coding
description:
  Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: PMI41_01738
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: PMI41_01739
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: PMI41_01740
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: PMI41_01741
symbol: ftsQ
gene_biotype: protein_coding
description:
  Cell division septal protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.


ensembl_gene_id: PMI41_01742
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: PMI41_01747
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: PMI41_01749
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: PMI41_01750
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: PMI41_01751
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: PMI41_01752
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: PMI41_01753
symbol: EJN04116.1
gene_biotype: protein_coding
description:
  Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain, Penicillin-binding Protein dimerization domain.


ensembl_gene_id: PMI41_01755
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: PMI41_01759
symbol: EJN04121.1
gene_biotype: protein_coding
description:
  Negative regulator of beta-lactamase expression; PFAM: Putative peptidoglycan binding domain, N-acetylmuramoyl-L-alanine amidase.


ensembl_gene_id: PMI41_01766
symbol: EJN04128.1
gene_biotype: protein_coding
description:
  S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase; PFAM: Protein of unknown function (DUF3419).


ensembl_gene_id: PMI41_01772
symbol: EJN04134.1
gene_biotype: protein_coding
description:
  PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: PMI41_01773
symbol: EJN04135.1
gene_biotype: protein_coding
description:
  Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Bacterial regulatory protein, arsR family, Methyltransferase domain.


ensembl_gene_id: PMI41_01781
symbol: EJN04142.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase; PFAM: Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Belongs to the TPP enzyme family.


ensembl_gene_id: PMI41_01783
symbol: EJN04144.1
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain, UDP-glucose/GDP-mannose dehydrogenase family, central domain, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase.


ensembl_gene_id: PMI41_01790
symbol: EJN04151.1
gene_biotype: protein_coding
description:
  Putative sugar phosphate isomerase; PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase.


ensembl_gene_id: PMI41_01798
symbol: ugpE
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, permease component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: PMI41_01799
symbol: ugpC
gene_biotype: protein_coding
description:
  ATPase component of ABC-type sugar transporter; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.


ensembl_gene_id: PMI41_01801
symbol: EJN04162.1
gene_biotype: protein_coding
description:
  ABC-type metal ion transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_01802
symbol: metN
gene_biotype: protein_coding
description:
  ABC-type metal ion transport system, ATPase component; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI41_01805
symbol: EJN04166.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain, GGDEF domain, PAS fold; TIGRFAM: PAS domain S-box, diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI41_01809
symbol: fbpC
gene_biotype: protein_coding
description:
  ABC-type spermidine/putrescine transport system, ATPase component; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI41_01810
symbol: EJN04171.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: PMI41_01811
symbol: EJN04172.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: PMI41_01814
symbol: def-2
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. Belongs to the polypeptide deformylase family.


ensembl_gene_id: PMI41_01815
symbol: EJN04176.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; PFAM: HAMP domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, PAS fold.


ensembl_gene_id: PMI41_01820
symbol: EJN04181.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized ACR, COG2135; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: PMI41_01851
symbol: EJN04212.1
gene_biotype: protein_coding
description:
  Molecular chaperone (small heat shock protein); PFAM: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: PMI41_01868
symbol: EJN04229.1
gene_biotype: protein_coding
description:
  PFAM: Prophage tail length tape measure protein; TIGRFAM: phage tail tape measure protein, lambda family.


ensembl_gene_id: PMI41_01884
symbol: EJN04245.1
gene_biotype: protein_coding
description:
  Phage-related protein, HI1409 family; PFAM: Protein of unknown function (DUF1073); TIGRFAM: phage-related protein, HI1409 family.


ensembl_gene_id: PMI41_01900
symbol: EJN04261.1
gene_biotype: protein_coding
description:
  PFAM: DnaB-like helicase N terminal domain, DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase.


ensembl_gene_id: PMI41_01932
symbol: EJN04293.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: PMI41_01935
symbol: EJN04295.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with sigma factor-related N-terminal domain containing protein; PFAM: Putative sugar-binding domain.


ensembl_gene_id: PMI41_01937
symbol: EJN04297.1
gene_biotype: protein_coding
description:
  Phosphotransferase system HPr (HPr) family protein; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: PMI41_01939
symbol: EJN04299.1
gene_biotype: protein_coding
description:
  Phosphotransferase system sorbitol-specific component IIBC; PFAM: Sorbitol phosphotransferase enzyme II C-terminus, Sorbitol phosphotransferase enzyme II N-terminus; TIGRFAM: PTS system, glucitol/sorbitol-specific, IIBC component.


ensembl_gene_id: PMI41_01940
symbol: EJN04300.1
gene_biotype: protein_coding
description:
  PFAM: PTS system enzyme II sorbitol-specific factor; TIGRFAM: PTS system, glucitol/sorbitol-specific, IIC component.


ensembl_gene_id: PMI41_01943
symbol: EJN04303.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: e3 binding domain, Biotin-requiring enzyme.


ensembl_gene_id: PMI41_01944
symbol: EJN04304.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; PFAM: Transketolase, C-terminal domain, Transketolase, pyrimidine binding domain.


ensembl_gene_id: PMI41_01951
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: PMI41_01952
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: PMI41_01958
symbol: carA
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain, Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.


ensembl_gene_id: PMI41_01966
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain, MGS-like domain, Carbamoyl-phosphate synthetase large chain, oligomerisation domain, Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.


ensembl_gene_id: PMI41_01967
symbol: EJN04327.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, permease and ATPase component; PFAM: ABC transporter transmembrane region 2.


ensembl_gene_id: PMI41_01977
symbol: EJN04337.1
gene_biotype: protein_coding
description:
  Trk-type K+ transport system, membrane component; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.


ensembl_gene_id: PMI41_01980
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: PMI41_01991
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: PMI41_01998
symbol: EJN04358.1
gene_biotype: protein_coding
description:
  Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain, Sporulation related domain.


ensembl_gene_id: PMI41_02011
symbol: EJN04371.1
gene_biotype: protein_coding
description:
  Export-related chaperone CsaA; PFAM: Putative tRNA binding domain; TIGRFAM: export-related chaperone CsaA.


ensembl_gene_id: PMI41_02018
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: PMI41_02020
symbol: EJN04380.1
gene_biotype: protein_coding
description:
  Hypothetical protein, YfiH family; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: PMI41_02023
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: PMI41_02024
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: PMI41_02025
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: PMI41_02026
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: PMI41_02030
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: PMI41_02032
symbol: EJN04392.1
gene_biotype: protein_coding
description:
  Cytochrome b subunit of the bc complex; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: PMI41_02033
symbol: EJN04393.1
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: PMI41_02034
symbol: EJN04394.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter, ABC transporter transmembrane region.


ensembl_gene_id: PMI41_02036
symbol: trmL
gene_biotype: protein_coding
description:
  Putative rRNA methylase SpoU family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: PMI41_02039
symbol: EJN04399.1
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: PMI41_02041
symbol: EJN04401.1
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase/poly(A) polymerase; PFAM: Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: PMI41_02053
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: PMI41_02056
symbol: EJN04416.1
gene_biotype: protein_coding
description:
  TrgB like protein; PFAM: NUDIX domain; TIGRFAM: nudix-type nucleoside diphosphatase, YffH/AdpP family.


ensembl_gene_id: PMI41_02057
symbol: EJN04417.1
gene_biotype: protein_coding
description:
  PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: PMI41_02058
symbol: EJN04418.1
gene_biotype: protein_coding
description:
  Anthranilate synthase; PFAM: Glutamine amidotransferase class-I, chorismate binding enzyme, Anthranilate synthase component I, N terminal region; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, anthranilate synthase, alpha proteobacterial clade.


ensembl_gene_id: PMI41_02059
symbol: fhs
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate synthetase; PFAM: Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.


ensembl_gene_id: PMI41_02060
symbol: EJN04420.1
gene_biotype: protein_coding
description:
  Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PMI41_02068
symbol: EJN04428.1
gene_biotype: protein_coding
description:
  PFAM: Substrate binding domain of ABC-type glycine betaine transport system; TIGRFAM: choline ABC transporter, periplasmic binding protein.


ensembl_gene_id: PMI41_02069
symbol: EJN04429.1
gene_biotype: protein_coding
description:
  Choline ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: choline ABC transporter, permease protein.


ensembl_gene_id: PMI41_02079
symbol: EJN04439.1
gene_biotype: protein_coding
description:
  Hypothetical protein-S-isoprenylcysteine methyltransferase; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family.


ensembl_gene_id: PMI41_02084
symbol: EJN04444.1
gene_biotype: protein_coding
description:
  Putative heme iron utilization protein; PFAM: Pyridoxamine 5'-phosphate oxidase, Protein of unknown function (DUF2470).


ensembl_gene_id: PMI41_02097
symbol: EJN04457.1
gene_biotype: protein_coding
description:
  C-terminal processing peptidase; PFAM: C-terminal domain of tail specific protease (DUF3340), Peptidase family S41, PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); Belongs to the peptidase S41A family.


ensembl_gene_id: PMI41_02100
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: PMI41_02101
symbol: EJN04461.1
gene_biotype: protein_coding
description:
  Putative PLP-dependent enzyme possibly involved in cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: PMI41_02118
symbol: EJN04477.1
gene_biotype: protein_coding
description:
  Phage protein, HK97 gp10 family; PFAM: Bacteriophage protein of unknown function (DUF646); TIGRFAM: phage protein, HK97 gp10 family.


ensembl_gene_id: PMI41_02136
symbol: EJN04495.1
gene_biotype: protein_coding
description:
  Zn-dependent carboxypeptidase; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.


ensembl_gene_id: PMI41_02144
symbol: EJN04503.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.


ensembl_gene_id: PMI41_02146
symbol: EJN04505.1
gene_biotype: protein_coding
description:
  Thiosulfate reductase cytochrome B subunit (membrane anchoring protein); PFAM: Prokaryotic cytochrome b561.


ensembl_gene_id: PMI41_02153
symbol: EJN04512.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: pfkB family carbohydrate kinase, Uncharacterized protein conserved in bacteria (DUF2090).


ensembl_gene_id: PMI41_02177
symbol: EJN04535.1
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain, Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family.


ensembl_gene_id: PMI41_02180
symbol: EJN04538.1
gene_biotype: protein_coding
description:
  Membrane protein TerC, possibly involved in tellurium resistance; PFAM: CBS domain, Integral membrane protein TerC family, Transporter associated domain.


ensembl_gene_id: PMI41_02181
symbol: EJN04539.1
gene_biotype: protein_coding
description:
  Putative GTPase, G3E family; PFAM: Cobalamin synthesis protein cobW C-terminal domain, CobW/HypB/UreG, nucleotide-binding domain.


ensembl_gene_id: PMI41_02183
symbol: EJN04541.1
gene_biotype: protein_coding
description:
  ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: PMI41_02201
symbol: EJN04559.1
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: PMI41_02210
symbol: EJN04567.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, periplasmic component; PFAM: Protein of unknown function (DUF1007).


ensembl_gene_id: PMI41_02211
symbol: EJN04568.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, permease component; PFAM: High-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: PMI41_02213
symbol: EJN04570.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase, teichoic and lipoteichoic acid D-alanine esterification; PFAM: short chain dehydrogenase.


ensembl_gene_id: PMI41_02224
symbol: EJN04581.1
gene_biotype: protein_coding
description:
  Oligoendopeptidase, pepF/M3 family; PFAM: Oligopeptidase F, Peptidase family M3; TIGRFAM: oligoendopeptidase, pepF/M3 family.


ensembl_gene_id: PMI41_02231
symbol: EJN04588.1
gene_biotype: protein_coding
description:
  5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: Calcineurin-like phosphoesterase, 5'-nucleotidase, C-terminal domain, LysM domain; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: PMI41_02232
symbol: EJN04589.1
gene_biotype: protein_coding
description:
  PFAM: Permease for cytosine/purines, uracil, thiamine, allantoin; TIGRFAM: NCS1 nucleoside transporter family.


