# geneInfo

ensembl_gene_id: CTM_00015
symbol: birA
gene_biotype: protein_coding
description:
  birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.


ensembl_gene_id: CTM_00075
symbol: CTM_00075
gene_biotype: protein_coding
description:
  PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein; COG3322 Predicted periplasmic ligand-binding sensor domain.


ensembl_gene_id: CTM_00085
symbol: CTM_00085
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_00110
symbol: CTM_00110
gene_biotype: protein_coding
description:
  D-isomer-specific 2-hydroxyacid dehydrogenase; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: CTM_00180
symbol: CTM_00180
gene_biotype: protein_coding
description:
  methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: CTM_00195
symbol: CTM_00195
gene_biotype: protein_coding
description:
  COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: CTM_00210
symbol: CTM_00210
gene_biotype: protein_coding
description:
  Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; COG1012 NAD-dependent aldehyde dehydrogenases; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.


ensembl_gene_id: CTM_00235
symbol: speE
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.


ensembl_gene_id: CTM_00240
symbol: CTM_00240
gene_biotype: protein_coding
description:
  COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: CTM_00245
symbol: spoIIAB
gene_biotype: protein_coding
description:
  Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.


ensembl_gene_id: CTM_00250
symbol: CTM_00250
gene_biotype: protein_coding
description:
  Sporulation sigma factor SigF; COG1191 DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family.


ensembl_gene_id: CTM_00270
symbol: CTM_00270
gene_biotype: protein_coding
description:
  Multimodular transpeptidase-transglycosylase; COG0744 Membrane carboxypeptidase (penicillin-binding protein).


ensembl_gene_id: CTM_00280
symbol: CTM_00280
gene_biotype: protein_coding
description:
  COG0634 Hypoxanthine-guanine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: CTM_00290
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.


ensembl_gene_id: CTM_00295
symbol: mtaD
gene_biotype: protein_coding
description:
  Atrazine chlorohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.


ensembl_gene_id: CTM_00305
symbol: CTM_00305
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.


ensembl_gene_id: CTM_00320
symbol: CTM_00320
gene_biotype: protein_coding
description:
  COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.


ensembl_gene_id: CTM_00355
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: CTM_00360
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: CTM_00365
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: CTM_00370
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: CTM_00395
symbol: secD
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: CTM_00400
symbol: secF
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: CTM_00410
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: CTM_00415
symbol: CTM_00415
gene_biotype: protein_coding
description:
  GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: CTM_00420
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: CTM_00435
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: CTM_00450
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: CTM_00480
symbol: CTM_00480
gene_biotype: protein_coding
description:
  COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_00555
symbol: CTM_00555
gene_biotype: protein_coding
description:
  COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; overlaps another CDS with the same product name.


ensembl_gene_id: CTM_00560
symbol: CTM_00560
gene_biotype: protein_coding
description:
  COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; overlaps another CDS with the same product name.


ensembl_gene_id: CTM_00595
symbol: rnj
gene_biotype: protein_coding
description:
  Beta-lactamase domain-containing protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: CTM_00680
symbol: CTM_00680
gene_biotype: protein_coding
description:
  TrkA-N domain-containing protein; COG0569 K+ transport systems, NAD-binding component; overlaps another CDS with the same product name.


ensembl_gene_id: CTM_00700
symbol: polC
gene_biotype: protein_coding
description:
  DNA polymerase III subunit alpha; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: CTM_00720
symbol: CTM_00720
gene_biotype: protein_coding
description:
  Solo B3/4 domain of Phe-aaRS-beta domain-containing protein; COG3382 Uncharacterized conserved protein; OB-fold DNA/RNA-binding.


ensembl_gene_id: CTM_00830
symbol: CTM_00830
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: CTM_00860
symbol: CTM_00860
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein; COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase.


ensembl_gene_id: CTM_00870
symbol: CTM_00870
gene_biotype: protein_coding
description:
  GNAT family acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.


ensembl_gene_id: CTM_00875
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: CTM_00880
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.


ensembl_gene_id: CTM_00885
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: CTM_00890
symbol: CTM_00890
gene_biotype: protein_coding
description:
  COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).


ensembl_gene_id: CTM_00895
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.


ensembl_gene_id: CTM_00910
symbol: CTM_00910
gene_biotype: protein_coding
description:
  Branched chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids.


ensembl_gene_id: CTM_00915
symbol: CTM_00915
gene_biotype: protein_coding
description:
  Bile acid-inducible operon protein F; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.


ensembl_gene_id: CTM_00955
symbol: CTM_00955
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain.


ensembl_gene_id: CTM_00970
symbol: CTM_00970
gene_biotype: protein_coding
description:
  Maf-like protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: CTM_01000
symbol: minC
gene_biotype: protein_coding
description:
  Septum formation inhibitor; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: CTM_01010
symbol: minE
gene_biotype: protein_coding
description:
  Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.


ensembl_gene_id: CTM_01015
symbol: rodA
gene_biotype: protein_coding
description:
  Rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: CTM_01050
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: CTM_01065
symbol: CTM_01065
gene_biotype: protein_coding
description:
  Hypothetical protein; COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism.


ensembl_gene_id: CTM_01070
symbol: obgE
gene_biotype: protein_coding
description:
  GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: CTM_01080
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: CTM_01085
symbol: CTM_01085
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism.


ensembl_gene_id: CTM_01095
symbol: CTM_01095
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: CTM_01115
symbol: selA
gene_biotype: protein_coding
description:
  Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.


ensembl_gene_id: CTM_01140
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: CTM_01150
symbol: CTM_01150
gene_biotype: protein_coding
description:
  COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.


ensembl_gene_id: CTM_01165
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: CTM_01180
symbol: CTM_01180
gene_biotype: protein_coding
description:
  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: CTM_01215
symbol: gpr
gene_biotype: protein_coding
description:
  Germination protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.


ensembl_gene_id: CTM_01230
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: CTM_01235
symbol: CTM_01235
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: CTM_01240
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: CTM_01245
symbol: grpE
gene_biotype: protein_coding
description:
  Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...]


ensembl_gene_id: CTM_01255
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: CTM_01260
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: CTM_01265
symbol: CTM_01265
gene_biotype: protein_coding
description:
  16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: CTM_01275
symbol: CTM_01275
gene_biotype: protein_coding
description:
  HIT family protein; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.


ensembl_gene_id: CTM_01305
symbol: ybeY
gene_biotype: protein_coding
description:
  Metal-binding heat shock protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: CTM_01315
symbol: CTM_01315
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: CTM_01320
symbol: era
gene_biotype: protein_coding
description:
  GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: CTM_01340
symbol: CTM_01340
gene_biotype: protein_coding
description:
  Pyruvate phosphate dikinase; COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: CTM_01360
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: CTM_01365
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: CTM_01465
symbol: CTM_01465
gene_biotype: protein_coding
description:
  Sensory box-containing [Fe] hydrogenase; COG4624 Iron only hydrogenase large subunit, C-terminal domain.


ensembl_gene_id: CTM_01480
symbol: CTM_01480
gene_biotype: protein_coding
description:
  Putative [Fe] hydrogenase, electron-transfer subunit; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.


ensembl_gene_id: CTM_01524
symbol: CTM_01524
gene_biotype: protein_coding
description:
  Putative N-acetylmuramoyl-L-alanine amidase; COG5479 Uncharacterized protein potentially involved in peptidoglycan biosynthesis.


ensembl_gene_id: CTM_01564
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: CTM_01569
symbol: CTM_01569
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.


ensembl_gene_id: CTM_01589
symbol: CTM_01589
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.


ensembl_gene_id: CTM_01634
symbol: CTM_01634
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; Belongs to the TtcA family.


ensembl_gene_id: CTM_01639
symbol: groEL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: CTM_01644
symbol: groES
gene_biotype: protein_coding
description:
  Co-chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: CTM_01664
symbol: CTM_01664
gene_biotype: protein_coding
description:
  Dihydropyrimidine dehydrogenase subunit A; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.


ensembl_gene_id: CTM_01669
symbol: CTM_01669
gene_biotype: protein_coding
description:
  ferredoxin-NADP(+) reductase subunit alpha; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.


ensembl_gene_id: CTM_01764
symbol: CTM_01764
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit.


ensembl_gene_id: CTM_01819
symbol: CTM_01819
gene_biotype: protein_coding
description:
  Two component transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_01829
symbol: CTM_01829
gene_biotype: protein_coding
description:
  Glycosyltransferase; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.


ensembl_gene_id: CTM_01849
symbol: CTM_01849
gene_biotype: protein_coding
description:
  Protease htpX-like protein; COG0501 Zn-dependent protease with chaperone function; overlaps another CDS with the same product name.


ensembl_gene_id: CTM_01859
symbol: CTM_01859
gene_biotype: protein_coding
description:
  GCN5-like N-acetyltransferase; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: CTM_01869
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: CTM_01934
symbol: amj
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: CTM_01939
symbol: CTM_01939
gene_biotype: protein_coding
description:
  Winged helix family two component transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_01944
symbol: CTM_01944
gene_biotype: protein_coding
description:
  Nucleoside recognition domain-containing protein; COG3314 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: CTM_01969
symbol: CTM_01969
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: CTM_01989
symbol: CTM_01989
gene_biotype: protein_coding
description:
  Threonyl/alanyl tRNA synthetase SAD; COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain.


ensembl_gene_id: CTM_02009
symbol: CTM_02009
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase family protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.


ensembl_gene_id: CTM_02014
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).


ensembl_gene_id: CTM_02039
symbol: CTM_02039
gene_biotype: protein_coding
description:
  L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: CTM_02044
symbol: CTM_02044
gene_biotype: protein_coding
description:
  Transcriptional regulator, pyruvate dehydrogenase complex repressor; COG2186 Transcriptional regulators.


ensembl_gene_id: CTM_02069
symbol: CTM_02069
gene_biotype: protein_coding
description:
  Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: CTM_02079
symbol: CTM_02079
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: CTM_02134
symbol: CTM_02134
gene_biotype: protein_coding
description:
  Nitrogenase iron protein; COG1348 Nitrogenase subunit NifH (ATPase); Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: CTM_02139
symbol: CTM_02139
gene_biotype: protein_coding
description:
  Ferrichrome transport ATP-binding protein FhuC; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.


ensembl_gene_id: CTM_02144
symbol: CTM_02144
gene_biotype: protein_coding
description:
  Ferrichrome ABC transporter permease FhuG; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: CTM_02149
symbol: CTM_02149
gene_biotype: protein_coding
description:
  Ferrichrome ABC transporter permease FhuG; COG0609 ABC-type Fe3+-siderophore transport system, permease component.


ensembl_gene_id: CTM_02154
symbol: CTM_02154
gene_biotype: protein_coding
description:
  Ferrichrome ABC transporter permease FhuB; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: CTM_02159
symbol: CTM_02159
gene_biotype: protein_coding
description:
  Ferrichrome ABC transporter ferrichrome-binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.


ensembl_gene_id: CTM_02209
symbol: hutG
gene_biotype: protein_coding
description:
  Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.


ensembl_gene_id: CTM_02234
symbol: galK
gene_biotype: protein_coding
description:
  Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: CTM_02249
symbol: CTM_02249
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.


ensembl_gene_id: CTM_02284
symbol: CTM_02284
gene_biotype: protein_coding
description:
  PTS system, glucose-like IIB component; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.


ensembl_gene_id: CTM_02289
symbol: CTM_02289
gene_biotype: protein_coding
description:
  PTS system sucrose-specific transporter subunit II A; COG2190 Phosphotransferase system IIA components.


ensembl_gene_id: CTM_02299
symbol: CTM_02299
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: CTM_02319
symbol: CTM_02319
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.


ensembl_gene_id: CTM_02329
symbol: CTM_02329
gene_biotype: protein_coding
description:
  COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.


ensembl_gene_id: CTM_02339
symbol: CTM_02339
gene_biotype: protein_coding
description:
  COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: CTM_02354
symbol: CTM_02354
gene_biotype: protein_coding
description:
  PTS system mannnose-specific family transporter subunit IIA; COG3412 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: CTM_02359
symbol: CTM_02359
gene_biotype: protein_coding
description:
  Glycerol uptake operon antiterminator regulatory protein; COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding).


ensembl_gene_id: CTM_02374
symbol: CTM_02374
gene_biotype: protein_coding
description:
  4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; COG0693 Putative intracellular protease/amidase.


ensembl_gene_id: CTM_02414
symbol: thiM
gene_biotype: protein_coding
description:
  Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family.


ensembl_gene_id: CTM_02419
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: CTM_02424
symbol: CTM_02424
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiF; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.


ensembl_gene_id: CTM_02479
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: CTM_02489
symbol: CTM_02489
gene_biotype: protein_coding
description:
  COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.


ensembl_gene_id: CTM_02529
symbol: cheD
gene_biotype: protein_coding
description:
  Chemoreceptor glutamine deamidase CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: CTM_02534
symbol: cheB
gene_biotype: protein_coding
description:
  Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: CTM_02594
symbol: fliW
gene_biotype: protein_coding
description:
  Flagellar assembly protein FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.