ensembl_gene_id: PMI41_02233
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: PMI41_02238
symbol: EJN04595.1
gene_biotype: protein_coding
description:
  KpsF/GutQ family protein; PFAM: CBS domain, SIS domain; TIGRFAM: KpsF/GutQ family protein; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: PMI41_02243
symbol: EJN04600.1
gene_biotype: protein_coding
description:
  PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.


ensembl_gene_id: PMI41_02244
symbol: EJN04601.1
gene_biotype: protein_coding
description:
  PFAM: Conserved region in glutamate synthase, GXGXG motif, Glutamate synthase central domain, Glutamine amidotransferases class-II.


ensembl_gene_id: PMI41_02245
symbol: EJN04602.1
gene_biotype: protein_coding
description:
  Threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.


ensembl_gene_id: PMI41_02249
symbol: EJN04606.1
gene_biotype: protein_coding
description:
  PFAM: Inositol monophosphatase family; TIGRFAM: histidinol-phosphate phosphatase HisN, inositol monophosphatase family.


ensembl_gene_id: PMI41_02269
symbol: EJN04624.1
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: lactoylglutathione lyase.


ensembl_gene_id: PMI41_02276
symbol: EJN04631.1
gene_biotype: protein_coding
description:
  Phosphate transport regulator related to PhoU; PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein.


ensembl_gene_id: PMI41_02278
symbol: EJN04633.1
gene_biotype: protein_coding
description:
  PFAM: 6-phosphogluconate dehydrogenase, C-terminal domain, NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase (decarboxylating).


ensembl_gene_id: PMI41_02285
symbol: EJN04640.1
gene_biotype: protein_coding
description:
  Sarcosine oxidase, alpha subunit family, heterotetrameric form; PFAM: Aminomethyltransferase folate-binding domain, Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: sarcosine oxidase, alpha subunit family, heterotetrameric form, glycine cleavage system T protein.


ensembl_gene_id: PMI41_02292
symbol: EJN04647.1
gene_biotype: protein_coding
description:
  NAD/NADP transhydrogenase alpha subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the AlaDH/PNT family.


ensembl_gene_id: PMI41_02296
symbol: EJN04651.1
gene_biotype: protein_coding
description:
  Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding protein; PFAM: Protein of unknown function (DUF1470), CGNR zinc finger.


ensembl_gene_id: PMI41_02299
symbol: EJN04654.1
gene_biotype: protein_coding
description:
  TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: PMI41_02304
symbol: EJN04659.1
gene_biotype: protein_coding
description:
  Putative GTPase, G3E family; PFAM: CobW/HypB/UreG, nucleotide-binding domain, Cobalamin synthesis protein cobW C-terminal domain.


ensembl_gene_id: PMI41_02307
symbol: EJN03598.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: PMI41_02318
symbol: kduI
gene_biotype: protein_coding
description:
  5-keto 4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.


ensembl_gene_id: PMI41_02330
symbol: EJN03621.1
gene_biotype: protein_coding
description:
  Kef-type K+ transport system, predicted NAD-binding component; PFAM: Sodium/hydrogen exchanger family, Cyclic nucleotide-binding domain; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family.


ensembl_gene_id: PMI41_02332
symbol: EJN03623.1
gene_biotype: protein_coding
description:
  PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family, uncharacterized flavoprotein, PP_4765 family.


ensembl_gene_id: PMI41_02336
symbol: EJN03627.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctM subunit; PFAM: DctM-like transporters, Tripartite ATP-independent periplasmic transporters, DctQ component; TIGRFAM: TRAP transporter, DctM subunit.


ensembl_gene_id: PMI41_02339
symbol: EJN03630.1
gene_biotype: protein_coding
description:
  5-dehydro-4-deoxyglucarate dehydratase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.


ensembl_gene_id: PMI41_02348
symbol: EJN03639.1
gene_biotype: protein_coding
description:
  Membrane-fusion protein; PFAM: Peptidase family M50; overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_02353
symbol: EJN03644.1
gene_biotype: protein_coding
description:
  PFAM: D-alanyl-D-alanine carboxypeptidase, Sporulation related domain; Belongs to the peptidase S11 family.


ensembl_gene_id: PMI41_02361
symbol: EJN03652.1
gene_biotype: protein_coding
description:
  Type III secretory pathway, component EscS; PFAM: Bacterial export proteins, family 3; TIGRFAM: type III secretion protein, HrpO family.


ensembl_gene_id: PMI41_02363
symbol: EJN03654.1
gene_biotype: protein_coding
description:
  PFAM: Surface presentation of antigens (SPOA); TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ.


ensembl_gene_id: PMI41_02365
symbol: EJN03656.1
gene_biotype: protein_coding
description:
  ATPase FliI/YscN family; PFAM: ATP synthase alpha/beta family, beta-barrel domain, ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family.


ensembl_gene_id: PMI41_02368
symbol: EJN03659.1
gene_biotype: protein_coding
description:
  PFAM: Secretory protein of YscJ/FliF family; TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family.


ensembl_gene_id: PMI41_02372
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10, bacterial/organelle; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: PMI41_02373
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3, bacterial; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: PMI41_02375
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: PMI41_02376
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2, bacterial/organellar; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: PMI41_02377
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19, bacterial/organelle; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: PMI41_02378
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22, bacterial type; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: PMI41_02379
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3, bacterial type; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: PMI41_02380
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16, bacterial/organelle; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: PMI41_02381
symbol: rpmC
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: PMI41_02382
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: PMI41_02383
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14, bacterial/organelle; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: PMI41_02384
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24, bacterial/organelle; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: PMI41_02385
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: PMI41_02386
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: PMI41_02387
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: PMI41_02388
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: PMI41_02389
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18, bacterial type; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: PMI41_02390
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: PMI41_02392
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: PMI41_02393
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: PMI41_02394
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase family protein; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: PMI41_02395
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: PMI41_02396
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: PMI41_02397
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PMI41_02404
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; PFAM: Anticodon binding domain, Threonyl and Alanyl tRNA synthetase second additional domain, tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI41_02414
symbol: EJN03421.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain), e3 binding domain, Biotin-requiring enzyme.


ensembl_gene_id: PMI41_02415
symbol: EJN03422.1
gene_biotype: protein_coding
description:
  Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; TIGRFAM: dihydrolipoamide dehydrogenase.


ensembl_gene_id: PMI41_02416
symbol: trmFO
gene_biotype: protein_coding
description:
  tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: PMI41_02426
symbol: EJN03432.1
gene_biotype: protein_coding
description:
  PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PMI41_02427
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: PMI41_02482
symbol: EJN03488.1
gene_biotype: protein_coding
description:
  Type IV secretory pathway, protease TraF; PFAM: Peptidase S26; TIGRFAM: conjugative transfer signal peptidase TraF.


ensembl_gene_id: PMI41_02502
symbol: EJN03508.1
gene_biotype: protein_coding
description:
  Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.


ensembl_gene_id: PMI41_02504
symbol: EJN03510.1
gene_biotype: protein_coding
description:
  PFAM: N-6 DNA Methylase, HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).


ensembl_gene_id: PMI41_02518
symbol: EJN03524.1
gene_biotype: protein_coding
description:
  DNA repair protein radc; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family.


ensembl_gene_id: PMI41_02520
symbol: sfsA
gene_biotype: protein_coding
description:
  PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; Belongs to the SfsA family.


ensembl_gene_id: PMI41_02525
symbol: EJN03530.1
gene_biotype: protein_coding
description:
  poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I.


ensembl_gene_id: PMI41_02528
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 3 (chain A); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: PMI41_02529
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PMI41_02530
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: PMI41_02532
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: PMI41_02533
symbol: EJN03538.1
gene_biotype: protein_coding
description:
  PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.


ensembl_gene_id: PMI41_02534
symbol: EJN03539.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: PMI41_02536
symbol: EJN03541.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: PMI41_02537
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 1 (chain H); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: PMI41_02538
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PMI41_02539
symbol: EJN03544.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 6 (chain J); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PMI41_02540
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: PMI41_02541
symbol: EJN03546.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH dehydrogenase subunit 5 C-terminus, NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus, NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L.


ensembl_gene_id: PMI41_02542
symbol: EJN03547.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains, NADH-ubiquinone oxidoreductase chain 4, amino terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M.


ensembl_gene_id: PMI41_02543
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: PMI41_02544
symbol: EJN03549.1
gene_biotype: protein_coding
description:
  biotin-(acetyl-CoA carboxylase) ligase; PFAM: Biotin protein ligase C terminal domain, Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region.


ensembl_gene_id: PMI41_02545
symbol: EJN03550.1
gene_biotype: protein_coding
description:
  PFAM: Metallo-beta-lactamase superfamily, RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein.


ensembl_gene_id: PMI41_02546
symbol: EJN03551.1
gene_biotype: protein_coding
description:
  methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase.


ensembl_gene_id: PMI41_02549
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase, family II; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.


ensembl_gene_id: PMI41_02553
symbol: EJN03007.1
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; PFAM: tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: PMI41_02555
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: PMI41_02557
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: PMI41_02559
symbol: EJN03013.1
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme.


ensembl_gene_id: PMI41_02560
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: PMI41_02561
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: PMI41_02565
symbol: EJN03019.1
gene_biotype: protein_coding
description:
  DnaJ-class molecular chaperone with C-terminal Zn finger domain containing protein; PFAM: DnaJ domain, DnaJ C terminal region.


ensembl_gene_id: PMI41_02567
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: PMI41_02573
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain, Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; Belongs to the GARS family.


ensembl_gene_id: PMI41_02574
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate polyprenyl transferase, proteobacterial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: PMI41_02577
symbol: EJN03031.1
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: PMI41_02580
symbol: glyQ
gene_biotype: protein_coding
description:
  PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit.


ensembl_gene_id: PMI41_02584
symbol: EJN03038.1
gene_biotype: protein_coding
description:
  Putative O-methyltransferase; PFAM: Methyltransferase small domain; Belongs to the methyltransferase superfamily.


ensembl_gene_id: PMI41_02585
symbol: EJN03039.1
gene_biotype: protein_coding
description:
  ClpP class periplasmic serine protease; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type.


ensembl_gene_id: PMI41_02587
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: PMI41_02588
symbol: EJN03042.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: PMI41_02592
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase, F0 subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: PMI41_02593
symbol: atpF-2
gene_biotype: protein_coding
description:
  F0F1-type ATP synthase, beta subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: PMI41_02594
symbol: atpE
gene_biotype: protein_coding
description:
  F0F1-type ATP synthase, subunit c/archaeal/vacuolar-type H+-ATPase, subunit K; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: PMI41_02600
symbol: der
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: PMI41_02604
symbol: EJN03058.1
gene_biotype: protein_coding
description:
  ABC-type long-chain fatty acid transport system, fused permease and ATPase component; PFAM: SbmA/BacA-like family.


ensembl_gene_id: PMI41_02612
symbol: ribH
gene_biotype: protein_coding
description:
  Riboflavin synthase beta-chain; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: PMI41_02618
symbol: EJN03071.1
gene_biotype: protein_coding
description:
  TIGRFAM: Haloacid Dehalogenase Superfamily Class (subfamily) IIA, HAD-superfamily class IIA hydrolase, TIGR01459.


ensembl_gene_id: PMI41_02619
symbol: EJN03072.1
gene_biotype: protein_coding
description:
  PFAM: FGGY family of carbohydrate kinases, N-terminal domain, FGGY family of carbohydrate kinases, C-terminal domain.


ensembl_gene_id: PMI41_02621
symbol: EJN03074.1
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: PMI41_02623
symbol: EJN03076.1
gene_biotype: protein_coding
description:
  Phosphoglycerate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: PMI41_02624
symbol: EJN03077.1
gene_biotype: protein_coding
description:
  PFAM: FGGY family of carbohydrate kinases, N-terminal domain, FGGY family of carbohydrate kinases, C-terminal domain; Belongs to the FGGY kinase family.


ensembl_gene_id: PMI41_02626
symbol: EJN03079.1
gene_biotype: protein_coding
description:
  ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PMI41_02635
symbol: EJN03088.1
gene_biotype: protein_coding
description:
  PFAM: Phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative.


ensembl_gene_id: PMI41_02637
symbol: EJN03090.1
gene_biotype: protein_coding
description:
  tRNA/rRNA cytosine-C5-methylase; PFAM: NOL1/NOP2/sun family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: PMI41_02645
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5''-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: PMI41_02649
symbol: rlmE
gene_biotype: protein_coding
description:
  23S rRNA methylase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: PMI41_02660
symbol: EJN03113.1
gene_biotype: protein_coding
description:
  PFAM: Penicillin-Binding Protein C-terminus Family, Penicillin binding protein transpeptidase domain, Transglycosylase; TIGRFAM: penicillin-binding protein 1C.


ensembl_gene_id: PMI41_02661
symbol: EJN03114.1
gene_biotype: protein_coding
description:
  Large extracellular alpha-helical protein; PFAM: Alpha-macro-globulin thiol-ester bond-forming region, A-macroglobulin complement component, Alpha-2-macroglobulin family, MG2 domain, PAN domain, Alpha-2-macroglobulin MG1 domain, Alpha-2-macroglobulin family N-terminal region.


ensembl_gene_id: PMI41_02664
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: PMI41_02665
symbol: EJN03118.1
gene_biotype: protein_coding
description:
  Formate dehydrogenase, alpha subunit, archaeal-type; PFAM: Molybdopterin oxidoreductase, Molydopterin dinucleotide binding domain, NADH-ubiquinone oxidoreductase-G iron-sulfur binding region, Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type.


ensembl_gene_id: PMI41_02666
symbol: EJN03119.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region, Respiratory-chain NADH dehydrogenase 51 Kd subunit, SLBB domain.


ensembl_gene_id: PMI41_02672
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: PMI41_02675
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4''-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: PMI41_02676
symbol: EJN03129.1
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: PMI41_02682
symbol: EJN03135.1
gene_biotype: protein_coding
description:
  Putative Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain, Insulinase (Peptidase family M16); overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_02684
symbol: EJN03137.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmD family; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family.


ensembl_gene_id: PMI41_02685
symbol: EJN03138.1
gene_biotype: protein_coding
description:
  PFAM: RNA pseudouridylate synthase, S4 domain; TIGRFAM: pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: PMI41_02686
symbol: tadA
gene_biotype: protein_coding
description:
  Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: PMI41_02689
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).


ensembl_gene_id: PMI41_02692
symbol: EJN03145.1
gene_biotype: protein_coding
description:
  PFAM: Riboflavin kinase, FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family.


ensembl_gene_id: PMI41_02696
symbol: EJN03149.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.


ensembl_gene_id: PMI41_02698
symbol: groS
gene_biotype: protein_coding
description:
  Co-chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: PMI41_02699
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: PMI41_02703
symbol: EJN03156.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix; overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_02707
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: PMI41_02709
symbol: msrA
gene_biotype: protein_coding
description:
  methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: PMI41_02711
symbol: EJN03164.1
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.


ensembl_gene_id: PMI41_02712
symbol: hisZ
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase involved in histidine biosynthesis; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.


ensembl_gene_id: PMI41_02713
symbol: hisS
gene_biotype: protein_coding
description:
  PFAM: Anticodon binding domain, tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase.


ensembl_gene_id: PMI41_02726
symbol: EJN03179.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: PMI41_02727
symbol: EJN03180.1
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase, plant type; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.


ensembl_gene_id: PMI41_02734
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: PMI41_02739
symbol: EJN02747.1
gene_biotype: protein_coding
description:
  Ribulose kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain, FGGY family of carbohydrate kinases, C-terminal domain.


ensembl_gene_id: PMI41_02743
symbol: EJN02751.1
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.


ensembl_gene_id: PMI41_02745
symbol: EJN02753.1
gene_biotype: protein_coding
description:
  ABC-type polysaccharide/polyol phosphate export system, permease component; PFAM: ABC-2 type transporter; TIGRFAM: ABC transporter efflux protein, DrrB family.


ensembl_gene_id: PMI41_02756
symbol: EJN02762.1
gene_biotype: protein_coding
description:
  Glycine cleavage system T protein; PFAM: Aminomethyltransferase folate-binding domain, Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein.


ensembl_gene_id: PMI41_02757
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: PMI41_02758
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase, decarboxylating; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: PMI41_02765
symbol: EJN02771.1
gene_biotype: protein_coding
description:
  P-type DNA transfer ATPase VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.


ensembl_gene_id: PMI41_02774
symbol: EJN02780.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter, ABC transporter transmembrane region; TIGRFAM: type I secretion system ABC transporter, PrtD family.


ensembl_gene_id: PMI41_02775
symbol: EJN02781.1
gene_biotype: protein_coding
description:
  PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.


ensembl_gene_id: PMI41_02791
symbol: EJN02631.1
gene_biotype: protein_coding
description:
  P-type ATPase, translocating; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC.


ensembl_gene_id: PMI41_02792
symbol: kdpC
gene_biotype: protein_coding
description:
  K+-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: PMI41_02793
symbol: EJN02633.1
gene_biotype: protein_coding
description:
  Osmosensitive K+ channel histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, Osmosensitive K+ channel His kinase sensor domain, Universal stress protein family.


ensembl_gene_id: PMI41_02798
symbol: EJN02637.1
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanylyltransferase; PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase), Nucleotidyl transferase, Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.


ensembl_gene_id: PMI41_02800
symbol: betB
gene_biotype: protein_coding
description:
  Glycine betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.


ensembl_gene_id: PMI41_02801
symbol: betA
gene_biotype: protein_coding
description:
  Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.


ensembl_gene_id: PMI41_02802
symbol: EJN02641.1
gene_biotype: protein_coding
description:
  Choline-sulfatase; PFAM: Choline sulfatase enzyme C terminal, Sulfatase; TIGRFAM: choline-sulfatase.


ensembl_gene_id: PMI41_02804
symbol: EJN02643.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain, Thiolase, N-terminal domain; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PMI41_02812
symbol: corA
gene_biotype: protein_coding
description:
  Magnesium Mg(2+) and cobalt Co(2+) transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.


ensembl_gene_id: PMI41_02813
symbol: EJN02652.1
gene_biotype: protein_coding
description:
  PFAM: Methylmalonyl-CoA mutase, B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain, methylmalonyl-CoA mutase C-terminal domain.


ensembl_gene_id: PMI41_02818
symbol: EJN02657.1
gene_biotype: protein_coding
description:
  PFAM: Autotransporter beta-domain, Subtilase family; TIGRFAM: outer membrane autotransporter barrel domain, autotransporter-associated beta strand repeat.


ensembl_gene_id: PMI41_02834
symbol: EJN02084.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III, exodeoxyribonuclease III (xth).


ensembl_gene_id: PMI41_02866
symbol: EJN02115.1
gene_biotype: protein_coding
description:
  4-aminobutyrate aminotransferase family protein; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PMI41_02871
symbol: EJN02120.1
gene_biotype: protein_coding
description:
  Putative membrane-associated, metal-dependent hydrolase; PFAM: Sulfatase, Domain of unknown function (DUF1705).


ensembl_gene_id: PMI41_02886
symbol: EJN02135.1
gene_biotype: protein_coding
description:
  DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain.


ensembl_gene_id: PMI41_02889
symbol: EJN02138.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: YcaO-like family; TIGRFAM: uncharacterized domain, bacteriocin biosynthesis docking scaffold, SagD family.


ensembl_gene_id: PMI41_02893
symbol: EJN02142.1
gene_biotype: protein_coding
description:
  Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase.


ensembl_gene_id: PMI41_02896
symbol: EJN02145.1
gene_biotype: protein_coding
description:
  Putative methylase of HemK family; PFAM: Methyltransferase small domain; TIGRFAM: HemK family putative methylases.


ensembl_gene_id: PMI41_02899
symbol: EJN02148.1
gene_biotype: protein_coding
description:
  Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family.


ensembl_gene_id: PMI41_02906
symbol: nadE-2
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: PMI41_02907
symbol: EJN02156.1
gene_biotype: protein_coding
description:
  acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme; TIGRFAM: amino acid adenylation domain.


ensembl_gene_id: PMI41_02911
symbol: EJN02160.1
gene_biotype: protein_coding
description:
  Hypothetical protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein, CobQ/CobB/MinD/ParA nucleotide binding domain.


ensembl_gene_id: PMI41_02930
symbol: EJN02179.1
gene_biotype: protein_coding
description:
  ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: LppC putative lipoprotein.


ensembl_gene_id: PMI41_02933
symbol: EJN02182.1
gene_biotype: protein_coding
description:
  PFAM: Siderophore-interacting protein, Uncharacterized protein conserved in bacteria (DUF2218), Siderophore-interacting FAD-binding domain.


ensembl_gene_id: PMI41_02955
symbol: EJN02204.1
gene_biotype: protein_coding
description:
  Transcriptional accessory protein; PFAM: Tex-like protein N-terminal domain, S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region.


ensembl_gene_id: PMI41_02963
symbol: EJN02212.1
gene_biotype: protein_coding
description:
  DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain, FtsK/SpoIIIE family; Belongs to the FtsK/SpoIIIE/SftA family.


ensembl_gene_id: PMI41_02972
symbol: EJN02221.1
gene_biotype: protein_coding
description:
  5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: 5'-nucleotidase, C-terminal domain, Calcineurin-like phosphoesterase; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: PMI41_02975
symbol: hmgA
gene_biotype: protein_coding
description:
  Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.


ensembl_gene_id: PMI41_02976
symbol: EJN02225.1
gene_biotype: protein_coding
description:
  2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family.


ensembl_gene_id: PMI41_02977
symbol: EJN02226.1
gene_biotype: protein_coding
description:
  Maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; TIGRFAM: maleylacetoacetate isomerase.


ensembl_gene_id: PMI41_02978
symbol: EJN02227.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase.


ensembl_gene_id: PMI41_02985
symbol: EJN02234.1
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphate synthase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI41_03010
symbol: EJN02259.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, periplasmic component; PFAM: TAT (twin-arginine translocation) pathway signal sequence, Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.


ensembl_gene_id: PMI41_03020
symbol: EJN02269.1
gene_biotype: protein_coding
description:
  N-methylhydantoinase B/acetone carboxylase, alpha subunit; PFAM: Hydantoinase/oxoprolinase, Hydantoinase B/oxoprolinase, Hydantoinase/oxoprolinase N-terminal region.


ensembl_gene_id: PMI41_03037
symbol: EJN02286.1
gene_biotype: protein_coding
description:
  PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: PMI41_03053
symbol: araG
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, ATPase component; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.


ensembl_gene_id: PMI41_03073
symbol: EJN02321.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: Replication protein C N-terminal domain, Replication protein C C-terminal region.


ensembl_gene_id: PMI41_03074
symbol: EJN02322.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate-dependent enzyme, probable carboxylase/decarboxylase/carboligase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.


ensembl_gene_id: PMI41_03090
symbol: EJN02338.1
gene_biotype: protein_coding
description:
  Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative.


ensembl_gene_id: PMI41_03091
symbol: EJN02339.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.


ensembl_gene_id: PMI41_03130
symbol: anmK
gene_biotype: protein_coding
description:
  Molecular chaperone; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: PMI41_03134
symbol: EJN02382.1
gene_biotype: protein_coding
description:
  ABC-type polar amino acid transport system, ATPase component; PFAM: Binding-protein-dependent transport system inner membrane component, ABC transporter; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.


ensembl_gene_id: PMI41_03141
symbol: EJN02389.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Activator of Hsp90 ATPase 1-like protein; TIGRFAM: YD repeat (two copies).