ensembl_gene_id: CTM_02599
symbol: csrA
gene_biotype: protein_coding
description:
  Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.


ensembl_gene_id: CTM_02619
symbol: CTM_02619
gene_biotype: protein_coding
description:
  Flagellar cap protein fliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: CTM_02689
symbol: hypA
gene_biotype: protein_coding
description:
  Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: CTM_02694
symbol: CTM_02694
gene_biotype: protein_coding
description:
  Hydrogenase nickel incorporation protein HypB; COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase.


ensembl_gene_id: CTM_02709
symbol: CTM_02709
gene_biotype: protein_coding
description:
  Monovalent cation/proton antiporter subunit MnhG/PhaG; COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit.


ensembl_gene_id: CTM_02744
symbol: CTM_02744
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin iron-sulfur binding domain protein; COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).


ensembl_gene_id: CTM_02749
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: CTM_02779
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: CTM_02794
symbol: CTM_02794
gene_biotype: protein_coding
description:
  Spore coat polysaccharide biosynthesis protein spsC; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: CTM_02799
symbol: CTM_02799
gene_biotype: protein_coding
description:
  Pleiotropic regulatory protein; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: CTM_02804
symbol: mraZ
gene_biotype: protein_coding
description:
  Cell division protein MraZ; COG2001 Uncharacterized protein conserved in bacteria; Belongs to the MraZ family.


ensembl_gene_id: CTM_02809
symbol: rsmH
gene_biotype: protein_coding
description:
  16S rRNA m(4)C1402 methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: CTM_02824
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: CTM_02829
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: CTM_02834
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: CTM_02864
symbol: CTM_02864
gene_biotype: protein_coding
description:
  Proline synthetase associated protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: CTM_02869
symbol: sepF
gene_biotype: protein_coding
description:
  Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: CTM_02889
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: CTM_02894
symbol: CTM_02894
gene_biotype: protein_coding
description:
  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.


ensembl_gene_id: CTM_02909
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: CTM_02919
symbol: pyrR
gene_biotype: protein_coding
description:
  Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.


ensembl_gene_id: CTM_02974
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: CTM_02984
symbol: CTM_02984
gene_biotype: protein_coding
description:
  General secretion pathway protein E; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.


ensembl_gene_id: CTM_03029
symbol: CTM_03029
gene_biotype: protein_coding
description:
  CoA-disulfide reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: CTM_03044
symbol: CTM_03044
gene_biotype: protein_coding
description:
  Flagellar biosynthesis related protein; COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB.


ensembl_gene_id: CTM_03054
symbol: CTM_03054
gene_biotype: protein_coding
description:
  Riboflavin transporter; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.


ensembl_gene_id: CTM_03069
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: CTM_03074
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: CTM_03084
symbol: hpf
gene_biotype: protein_coding
description:
  SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: CTM_03099
symbol: recD2
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V subunit alpha; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.


ensembl_gene_id: CTM_03104
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: CTM_03139
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: CTM_03154
symbol: atpD
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: CTM_03159
symbol: atpG
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: CTM_03164
symbol: atpA
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: CTM_03169
symbol: atpH
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: CTM_03174
symbol: atpF
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: CTM_03179
symbol: atpE
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: CTM_03184
symbol: atpB
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: CTM_03194
symbol: CTM_03194
gene_biotype: protein_coding
description:
  Acyltransferase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: CTM_03199
symbol: CTM_03199
gene_biotype: protein_coding
description:
  COG0381 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: CTM_03204
symbol: CTM_03204
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase.


ensembl_gene_id: CTM_03214
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: CTM_03224
symbol: CTM_03224
gene_biotype: protein_coding
description:
  COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: CTM_03229
symbol: CTM_03229
gene_biotype: protein_coding
description:
  Translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: CTM_03244
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: CTM_03249
symbol: prmC
gene_biotype: protein_coding
description:
  N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: CTM_03274
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: CTM_03284
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: CTM_03299
symbol: CTM_03299
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain.


ensembl_gene_id: CTM_03304
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanyl-alanine synthetase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: CTM_03314
symbol: CTM_03314
gene_biotype: protein_coding
description:
  1,2-diacylglycerol 3-glucosyltransferase; COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase.


ensembl_gene_id: CTM_03344
symbol: ipk
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: CTM_03349
symbol: CTM_03349
gene_biotype: protein_coding
description:
  Cyanophycin synthetase; COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; Belongs to the MurCDEF family.


ensembl_gene_id: CTM_03404
symbol: CTM_03404
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: CTM_03424
symbol: larC
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family.


ensembl_gene_id: CTM_03444
symbol: CTM_03444
gene_biotype: protein_coding
description:
  3-hydroxybutyryl-CoA dehydratase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: CTM_03449
symbol: rex
gene_biotype: protein_coding
description:
  Redox-sensing transcriptional repressor Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: CTM_03464
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: CTM_03474
symbol: CTM_03474
gene_biotype: protein_coding
description:
  Oligopeptide transport ATP-binding protein AppF; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_03479
symbol: CTM_03479
gene_biotype: protein_coding
description:
  Oligopeptide transport ATP-binding protein AppD; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_03499
symbol: tsaD
gene_biotype: protein_coding
description:
  UGMP family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: CTM_03529
symbol: CTM_03529
gene_biotype: protein_coding
description:
  Putative transposase for insertion sequence element IS1353; COG2801 Transposase and inactivated derivatives.


ensembl_gene_id: CTM_03559
symbol: CTM_03559
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin.


ensembl_gene_id: CTM_03574
symbol: CTM_03574
gene_biotype: protein_coding
description:
  Glycoprotease family protein; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.


ensembl_gene_id: CTM_03584
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: CTM_03599
symbol: CTM_03599
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen.


ensembl_gene_id: CTM_03690
symbol: CTM_03690
gene_biotype: protein_coding
description:
  Copper amine oxidase-like domain-containing protein; COG5279 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain.


ensembl_gene_id: CTM_03770
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25/general stress protein Ctc; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: CTM_03795
symbol: CTM_03795
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_03830
symbol: CTM_03830
gene_biotype: protein_coding
description:
  Triacylglycerol lipase; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.


ensembl_gene_id: CTM_03870
symbol: CTM_03870
gene_biotype: protein_coding
description:
  Lipoprotein-releasing system ATP-binding protein LolD; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: CTM_03895
symbol: CTM_03895
gene_biotype: protein_coding
description:
  ABC transporter multidrug-family ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: CTM_03965
symbol: CTM_03965
gene_biotype: protein_coding
description:
  COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: CTM_03980
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.


ensembl_gene_id: CTM_03990
symbol: CTM_03990
gene_biotype: protein_coding
description:
  CBS domain-containing cytosolic protein; COG4109 Predicted transcriptional regulator containing CBS domains.


ensembl_gene_id: CTM_04000
symbol: CTM_04000
gene_biotype: protein_coding
description:
  Transporter; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: CTM_04015
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: CTM_04045
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: CTM_04050
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: CTM_04055
symbol: CTM_04055
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.


ensembl_gene_id: CTM_04065
symbol: CTM_04065
gene_biotype: protein_coding
description:
  Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: CTM_04070
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: CTM_04100
symbol: CTM_04100
gene_biotype: protein_coding
description:
  COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain.


ensembl_gene_id: CTM_04105
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: CTM_04115
symbol: nnrE
gene_biotype: protein_coding
description:
  Sugar kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of  [...]


ensembl_gene_id: CTM_04120
symbol: acpS
gene_biotype: protein_coding
description:
  4'-phosphopantetheinyl transferase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: CTM_04200
symbol: CTM_04200
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; COG0300 Short-chain dehydrogenases of various substrate specificities; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: CTM_04205
symbol: CTM_04205
gene_biotype: protein_coding
description:
  Crp/Fnr family transcriptional regulator; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: CTM_04230
symbol: CTM_04230
gene_biotype: protein_coding
description:
  COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.


ensembl_gene_id: CTM_04245
symbol: CTM_04245
gene_biotype: protein_coding
description:
  Restriction modification system DNA specificity domain-containing protein; COG0732 Restriction endonuclease S subunits.


ensembl_gene_id: CTM_04275
symbol: CTM_04275
gene_biotype: protein_coding
description:
  Peptide ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: CTM_04290
symbol: CTM_04290
gene_biotype: protein_coding
description:
  Bacitracin transport ATP-binding protein BcrA; COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: CTM_04335
symbol: CTM_04335
gene_biotype: protein_coding
description:
  COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: CTM_04355
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl carrier protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: CTM_04375
symbol: CTM_04375
gene_biotype: protein_coding
description:
  3-oxoacyl-ACP reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: CTM_04380
symbol: CTM_04380
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl carrier protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: CTM_04385
symbol: CTM_04385
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: CTM_04390
symbol: fabZ
gene_biotype: protein_coding
description:
  (3R)-hydroxymyristoyl-ACP dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: CTM_04395
symbol: CTM_04395
gene_biotype: protein_coding
description:
  Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: CTM_04400
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase carboxyl transferase subunit beta/alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: CTM_04405
symbol: CTM_04405
gene_biotype: protein_coding
description:
  Putative LysR family transcriptional regulator; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: CTM_04425
symbol: anmK
gene_biotype: protein_coding
description:
  anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: CTM_04430
symbol: CTM_04430
gene_biotype: protein_coding
description:
  Family 1 extracellular solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: CTM_04445
symbol: CTM_04445
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: CTM_04450
symbol: CTM_04450
gene_biotype: protein_coding
description:
  ABC transporter-like protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_04535
symbol: CTM_04535
gene_biotype: protein_coding
description:
  NLPA lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: CTM_04540
symbol: CTM_04540
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport system inner membrane protein; COG2011 ABC-type metal ion transport system, permease component.


ensembl_gene_id: CTM_04545
symbol: metN
gene_biotype: protein_coding
description:
  ABC transporter-like protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: CTM_04550
symbol: CTM_04550
gene_biotype: protein_coding
description:
  Amidohydrolase; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; Belongs to the peptidase M20A family.


ensembl_gene_id: CTM_04560
symbol: sigI
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor SigI; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.


ensembl_gene_id: CTM_04580
symbol: CTM_04580
gene_biotype: protein_coding
description:
  Negative regulator of genetic competence clpC/mecB; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.


ensembl_gene_id: CTM_04585
symbol: CTM_04585
gene_biotype: protein_coding
description:
  Cardiolipin synthetase 2; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: CTM_04600
symbol: CTM_04600
gene_biotype: protein_coding
description:
  Endoglucanase, aminopeptidase M42 family protein; COG1363 Cellulase M and related proteins; overlaps another CDS with the same product name.


ensembl_gene_id: CTM_04633
symbol: CTM_04633
gene_biotype: protein_coding
description:
  D-galactose-binding periplasmic protein precursor; COG1879 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: CTM_04638
symbol: CTM_04638
gene_biotype: protein_coding
description:
  Galactoside transport ATP-binding protein mglA; COG1129 ABC-type sugar transport system, ATPase component.


ensembl_gene_id: CTM_04643
symbol: CTM_04643
gene_biotype: protein_coding
description:
  Beta-methylgalactoside transporter inner membrane component; COG4211 ABC-type glucose/galactose transport system, permease component.


ensembl_gene_id: CTM_04678
symbol: CTM_04678
gene_biotype: protein_coding
description:
  Glucose-1-phosphate nucleotidyltransferase; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).


ensembl_gene_id: CTM_04683
symbol: CTM_04683
gene_biotype: protein_coding
description:
  Periplasmic binding protein/LacI transcriptional regulator; COG1879 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: CTM_04688
symbol: CTM_04688
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, LytS; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.


ensembl_gene_id: CTM_04698
symbol: CTM_04698
gene_biotype: protein_coding
description:
  D-xylose-binding periplasmic protein XylF; COG4213 ABC-type xylose transport system, periplasmic component.


ensembl_gene_id: CTM_04703
symbol: xylG
gene_biotype: protein_coding
description:
  ABC transporter-like protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.


ensembl_gene_id: CTM_04708
symbol: CTM_04708
gene_biotype: protein_coding
description:
  Inner-membrane translocator; COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CTM_04738
symbol: CTM_04738
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids.


ensembl_gene_id: CTM_04748
symbol: ddl-2
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: CTM_04788
symbol: addB
gene_biotype: protein_coding
description:
  ATP-dependent nuclease subunit B; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily.


ensembl_gene_id: CTM_04838
symbol: CTM_04838
gene_biotype: protein_coding
description:
  RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: CTM_04843
symbol: CTM_04843
gene_biotype: protein_coding
description:
  COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: CTM_04853
symbol: CTM_04853
gene_biotype: protein_coding
description:
  iron(III) dicitrate-binding periplasmic protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.


ensembl_gene_id: CTM_04858
symbol: CTM_04858
gene_biotype: protein_coding
description:
  Iron ABC transporter permease; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: CTM_04863
symbol: CTM_04863
gene_biotype: protein_coding
description:
  Hemin transport system ATP-binding protein fecE; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.


ensembl_gene_id: CTM_04893
symbol: CTM_04893
gene_biotype: protein_coding
description:
  Alkaline phosphatase synthesis transcriptional regulatory proteinphop; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_04938
symbol: CTM_04938
gene_biotype: protein_coding
description:
  Carboxylesterase bioH; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: CTM_04958
symbol: CTM_04958
gene_biotype: protein_coding
description:
  O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein; COG2873 O-acetylhomoserine sulfhydrylase.


ensembl_gene_id: CTM_04963
symbol: metAA
gene_biotype: protein_coding
description:
  Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.


ensembl_gene_id: CTM_04968
symbol: nfi
gene_biotype: protein_coding
description:
  Deoxyribonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.


ensembl_gene_id: CTM_05038
symbol: CTM_05038
gene_biotype: protein_coding
description:
  Transcriptional regulator HTH-type, ArsR family protein; COG0640 Predicted transcriptional regulators.


ensembl_gene_id: CTM_05063
symbol: CTM_05063
gene_biotype: protein_coding
description:
  Regulatory protein; COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component.


ensembl_gene_id: CTM_05073
symbol: CTM_05073
gene_biotype: protein_coding
description:
  Nickel ABC transporter periplasmic nickel-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: CTM_05093
symbol: CTM_05093
gene_biotype: protein_coding
description:
  Oligopeptide transport ATP-binding protein OppD; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_05163
symbol: CTM_05163
gene_biotype: protein_coding
description:
  Transcriptional regulator, AbrB family protein; COG2002 Regulators of stationary/sporulation gene expression.


ensembl_gene_id: CTM_05188
symbol: CTM_05188
gene_biotype: protein_coding
description:
  PTS system glucose subfamily transporter subunit IIA; COG2190 Phosphotransferase system IIA components.


ensembl_gene_id: CTM_05203
symbol: murQ
gene_biotype: protein_coding
description:
  N-acetylmuramic acid-6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.


ensembl_gene_id: CTM_05213
symbol: nagB
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.


ensembl_gene_id: CTM_05248
symbol: CTM_05248
gene_biotype: protein_coding
description:
  COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: CTM_05282
symbol: CTM_05282
gene_biotype: protein_coding
description:
  dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: CTM_05307
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: CTM_05312
symbol: gatA
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: CTM_05317
symbol: gatC
gene_biotype: protein_coding
description:
  asparaginyl/glutamyl-tRNA amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: CTM_05327
symbol: ligA
gene_biotype: protein_coding
description:
  NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: CTM_05357
symbol: CTM_05357
gene_biotype: protein_coding
description:
  Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: CTM_05372
symbol: CTM_05372
gene_biotype: protein_coding
description:
  Pullulanase; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: CTM_05407
symbol: CTM_05407
gene_biotype: protein_coding
description:
  Regulatory protein VanR; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_05431
symbol: CTM_05431
gene_biotype: protein_coding
description:
  3H domain-containing protein; COG1827 Predicted small molecule binding protein (contains 3H domain).


ensembl_gene_id: CTM_05456
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: CTM_05505
symbol: hprK
gene_biotype: protein_coding
description:
  HPr kinase/phosphorylase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). The two antagonistic activities of HprK/P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon [...]


ensembl_gene_id: CTM_05510
symbol: CTM_05510
gene_biotype: protein_coding
description:
  COG0212 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: CTM_05545
symbol: rnfC
gene_biotype: protein_coding
description:
  rnfC/nqrF; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.


ensembl_gene_id: CTM_05550
symbol: rnfD
gene_biotype: protein_coding
description:
  rnfD/nqrB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.


ensembl_gene_id: CTM_05555
symbol: rnfG
gene_biotype: protein_coding
description:
  rnfG/nqrC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.


ensembl_gene_id: CTM_05560
symbol: rnfE
gene_biotype: protein_coding
description:
  Electron transport complex RsxE subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: CTM_05565
symbol: rnfA
gene_biotype: protein_coding
description:
  rnfA/nqrE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: CTM_05570
symbol: rnfB
gene_biotype: protein_coding
description:
  Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: CTM_05585
symbol: CTM_05585
gene_biotype: protein_coding
description:
  Thiamine biosynthesis lipoprotein apbE precursor; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: CTM_05605
symbol: CTM_05605
gene_biotype: protein_coding
description:
  Peptidase M56 family protein; COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component.


ensembl_gene_id: CTM_05635
symbol: CTM_05635
gene_biotype: protein_coding
description:
  Phosphohydrolase (mutT family protein); COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.


ensembl_gene_id: CTM_05680
symbol: CTM_05680
gene_biotype: protein_coding
description:
  Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: CTM_05685
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: CTM_05690
symbol: proB
gene_biotype: protein_coding
description:
  Gamma-glutamyl kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: CTM_05705
symbol: CTM_05705
gene_biotype: protein_coding
description:
  Histidinol-phosphatase; COG1387 Histidinol phosphatase and related hydrolases of the PHP family; Belongs to the PHP hydrolase family. HisK subfamily.


ensembl_gene_id: CTM_05710
symbol: CTM_05710
gene_biotype: protein_coding
description:
  COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.


ensembl_gene_id: CTM_05720
symbol: CTM_05720
gene_biotype: protein_coding
description:
  Recombination factor protein RarA; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase.


ensembl_gene_id: CTM_05730
symbol: iscS
gene_biotype: protein_coding
description:
  Cysteine desulfhydrase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.


ensembl_gene_id: CTM_05740
symbol: mnmA-2
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: CTM_05755
symbol: CTM_05755
gene_biotype: protein_coding
description:
  Lysine-arginine-ornithine-binding extracellular protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: CTM_05760
symbol: CTM_05760
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: CTM_05775
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: CTM_05785
symbol: CTM_05785
gene_biotype: protein_coding
description:
  Holliday junction resolvase-like protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: CTM_05800
symbol: rnj-2
gene_biotype: protein_coding
description:
  Zn-dependent hydrolase; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: CTM_05815
symbol: mltG
gene_biotype: protein_coding
description:
  4-amino-4-deoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: CTM_05840
symbol: CTM_05840
gene_biotype: protein_coding
description:
  Sporulation sigma factor SigK; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: CTM_05850
symbol: CTM_05850
gene_biotype: protein_coding
description:
  N-acetylglucosaminyltransferase; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.


ensembl_gene_id: CTM_05855
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: CTM_05860
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: CTM_05865
symbol: CTM_05865
gene_biotype: protein_coding
description:
  Sporulation sigma-E factor processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.


ensembl_gene_id: CTM_05870
symbol: CTM_05870
gene_biotype: protein_coding
description:
  Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: CTM_05875
symbol: CTM_05875
gene_biotype: protein_coding
description:
  Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: CTM_05885
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: CTM_05890
symbol: CTM_05890
gene_biotype: protein_coding
description:
  Protein PhoB; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_05900
symbol: CTM_05900
gene_biotype: protein_coding
description:
  Phosphate ABC transporter substrate-binding protein; COG0226 ABC-type phosphate transport system, periplasmic component.


ensembl_gene_id: CTM_05905
symbol: CTM_05905
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: CTM_05915
symbol: pstB
gene_biotype: protein_coding
description:
  ATPase component of ABC-type phosphate transport system; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: CTM_05940
symbol: der
gene_biotype: protein_coding
description:
  GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: CTM_05945
symbol: gpsA
gene_biotype: protein_coding
description:
  COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: CTM_05950
symbol: CTM_05950
gene_biotype: protein_coding
description:
  Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.


ensembl_gene_id: CTM_05995
symbol: CTM_05995
gene_biotype: protein_coding
description:
  Nickel import ABC transporter permease subunit NikB; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: CTM_06000
symbol: CTM_06000
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport system inner membrane protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: CTM_06005
symbol: CTM_06005
gene_biotype: protein_coding
description:
  Oligopeptide ABC transporter (ATP-binding protein); COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.


ensembl_gene_id: CTM_06010
symbol: CTM_06010
gene_biotype: protein_coding
description:
  ABC transporter; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.


ensembl_gene_id: CTM_06015
symbol: CTM_06015
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.


ensembl_gene_id: CTM_06107
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: CTM_06112
symbol: hslO
gene_biotype: protein_coding
description:
  Hsp33-like chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: CTM_06127
symbol: CTM_06127
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_06132
symbol: CTM_06132
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter ATP-binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_06158
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: CTM_06163
symbol: glyQS
gene_biotype: protein_coding
description:
  glycyl-tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: CTM_06173
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: CTM_06183
symbol: CTM_06183
gene_biotype: protein_coding
description:
  Nitrogen regulation protein nifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: CTM_06188
symbol: coaX
gene_biotype: protein_coding
description:
  Pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: CTM_06193
symbol: CTM_06193
gene_biotype: protein_coding
description:
  Sodium ion-translocating decarboxylase subunit beta; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).


ensembl_gene_id: CTM_06203
symbol: CTM_06203
gene_biotype: protein_coding
description:
  Sodium pump decarboxylase, gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.


ensembl_gene_id: CTM_06218
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: CTM_06228
symbol: tilS
gene_biotype: protein_coding
description:
  Cell cycle protein mesJ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: CTM_06256
symbol: CTM_06256
gene_biotype: protein_coding
description:
  Alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase; COG1454 Alcohol dehydrogenase, class IV.


ensembl_gene_id: CTM_06271
symbol: CTM_06271
gene_biotype: protein_coding
description:
  Response regulator receiver/ANTAR domain-containing protein; COG3707 Response regulator with putative antiterminator output domain.


ensembl_gene_id: CTM_06281
symbol: eutA
gene_biotype: protein_coding
description:
  Reactivating factor for ethanolamine ammonia lyase; COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition.


ensembl_gene_id: CTM_06301
symbol: CTM_06301
gene_biotype: protein_coding
description:
  PduA protein-like protein; COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein.


ensembl_gene_id: CTM_06306
symbol: CTM_06306
gene_biotype: protein_coding
description:
  Acetaldehyde dehydrogenase / alcohol dehydrogenase-like protein; COG1012 NAD-dependent aldehyde dehydrogenases.


ensembl_gene_id: CTM_06321
symbol: CTM_06321
gene_biotype: protein_coding
description:
  Propanediol utilization phosphotransacylase; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.


ensembl_gene_id: CTM_06336
symbol: CTM_06336
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein.


ensembl_gene_id: CTM_06341
symbol: CTM_06341
gene_biotype: protein_coding
description:
  Microcompartments protein; COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein.


ensembl_gene_id: CTM_06396
symbol: CTM_06396
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.


ensembl_gene_id: CTM_06441
symbol: CTM_06441
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.


ensembl_gene_id: CTM_06446
symbol: CTM_06446
gene_biotype: protein_coding
description:
  Ribokinase-like domain-containing protein; COG0524 Sugar kinases, ribokinase family; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: CTM_06491
symbol: tnaA
gene_biotype: protein_coding
description:
  tryptophanase/L-cysteine desulfhydrase, PLP-dependent; COG3033 Tryptophanase; Belongs to the beta-eliminating lyase family.


ensembl_gene_id: CTM_06516
symbol: CTM_06516
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.


ensembl_gene_id: CTM_06521
symbol: CTM_06521
gene_biotype: protein_coding
description:
  Sodium-dependent symporter family protein; COG0733 Na+-dependent transporters of the SNF family; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.


ensembl_gene_id: CTM_06551
symbol: CTM_06551
gene_biotype: protein_coding
description:
  NADH-dependent butanol dehydrogenase; COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family.


ensembl_gene_id: CTM_06561
symbol: CTM_06561
gene_biotype: protein_coding
description:
  Permease; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.


ensembl_gene_id: CTM_06566
symbol: CTM_06566
gene_biotype: protein_coding
description:
  Bacitracin ABC transporter ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: CTM_06571
symbol: metN-2
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: CTM_06581
symbol: CTM_06581
gene_biotype: protein_coding
description:
  ABC transporter substrate binding protein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: CTM_06636
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: CTM_06641
symbol: CTM_06641
gene_biotype: protein_coding
description:
  Glutamine amidotransferase of anthranilate synthase; COG0512 Anthranilate/para-aminobenzoate synthases component II.


ensembl_gene_id: CTM_06646
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: CTM_06661
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: CTM_06666
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: CTM_06761
symbol: CTM_06761
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: CTM_06776
symbol: CTM_06776
gene_biotype: protein_coding
description:
  COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: CTM_06811
symbol: hypA-2
gene_biotype: protein_coding
description:
  Hydrogenase nickel incorporation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: CTM_06831
symbol: CTM_06831
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.


ensembl_gene_id: CTM_06936
symbol: CTM_06936
gene_biotype: protein_coding
description:
  Transcription activator, effector binding protein; COG2207 AraC-type DNA-binding domain-containing proteins.


ensembl_gene_id: CTM_06991
symbol: CTM_06991
gene_biotype: protein_coding
description:
  Peptidase m56 blar1; COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component.


ensembl_gene_id: CTM_07036
symbol: CTM_07036
gene_biotype: protein_coding
description:
  COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: CTM_07041
symbol: CTM_07041
gene_biotype: protein_coding
description:
  iron(III) dicitrate ABC transporter; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: CTM_07046
symbol: CTM_07046
gene_biotype: protein_coding
description:
  Siderophore ABC transporter ATP-binding protein YusV; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.