ensembl_gene_id: PMI41_03163
symbol: EJN02411.1
gene_biotype: protein_coding
description:
  DNA ligase, ATP-dependent, PP_1105 family; PFAM: ATP dependent DNA ligase domain, DNA ligase N terminus, ATP dependent DNA ligase C terminal region; TIGRFAM: DNA ligase, ATP-dependent, PP_1105 family.


ensembl_gene_id: PMI41_03166
symbol: EJN02414.1
gene_biotype: protein_coding
description:
  DEXH box helicase, DNA ligase-associated; PFAM: Helicase conserved C-terminal domain, DEAD/H associated, DEAD/DEAH box helicase; TIGRFAM: DEXH box helicase, DNA ligase-associated.


ensembl_gene_id: PMI41_03169
symbol: vapC
gene_biotype: protein_coding
description:
  Putative nucleic acid-binding protein, contains PIN domain containing protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: PMI41_03174
symbol: EJN02422.1
gene_biotype: protein_coding
description:
  Putative Na+-dependent transporter; PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter.


ensembl_gene_id: PMI41_03180
symbol: EJN02428.1
gene_biotype: protein_coding
description:
  5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: PMI41_03181
symbol: hmuV
gene_biotype: protein_coding
description:
  ABC-type hemin transport system, ATPase component; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI41_03182
symbol: EJN02430.1
gene_biotype: protein_coding
description:
  ABC-type cobalamin transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: PMI41_03199
symbol: EJN02447.1
gene_biotype: protein_coding
description:
  Histidine utilization repressor; PFAM: Bacterial regulatory proteins, gntR family, UTRA domain; TIGRFAM: histidine utilization repressor, proteobacterial.


ensembl_gene_id: PMI41_03205
symbol: cpdA
gene_biotype: protein_coding
description:
  Putative phosphohydrolase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: PMI41_03209
symbol: EJN02457.1
gene_biotype: protein_coding
description:
  tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: tonB-system energizer ExbB.


ensembl_gene_id: PMI41_03211
symbol: EJN02459.1
gene_biotype: protein_coding
description:
  TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.


ensembl_gene_id: PMI41_03221
symbol: EJN02469.1
gene_biotype: protein_coding
description:
  PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain.


ensembl_gene_id: PMI41_03223
symbol: EJN02471.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Domain of unknown function (DUF1704); TIGRFAM: conserved hypothetical protein.


ensembl_gene_id: PMI41_03224
symbol: gshB
gene_biotype: protein_coding
description:
  Glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); PFAM: Prokaryotic glutathione synthetase, N-terminal domain, Prokaryotic glutathione synthetase, ATP-grasp domain; TIGRFAM: glutathione synthetase, prokaryotic; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: PMI41_03235
symbol: EJN02483.1
gene_biotype: protein_coding
description:
  PFAM: Autotransporter beta-domain, Endonuclease/Exonuclease/phosphatase family; TIGRFAM: outer membrane autotransporter barrel domain, autotransporter-associated beta strand repeat.


ensembl_gene_id: PMI41_03238
symbol: EJN02486.1
gene_biotype: protein_coding
description:
  PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain, Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: PMI41_03248
symbol: EJN02496.1
gene_biotype: protein_coding
description:
  PFAM: Autotransporter beta-domain, Putative Ig domain; TIGRFAM: outer membrane autotransporter barrel domain.


ensembl_gene_id: PMI41_03254
symbol: EJN02502.1
gene_biotype: protein_coding
description:
  Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.


ensembl_gene_id: PMI41_03260
symbol: EJN02508.1
gene_biotype: protein_coding
description:
  PFAM: haemagglutination activity domain; TIGRFAM: adhesin HecA family 20-residue repeat (two copies), filamentous hemagglutinin family N-terminal domain.


ensembl_gene_id: PMI41_03262
symbol: EJN02510.1
gene_biotype: protein_coding
description:
  Hemolysin activation/secretion protein; PFAM: Haemolysin secretion/activation protein ShlB/FhaC/HecB, POTRA domain, ShlB-type.


ensembl_gene_id: PMI41_03264
symbol: EJN02512.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4, TnsA endonuclease N terminal.


ensembl_gene_id: PMI41_03277
symbol: EJN02525.1
gene_biotype: protein_coding
description:
  DNA-methyltransferase Dcm; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm).


ensembl_gene_id: PMI41_03278
symbol: EJN02526.1
gene_biotype: protein_coding
description:
  DNA mismatch repair enzyme (predicted ATPase); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: PMI41_03292
symbol: EJN02540.1
gene_biotype: protein_coding
description:
  Sulfur acquisition oxidoreductase, SfnB family; PFAM: Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, N-terminal domain; TIGRFAM: sulfur acquisition oxidoreductase, SfnB family.


ensembl_gene_id: PMI41_03298
symbol: EJN02546.1
gene_biotype: protein_coding
description:
  Response regulator with putative antiterminator output domain; PFAM: Response regulator receiver domain, ANTAR domain.


ensembl_gene_id: PMI41_03301
symbol: EJN02549.1
gene_biotype: protein_coding
description:
  Nitrate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: nitrate ABC transporter, permease protein.


ensembl_gene_id: PMI41_03303
symbol: EJN02551.1
gene_biotype: protein_coding
description:
  NAD(P)H-dependent nitrite reductase, large subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase, Nitrite and sulphite reductase 4Fe-4S domain, BFD-like [2Fe-2S] binding domain, Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: nitrite reductase [NAD(P)H], large subunit.


ensembl_gene_id: PMI41_03305
symbol: EJN02553.1
gene_biotype: protein_coding
description:
  Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase, Molydopterin dinucleotide binding domain, BFD-like [2Fe-2S] binding domain, Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.


ensembl_gene_id: PMI41_03306
symbol: EJN02554.1
gene_biotype: protein_coding
description:
  Siroheme synthase containing protein; PFAM: Sirohaem synthase dimerization region, Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: siroheme synthase, N-terminal domain.


ensembl_gene_id: PMI41_03308
symbol: EJN02556.1
gene_biotype: protein_coding
description:
  Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor, Secretin and TonB N terminus short domain.


ensembl_gene_id: PMI41_03312
symbol: EJN02560.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PMI41_03318
symbol: argS
gene_biotype: protein_coding
description:
  arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain, Arginyl tRNA synthetase N terminal domain, tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.


ensembl_gene_id: PMI41_03319
symbol: EJN01606.1
gene_biotype: protein_coding
description:
  PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative, uncharacterized domain HDIG; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: PMI41_03320
symbol: EJN01607.1
gene_biotype: protein_coding
description:
  PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.


ensembl_gene_id: PMI41_03327
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: PMI41_03334
symbol: EJN01621.1
gene_biotype: protein_coding
description:
  PFAM: UDP-glucoronosyl and UDP-glucosyl transferase, Glycosyltransferase family 28 N-terminal domain.


ensembl_gene_id: PMI41_03344
symbol: EJN01629.1
gene_biotype: protein_coding
description:
  Ca2+-binding protein, RTX toxin; PFAM: Hemolysin-type calcium-binding repeat (2 copies), Bacterial pre-peptidase C-terminal domain, Peptidase M10 serralysin C terminal.


ensembl_gene_id: PMI41_03358
symbol: nnrD
gene_biotype: protein_coding
description:
  yjeF-like protein, hydroxyethylthiazole kinase-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate d [...]


ensembl_gene_id: PMI41_03366
symbol: EJN01651.1
gene_biotype: protein_coding
description:
  PFAM: Alanine dehydrogenase/PNT, C-terminal domain, Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; Belongs to the AlaDH/PNT family.


ensembl_gene_id: PMI41_03377
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: PMI41_03378
symbol: ade
gene_biotype: protein_coding
description:
  Adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.


ensembl_gene_id: PMI41_03383
symbol: EJN01667.1
gene_biotype: protein_coding
description:
  Putative nuleotide-utilizing enzyme, moeA; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain.


ensembl_gene_id: PMI41_03385
symbol: gpt
gene_biotype: protein_coding
description:
  PRPP-binding protein, adenine/guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.


ensembl_gene_id: PMI41_03387
symbol: EJN01671.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: PMI41_03391
symbol: modC
gene_biotype: protein_coding
description:
  Molybdenum ABC transporter, ATP-binding protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.


ensembl_gene_id: PMI41_03392
symbol: EJN01676.1
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PMI41_03393
symbol: EJN01677.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein.


ensembl_gene_id: PMI41_03399
symbol: EJN01683.1
gene_biotype: protein_coding
description:
  Trehalose-6-phosphate synthase; PFAM: Glycosyltransferase family 20; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming].


ensembl_gene_id: PMI41_03415
symbol: EJN01699.1
gene_biotype: protein_coding
description:
  Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; Overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_03416
symbol: EJN01700.1
gene_biotype: protein_coding
description:
  Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; PFAM: XdhC and CoxI family; overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_03420
symbol: EJN01704.1
gene_biotype: protein_coding
description:
  PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: PMI41_03422
symbol: EJN01706.1
gene_biotype: protein_coding
description:
  PFAM: Lyase, Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: PMI41_03440
symbol: EJN01724.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phosphoacceptor) domain, PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: PMI41_03450
symbol: EJN01368.1
gene_biotype: protein_coding
description:
  Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: AraC-type transcriptional regulator N-terminus.


ensembl_gene_id: PMI41_03451
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: PMI41_03454
symbol: EJN01372.1
gene_biotype: protein_coding
description:
  Protease II; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain, Prolyl oligopeptidase family.


ensembl_gene_id: PMI41_03455
symbol: msrB
gene_biotype: protein_coding
description:
  PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: PMI41_03461
symbol: vapC-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: PMI41_03465
symbol: EJN01383.1
gene_biotype: protein_coding
description:
  Putative peptidoglycan-binding domain-containing protein; PFAM: Putative peptidoglycan binding domain.


ensembl_gene_id: PMI41_03493
symbol: EJN01411.1
gene_biotype: protein_coding
description:
  PFAM: Phage QLRG family, putative DNA packaging; TIGRFAM: phage conserved hypothetical protein, phiE125 gp8 family.


ensembl_gene_id: PMI41_03500
symbol: EJN01418.1
gene_biotype: protein_coding
description:
  TIGR02217 family protein; PFAM: Conserved hypothetical protein 2217 (DUF2460); TIGRFAM: TIGR02217 family protein.


ensembl_gene_id: PMI41_03501
symbol: EJN01419.1
gene_biotype: protein_coding
description:
  PFAM: Phage conserved hypothetical protein BR0599, Uncharacterized conserved protein (DUF2163); TIGRFAM: phage conserved hypothetical protein BR0599.


ensembl_gene_id: PMI41_03510
symbol: ccmE
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: PMI41_03562
symbol: EJN00539.1
gene_biotype: protein_coding
description:
  FGGY-family pentulose kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain, FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: FGGY-family pentulose kinase.


ensembl_gene_id: PMI41_03563
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: PMI41_03565
symbol: EJN00542.1
gene_biotype: protein_coding
description:
  Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain.


ensembl_gene_id: PMI41_03580
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: PMI41_03582
symbol: xylA
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; Belongs to the xylose isomerase family.


ensembl_gene_id: PMI41_03583
symbol: xylB
gene_biotype: protein_coding
description:
  D-xylulose kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain, FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase.


ensembl_gene_id: PMI41_03590
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI41_03592
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: PMI41_03593
symbol: glnD
gene_biotype: protein_coding
description:
  (protein-PII) uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.


ensembl_gene_id: PMI41_03594
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: PMI41_03597
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: PMI41_03598
symbol: EJN00575.1
gene_biotype: protein_coding
description:
  PFAM: SpoU rRNA Methylase family, RNA 2'-O ribose methyltransferase substrate binding; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: PMI41_03599
symbol: EJN00576.1
gene_biotype: protein_coding
description:
  Putative SAM-dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase; Belongs to the methyltransferase superfamily.


ensembl_gene_id: PMI41_03602
symbol: ihfB
gene_biotype: protein_coding
description:
  Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: PMI41_03606
symbol: EJN00583.1
gene_biotype: protein_coding
description:
  ABC-type (unclassified) transport system, ATPase component; PFAM: ABC transporter, Branched-chain amino acid ATP-binding cassette transporter.


ensembl_gene_id: PMI41_03607
symbol: EJN00584.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: PMI41_03608
symbol: hpf
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: PMI41_03609
symbol: EJN00586.1
gene_biotype: protein_coding
description:
  PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN, PTS system, fructose subfamily, IIA component.


ensembl_gene_id: PMI41_03611
symbol: EJN00588.1
gene_biotype: protein_coding
description:
  Cellobiose phosphorylase; PFAM: Glycosyltransferase family 36, Uncharacterized protein conserved in bacteria (DUF2329), Putative carbohydrate binding domain, Glycosyltransferase 36 associated family.


ensembl_gene_id: PMI41_03612
symbol: cysA
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PMI41_03619
symbol: EJN00596.1
gene_biotype: protein_coding
description:
  SCO1/SenC/PrrC protein; Involved in biogenesis of respiratory and photosynthetic systems; PFAM: SCO1/SenC.


ensembl_gene_id: PMI41_03629
symbol: EJN00606.1
gene_biotype: protein_coding
description:
  ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: PMI41_03633
symbol: EJN00610.1
gene_biotype: protein_coding
description:
  Redox-sensitive transcriptional activator SoxR; PFAM: MerR family regulatory protein, MerR, DNA binding; TIGRFAM: redox-sensitive transcriptional activator SoxR.


ensembl_gene_id: PMI41_03634
symbol: mntP
gene_biotype: protein_coding
description:
  Putative membrane protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.


ensembl_gene_id: PMI41_03635
symbol: EJN00612.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II, Phosphoglucomutase/phosphomannomutase, C-terminal domain, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.


ensembl_gene_id: PMI41_03654
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: PMI41_03663
symbol: EJN00452.1
gene_biotype: protein_coding
description:
  Fused ATPase/permease component of ABC-type transporter involved in cytochrome bd biogenesis; PFAM: ABC transporter; TIGRFAM: thiol reductant ABC exporter, CydC subunit.


ensembl_gene_id: PMI41_03664
symbol: EJN00453.1
gene_biotype: protein_coding
description:
  Cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydD; PFAM: ABC transporter, ABC transporter transmembrane region; TIGRFAM: thiol reductant ABC exporter, CydD subunit.


ensembl_gene_id: PMI41_03668
symbol: EJN00457.1
gene_biotype: protein_coding
description:
  Tat-translocated enzyme; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.


ensembl_gene_id: PMI41_03672
symbol: EJN00344.1
gene_biotype: protein_coding
description:
  ATP-grasp enzyme, D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: PMI41_03683
symbol: EJN00355.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PFAM: Aminotransferase class IV.


ensembl_gene_id: PMI41_03686
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor TU; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: PMI41_03705
symbol: queE
gene_biotype: protein_coding
description:
  Organic radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: PMI41_03706
symbol: EJM99814.1
gene_biotype: protein_coding
description:
  PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD, 6-pyruvoyl tetrahydropterin synthase/QueD family protein.


ensembl_gene_id: PMI41_03707
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: PMI41_03709
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: PMI41_03712
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: PMI41_03713
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: PMI41_03714
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: PMI41_03715
symbol: xerC
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: PMI41_03720
symbol: EJM99828.1
gene_biotype: protein_coding
description:
  Putative threonine efflux protein; PFAM: LysE type translocator; TIGRFAM: The Resistance to Homoserine/Threonine (RhtB) Family protein.


ensembl_gene_id: PMI41_03721
symbol: EJM99829.1
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: PMI41_03722
symbol: EJM99830.1
gene_biotype: protein_coding
description:
  PFAM: Dehydrogenase E1 component, Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component.


ensembl_gene_id: PMI41_03723
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: PMI41_03724
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: PMI41_03725
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.


ensembl_gene_id: PMI41_03732
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: PMI41_03733
symbol: EJM99841.1
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme; PFAM: Radical SAM superfamily, Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme, radical SAM methylthiotransferase, MiaB/RimO family.


ensembl_gene_id: PMI41_03734
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: PMI41_03735
symbol: EJM99843.1
gene_biotype: protein_coding
description:
  Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: PMI41_03738
symbol: EJM99846.1
gene_biotype: protein_coding
description:
  Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.


ensembl_gene_id: PMI41_03739
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: PMI41_03740
symbol: EJM99848.1
gene_biotype: protein_coding
description:
  Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.


ensembl_gene_id: PMI41_03741
symbol: ccmA
gene_biotype: protein_coding
description:
  Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.


ensembl_gene_id: PMI41_03749
symbol: EJM99856.1
gene_biotype: protein_coding
description:
  Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; PFAM: ABC transporter.


ensembl_gene_id: PMI41_03751
symbol: EJM99858.1
gene_biotype: protein_coding
description:
  2''-5'' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: PMI41_03755
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: PMI41_03758
symbol: argG
gene_biotype: protein_coding
description:
  PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: PMI41_03763
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: PMI41_03766
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: PMI41_03767
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: PMI41_03778
symbol: EJM99884.1
gene_biotype: protein_coding
description:
  ParB-like partition protein; PFAM: ParB-like nuclease domain, KorB domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family.


ensembl_gene_id: PMI41_03780
symbol: rsmG
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: PMI41_03781
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: PMI41_03782
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: PMI41_03784
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: PMI41_03786
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: PMI41_03787
symbol: EJM99893.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: PMI41_03788
symbol: EJM99894.1
gene_biotype: protein_coding
description:
  MAF protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.


ensembl_gene_id: PMI41_03789
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: PMI41_03790
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: PMI41_03791
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: PMI41_03792
symbol: secB
gene_biotype: protein_coding
description:
  Protein-export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: PMI41_03799
symbol: hslU
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: PMI41_03800
symbol: EJM99906.1
gene_biotype: protein_coding
description:
  Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family, Siderophore biosynthesis protein domain.


ensembl_gene_id: PMI41_03801
symbol: hslV
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: PMI41_03804
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: PMI41_03805
symbol: hisA
gene_biotype: protein_coding
description:
  PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.


ensembl_gene_id: PMI41_03806
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: PMI41_03808
symbol: coaA
gene_biotype: protein_coding
description:
  Pantothenate kinase, bacterial type; PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: pantothenate kinase, bacterial type.


ensembl_gene_id: PMI41_03812
symbol: pckA
gene_biotype: protein_coding
description:
  ATP-dependent phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.


ensembl_gene_id: PMI41_03815
symbol: EJM99921.1
gene_biotype: protein_coding
description:
  Serine kinase of the HPr protein, regulates carbohydrate metabolism; PFAM: HPr Serine kinase C-terminal domain.


ensembl_gene_id: PMI41_03816
symbol: EJM99922.1
gene_biotype: protein_coding
description:
  Phosphotransferase system, mannose/fructose-specific component IIA; PFAM: PTS system fructose IIA component.


ensembl_gene_id: PMI41_03818
symbol: EJM99924.1
gene_biotype: protein_coding
description:
  Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase.


ensembl_gene_id: PMI41_03819
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: PMI41_03821
symbol: EJM99927.1
gene_biotype: protein_coding
description:
  ATPase, YjeE family; PFAM: Phosphotransferase enzyme family, Uncharacterized P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family.


ensembl_gene_id: PMI41_03824
symbol: EJM99930.1
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; TIGRFAM: double-strand break repair helicase AddA, alphaproteobacterial type; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: PMI41_03826
symbol: EJM99932.1
gene_biotype: protein_coding
description:
  PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: PMI41_03827
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: PMI41_03828
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: PMI41_03829
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: PMI41_03836
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: PMI41_03838
symbol: rpmI
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: PMI41_03839
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: PMI41_03840
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F), Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: PMI41_03842
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain, Ferredoxin-fold anticodon binding domain, B3/4 domain, Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: PMI41_03845
symbol: EJM99951.1
gene_biotype: protein_coding
description:
  Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase; PFAM: Aspartyl/Asparaginyl beta-hydroxylase.


ensembl_gene_id: PMI41_03855
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: PMI41_03857
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5''-phosphate decarboxylase, subfamily 1; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: PMI41_03860
symbol: EJM99966.1
gene_biotype: protein_coding
description:
  Rhs element Vgr protein; PFAM: Phage-related baseplate assembly protein; TIGRFAM: Rhs element Vgr protein, type VI secretion system Vgr family protein.


ensembl_gene_id: PMI41_03864
symbol: EJM99970.1
gene_biotype: protein_coding
description:
  Alpha-1,2-mannosidase, putative; PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative.


ensembl_gene_id: PMI41_03866
symbol: EJM99972.1
gene_biotype: protein_coding
description:
  Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies); TIGRFAM: type 1 secretion C-terminal target domain (VC_A0849 subclass).


ensembl_gene_id: PMI41_03867
symbol: EJM99973.1
gene_biotype: protein_coding
description:
  Altronate dehydratase; PFAM: SAF domain, D-galactarate dehydratase / Altronate hydrolase, C terminus.


ensembl_gene_id: PMI41_03868
symbol: EJM99974.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: PMI41_03869
symbol: EJM99975.1
gene_biotype: protein_coding
description:
  Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold, Oxidoreductase family, C-terminal alpha/beta domain; overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_03870
symbol: EJM99976.1
gene_biotype: protein_coding
description:
  Putative dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain, Oxidoreductase family, NAD-binding Rossmann fold; overlaps another CDS with the same product name.


ensembl_gene_id: PMI41_03879
symbol: rlpA
gene_biotype: protein_coding
description:
  Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: PMI41_03880
symbol: gshB-2
gene_biotype: protein_coding
description:
  PFAM: Prokaryotic glutathione synthetase, N-terminal domain, Prokaryotic glutathione synthetase, ATP-grasp domain; TIGRFAM: glutathione synthetase, prokaryotic; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: PMI41_03881
symbol: EJM99987.1
gene_biotype: protein_coding
description:
  Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein.


ensembl_gene_id: PMI41_03889
symbol: EJM99994.1
gene_biotype: protein_coding
description:
  Formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: formaldehyde dehydrogenase, glutathione-independent.


ensembl_gene_id: PMI41_03890
symbol: EJM99995.1
gene_biotype: protein_coding
description:
  ABC-type enterobactin transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: PMI41_03893
symbol: EJM99998.1
gene_biotype: protein_coding
description:
  ABC-type Fe2+-enterobactin transport system, periplasmic component; PFAM: Periplasmic binding protein.


ensembl_gene_id: PMI41_03895
symbol: EJN00001.1
gene_biotype: protein_coding
description:
  PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: PMI41_03898
symbol: EJN00004.1
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthase/amino acid adenylation enzyme; PFAM: Thioesterase domain, Phosphopantetheine attachment site, Condensation domain, AMP-binding enzyme; TIGRFAM: amino acid adenylation domain, non-ribosomal peptide synthase domain TIGR01720.


ensembl_gene_id: PMI41_03909
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase, BPG-dependent, family 1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: PMI41_03910
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: PMI41_03912
symbol: glk
gene_biotype: protein_coding
description:
  PFAM: Glucokinase; TIGRFAM: glucokinase, proteobacterial type; Belongs to the bacterial glucokinase family.


ensembl_gene_id: PMI41_03918
symbol: EJN00023.1
gene_biotype: protein_coding
description:
  Putative Fe-S protein; PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, putative.


ensembl_gene_id: PMI41_03920
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: PMI41_03924
symbol: EJN00029.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with sigma factor-related N-terminal domain containing protein; PFAM: Sigma-70, region 4, Putative sugar-binding domain.