ensembl_gene_id: CTM_07081
symbol: aspC
gene_biotype: protein_coding
description:
  aspartyl-tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.


ensembl_gene_id: CTM_07156
symbol: sstT
gene_biotype: protein_coding
description:
  Serine/threonine transporter SstT; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: CTM_07176
symbol: CTM_07176
gene_biotype: protein_coding
description:
  Transcriptional regulatory component of sensory transduction system; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_07231
symbol: corA
gene_biotype: protein_coding
description:
  Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.


ensembl_gene_id: CTM_07276
symbol: CTM_07276
gene_biotype: protein_coding
description:
  Multiple resistance and pH regulation protein F; COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit.


ensembl_gene_id: CTM_07306
symbol: CTM_07306
gene_biotype: protein_coding
description:
  Sodium/proton antiporter shaD; COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit.


ensembl_gene_id: CTM_07311
symbol: CTM_07311
gene_biotype: protein_coding
description:
  Sodium/proton antiporter shaA; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.


ensembl_gene_id: CTM_07316
symbol: CTM_07316
gene_biotype: protein_coding
description:
  Sodium/proton antiporter shaA; COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit.


ensembl_gene_id: CTM_07346
symbol: CTM_07346
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: CTM_07381
symbol: CTM_07381
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; COG2984 ABC-type uncharacterized transport system, periplasmic component.


ensembl_gene_id: CTM_07386
symbol: CTM_07386
gene_biotype: protein_coding
description:
  ABC transporter permease; COG4120 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CTM_07461
symbol: CTM_07461
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase B; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: CTM_07486
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: CTM_07491
symbol: speH
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: CTM_07511
symbol: miaB
gene_biotype: protein_coding
description:
  (dimethylallyl)adenosine tRNA methylthiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: CTM_07516
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: CTM_07521
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: CTM_07526
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: CTM_07531
symbol: hfq
gene_biotype: protein_coding
description:
  RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: CTM_07536
symbol: CTM_07536
gene_biotype: protein_coding
description:
  Aluminum resistance protein; COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance.


ensembl_gene_id: CTM_07541
symbol: lexA
gene_biotype: protein_coding
description:
  LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: CTM_07551
symbol: xerC
gene_biotype: protein_coding
description:
  Site-specific tyrosine recombinase XerC; COG0582 Integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: CTM_07556
symbol: CTM_07556
gene_biotype: protein_coding
description:
  COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: CTM_07606
symbol: CTM_07606
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinase; COG0643 Chemotaxis protein histidine kinase and related kinases.


ensembl_gene_id: CTM_07641
symbol: CTM_07641
gene_biotype: protein_coding
description:
  Nod factor export ATP-binding protein I; COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: CTM_07651
symbol: CTM_07651
gene_biotype: protein_coding
description:
  Aerobic cobaltochelatase subunit CobN2; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.


ensembl_gene_id: CTM_07661
symbol: CTM_07661
gene_biotype: protein_coding
description:
  Ferrichrome-binding periplasmic protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.


ensembl_gene_id: CTM_07666
symbol: CTM_07666
gene_biotype: protein_coding
description:
  Ferric enterobactin transport ATP-binding protein fepC; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.


ensembl_gene_id: CTM_07691
symbol: CTM_07691
gene_biotype: protein_coding
description:
  ABC transporter permease; COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.


ensembl_gene_id: CTM_07726
symbol: CTM_07726
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG1101 ABC-type uncharacterized transport system, ATPase component.


ensembl_gene_id: CTM_07781
symbol: CTM_07781
gene_biotype: protein_coding
description:
  Glycosyl hydrolase; COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.


ensembl_gene_id: CTM_07856
symbol: CTM_07856
gene_biotype: protein_coding
description:
  Stress responsive A/B Barrel Domain-containing protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_07886
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.


ensembl_gene_id: CTM_07901
symbol: CTM_07901
gene_biotype: protein_coding
description:
  Lipoprotein release ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: CTM_07906
symbol: CTM_07906
gene_biotype: protein_coding
description:
  Cell division transporter, ATP-binding protein FtsE; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: CTM_07971
symbol: CTM_07971
gene_biotype: protein_coding
description:
  Flagellin domain-containing protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: CTM_08056
symbol: CTM_08056
gene_biotype: protein_coding
description:
  Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: CTM_08061
symbol: CTM_08061
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: CTM_08231
symbol: CTM_08231
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.


ensembl_gene_id: CTM_08241
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: CTM_08251
symbol: CTM_08251
gene_biotype: protein_coding
description:
  COG2088 Uncharacterized protein, involved in the regulation of septum location; Belongs to the SpoVG family.


ensembl_gene_id: CTM_08321
symbol: CTM_08321
gene_biotype: protein_coding
description:
  DegT/DnrJ/EryC1/StrS family aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: CTM_08336
symbol: CTM_08336
gene_biotype: protein_coding
description:
  Hexapeptide repeat-containing transferase; COG0110 Acetyltransferase (isoleucine patch superfamily).


ensembl_gene_id: CTM_08386
symbol: mutS2
gene_biotype: protein_coding
description:
  Recombination and DNA strand exchange inhibitor protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: CTM_08426
symbol: CTM_08426
gene_biotype: protein_coding
description:
  Cell wall biogenesis regulatory protein; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: CTM_08436
symbol: CTM_08436
gene_biotype: protein_coding
description:
  UDP-glucose 6-dehydrogenase; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: CTM_08441
symbol: CTM_08441
gene_biotype: protein_coding
description:
  Oxidoreductase, NAD-binding Rossmann fold family protein; COG0673 Predicted dehydrogenases and related proteins.


ensembl_gene_id: CTM_08456
symbol: murJ
gene_biotype: protein_coding
description:
  Virulence factor mviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: CTM_08471
symbol: CTM_08471
gene_biotype: protein_coding
description:
  Succinoglycan biosynthesis protein exoA; COG0463 Glycosyltransferases involved in cell wall biogenesis.


ensembl_gene_id: CTM_08491
symbol: CTM_08491
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate glucosephosphotransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.


ensembl_gene_id: CTM_08496
symbol: CTM_08496
gene_biotype: protein_coding
description:
  Teichoic acid biosynthesis protein A; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.


ensembl_gene_id: CTM_08551
symbol: mcsB
gene_biotype: protein_coding
description:
  ATP:guanido phosphotransferase; Catalyzes the specific phosphorylation of arginine residues in proteins; Belongs to the ATP:guanido phosphotransferase family.


ensembl_gene_id: CTM_08556
symbol: CTM_08556
gene_biotype: protein_coding
description:
  Negative regulator of genetic competence mecB/clpC; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.


ensembl_gene_id: CTM_08561
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: CTM_08566
symbol: disA
gene_biotype: protein_coding
description:
  DNA integrity scanning protein DisA; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation; upon encountering a lesion, the DisA focus arrests at the damaged site and halts c-di-AMP synthesis.


ensembl_gene_id: CTM_08581
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: CTM_08586
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacyla [...]


ensembl_gene_id: CTM_08601
symbol: mrnC
gene_biotype: protein_coding
description:
  RNase3 domain-containing protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.


ensembl_gene_id: CTM_08606
symbol: thyX
gene_biotype: protein_coding
description:
  FAD-dependent thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: CTM_08611
symbol: CTM_08611
gene_biotype: protein_coding
description:
  Trmh family tRNA/rRNAmethyltransferase YacO; COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: CTM_08621
symbol: CTM_08621
gene_biotype: protein_coding
description:
  COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family.


ensembl_gene_id: CTM_08626
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: CTM_08631
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: CTM_08636
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: CTM_08646
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: CTM_08651
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: CTM_08656
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: CTM_08661
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: CTM_08666
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: CTM_08671
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: CTM_08681
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: CTM_08686
symbol: rplN
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: CTM_08691
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: CTM_08696
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: CTM_08701
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: CTM_08706
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: CTM_08711
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: CTM_08716
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: CTM_08721
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: CTM_08731
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: CTM_08736
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: CTM_08741
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: CTM_08746
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: CTM_08756
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: CTM_08766
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: CTM_08771
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: CTM_08776
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: CTM_08781
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: CTM_08791
symbol: ecfA
gene_biotype: protein_coding
description:
  Cobalt transporter ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.


ensembl_gene_id: CTM_08801
symbol: ecfT
gene_biotype: protein_coding
description:
  Cobalt transport protein cbiQ; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.


ensembl_gene_id: CTM_08806
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: CTM_08811
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: CTM_08831
symbol: glmS
gene_biotype: protein_coding
description:
  Methylaspartate mutase subunit S; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).


ensembl_gene_id: CTM_08841
symbol: glmE
gene_biotype: protein_coding
description:
  Glutamate mutase subunit E; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).


ensembl_gene_id: CTM_08876
symbol: CTM_08876
gene_biotype: protein_coding
description:
  Citrate [pro-3S]-lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.


ensembl_gene_id: CTM_08926
symbol: dacA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.


ensembl_gene_id: CTM_08951
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: CTM_08956
symbol: glmS-2
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: CTM_08981
symbol: CTM_08981
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase CheA; COG0643 Chemotaxis protein histidine kinase and related kinases.


ensembl_gene_id: CTM_08986
symbol: argD
gene_biotype: protein_coding
description:
  COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: CTM_08991
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: CTM_08996
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: CTM_09001
symbol: argJ
gene_biotype: protein_coding
description:
  N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: CTM_09026
symbol: CTM_09026
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Belongs to the sigma-70 factor family.


ensembl_gene_id: CTM_09081
symbol: CTM_09081
gene_biotype: protein_coding
description:
  iron(III)-binding periplasmic protein precursor; COG1840 ABC-type Fe3+ transport system, periplasmic component.


ensembl_gene_id: CTM_09091
symbol: CTM_09091
gene_biotype: protein_coding
description:
  iron(III)-transport ATP-binding protein sfuC; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_09106
symbol: ulaA
gene_biotype: protein_coding
description:
  PTS system ascorbate-specific transporter subunit IIC; COG3037 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: CTM_09121
symbol: CTM_09121
gene_biotype: protein_coding
description:
  Hypothetical protein; COG4176 ABC-type proline/glycine betaine transport system, permease component.


ensembl_gene_id: CTM_09126
symbol: CTM_09126
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.


ensembl_gene_id: CTM_09146
symbol: CTM_09146
gene_biotype: protein_coding
description:
  acetoacetyl-COA transferase subunit alpha; COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; Belongs to the 3-oxoacid CoA-transferase family.


ensembl_gene_id: CTM_09206
symbol: CTM_09206
gene_biotype: protein_coding
description:
  Sigma-70 region 4 type 2; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.


ensembl_gene_id: CTM_09221
symbol: CTM_09221
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1387 Histidinol phosphatase and related hydrolases of the PHP family; Belongs to the PHP hydrolase family. HisK subfamily.


ensembl_gene_id: CTM_09266
symbol: CTM_09266
gene_biotype: protein_coding
description:
  Relaxase/mobilization nuclease family protein; COG3843 Type IV secretory pathway, VirD2 components (relaxase).


ensembl_gene_id: CTM_09326
symbol: CTM_09326
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.


ensembl_gene_id: CTM_09331
symbol: CTM_09331
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.


ensembl_gene_id: CTM_09336
symbol: CTM_09336
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_09341
symbol: CTM_09341
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.


ensembl_gene_id: CTM_09346
symbol: ade
gene_biotype: protein_coding
description:
  COG1001 Adenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.


ensembl_gene_id: CTM_09366
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: CTM_09371
symbol: topB
gene_biotype: protein_coding
description:
  DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...]


ensembl_gene_id: CTM_09381
symbol: pdxT
gene_biotype: protein_coding
description:
  Glutamine amidotransferase subunit PdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: CTM_09386
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: CTM_09401
symbol: CTM_09401
gene_biotype: protein_coding
description:
  COG0374 Ni,Fe-hydrogenase I large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.


ensembl_gene_id: CTM_09411
symbol: dinB
gene_biotype: protein_coding
description:
  DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: CTM_09436
symbol: CTM_09436
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.


ensembl_gene_id: CTM_09451
symbol: CTM_09451
gene_biotype: protein_coding
description:
  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain-containing protein; COG1705 Muramidase (flagellum-specific).


ensembl_gene_id: CTM_09476
symbol: CTM_09476
gene_biotype: protein_coding
description:
  Ferrous iron transporter FeoB; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: CTM_09501
symbol: CTM_09501
gene_biotype: protein_coding
description:
  Short-chain alcohol dehydrogenase, general stress protein 39; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: CTM_09641
symbol: CTM_09641
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain).


ensembl_gene_id: CTM_09651
symbol: CTM_09651
gene_biotype: protein_coding
description:
  Activator of (R)-2-hydroxyglutaryl-CoA dehydratase; COG3580 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: CTM_09661
symbol: CTM_09661
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; COG3434 Predicted signal transduction protein containing EAL and modified HD-GYP domains.


ensembl_gene_id: CTM_09716
symbol: CTM_09716
gene_biotype: protein_coding
description:
  Hypothetical protein; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family.


ensembl_gene_id: CTM_09756
symbol: CTM_09756
gene_biotype: protein_coding
description:
  ABC transporter permease protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: CTM_09801
symbol: CTM_09801
gene_biotype: protein_coding
description:
  Pyridoxamine kinase; COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; Belongs to the pyridoxine kinase family.


ensembl_gene_id: CTM_09821
symbol: CTM_09821
gene_biotype: protein_coding
description:
  Molybdenum hydroxylase accessory protein, YgfJ family; COG2068 Uncharacterized MobA-related protein.


ensembl_gene_id: CTM_09841
symbol: CTM_09841
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.


ensembl_gene_id: CTM_09846
symbol: CTM_09846
gene_biotype: protein_coding
description:
  Periplasmic binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.


ensembl_gene_id: CTM_09896
symbol: iolC
gene_biotype: protein_coding
description:
  5-dehydro-2-deoxygluconokinase; Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5-dehydro-2- deoxy-D-gluconate (DKGP).


ensembl_gene_id: CTM_09901
symbol: CTM_09901
gene_biotype: protein_coding
description:
  Myo-inositol catabolism protein IolB; COG3718 Uncharacterized enzyme involved in inositol metabolism.


ensembl_gene_id: CTM_09906
symbol: iolD
gene_biotype: protein_coding
description:
  Myo-inositol catabolism protein iolD; Involved in the cleavage of the C1-C2 bond of 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy-glucuronate (5DG).


ensembl_gene_id: CTM_09916
symbol: iolE
gene_biotype: protein_coding
description:
  Myo-inositol catabolism protein iolE; Catalyzes the dehydration of inosose (2-keto-myo-inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi-inositol).


ensembl_gene_id: CTM_09926
symbol: CTM_09926
gene_biotype: protein_coding
description:
  Transporter; COG4146 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: CTM_09951
symbol: CTM_09951
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.


ensembl_gene_id: CTM_10021
symbol: CTM_10021
gene_biotype: protein_coding
description:
  Capsular polysaccharide biosynthsis protein; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.


ensembl_gene_id: CTM_10026
symbol: CTM_10026
gene_biotype: protein_coding
description:
  NusG antitermination factor; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: CTM_10031
symbol: CTM_10031
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: CTM_10036
symbol: CTM_10036
gene_biotype: protein_coding
description:
  COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: CTM_10046
symbol: CTM_10046
gene_biotype: protein_coding
description:
  Putative galactosyl transferase; COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases.


ensembl_gene_id: CTM_10076
symbol: CTM_10076
gene_biotype: protein_coding
description:
  Coenzyme F420 hydrogenase/dehydrogenase subunit beta domain-containing protein; COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).


ensembl_gene_id: CTM_10096
symbol: CTM_10096
gene_biotype: protein_coding
description:
  Sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating); COG0451 Nucleoside-diphosphate-sugar epimerases.


ensembl_gene_id: CTM_10106
symbol: lolD
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.


ensembl_gene_id: CTM_10136
symbol: CTM_10136
gene_biotype: protein_coding
description:
  Transglutaminase domain-containing protein; COG5279 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain.


ensembl_gene_id: CTM_10171
symbol: mntP
gene_biotype: protein_coding
description:
  Hypothetical protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.


ensembl_gene_id: CTM_10191
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: CTM_10196
symbol: iscS-2
gene_biotype: protein_coding
description:
  Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.


ensembl_gene_id: CTM_10216
symbol: CTM_10216
gene_biotype: protein_coding
description:
  ABC transporter-like protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: CTM_10266
symbol: rnz
gene_biotype: protein_coding
description:
  Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.


ensembl_gene_id: CTM_10296
symbol: sbcD
gene_biotype: protein_coding
description:
  Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: CTM_10316
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: CTM_10331
symbol: CTM_10331
gene_biotype: protein_coding
description:
  Putative peptidase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: CTM_10356
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: CTM_10366
symbol: CTM_10366
gene_biotype: protein_coding
description:
  ADP-ribose pyrophosphatase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: CTM_10391
symbol: bioA
gene_biotype: protein_coding
description:
  Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.


ensembl_gene_id: CTM_10396
symbol: bioD
gene_biotype: protein_coding
description:
  Dithiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: CTM_10401
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: CTM_10416
symbol: CTM_10416
gene_biotype: protein_coding
description:
  Putative CoA-substrate-specific enzyme activase; COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain).


ensembl_gene_id: CTM_10426
symbol: queE
gene_biotype: protein_coding
description:
  Radical SAM domain-containing protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: CTM_10436
symbol: queC
gene_biotype: protein_coding
description:
  Queuosine Biosynthesis QueC ATPase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)).


ensembl_gene_id: CTM_10441
symbol: CTM_10441
gene_biotype: protein_coding
description:
  Molybdopterin binding aldehyde oxidase and xanthine dehydrogenase; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.


ensembl_gene_id: CTM_10446
symbol: CTM_10446
gene_biotype: protein_coding
description:
  (2Fe-2S)-binding domain-containing protein; COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.


ensembl_gene_id: CTM_10451
symbol: CTM_10451
gene_biotype: protein_coding
description:
  FAD-binding subunit of oxidoreductase; COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs.


ensembl_gene_id: CTM_10566
symbol: msrB
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase; COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase.


ensembl_gene_id: CTM_10576
symbol: CTM_10576
gene_biotype: protein_coding
description:
  Oxidoreductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: CTM_10606
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: CTM_10616
symbol: CTM_10616
gene_biotype: protein_coding
description:
  Flavoredoxin; COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.


ensembl_gene_id: CTM_10646
symbol: CTM_10646
gene_biotype: protein_coding
description:
  CobQ/CobB/MinD/ParA family protein; COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; overlaps another CDS with the same product name.


ensembl_gene_id: CTM_10661
symbol: CTM_10661
gene_biotype: protein_coding
description:
  Nucleotide-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: CTM_10773
symbol: CTM_10773
gene_biotype: protein_coding
description:
  COG2221 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: CTM_10778
symbol: CTM_10778
gene_biotype: protein_coding
description:
  Anaerobic sulfite reductase subunit B; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.


ensembl_gene_id: CTM_10803
symbol: CTM_10803
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis sensory transducer with Cache sensor; COG0840 Methyl-accepting chemotaxis protein.


ensembl_gene_id: CTM_10823
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: CTM_10828
symbol: thiC
gene_biotype: protein_coding
description:
  Phosphomethylpyrimidine synthase ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.


ensembl_gene_id: CTM_10843
symbol: CTM_10843
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities.


ensembl_gene_id: CTM_10858
symbol: CTM_10858
gene_biotype: protein_coding
description:
  COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: CTM_10873
symbol: CTM_10873
gene_biotype: protein_coding
description:
  Proton/sodium-glutamate symport protein; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: CTM_10908
symbol: CTM_10908
gene_biotype: protein_coding
description:
  Ser/Thr protein phosphatase; COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.


ensembl_gene_id: CTM_10933
symbol: CTM_10933
gene_biotype: protein_coding
description:
  NUDIX family hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: CTM_10938
symbol: CTM_10938
gene_biotype: protein_coding
description:
  DNA mismatch repair protein hexA; COG0249 Mismatch repair ATPase (MutS family); Belongs to the DNA mismatch repair MutS family.


ensembl_gene_id: CTM_10983
symbol: CTM_10983
gene_biotype: protein_coding
description:
  PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.


ensembl_gene_id: CTM_11028
symbol: CTM_11028
gene_biotype: protein_coding
description:
  AbrB family transcriptional regulator; COG2002 Regulators of stationary/sporulation gene expression.


ensembl_gene_id: CTM_11048
symbol: CTM_11048
gene_biotype: protein_coding
description:
  FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.


ensembl_gene_id: CTM_11053
symbol: CTM_11053
gene_biotype: protein_coding
description:
  Membrane protein, transporter; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: CTM_11103
symbol: fabG
gene_biotype: protein_coding
description:
  3-ketoacyl-(acyl-carrier-protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: CTM_11108
symbol: tpx
gene_biotype: protein_coding
description:
  Lipid hydroperoxide peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.


ensembl_gene_id: CTM_11128
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: CTM_11138
symbol: CTM_11138
gene_biotype: protein_coding
description:
  Putative cytolysin ABC transporter precursor; COG0842 ABC-type multidrug transport system, permease component.


ensembl_gene_id: CTM_11148
symbol: CTM_11148
gene_biotype: protein_coding
description:
  LuxR family two component transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: CTM_11168
symbol: CTM_11168
gene_biotype: protein_coding
description:
  Hypothetical protein; COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.


ensembl_gene_id: CTM_11173
symbol: CTM_11173
gene_biotype: protein_coding
description:
  PhoH family protein; COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH.


ensembl_gene_id: CTM_11178
symbol: CTM_11178
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system carrier protein; Component of the transport system for branched-chain amino acids.


ensembl_gene_id: CTM_11183
symbol: CTM_11183
gene_biotype: protein_coding
description:
  COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase.


ensembl_gene_id: CTM_11208
symbol: CTM_11208
gene_biotype: protein_coding
description:
  FeoB-like GTPase, responsible for iron uptake; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: CTM_11248
symbol: CTM_11248
gene_biotype: protein_coding
description:
  Branched chain amino acid transport system II carrier protein; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family.


ensembl_gene_id: CTM_11253
symbol: pxpA
gene_biotype: protein_coding
description:
  LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: CTM_11365
symbol: CTM_11365
gene_biotype: protein_coding
description:
  Sphaericolysin; Sulfhydryl-activated toxin that causes cytolysis by forming pores in cholesterol containing host membranes. After binding to target membranes, the protein undergoes a major conformation change, leading to its insertion in the host membrane and formation of an oligomeric pore complex; Belongs to the thiol-activated cytolysin family.


ensembl_gene_id: CTM_11380
symbol: CTM_11380
gene_biotype: protein_coding
description:
  Fur family transcriptional regulator; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.


ensembl_gene_id: CTM_11405
symbol: CTM_11405
gene_biotype: protein_coding
description:
  Transporter permease; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: CTM_11410
symbol: CTM_11410
gene_biotype: protein_coding
description:
  Iron ABC transporter ATPase; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.


ensembl_gene_id: CTM_11415
symbol: CTM_11415
gene_biotype: protein_coding
description:
  Metal ion (Fe 3+) ABC transporter ATPase; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.


ensembl_gene_id: CTM_11510
symbol: CTM_11510
gene_biotype: protein_coding
description:
  Membrane spanning protein; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.


ensembl_gene_id: CTM_11550
symbol: ftsH-2
gene_biotype: protein_coding
description:
  Cell division protein ftsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: CTM_11565
symbol: CTM_11565
gene_biotype: protein_coding
description:
  Cobalt-zinc-cadmium resistance protein czcD; COG0053 Predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: CTM_11575
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: CTM_11595
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: CTM_11605
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: CTM_11785
symbol: CTM_11785
gene_biotype: protein_coding
description:
  Two component sigma54 specific Fis family transcriptional regulator; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: CTM_11790
symbol: CTM_11790
gene_biotype: protein_coding
description:
  COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation.


ensembl_gene_id: CTM_11865
symbol: CTM_11865
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control.


ensembl_gene_id: CTM_11910
symbol: CTM_11910
gene_biotype: protein_coding
description:
  Sensory box sigma-54 dependent transcriptional regulator; COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: CTM_11940
symbol: CTM_11940
gene_biotype: protein_coding
description:
  Gluconate kinase; COG1070 Sugar (pentulose and hexulose) kinases; Belongs to the FGGY kinase family.


ensembl_gene_id: CTM_11955
symbol: CTM_11955
gene_biotype: protein_coding
description:
  Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: CTM_11975
symbol: atpD-2
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: CTM_11980
symbol: atpB-2
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.


ensembl_gene_id: CTM_11985
symbol: atpA-2
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: CTM_11990
symbol: atpF-2
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: CTM_12000
symbol: atpE-2
gene_biotype: protein_coding
description:
  V-type ATPase, E subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: CTM_12005
symbol: CTM_12005
gene_biotype: protein_coding
description:
  COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; Belongs to the V-ATPase proteolipid subunit family.


ensembl_gene_id: CTM_12040
symbol: CTM_12040
gene_biotype: protein_coding
description:
  COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: CTM_12090
symbol: CTM_12090
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.


ensembl_gene_id: CTM_12125
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: CTM_12130
symbol: CTM_12130
gene_biotype: protein_coding
description:
  Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: CTM_12135
symbol: priA
gene_biotype: protein_coding
description:
  Primosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: CTM_12145
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: CTM_12155
symbol: CTM_12155
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.


ensembl_gene_id: CTM_12160
symbol: rlmN
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: CTM_12175
symbol: rsgA
gene_biotype: protein_coding
description:
  GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: CTM_12220
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: CTM_12235
symbol: coaD
gene_biotype: protein_coding
description:
  Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: CTM_12250
symbol: tmcAL
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.


ensembl_gene_id: CTM_12260
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase A/propionate kinase 2; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: CTM_12275
symbol: plsX
gene_biotype: protein_coding
description:
  Phosphate acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: CTM_12285
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: CTM_12300
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: CTM_12305
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: CTM_12310
symbol: CTM_12310
gene_biotype: protein_coding
description:
  DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.