ensembl_gene_id: PMI41_03934
symbol: EJN00039.1
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: PMI41_03936
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: PMI41_03937
symbol: EJN00042.1
gene_biotype: protein_coding
description:
  TIGR02300 family protein; PFAM: Protein of unknown function (FYDLN_acid); TIGRFAM: TIGR02300 family protein.


ensembl_gene_id: PMI41_03955
symbol: EJN00059.1
gene_biotype: protein_coding
description:
  Maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain; TIGRFAM: maleylacetoacetate isomerase.


ensembl_gene_id: PMI41_03958
symbol: EJN00062.1
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: PMI41_03960
symbol: EJN00064.1
gene_biotype: protein_coding
description:
  PFAM: MerR family regulatory protein, MerR, DNA binding; TIGRFAM: Cu(I)-responsive transcriptional regulator.


ensembl_gene_id: PMI41_03961
symbol: EJN00065.1
gene_biotype: protein_coding
description:
  Copper/silver-translocating P-type ATPase; PFAM: YHS domain, E1-E2 ATPase, haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase, heavy metal translocating P-type ATPase, ATPase, P-type (transporting), HAD superfamily, subfamily IC.


ensembl_gene_id: PMI41_03964
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: PMI41_03968
symbol: grpE
gene_biotype: protein_coding
description:
  Molecular chaperone GrpE (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle.  [...]


ensembl_gene_id: PMI41_03969
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat shock gene repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: PMI41_03970
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: PMI41_03972
symbol: EJN00076.1
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: PMI41_03973
symbol: EJN00077.1
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: PMI41_03974
symbol: rsmI
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: PMI41_03977
symbol: EJN00081.1
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family.  In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.


ensembl_gene_id: PMI41_03979
symbol: EJN00083.1
gene_biotype: protein_coding
description:
  Sulfite reductase, beta subunit (hemoprotein); PFAM: Nitrite and sulphite reductase 4Fe-4S domain, Nitrite/Sulfite reductase ferredoxin-like half domain.


ensembl_gene_id: PMI41_03980
symbol: EJN00084.1
gene_biotype: protein_coding
description:
  Thioredoxin-dependent phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: PMI41_03987
symbol: pncB
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.


ensembl_gene_id: PMI41_03990
symbol: EJN00094.1
gene_biotype: protein_coding
description:
  NADPH-dependent glutamate synthase beta chain-like oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: PMI41_03991
symbol: EJN00095.1
gene_biotype: protein_coding
description:
  PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein.


ensembl_gene_id: PMI41_03994
symbol: EJN00098.1
gene_biotype: protein_coding
description:
  Amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40, Peptidase dimerization domain; TIGRFAM: amidase, hydantoinase/carbamoylase family.


ensembl_gene_id: PMI41_04007
symbol: EJN00111.1
gene_biotype: protein_coding
description:
  Dihydroxyacid dehydratase/phosphogluconate dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: PMI41_04028
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: PMI41_04033
symbol: EJM99574.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.


ensembl_gene_id: PMI41_04038
symbol: EJM99579.1
gene_biotype: protein_coding
description:
  Na+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: PMI41_04041
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: PMI41_04043
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: PMI41_04051
symbol: EJM99592.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: PMI41_04052
symbol: EJM99593.1
gene_biotype: protein_coding
description:
  2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.


ensembl_gene_id: PMI41_04053
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: PMI41_04054
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: PMI41_04055
symbol: deoA
gene_biotype: protein_coding
description:
  Thymidine phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.


ensembl_gene_id: PMI41_04056
symbol: EJM99597.1
gene_biotype: protein_coding
description:
  Purine nucleotide phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: PMI41_04057
symbol: EJM99598.1
gene_biotype: protein_coding
description:
  Cytidine deaminase, homotetrameric; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: PMI41_04077
symbol: EJM99617.1
gene_biotype: protein_coding
description:
  Putative sugar phosphate isomerase involved in capsule formation; PFAM: SIS domain; TIGRFAM: 6-phospho 3-hexuloisomerase.


ensembl_gene_id: PMI41_04099
symbol: EJM99639.1
gene_biotype: protein_coding
description:
  Acyl CoA:acetate/3-ketoacid CoA transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.


ensembl_gene_id: PMI41_04105
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: PMI41_04106
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: PMI41_04107
symbol: EJM99208.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; PFAM: GAF domain, PEP-utilising enzyme, mobile domain, PEP-utilising enzyme, TIM barrel domain, PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PMI41_04108
symbol: EJM99209.1
gene_biotype: protein_coding
description:
  PFAM: ACT domain, Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class, aspartate kinase; Belongs to the aspartokinase family.


ensembl_gene_id: PMI41_04109
symbol: ubiG
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: PMI41_04111
symbol: EJM99212.1
gene_biotype: protein_coding
description:
  Cytotoxic translational repressor of toxin-antitoxin stability system; PFAM: Plasmid stabilisation system protein.


ensembl_gene_id: PMI41_04115
symbol: EJM99216.1
gene_biotype: protein_coding
description:
  Glutaredoxin, GrxC family; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: PMI41_04116
symbol: EJM99217.1
gene_biotype: protein_coding
description:
  Putative amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.


ensembl_gene_id: PMI41_04121
symbol: argJ
gene_biotype: protein_coding
description:
  Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: PMI41_04123
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: PMI41_04136
symbol: EJM99237.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region, ABC transporter; TIGRFAM: type I secretion system ABC transporter, PrtD family.


ensembl_gene_id: PMI41_04143
symbol: EJM99243.1
gene_biotype: protein_coding
description:
  3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein.


ensembl_gene_id: PMI41_04144
symbol: EJM99244.1
gene_biotype: protein_coding
description:
  Glutamyl- or glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI41_04146
symbol: EJM99246.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN).


ensembl_gene_id: PMI41_04149
symbol: EJM99249.1
gene_biotype: protein_coding
description:
  PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: PMI41_04153
symbol: EJM99253.1
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.


ensembl_gene_id: PMI41_04157
symbol: EJM99257.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671; Belongs to the UPF0178 family.


ensembl_gene_id: PMI41_04158
symbol: EJM99258.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, DbpA RNA binding domain, DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: PMI41_04162
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: PMI41_04164
symbol: EJM99264.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: PMI41_04165
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: PMI41_04169
symbol: EJM99269.1
gene_biotype: protein_coding
description:
  Hypothetical protein involved in cation transport; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.


ensembl_gene_id: PMI41_04172
symbol: hisC
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: PMI41_04173
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: PMI41_04176
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: PMI41_04180
symbol: rpmB
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: PMI41_04181
symbol: EJM99281.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: PMI41_04183
symbol: EJM99283.1
gene_biotype: protein_coding
description:
  Cobaltochelatase, CobT subunit; PFAM: Cobalamin biosynthesis protein CobT VWA domain, Cobalamin biosynthesis protein CobT; TIGRFAM: cobaltochelatase, CobT subunit.


ensembl_gene_id: PMI41_04184
symbol: EJM99284.1
gene_biotype: protein_coding
description:
  Cobaltochelatase, CobS subunit; PFAM: AAA domain (dynein-related subfamily), Cobaltochelatase CobS subunit N terminal; TIGRFAM: cobaltochelatase, CobS subunit.


ensembl_gene_id: PMI41_04185
symbol: EJM99285.1
gene_biotype: protein_coding
description:
  DnaJ-class molecular chaperone with C-terminal Zn finger domain containing protein; PFAM: DnaJ domain.


ensembl_gene_id: PMI41_04188
symbol: EJM99288.1
gene_biotype: protein_coding
description:
  Putative Mg2+ and Co2+ transporter CorB; PFAM: CBS domain, Domain of unknown function DUF21, Transporter associated domain.


ensembl_gene_id: PMI41_04189
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: PMI41_04190
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: PMI41_04191
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: PMI41_04193
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: PMI41_04203
symbol: EJM99302.1
gene_biotype: protein_coding
description:
  Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: PMI41_04205
symbol: EJM99304.1
gene_biotype: protein_coding
description:
  Putative redox protein, regulator of disulfide bond formation; PFAM: SirA-like protein; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: PMI41_04210
symbol: EJM99308.1
gene_biotype: protein_coding
description:
  Peptidylarginine deiminase-like enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.


ensembl_gene_id: PMI41_04215
symbol: EJM99313.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein.


ensembl_gene_id: PMI41_04219
symbol: EJM99317.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain.


ensembl_gene_id: PMI41_04225
symbol: EJM99323.1
gene_biotype: protein_coding
description:
  Putative exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: Metallo-beta-lactamase superfamily.


ensembl_gene_id: PMI41_04231
symbol: EJM99329.1
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase, family 4; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: probable DNA metabolism protein, uracil-DNA glycosylase, family 4, uracil-DNA glycosylase family domain.


ensembl_gene_id: PMI41_04235
symbol: EJM99333.1
gene_biotype: protein_coding
description:
  PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit, precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.


ensembl_gene_id: PMI41_04236
symbol: EJM99334.1
gene_biotype: protein_coding
description:
  precorrin-3B synthase; PFAM: Nitrite and sulphite reductase 4Fe-4S domain, Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: precorrin-3B synthase.


ensembl_gene_id: PMI41_04238
symbol: EJM99336.1
gene_biotype: protein_coding
description:
  Precorrin-2 C20-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: PMI41_04239
symbol: EJM99337.1
gene_biotype: protein_coding
description:
  precorrin-3B C17-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases, Cobalamin synthesis G N-terminal; TIGRFAM: precorrin-3B C17-methyltransferase.


ensembl_gene_id: PMI41_04248
symbol: rpoH
gene_biotype: protein_coding
description:
  Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: PMI41_04250
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: PMI41_04253
symbol: EJM99350.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase.


ensembl_gene_id: PMI41_04254
symbol: EJM99351.1
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: PMI41_04257
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: PMI41_04258
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: PMI41_04259
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: PMI41_04260
symbol: cpoB
gene_biotype: protein_coding
description:
  Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: PMI41_04261
symbol: pal
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PMI41_04262
symbol: tolB
gene_biotype: protein_coding
description:
  Tol-pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PMI41_04265
symbol: tolQ
gene_biotype: protein_coding
description:
  TolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PMI41_04266
symbol: EJM99362.1
gene_biotype: protein_coding
description:
  PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family, tol-pal system-associated acyl-CoA thioesterase.


ensembl_gene_id: PMI41_04267
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase, RuvB subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: PMI41_04269
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase, RuvA subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: PMI41_04270
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: PMI41_04277
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: PMI41_04282
symbol: EJM99378.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region, ABC transporter; TIGRFAM: ABC transporter, permease/ATP-binding protein.


ensembl_gene_id: PMI41_04283
symbol: rpmE
gene_biotype: protein_coding
description:
  Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.


ensembl_gene_id: PMI41_04289
symbol: EJM99385.1
gene_biotype: protein_coding
description:
  Membrane protein TerC, possibly involved in tellurium resistance; PFAM: Integral membrane protein TerC family.


ensembl_gene_id: PMI41_04291
symbol: EJM99387.1
gene_biotype: protein_coding
description:
  5,10-methenyltetrahydrofolate synthetase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase.


ensembl_gene_id: PMI41_04297
symbol: ku
gene_biotype: protein_coding
description:
  Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: PMI41_04298
symbol: EJM99393.1
gene_biotype: protein_coding
description:
  PFAM: ATP dependent DNA ligase domain, ATP dependent DNA ligase C terminal region; TIGRFAM: DNA polymerase LigD, ligase domain, DNA ligase D, DNA ligase D, 3'-phosphoesterase domain, DNA polymerase LigD, polymerase domain.


ensembl_gene_id: PMI41_04305
symbol: EJM99400.1
gene_biotype: protein_coding
description:
  Hypothetical protein-tyrosine phosphatase; PFAM: PAP2 superfamily, Dual specificity phosphatase, catalytic domain.