ensembl_gene_id: CTM_12315
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: CTM_12330
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA-processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: CTM_12335
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: CTM_12340
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: CTM_12350
symbol: rbgA
gene_biotype: protein_coding
description:
  GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.


ensembl_gene_id: CTM_12360
symbol: CTM_12360
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.


ensembl_gene_id: CTM_12370
symbol: CTM_12370
gene_biotype: protein_coding
description:
  SMF protein, DNA processing chain A; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.


ensembl_gene_id: CTM_12375
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: CTM_12380
symbol: codY
gene_biotype: protein_coding
description:
  Transcriptional repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.


ensembl_gene_id: CTM_12390
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: CTM_12400
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: CTM_12405
symbol: CTM_12405
gene_biotype: protein_coding
description:
  Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: CTM_12420
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: CTM_12430
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: CTM_12435
symbol: rimP
gene_biotype: protein_coding
description:
  Ribosome maturation protein RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: CTM_12440
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription elongation factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: CTM_12445
symbol: CTM_12445
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination.


ensembl_gene_id: CTM_12455
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: CTM_12460
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: CTM_12470
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: CTM_12475
symbol: CTM_12475
gene_biotype: protein_coding
description:
  Bifunctional riboflavin kinase/FMN adenylyltransferase; COG0196 FAD synthase; Belongs to the ribF family.


ensembl_gene_id: CTM_12480
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: CTM_12485
symbol: pnp
gene_biotype: protein_coding
description:
  Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: CTM_12490
symbol: CTM_12490
gene_biotype: protein_coding
description:
  Zinc-dependent protease; COG0612 Predicted Zn-dependent peptidases; Belongs to the peptidase M16 family.


ensembl_gene_id: CTM_12515
symbol: rimO
gene_biotype: protein_coding
description:
  Fe-S oxidoreductase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: CTM_12520
symbol: CTM_12520
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: CTM_12525
symbol: recA
gene_biotype: protein_coding
description:
  Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: CTM_12540
symbol: CTM_12540
gene_biotype: protein_coding
description:
  Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family.


ensembl_gene_id: CTM_12550
symbol: CTM_12550
gene_biotype: protein_coding
description:
  Multidrug resistance protein, SMR family; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: CTM_12630
symbol: CTM_12630
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: CTM_12675
symbol: CTM_12675
gene_biotype: protein_coding
description:
  L-serine dehydratase, iron-sulfur-dependent subunit alpha; COG1760 L-serine deaminase; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: CTM_12680
symbol: CTM_12680
gene_biotype: protein_coding
description:
  L-serine dehydratase, iron-sulfur-dependent subunit beta; COG1760 L-serine deaminase; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: CTM_12685
symbol: CTM_12685
gene_biotype: protein_coding
description:
  Serine/threonine sodium symporter; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: CTM_12740
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: CTM_12745
symbol: scpA
gene_biotype: protein_coding
description:
  Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: CTM_12760
symbol: CTM_12760
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: CTM_12795
symbol: CTM_12795
gene_biotype: protein_coding
description:
  Protein Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.


ensembl_gene_id: CTM_12815
symbol: nadK
gene_biotype: protein_coding
description:
  Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: CTM_12825
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: CTM_12840
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: CTM_12845
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: CTM_12850
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: CTM_12855
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: CTM_12910
symbol: efp
gene_biotype: protein_coding
description:
  Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: CTM_12950
symbol: CTM_12950
gene_biotype: protein_coding
description:
  Trehalose PTS trehalose component IIBC; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.


ensembl_gene_id: CTM_12955
symbol: CTM_12955
gene_biotype: protein_coding
description:
  Phosphotransferase system, EIIC; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.


ensembl_gene_id: CTM_12990
symbol: CTM_12990
gene_biotype: protein_coding
description:
  Inositol monophosphatase; COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family.


ensembl_gene_id: CTM_13080
symbol: CTM_13080
gene_biotype: protein_coding
description:
  Putative aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: CTM_13090
symbol: CTM_13090
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: CTM_13095
symbol: CTM_13095
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: CTM_13125
symbol: CTM_13125
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: CTM_13130
symbol: CTM_13130
gene_biotype: protein_coding
description:
  ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: CTM_13185
symbol: CTM_13185
gene_biotype: protein_coding
description:
  Pyruvate synthase subunit porC; COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.


ensembl_gene_id: CTM_13190
symbol: CTM_13190
gene_biotype: protein_coding
description:
  Pyruvate synthase subunit porD; COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit.


ensembl_gene_id: CTM_13195
symbol: CTM_13195
gene_biotype: protein_coding
description:
  Pyruvate synthase subunit porA; COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.


ensembl_gene_id: CTM_13200
symbol: CTM_13200
gene_biotype: protein_coding
description:
  Pyruvate synthase subunit porB; COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.


ensembl_gene_id: CTM_13220
symbol: luxS
gene_biotype: protein_coding
description:
  S-ribosylhomocysteinase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.


ensembl_gene_id: CTM_13240
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: CTM_13250
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: CTM_13255
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: CTM_13260
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: CTM_13265
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily.


ensembl_gene_id: CTM_13270
symbol: leuB
gene_biotype: protein_coding
description:
  Isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: CTM_13280
symbol: CTM_13280
gene_biotype: protein_coding
description:
  Acetolactate synthase large subunit; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].


ensembl_gene_id: CTM_13290
symbol: CTM_13290
gene_biotype: protein_coding
description:
  Sodium:dicarboxylate symporter family protein; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: CTM_13300
symbol: xpt
gene_biotype: protein_coding
description:
  Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.


ensembl_gene_id: CTM_13305
symbol: CTM_13305
gene_biotype: protein_coding
description:
  Bmp family membrane protein; COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.


ensembl_gene_id: CTM_13310
symbol: CTM_13310
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG3845 ABC-type uncharacterized transport systems, ATPase components.


ensembl_gene_id: CTM_13315
symbol: CTM_13315
gene_biotype: protein_coding
description:
  Branched chain amino acid ABC transporter permease; COG4603 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CTM_13320
symbol: CTM_13320
gene_biotype: protein_coding
description:
  ABC transporter permease; COG1079 Uncharacterized ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CTM_13325
symbol: pyrB
gene_biotype: protein_coding
description:
  COG0540 Aspartate carbamoyltransferase, catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: CTM_13335
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: CTM_13340
symbol: pyrF
gene_biotype: protein_coding
description:
  COG0284 Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.


ensembl_gene_id: CTM_13345
symbol: pyrK
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).


ensembl_gene_id: CTM_13355
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: CTM_13370
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: CTM_13375
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: CTM_13380
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: CTM_13390
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: CTM_13395
symbol: engB
gene_biotype: protein_coding
description:
  GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: CTM_13435
symbol: CTM_13435
gene_biotype: protein_coding
description:
  High-affinity Zinc uptake system membrane protein znuB; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.


ensembl_gene_id: CTM_13445
symbol: CTM_13445
gene_biotype: protein_coding
description:
  High-affinity Zinc uptake system protein znuA; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: CTM_13523
symbol: CTM_13523
gene_biotype: protein_coding
description:
  Putative anaerobic ribonucleoside-triphosphate reductase; COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains.


ensembl_gene_id: CTM_13528
symbol: CTM_13528
gene_biotype: protein_coding
description:
  ABC transporter sulfonate-family extracellular solute-binding protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.


ensembl_gene_id: CTM_13533
symbol: CTM_13533
gene_biotype: protein_coding
description:
  Aliphatic sulfonates ABC transporter ATP-binding protein; COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.


ensembl_gene_id: CTM_13573
symbol: CTM_13573
gene_biotype: protein_coding
description:
  PTS system lactose/cellobiose family transporter subunit IIC; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.


ensembl_gene_id: CTM_13578
symbol: CTM_13578
gene_biotype: protein_coding
description:
  PTS system lactose/cellobiose-specific family transporter subunit IIB; COG1440 Phosphotransferase system cellobiose-specific component IIB.


ensembl_gene_id: CTM_13593
symbol: CTM_13593
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.


ensembl_gene_id: CTM_13618
symbol: CTM_13618
gene_biotype: protein_coding
description:
  CarD family transcriptional regulator; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: CTM_13628
symbol: pcp
gene_biotype: protein_coding
description:
  Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.


ensembl_gene_id: CTM_13673
symbol: CTM_13673
gene_biotype: protein_coding
description:
  Glycoside hydrolase family protein; COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.


ensembl_gene_id: CTM_13703
symbol: CTM_13703
gene_biotype: protein_coding
description:
  ABC transporter-like protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: CTM_13733
symbol: CTM_13733
gene_biotype: protein_coding
description:
  Arginase family hydrolase; COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.


ensembl_gene_id: CTM_13738
symbol: CTM_13738
gene_biotype: protein_coding
description:
  Meso-diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.


ensembl_gene_id: CTM_13753
symbol: CTM_13753
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain.


ensembl_gene_id: CTM_13778
symbol: rnj-3
gene_biotype: protein_coding
description:
  RNA-metabolising metallo-beta-lactamase; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: CTM_13933
symbol: CTM_13933
gene_biotype: protein_coding
description:
  Restriction modification system DNA specificity subunit; COG0732 Restriction endonuclease S subunits.


ensembl_gene_id: CTM_13948
symbol: CTM_13948
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.


ensembl_gene_id: CTM_14028
symbol: CTM_14028
gene_biotype: protein_coding
description:
  Tn7-like transposition protein C; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.


ensembl_gene_id: CTM_14113
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: CTM_14128
symbol: CTM_14128
gene_biotype: protein_coding
description:
  Sodium:neurotransmitter symporter family protein; COG0733 Na+-dependent transporters of the SNF family; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.


ensembl_gene_id: CTM_14148
symbol: CTM_14148
gene_biotype: protein_coding
description:
  Sigma 54 interacting domain-containing protein; COG3839 ABC-type sugar transport systems, ATPase components.


ensembl_gene_id: CTM_14178
symbol: CTM_14178
gene_biotype: protein_coding
description:
  Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: CTM_14183
symbol: CTM_14183
gene_biotype: protein_coding
description:
  Trk system potassium uptake protein trkA; COG0475 Kef-type K+ transport systems, membrane components.


ensembl_gene_id: CTM_14288
symbol: CTM_14288
gene_biotype: protein_coding
description:
  parB-like partition protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.


ensembl_gene_id: CTM_14328
symbol: msrA
gene_biotype: protein_coding
description:
  Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: CTM_14338
symbol: CTM_14338
gene_biotype: protein_coding
description:
  Alginate O-acetylation protein; COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: CTM_14348
symbol: CTM_14348
gene_biotype: protein_coding
description:
  Platelet activating factor acetylhydrolase-like protein; COG2755 Lysophospholipase L1 and related esterases.


ensembl_gene_id: CTM_14353
symbol: CTM_14353
gene_biotype: protein_coding
description:
  gamma-D-glutamyl-L-diamino acid endopeptidase I; COG3409 Putative peptidoglycan-binding domain-containing protein.


ensembl_gene_id: CTM_14548
symbol: CTM_14548
gene_biotype: protein_coding
description:
  Nucleic acid-binding protein; COG2996 Uncharacterized protein conserved in bacteria; Belongs to the CvfB family.


ensembl_gene_id: CTM_14573
symbol: CTM_14573
gene_biotype: protein_coding
description:
  NifH/frxC-family protein; COG1348 Nitrogenase subunit NifH (ATPase); Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: CTM_14578
symbol: CTM_14578
gene_biotype: protein_coding
description:
  Oxidoreductase/nitrogenase, component 1; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.


ensembl_gene_id: CTM_14613
symbol: CTM_14613
gene_biotype: protein_coding
description:
  FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COG0542 ATPases with chaperone activity, ATP-binding subunit.


ensembl_gene_id: CTM_14633
symbol: CTM_14633
gene_biotype: protein_coding
description:
  LPXTG-motif cell wall anchor domain-containing protein; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases.


ensembl_gene_id: CTM_14643
symbol: CTM_14643
gene_biotype: protein_coding
description:
  Glycine/betaine transport ATP-binding protein; COG1125 ABC-type proline/glycine betaine transport systems, ATPase components.


ensembl_gene_id: CTM_14673
symbol: CTM_14673
gene_biotype: protein_coding
description:
  Hypothetical protein; COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: CTM_14693
symbol: CTM_14693
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: CTM_14703
symbol: ribBA
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein ribA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: CTM_14708
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: CTM_14713
symbol: CTM_14713
gene_biotype: protein_coding
description:
  FMN-binding domain-containing protein; COG4939 Major membrane immunogen, membrane-anchored lipoprotein.


ensembl_gene_id: CTM_14718
symbol: rnfG-2
gene_biotype: protein_coding
description:
  Electron transport complex protein (RnfG/NqrC); Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.


ensembl_gene_id: CTM_14733
symbol: CTM_14733
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: CTM_14738
symbol: nadE
gene_biotype: protein_coding
description:
  NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: CTM_14898
symbol: CTM_14898
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.


ensembl_gene_id: CTM_14913
symbol: CTM_14913
gene_biotype: protein_coding
description:
  NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: CTM_14918
symbol: CTM_14918
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: CTM_14953
symbol: CTM_14953
gene_biotype: protein_coding
description:
  COG0300 Short-chain dehydrogenases of various substrate specificities; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: CTM_15008
symbol: CTM_15008
gene_biotype: protein_coding
description:
  COG0685 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: CTM_15023
symbol: CTM_15023
gene_biotype: protein_coding
description:
  5-methyltetrahydrofolate:homocysteine S-methyltransferase; COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.


ensembl_gene_id: CTM_15033
symbol: CTM_15033
gene_biotype: protein_coding
description:
  S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase; COG2247 Putative cell wall-binding domain.


ensembl_gene_id: CTM_15143
symbol: CTM_15143
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis.


ensembl_gene_id: CTM_15158
symbol: CTM_15158
gene_biotype: protein_coding
description:
  Bacitracin transport ATP-binding protein bcrA; COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: CTM_15183
symbol: CTM_15183
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: CTM_15188
symbol: CTM_15188
gene_biotype: protein_coding
description:
  Dihydropteroate synthase FolP; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: CTM_15253
symbol: CTM_15253
gene_biotype: protein_coding
description:
  Oligopeptide transport ATP-binding protein oppD; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_15258
symbol: CTM_15258
gene_biotype: protein_coding
description:
  Peptide transport ATP-binding protein; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.


ensembl_gene_id: CTM_15288
symbol: CTM_15288
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1393 Arsenate reductase and related proteins, glutaredoxin family; Belongs to the ArsC family.


ensembl_gene_id: CTM_15303
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: CTM_15308
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: CTM_15313
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: CTM_15328
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: CTM_15463
symbol: CTM_15463
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.


ensembl_gene_id: CTM_15518
symbol: CTM_15518
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor family protein; COG1191 DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family.


ensembl_gene_id: CTM_15538
symbol: CTM_15538
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, HTH-type; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_15618
symbol: ftsH-3
gene_biotype: protein_coding
description:
  ATP-dependent zinc metallopeptidase; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: CTM_15648
symbol: clpB
gene_biotype: protein_coding
description:
  clpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: CTM_15673
symbol: CTM_15673
gene_biotype: protein_coding
description:
  Encapsulation protein capA; COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation).


ensembl_gene_id: CTM_15683
symbol: pckA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.


ensembl_gene_id: CTM_15693
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl pyrophosphate phosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: CTM_15713
symbol: CTM_15713
gene_biotype: protein_coding
description:
  Response regulator receiver sensor signal transduction histidine kinase; COG0784 FOG: CheY-like receiver.


ensembl_gene_id: CTM_15723
symbol: CTM_15723
gene_biotype: protein_coding
description:
  Putative signal transduction protein; COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain.


ensembl_gene_id: CTM_15742
symbol: CTM_15742
gene_biotype: protein_coding
description:
  RNA-binding S4 domain-containing protein; COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).


ensembl_gene_id: CTM_15747
symbol: CTM_15747
gene_biotype: protein_coding
description:
  Hypothetical protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: CTM_15752
symbol: CTM_15752
gene_biotype: protein_coding
description:
  MazG family protein; COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain.


ensembl_gene_id: CTM_15767
symbol: prsA
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.


ensembl_gene_id: CTM_15772
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: CTM_15777
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: CTM_15797
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: CTM_15802
symbol: glmU
gene_biotype: protein_coding
description:
  Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: CTM_15812
symbol: CTM_15812
gene_biotype: protein_coding
description:
  Pur operon repressor; COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.


ensembl_gene_id: CTM_15847
symbol: comB
gene_biotype: protein_coding
description:
  2-phosphosulfolactate phosphatase; COG2045 Phosphosulfolactate phosphohydrolase and related enzymes; Belongs to the ComB family.


ensembl_gene_id: CTM_15852
symbol: CTM_15852
gene_biotype: protein_coding
description:
  Putative PucR family transcriptional regulator; COG2508 Regulator of polyketide synthase expression.


ensembl_gene_id: CTM_15857
symbol: CTM_15857
gene_biotype: protein_coding
description:
  Maltose ABC transporter; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CTM_15877
symbol: CTM_15877
gene_biotype: protein_coding
description:
  Radical SAM protein; COG1313 Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins.


ensembl_gene_id: CTM_15947
symbol: rlmH
gene_biotype: protein_coding
description:
  rRNA large subunit methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: CTM_16017
symbol: surE
gene_biotype: protein_coding
description:
  Stationary phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: CTM_16041
symbol: CTM_16041
gene_biotype: protein_coding
description:
  NADH pyrophosphatase; COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding.


ensembl_gene_id: CTM_16046
symbol: sfsA
gene_biotype: protein_coding
description:
  DNA-binding transcriptional regulator; COG1489 DNA-binding protein, stimulates sugar fermentation; Belongs to the SfsA family.


ensembl_gene_id: CTM_16071
symbol: CTM_16071
gene_biotype: protein_coding
description:
  Peptidase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: CTM_16086
symbol: CTM_16086
gene_biotype: protein_coding
description:
  Signal-transduction and transcriptional-control protein; COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: CTM_16101
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: CTM_16106
symbol: CTM_16106
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: CTM_16111
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: CTM_16126
symbol: tadA
gene_biotype: protein_coding
description:
  Cytosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: CTM_16197
symbol: CTM_16197
gene_biotype: protein_coding
description:
  COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: CTM_16252
symbol: CTM_16252
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; COG0840 Methyl-accepting chemotaxis protein.


ensembl_gene_id: CTM_16282
symbol: CTM_16282
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: CTM_16302
symbol: CTM_16302
gene_biotype: protein_coding
description:
  ABC transporter-like protein; COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.


ensembl_gene_id: CTM_16352
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: CTM_16367
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: CTM_16382
symbol: CTM_16382
gene_biotype: protein_coding
description:
  COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: CTM_16387
symbol: pheS
gene_biotype: protein_coding
description:
  COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: CTM_16392
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA ligase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: CTM_16397
symbol: CTM_16397
gene_biotype: protein_coding
description:
  Hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: CTM_16442
symbol: CTM_16442
gene_biotype: protein_coding
description:
  ABC transporter-like protein; COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.


ensembl_gene_id: CTM_16447
symbol: CTM_16447
gene_biotype: protein_coding
description:
  COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CTM_16452
symbol: CTM_16452
gene_biotype: protein_coding
description:
  COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CTM_16542
symbol: CTM_16542
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: CTM_16562
symbol: purE
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: CTM_16567
symbol: purC
gene_biotype: protein_coding
description:
  COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; Belongs to the SAICAR synthetase family.


ensembl_gene_id: CTM_16582
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: CTM_16587
symbol: purH
gene_biotype: protein_coding
description:
  Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful).


ensembl_gene_id: CTM_16607
symbol: CTM_16607
gene_biotype: protein_coding
description:
  Membrane-associated ATP-binding domain-containing protein; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.


ensembl_gene_id: CTM_16637
symbol: CTM_16637
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor, ECF01-type; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: CTM_16662
symbol: CTM_16662
gene_biotype: protein_coding
description:
  ECF subfamily RNA polymerase sigma-24 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: CTM_16747
symbol: CTM_16747
gene_biotype: protein_coding
description:
  Dipeptidase PepV; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: CTM_16767
symbol: CTM_16767
gene_biotype: protein_coding
description:
  Mandelate racemase/muconate lactonizing protein; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.


ensembl_gene_id: CTM_16792
symbol: CTM_16792
gene_biotype: protein_coding
description:
  Alkaline phosphatase; COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.


ensembl_gene_id: CTM_16807
symbol: CTM_16807
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase RumA; COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: CTM_16847
symbol: CTM_16847
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.


ensembl_gene_id: CTM_16937
symbol: CTM_16937
gene_biotype: protein_coding
description:
  DNA methylase; COG1475 Predicted transcriptional regulators; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: CTM_16977
symbol: CTM_16977
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0740 Protease subunit of ATP-dependent Clp proteases; Belongs to the peptidase S14 family.


ensembl_gene_id: CTM_17262
symbol: CTM_17262
gene_biotype: protein_coding
description:
  Chromosome partitioning parB family protein; COG1475 Predicted transcriptional regulators; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: CTM_17287
symbol: CTM_17287
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: CTM_17312
symbol: CTM_17312
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme.


ensembl_gene_id: CTM_17367
symbol: CTM_17367
gene_biotype: protein_coding
description:
  Histidine kinase with HAMP domain; COG0642 Signal transduction histidine kinase; membrane associated.


ensembl_gene_id: CTM_17382
symbol: CTM_17382
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport system inner membrane protein; COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: CTM_17387
symbol: CTM_17387
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport system inner membrane protein; COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: CTM_17402
symbol: CTM_17402
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: CTM_17476
symbol: CTM_17476
gene_biotype: protein_coding
description:
  D-allose transporter subunit; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.


ensembl_gene_id: CTM_17481
symbol: CTM_17481
gene_biotype: protein_coding
description:
  D-allose transporter ATP-binding protein; COG1129 ABC-type sugar transport system, ATPase component.


ensembl_gene_id: CTM_17556
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: CTM_17561
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: CTM_17571
symbol: dapH
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.


ensembl_gene_id: CTM_17611
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: CTM_17621
symbol: fhs
gene_biotype: protein_coding
description:
  Formate--tetrahydrofolate ligase; COG2759 Formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family.


ensembl_gene_id: CTM_17636
symbol: CTM_17636
gene_biotype: protein_coding
description:
  Sodium/glutamate symport carrier protein; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.


ensembl_gene_id: CTM_17671
symbol: CTM_17671
gene_biotype: protein_coding
description:
  Serine/threonine kinase, regulatory protein; COG3629 DNA-binding transcriptional activator of the SARP family.


ensembl_gene_id: CTM_17701
symbol: CTM_17701
gene_biotype: protein_coding
description:
  Sensory transduction protein kinase; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: CTM_17716
symbol: CTM_17716
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.


ensembl_gene_id: CTM_17721
symbol: CTM_17721
gene_biotype: protein_coding
description:
  Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.


ensembl_gene_id: CTM_17736
symbol: atpD-3
gene_biotype: protein_coding
description:
  V-type sodium ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: CTM_17761
symbol: CTM_17761
gene_biotype: protein_coding
description:
  ATPase related protein; COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.


ensembl_gene_id: CTM_17786
symbol: CTM_17786
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.


ensembl_gene_id: CTM_17791
symbol: CTM_17791
gene_biotype: protein_coding
description:
  ABC transporter permease; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.


ensembl_gene_id: CTM_17821
symbol: CTM_17821
gene_biotype: protein_coding
description:
  RNA helicase; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.


ensembl_gene_id: CTM_17836
symbol: CTM_17836
gene_biotype: protein_coding
description:
  Flavin reductase domain-containing protein; COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.


ensembl_gene_id: CTM_17866
symbol: tyrS-2
gene_biotype: protein_coding
description:
  tyrosyl-tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: CTM_17876
symbol: CTM_17876
gene_biotype: protein_coding
description:
  Ribose ABC transporter periplasmic D-ribose-binding protein; COG1879 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: CTM_17886
symbol: rbsA
gene_biotype: protein_coding
description:
  Ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.


ensembl_gene_id: CTM_17896
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: CTM_17926
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: CTM_18051
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: CTM_18056
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: CTM_18061
symbol: hppA
gene_biotype: protein_coding
description:
  Membrane-bound proton-translocating pyrophosphatase; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.


ensembl_gene_id: CTM_18066
symbol: CTM_18066
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: CTM_18071
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: CTM_18081
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: CTM_18091
symbol: CTM_18091
gene_biotype: protein_coding
description:
  COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: CTM_18096
symbol: CTM_18096
gene_biotype: protein_coding
description:
  Central glycolytic genes regulator; COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain.


ensembl_gene_id: CTM_18106
symbol: CTM_18106
gene_biotype: protein_coding
description:
  COG1079 Uncharacterized ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CTM_18111
symbol: CTM_18111
gene_biotype: protein_coding
description:
  COG4603 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CTM_18116
symbol: CTM_18116
gene_biotype: protein_coding
description:
  Sugar ABC transporter ATP-binding protein; COG3845 ABC-type uncharacterized transport systems, ATPase components.


ensembl_gene_id: CTM_18121
symbol: CTM_18121
gene_biotype: protein_coding
description:
  Membrane lipoprotein tmpC precursor; COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.


ensembl_gene_id: CTM_18131
symbol: CTM_18131
gene_biotype: protein_coding
description:
  tRNA (cytosine34-2'-O-)-methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: CTM_18161
symbol: CTM_18161
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).


ensembl_gene_id: CTM_18181
symbol: CTM_18181
gene_biotype: protein_coding
description:
  L-fuculose-phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.


ensembl_gene_id: CTM_18186
symbol: mtnA
gene_biotype: protein_coding
description:
  Translation initiation factor 2B subunit I; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: CTM_18206
symbol: cinA
gene_biotype: protein_coding
description:
  Competence damage-inducible protein A; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.