ensembl_gene_id: PMI41_04308
symbol: EJM99403.1
gene_biotype: protein_coding
description:
  Putative CDP-diglyceride synthetase/phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family.


ensembl_gene_id: PMI41_04311
symbol: EJM99406.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, CHASE3 domain.


ensembl_gene_id: PMI41_04313
symbol: EJM99408.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain.


ensembl_gene_id: PMI41_04314
symbol: EJM99409.1
gene_biotype: protein_coding
description:
  TRAP-type mannitol/chloroaromatic compound transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.


ensembl_gene_id: PMI41_04316
symbol: EJM99411.1
gene_biotype: protein_coding
description:
  PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg); Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: PMI41_04321
symbol: EJM99416.1
gene_biotype: protein_coding
description:
  Transcriptional activator of acetoin/glycerol metabolism; PFAM: GAF domain, Bacterial regulatory protein, Fis family.


ensembl_gene_id: PMI41_04326
symbol: EJM99421.1
gene_biotype: protein_coding
description:
  Outer membrane cobalamin receptor protein; PFAM: TonB dependent receptor, TonB-dependent Receptor Plug Domain.


ensembl_gene_id: PMI41_04330
symbol: EJM99424.1
gene_biotype: protein_coding
description:
  PFAM: Taurine catabolism dioxygenase TauD, TfdA family; TIGRFAM: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent.


ensembl_gene_id: PMI41_04332
symbol: EJM99426.1
gene_biotype: protein_coding
description:
  precorrin-6A synthase, deacetylating; Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.


ensembl_gene_id: PMI41_04352
symbol: EJM99445.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, permease and ATPase component; PFAM: ABC transporter, ABC transporter transmembrane region 2.


ensembl_gene_id: PMI41_04354
symbol: EJM99447.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain, Transcriptional regulatory protein, C terminal; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB.


ensembl_gene_id: PMI41_04355
symbol: EJM99448.1
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: PMI41_04356
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: PMI41_04357
symbol: EJM99450.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstA; PFAM: Binding-protein-dependent transport system inner membrane component, Domain of unknown function (DUF3333); TIGRFAM: phosphate ABC transporter, permease protein PstA.


ensembl_gene_id: PMI41_04358
symbol: EJM99451.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PMI41_04365
symbol: EJM99458.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain containing protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: PMI41_04373
symbol: EJM99466.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.


ensembl_gene_id: PMI41_04375
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, PurK protein; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: PMI41_04376
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, PurE protein; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: PMI41_04381
symbol: EJM99474.1
gene_biotype: protein_coding
description:
  Putative small protein containing a coiled-coil domain containing protein; PFAM: Protein of unknown function (DUF1192).


ensembl_gene_id: PMI41_04382
symbol: EJM99475.1
gene_biotype: protein_coding
description:
  Putative NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; TIGRFAM: putative NAD(P)H quinone oxidoreductase, PIG3 family.


ensembl_gene_id: PMI41_04391
symbol: EJM99484.1
gene_biotype: protein_coding
description:
  acyl-CoA synthetase/AMP-acid ligase; PFAM: Domain of unknown function (DUF3448), AMP-binding enzyme.


ensembl_gene_id: PMI41_04395
symbol: EJM99488.1
gene_biotype: protein_coding
description:
  PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: PMI41_04396
symbol: EJM99489.1
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: PMI41_04398
symbol: EJM99491.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: PMI41_04403
symbol: EJM99496.1
gene_biotype: protein_coding
description:
  PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain, Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase.


ensembl_gene_id: PMI41_04404
symbol: EJM99497.1
gene_biotype: protein_coding
description:
  PFAM: Thiolase, C-terminal domain, Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases, 3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PMI41_04407
symbol: EJM99500.1
gene_biotype: protein_coding
description:
  PFAM: IclR helix-turn-helix domain, Bacterial transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family.


ensembl_gene_id: PMI41_04408
symbol: EJM99501.1
gene_biotype: protein_coding
description:
  Pca operon transcription factor PcaQ; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain; TIGRFAM: pca operon transcription factor PcaQ; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PMI41_04410
symbol: EJM99503.1
gene_biotype: protein_coding
description:
  Marine proteobacterial sortase target protein; PFAM: von Willebrand factor type A domain, Vault protein inter-alpha-trypsin; TIGRFAM: marine proteobacterial sortase target protein.


ensembl_gene_id: PMI41_04411
symbol: EJM99504.1
gene_biotype: protein_coding
description:
  PFAM: Sortase family; TIGRFAM: sortase, marine proteobacterial type, LPXTG-site transpeptidase (sortase) family protein.


ensembl_gene_id: PMI41_04414
symbol: EJM99507.1
gene_biotype: protein_coding
description:
  PFAM: Protocatechuate 3,4-dioxygenase beta subunit N terminal, Dioxygenase; TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit.


ensembl_gene_id: PMI41_04430
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: PMI41_04431
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: PMI41_04432
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: PMI41_04434
symbol: EJM98674.1
gene_biotype: protein_coding
description:
  Putative metal-binding protein, possibly nucleic-acid binding protein; PFAM: Uncharacterized ACR, COG1399.


ensembl_gene_id: PMI41_04437
symbol: hppA
gene_biotype: protein_coding
description:
  Vacuolar-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: PMI41_04439
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: PMI41_04440
symbol: ribH-2
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: PMI41_04442
symbol: EJM98682.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: PMI41_04443
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: PMI41_04452
symbol: bpt
gene_biotype: protein_coding
description:
  Putative arginyl-tRNA:protein arginylyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: PMI41_04454
symbol: parC
gene_biotype: protein_coding
description:
  Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: PMI41_04456
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: PMI41_04457
symbol: rnd
gene_biotype: protein_coding
description:
  Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.


ensembl_gene_id: PMI41_04466
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase 1; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: PMI41_04479
symbol: EJM98719.1
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: cystathionine beta-lyase, bacterial.


ensembl_gene_id: PMI41_04494
symbol: EJM98732.1
gene_biotype: protein_coding
description:
  ATPase involved in DNA replication initiation; PFAM: Bacterial dnaA protein; Belongs to the DnaA family.


ensembl_gene_id: PMI41_04496
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein, N-terminal domain, AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase.


ensembl_gene_id: PMI41_04497
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: PMI41_04502
symbol: rlmJ
gene_biotype: protein_coding
description:
  Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA.


ensembl_gene_id: PMI41_04508
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: PMI41_04509
symbol: EJM98747.1
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI41_04512
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: PMI41_04528
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: PMI41_04531
symbol: lptD
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.


ensembl_gene_id: PMI41_04533
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: PMI41_04534
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: PMI41_04535
symbol: EJM98773.1
gene_biotype: protein_coding
description:
  ABC-type bacteriocin/lantibiotic exporter; PFAM: ABC transporter, ABC transporter transmembrane region.


ensembl_gene_id: PMI41_04539
symbol: EJM98777.1
gene_biotype: protein_coding
description:
  TIGR00255 family protein; PFAM: YicC-like family, N-terminal region, Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein.


ensembl_gene_id: PMI41_04540
symbol: mltG
gene_biotype: protein_coding
description:
  YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: PMI41_04541
symbol: EJM98779.1
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: PMI41_04543
symbol: EJM98781.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PMI41_04546
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: PMI41_04551
symbol: EJM98789.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: PMI41_04552
symbol: EJM98790.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: PMI41_04553
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: PMI41_04555
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: PMI41_04560
symbol: EJM98798.1
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase 2, CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PMI41_04561
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase precursor-related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: PMI41_04562
symbol: EJM98800.1
gene_biotype: protein_coding
description:
  Fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly; PFAM: ABC transporter, ABC transporter transmembrane region.


ensembl_gene_id: PMI41_04565
symbol: EJM98803.1
gene_biotype: protein_coding
description:
  TIGR00730 family protein; PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein, TIGR00730 family protein; Belongs to the LOG family.


ensembl_gene_id: PMI41_04568
symbol: EJM98806.1
gene_biotype: protein_coding
description:
  PFAM: HMGL-like, LeuA allosteric (dimerization) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: PMI41_04570
symbol: cysS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (C) catalytic domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PMI41_04575
symbol: EJM98813.1
gene_biotype: protein_coding
description:
  TIGR02301 family protein; PFAM: Protein of unknown function (DUF2385); TIGRFAM: TIGR02301 family protein.


ensembl_gene_id: PMI41_04579
symbol: EJM98817.1
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase specialized sigma subunit, sigma24; PFAM: Sigma-70, region 4, Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: PMI41_04584
symbol: EJM98822.1
gene_biotype: protein_coding
description:
  Folate-binding protein YgfZ; PFAM: Glycine cleavage T-protein C-terminal barrel domain, Aminomethyltransferase folate-binding domain; TIGRFAM: folate-binding protein YgfZ; Belongs to the GcvT family.


ensembl_gene_id: PMI41_04589
symbol: EJM98827.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: EAL domain, GGDEF domain, Bacterial signalling protein N terminal repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI41_04598
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS protein; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought [...]


ensembl_gene_id: PMI41_04599
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: PMI41_04602
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: PMI41_04603
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: PMI41_04604
symbol: EJM98842.1
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain, Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.


ensembl_gene_id: PMI41_04606
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: PMI41_04608
symbol: EJM98846.1
gene_biotype: protein_coding
description:
  Endoglucanase; PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: PMI41_04609
symbol: EJM98847.1
gene_biotype: protein_coding
description:
  Phosphotransferase system, galactitol-specific IIB component; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit.


ensembl_gene_id: PMI41_04611
symbol: EJM98849.1
gene_biotype: protein_coding
description:
  PFAM: PTS system sugar-specific permease component; TIGRFAM: PTS system, galactitol-specific IIC component.


ensembl_gene_id: PMI41_04614
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: PMI41_04615
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: PMI41_04617
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: PMI41_04619
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: PMI41_04620
symbol: EJM98858.1
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase, RelA/SpoT family; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: PMI41_04621
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: PMI41_04624
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: PMI41_04641
symbol: EJM98879.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, GAF domain, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI41_04665
symbol: EJM98902.1
gene_biotype: protein_coding
description:
  PLP-dependent enzyme, histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase.


ensembl_gene_id: PMI41_04667
symbol: EJM98904.1
gene_biotype: protein_coding
description:
  Putative hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold, Epoxide hydrolase N terminus.


ensembl_gene_id: PMI41_04682
symbol: amn
gene_biotype: protein_coding
description:
  AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.


ensembl_gene_id: PMI41_04694
symbol: EJM98931.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF3458), Peptidase family M1; TIGRFAM: aminopeptidase N, Escherichia coli type.


ensembl_gene_id: PMI41_04696
symbol: glnE
gene_biotype: protein_coding
description:
  Glutamine synthetase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transducti [...]


ensembl_gene_id: PMI41_04702
symbol: EJM98419.1
gene_biotype: protein_coding
description:
  K+-transporting ATPase, B subunit; PFAM: E1-E2 ATPase, haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC, K+-transporting ATPase, B subunit; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: PMI41_04703
symbol: kdpA
gene_biotype: protein_coding
description:
  K+-transporting ATPase, KdpA; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: PMI41_04708
symbol: EJM98425.1
gene_biotype: protein_coding
description:
  6-phosphogluconolactonase/glucosamine-6- phosphate isomerase/deaminase; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.


ensembl_gene_id: PMI41_04712
symbol: EJM98429.1
gene_biotype: protein_coding
description:
  ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter.


ensembl_gene_id: PMI41_04713
symbol: EJM98430.1
gene_biotype: protein_coding
description:
  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; PFAM: ABC transporter, Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PMI41_04719
symbol: EJM98436.1
gene_biotype: protein_coding
description:
  Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: Aminotransferase class-V.


ensembl_gene_id: PMI41_04720
symbol: EJM98437.1
gene_biotype: protein_coding
description:
  Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Bacterial transglutaminase-like N-terminal region, Transglutaminase-like superfamily.


ensembl_gene_id: PMI41_04721
symbol: EJM98438.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Bacterial domain of unknown function (DUF403), Domain of unknown function (DUF404), Domain of unknown function (DUF407).


ensembl_gene_id: PMI41_04722
symbol: EJM98439.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Bacterial transglutaminase-like N-terminal region, Transglutaminase-like superfamily, Putative amidoligase enzyme (DUF2126).


ensembl_gene_id: PMI41_04729
symbol: cysQ
gene_biotype: protein_coding
description:
  3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.


ensembl_gene_id: PMI41_04730
symbol: cysC
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: PMI41_04731
symbol: cysD
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: sulfate adenylyltransferase, small subunit.


ensembl_gene_id: PMI41_04737
symbol: EJM98452.1
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; PFAM: Glycosyl transferase family 4.


ensembl_gene_id: PMI41_04740
symbol: EJM98455.1
gene_biotype: protein_coding
description:
  Hydroxyisourate hydrolase; PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.


ensembl_gene_id: PMI41_04742
symbol: EJM98457.1
gene_biotype: protein_coding
description:
  PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit.


ensembl_gene_id: PMI41_04743
symbol: EJM98458.1
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, small subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain, FAD binding domain in molybdopterin dehydrogenase, [2Fe-2S] binding domain, CO dehydrogenase flavoprotein C-terminal domain; TIGRFAM: xanthine dehydrogenase, small subunit.


ensembl_gene_id: PMI41_04745
symbol: kptA
gene_biotype: protein_coding
description:
  RNA:NAD 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.


ensembl_gene_id: PMI41_04746
symbol: allA
gene_biotype: protein_coding
description:
  Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.


ensembl_gene_id: PMI41_04758
symbol: EJM98473.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: Tetracyclin repressor, C-terminal all-alpha domain, Bacterial regulatory proteins, tetR family.


ensembl_gene_id: PMI41_04763
symbol: EJM98478.1
gene_biotype: protein_coding
description:
  Pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, mobile domain, PEP-utilising enzyme, TIM barrel domain, Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PMI41_04764
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: PMI41_04775
symbol: EJM98490.1
gene_biotype: protein_coding
description:
  Putative Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain, Insulinase (Peptidase family M16); Belongs to the peptidase M16 family.


ensembl_gene_id: PMI41_04777
symbol: EJM98492.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain, GGDEF domain, 7TMR-DISM extracellular 2, PAS fold; TIGRFAM: PAS domain S-box, diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: PMI41_04778
symbol: EJM98493.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: Uncharacterized ACR, COG1678; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: PMI41_04780
symbol: EJM98495.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.


ensembl_gene_id: PMI41_04782
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase, Neisseria type; PFAM: Phosphotransferase enzyme family; TIGRFAM: homoserine kinase, Neisseria type; Belongs to the pseudomonas-type ThrB family.


ensembl_gene_id: PMI41_04783
symbol: ispH
gene_biotype: protein_coding
description:
  (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: PMI41_04788
symbol: ctaG
gene_biotype: protein_coding
description:
  Cytochrome oxidase assembly factor; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.


ensembl_gene_id: PMI41_04789
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: PMI41_04790
symbol: EJM98505.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: PMI41_04791
symbol: EJM98506.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: PMI41_04794
symbol: EJM98035.1
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).


ensembl_gene_id: PMI41_04795
symbol: EJM98036.1
gene_biotype: protein_coding
description:
  PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain; Belongs to the CinA family.


ensembl_gene_id: PMI41_04797
symbol: EJM98038.1
gene_biotype: protein_coding
description:
  Oligoketide cyclase/lipid transport protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.


ensembl_gene_id: PMI41_04798
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoate synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: PMI41_04803
symbol: EJM98044.1
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: PMI41_04804
symbol: EJM98045.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.


ensembl_gene_id: PMI41_04805
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: PMI41_04807
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: PMI41_04809
symbol: kdsA
gene_biotype: protein_coding
description:
  PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; Belongs to the KdsA family.


ensembl_gene_id: PMI41_04811
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: PMI41_04813
symbol: EJM98054.1
gene_biotype: protein_coding
description:
  Protein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: PMI41_04814
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: PMI41_04816
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: PMI41_04818
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaC; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: PMI41_04819
symbol: EJM98060.1
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis enzyme; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: PMI41_04827
symbol: lexA
gene_biotype: protein_coding
description:
  SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: PMI41_04830
symbol: EJM98071.1
gene_biotype: protein_coding
description:
  PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); Belongs to the citrate synthase family.


ensembl_gene_id: PMI41_04831
symbol: EJM98072.1
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: PMI41_04833
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: PMI41_04834
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: PMI41_04835
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: PMI41_04836
symbol: bamA
gene_biotype: protein_coding
description:
  Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: PMI41_04838
symbol: EJM98079.1
gene_biotype: protein_coding
description:
  Putative membrane-associated Zn-dependent protease; PFAM: Peptidase family M50; TIGRFAM: RIP metalloprotease RseP.


ensembl_gene_id: PMI41_04840
symbol: EJM98081.1
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: PMI41_04841
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: PMI41_04843
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: PMI41_04844
symbol: rpsB
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: PMI41_04852
symbol: EJM98093.1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: AAA domain (Cdc48 subfamily), Clp amino terminal domain, C-terminal, D2-small domain, of ClpB protein, ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PMI41_04853
symbol: clpS
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: PMI41_04858
symbol: EJM98099.1
gene_biotype: protein_coding
description:
  PFAM: Serine dehydratase alpha chain, Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form.


ensembl_gene_id: PMI41_04865
symbol: EJM98106.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase.


ensembl_gene_id: PMI41_04866
symbol: EJM98107.1
gene_biotype: protein_coding
description:
  PFAM: chorismate binding enzyme, Anthranilate synthase component I, N terminal region; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade.


ensembl_gene_id: PMI41_04872
symbol: EJM98113.1
gene_biotype: protein_coding
description:
  Putative oxidoreductase, LLM family; PFAM: Luciferase-like monooxygenase; TIGRFAM: probable oxidoreductase, LLM family.


ensembl_gene_id: PMI41_04874
symbol: trmJ
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: PMI41_04875
symbol: EJM98116.1
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, eukaryotic type; Belongs to the isocitrate and isopropylmalate dehydrogenases family.


ensembl_gene_id: PMI41_04876
symbol: EJM98117.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with HTH domain and aminotransferase domain containing protein; PFAM: Aminotransferase class I and II.


ensembl_gene_id: PMI41_04877
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: PMI41_04878
symbol: recA
gene_biotype: protein_coding
description:
  Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: PMI41_04880
symbol: psuG
gene_biotype: protein_coding
description:
  Putative enzyme involved in pigment biosynthesis; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.


ensembl_gene_id: PMI41_04884
symbol: EJM98125.1
gene_biotype: protein_coding
description:
  Putative enzyme involved in biosynthesis of extracellular polysaccharides; PFAM: Antibiotic biosynthesis monooxygenase.


ensembl_gene_id: PMI41_04886
symbol: EJM98127.1
gene_biotype: protein_coding
description:
  PFAM: Aminomethyltransferase folate-binding domain, Glycine cleavage T-protein C-terminal barrel domain, FAD dependent oxidoreductase; TIGRFAM: glycine cleavage system T protein; overlaps another CDS with the same product name; Belongs to the GcvT family.


ensembl_gene_id: PMI41_04887
symbol: EJM98128.1
gene_biotype: protein_coding
description:
  PFAM: Aminomethyltransferase folate-binding domain, Glycine cleavage T-protein C-terminal barrel domain, FAD dependent oxidoreductase; overlaps another CDS with the same product name; Belongs to the GcvT family.


ensembl_gene_id: PMI41_04893
symbol: lcdH
gene_biotype: protein_coding
description:
  3-hydroxyacyl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.


ensembl_gene_id: PMI41_04901
symbol: EJM98142.1
gene_biotype: protein_coding
description:
  ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.


ensembl_gene_id: PMI41_04902
symbol: EJM98143.1
gene_biotype: protein_coding
description:
  Putative hydrolase, CocE/NonD family; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain, X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family.


ensembl_gene_id: PMI41_04913
symbol: EJM98154.1
gene_biotype: protein_coding
description:
  PFAM: Pyridine nucleotide-disulphide oxidoreductase, NADH:flavin oxidoreductase / NADH oxidase family.


ensembl_gene_id: PMI41_04924
symbol: EJM97794.1
gene_biotype: protein_coding
description:
  Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: PMI41_04925
symbol: EJM97795.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain, PAS fold.


ensembl_gene_id: PMI41_04926
symbol: ntrC
gene_biotype: protein_coding
description:
  Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: PMI41_04929
symbol: EJM97799.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; PFAM: HAMP domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: PMI41_04934
symbol: EJM97804.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PFAM: Aminotransferase class IV; TIGRFAM: D-amino acid aminotransferase.


ensembl_gene_id: PMI41_04935
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: PMI41_04936
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: PMI41_04937
symbol: EJM97807.1
gene_biotype: protein_coding
description:
  MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein.


ensembl_gene_id: PMI41_04938
symbol: EJM97808.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized protein conserved in bacteria (DUF2094); TIGRFAM: type VI secretion-associated protein, BMA_A0400 family.


ensembl_gene_id: PMI41_04939
symbol: EJM97809.1
gene_biotype: protein_coding
description:
  Type VI secretion protein IcmF; PFAM: Protein of unknown function (DUF1215), Intracellular multiplication and human macrophage-killing; TIGRFAM: type VI secretion protein IcmF.


ensembl_gene_id: PMI41_04940
symbol: EJM97810.1
gene_biotype: protein_coding
description:
  PFAM: OmpA family, Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family, type VI secretion system OmpA/MotB family protein.


ensembl_gene_id: PMI41_04941
symbol: EJM97811.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family.


ensembl_gene_id: PMI41_04951
symbol: EJM97821.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial protein of unknown function (DUF879); TIGRFAM: type VI secretion protein, VC_A0110 family.


ensembl_gene_id: PMI41_04953
symbol: EJM97823.1
gene_biotype: protein_coding
description:
  Protein of avirulence locus involved in temperature-dependent protein secretion; PFAM: ImpE protein.


ensembl_gene_id: PMI41_04954
symbol: EJM97824.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family.


ensembl_gene_id: PMI41_04957
symbol: EJM97827.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: ImpA-related N-terminal; TIGRFAM: type VI secretion-associated protein, ImpA family.


ensembl_gene_id: PMI41_04958
symbol: EJM97828.1
gene_biotype: protein_coding
description:
  Type VI secretion ATPase, ClpV1 family; PFAM: AAA domain (Cdc48 subfamily), Clp amino terminal domain, C-terminal, D2-small domain, of ClpB protein, ATPase family associated with various cellular activities (AAA); TIGRFAM: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PMI41_04959
symbol: EJM97829.1
gene_biotype: protein_coding
description:
  Hemolysin-coregulated protein (uncharacterized); PFAM: Protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family.


ensembl_gene_id: PMI41_04963
symbol: EJM97833.1
gene_biotype: protein_coding
description:
  ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PMI41_04970
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.


ensembl_gene_id: PMI41_04972
symbol: EJM97842.1
gene_biotype: protein_coding
description:
  DNA polymerase III, gamma/tau subunit; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, delta' subunit.


ensembl_gene_id: PMI41_04973
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: PMI41_04974
symbol: EJM97844.1
gene_biotype: protein_coding
description:
  PFAM: D-alanyl-D-alanine carboxypeptidase, Penicillin-binding protein 5, C-terminal domain; Belongs to the peptidase S11 family.


ensembl_gene_id: PMI41_04975
symbol: rlpA-2
gene_biotype: protein_coding
description:
  Lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: PMI41_04984
symbol: EJM97853.1
gene_biotype: protein_coding
description:
  ABC-type transport system, involved in lipoprotein release, permease component; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.