ensembl_gene_id: CTM_18216
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: CTM_18236
symbol: CTM_18236
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0031 Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: CTM_18266
symbol: CTM_18266
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--serine O-phosphatidyltransferase; COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: CTM_18355
symbol: pepT
gene_biotype: protein_coding
description:
  Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: CTM_18385
symbol: cobU
gene_biotype: protein_coding
description:
  Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase.


ensembl_gene_id: CTM_18390
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: CTM_18395
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: CTM_18400
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: CTM_18405
symbol: CTM_18405
gene_biotype: protein_coding
description:
  Aminotransferase cobD; COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.


ensembl_gene_id: CTM_18410
symbol: cbiM
gene_biotype: protein_coding
description:
  Cobalt transport protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.


ensembl_gene_id: CTM_18415
symbol: cbiN
gene_biotype: protein_coding
description:
  Cobalt transport protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.


ensembl_gene_id: CTM_18425
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: CTM_18435
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.


ensembl_gene_id: CTM_18455
symbol: cbiA
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: CTM_18465
symbol: cbiD
gene_biotype: protein_coding
description:
  cobalt-precorrin-6A synthase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.


ensembl_gene_id: CTM_18475
symbol: CTM_18475
gene_biotype: protein_coding
description:
  Cobalt-precorrin-2 C(20)-methyltransferase; Methylates cobalt-precorrin-2 at the C-20 position to produce cobalt-precorrin-3A in the anaerobic cobalamin biosynthesis pathway.


ensembl_gene_id: CTM_18510
symbol: CTM_18510
gene_biotype: protein_coding
description:
  cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; COG2109 ATP:corrinoid adenosyltransferase.


ensembl_gene_id: CTM_18530
symbol: CTM_18530
gene_biotype: protein_coding
description:
  Surface/cell-adhesion protein/N-acetylmuramoyl-L-alanine amidase; COG2247 Putative cell wall-binding domain.


ensembl_gene_id: CTM_18570
symbol: CTM_18570
gene_biotype: protein_coding
description:
  PAS modulated Fis family sigma-54-specific transcriptional regulator; COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: CTM_18590
symbol: CTM_18590
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase C-terminal domain-containing protein; COG0422 Thiamine biosynthesis protein ThiC.


ensembl_gene_id: CTM_18605
symbol: CTM_18605
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase.


ensembl_gene_id: CTM_18620
symbol: CTM_18620
gene_biotype: protein_coding
description:
  COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.


ensembl_gene_id: CTM_18635
symbol: CTM_18635
gene_biotype: protein_coding
description:
  PAS sensor protein; COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: CTM_18670
symbol: CTM_18670
gene_biotype: protein_coding
description:
  Cystine/glutamine-binding periplasmic protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: CTM_18675
symbol: CTM_18675
gene_biotype: protein_coding
description:
  Cystine/glutamine-binding periplasmic protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: CTM_18680
symbol: CTM_18680
gene_biotype: protein_coding
description:
  Cystine/glutamine permease protein; COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: CTM_18690
symbol: argG
gene_biotype: protein_coding
description:
  COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: CTM_18755
symbol: CTM_18755
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: CTM_18785
symbol: CTM_18785
gene_biotype: protein_coding
description:
  M56 family peptidase; COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component.


ensembl_gene_id: CTM_18884
symbol: CTM_18884
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor family protein; COG1191 DNA-directed RNA polymerase specialized sigma subunit.


ensembl_gene_id: CTM_19019
symbol: CTM_19019
gene_biotype: protein_coding
description:
  PaiA-like polyamine N(1)-acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.


ensembl_gene_id: CTM_19099
symbol: CTM_19099
gene_biotype: protein_coding
description:
  Acetyltransferase family protein; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: CTM_19134
symbol: CTM_19134
gene_biotype: protein_coding
description:
  NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.


ensembl_gene_id: CTM_19159
symbol: CTM_19159
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_19204
symbol: CTM_19204
gene_biotype: protein_coding
description:
  Antibiotic ABC transporter ATP-binding protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: CTM_19269
symbol: CTM_19269
gene_biotype: protein_coding
description:
  CAAX protease self-immunity protein family; COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component.


ensembl_gene_id: CTM_19284
symbol: CTM_19284
gene_biotype: protein_coding
description:
  Bacitracin transport ATP-binding protein BrcA; COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: CTM_19484
symbol: CTM_19484
gene_biotype: protein_coding
description:
  PTS system transporter subunit IICB; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.


ensembl_gene_id: CTM_19499
symbol: CTM_19499
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein/permease; COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: CTM_19634
symbol: CTM_19634
gene_biotype: protein_coding
description:
  Sodium- and chloride-dependent transporter, tyrosine transporter; COG0733 Na+-dependent transporters of the SNF family.


ensembl_gene_id: CTM_19684
symbol: CTM_19684
gene_biotype: protein_coding
description:
  Diacetylchitobiose-6-phosphate hydrolase; COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.


ensembl_gene_id: CTM_19699
symbol: CTM_19699
gene_biotype: protein_coding
description:
  Hydrolase/isomerase/hydratase; COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).


ensembl_gene_id: CTM_19719
symbol: CTM_19719
gene_biotype: protein_coding
description:
  Toxic anion resistance family protein; COG3853 Uncharacterized protein involved in tellurite resistance; Belongs to the TelA family.


ensembl_gene_id: CTM_19739
symbol: CTM_19739
gene_biotype: protein_coding
description:
  COG4512 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide.


ensembl_gene_id: CTM_19764
symbol: CTM_19764
gene_biotype: protein_coding
description:
  Tellurium resistance protein terD; COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1.


ensembl_gene_id: CTM_19774
symbol: CTM_19774
gene_biotype: protein_coding
description:
  Tellurium resistance protein terE; COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1.


ensembl_gene_id: CTM_19864
symbol: dbpA
gene_biotype: protein_coding
description:
  ATP-dependent RNA helicase DbpA; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes.


ensembl_gene_id: CTM_19934
symbol: CTM_19934
gene_biotype: protein_coding
description:
  Peptidase dimerization protein; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: CTM_19964
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: CTM_19969
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: CTM_19979
symbol: recF
gene_biotype: protein_coding
description:
  Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: CTM_19989
symbol: CTM_19989
gene_biotype: protein_coding
description:
  DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of  [...]


ensembl_gene_id: CTM_19994
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: CTM_20004
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: CTM_20009
symbol: CTM_20009
gene_biotype: protein_coding
description:
  Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: CTM_20024
symbol: trmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: CTM_20029
symbol: mnmG
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: CTM_20034
symbol: gidB
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: CTM_20039
symbol: CTM_20039
gene_biotype: protein_coding
description:
  Stage 0 sporulation protein J; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.


ensembl_gene_id: CTM_20084
symbol: CTM_20084
gene_biotype: protein_coding
description:
  COG0425 Predicted redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: CTM_20114
symbol: rpsR
gene_biotype: protein_coding
description:
  30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: CTM_20129
symbol: CTM_20129
gene_biotype: protein_coding
description:
  Signaling protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.


ensembl_gene_id: CTM_20144
symbol: CTM_20144
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: CTM_20149
symbol: CTM_20149
gene_biotype: protein_coding
description:
  Heat shock protein; COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: CTM_20196
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated Cas2 family protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: CTM_20211
symbol: CTM_20211
gene_biotype: protein_coding
description:
  CRISPR-associated Cas4 family protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: CTM_20306
symbol: cobB
gene_biotype: protein_coding
description:
  NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.


ensembl_gene_id: CTM_20376
symbol: rsmI
gene_biotype: protein_coding
description:
  uroporphyrin-III C/tetrapyrrole methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: CTM_20391
symbol: tal
gene_biotype: protein_coding
description:
  Translaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: CTM_20401
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: CTM_20431
symbol: CTM_20431
gene_biotype: protein_coding
description:
  Sodium- and chloride-dependent transporter, TnaT; COG0733 Na+-dependent transporters of the SNF family; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.


ensembl_gene_id: CTM_20436
symbol: CTM_20436
gene_biotype: protein_coding
description:
  COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: CTM_20491
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: CTM_20511
symbol: rnmV
gene_biotype: protein_coding
description:
  DNA primase; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.


ensembl_gene_id: CTM_20516
symbol: ksgA
gene_biotype: protein_coding
description:
  16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: CTM_20551
symbol: flgB
gene_biotype: protein_coding
description:
  Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: CTM_20566
symbol: fliF
gene_biotype: protein_coding
description:
  Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: CTM_20596
symbol: CTM_20596
gene_biotype: protein_coding
description:
  Basal-body rod modification protein flgD; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: CTM_20626
symbol: CTM_20626
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: CTM_20636
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: CTM_20641
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: CTM_20646
symbol: CTM_20646
gene_biotype: protein_coding
description:
  Bifunctional flagellar biosynthesis protein FliR/FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: CTM_20651
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: CTM_20671
symbol: CTM_20671
gene_biotype: protein_coding
description:
  RNA polymerase sigma 28 subunit FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: CTM_20771
symbol: CTM_20771
gene_biotype: protein_coding
description:
  Sulfatase; COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.


ensembl_gene_id: CTM_20781
symbol: CTM_20781
gene_biotype: protein_coding
description:
  Thiaminase II; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4- amino-5-aminomethyl-2-methylpyrimidine to 4-amino-5-hydroxymethyl-2- methylpyrimidine (HMP); Belongs to the TenA family.


ensembl_gene_id: CTM_20876
symbol: CTM_20876
gene_biotype: protein_coding
description:
  COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1.


ensembl_gene_id: CTM_20901
symbol: CTM_20901
gene_biotype: protein_coding
description:
  MRP protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: CTM_20926
symbol: CTM_20926
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.


ensembl_gene_id: CTM_20951
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: CTM_20966
symbol: fusA
gene_biotype: protein_coding
description:
  Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: CTM_20971
symbol: rpsG
gene_biotype: protein_coding
description:
  30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: CTM_20976
symbol: rpsL
gene_biotype: protein_coding
description:
  30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: CTM_20986
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: CTM_20996
symbol: rplL
gene_biotype: protein_coding
description:
  50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: CTM_21001
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: CTM_21006
symbol: rplA
gene_biotype: protein_coding
description:
  50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: CTM_21011
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: CTM_21016
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: CTM_21041
symbol: CTM_21041
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: CTM_21071
symbol: CTM_21071
gene_biotype: protein_coding
description:
  Putative multidrug export ATP-binding/permease protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: CTM_21116
symbol: CTM_21116
gene_biotype: protein_coding
description:
  Putative nitroimidazole resistance protein NimA; COG3467 Predicted flavin-nucleotide-binding protein.


ensembl_gene_id: CTM_21131
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: CTM_21136
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase HisD; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: CTM_21141
symbol: hisC
gene_biotype: protein_coding
description:
  COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: CTM_21151
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: CTM_21156
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase.


ensembl_gene_id: CTM_21161
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: CTM_21166
symbol: hisI
gene_biotype: protein_coding
description:
  Bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; COG0139 Phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family.


ensembl_gene_id: CTM_21191
symbol: CTM_21191
gene_biotype: protein_coding
description:
  Stage V sporulation protein D; COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component.


ensembl_gene_id: CTM_21271
symbol: CTM_21271
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: CTM_21276
symbol: CTM_21276
gene_biotype: protein_coding
description:
  Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: CTM_21281
symbol: CTM_21281
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase; COG1032 Fe-S oxidoreductase.


ensembl_gene_id: CTM_21413
symbol: ldh
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.


ensembl_gene_id: CTM_21498
symbol: CTM_21498
gene_biotype: protein_coding
description:
  Multi antimicrobial extrusion protein (Na(+)/drug antiporter); COG0534 Na+-driven multidrug efflux pump; MATE family of MDR efflux pumps.


ensembl_gene_id: CTM_21533
symbol: kptA
gene_biotype: protein_coding
description:
  RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.


ensembl_gene_id: CTM_21678
symbol: CTM_21678
gene_biotype: protein_coding
description:
  COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Belongs to the sigma-70 factor family.


ensembl_gene_id: CTM_21888
symbol: CTM_21888
gene_biotype: protein_coding
description:
  COG0136 Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: CTM_21903
symbol: CTM_21903
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.


ensembl_gene_id: CTM_21908
symbol: CTM_21908
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.


ensembl_gene_id: CTM_21953
symbol: CTM_21953
gene_biotype: protein_coding
description:
  COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; overlaps another CDS with the same product name.


ensembl_gene_id: CTM_22223
symbol: CTM_22223
gene_biotype: protein_coding
description:
  RNA-directed DNA polymerase; COG3344 Retron-type reverse transcriptase; overlaps another CDS with the same product name.


ensembl_gene_id: CTM_22389
symbol: gidB-2
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase GidB; COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division.


ensembl_gene_id: CTM_22394
symbol: CTM_22394
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division.


ensembl_gene_id: CTM_22454
symbol: gyrB-2
gene_biotype: protein_coding
description:
  DNA gyrase subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.


ensembl_gene_id: CTM_22466
symbol: CTM_22466
gene_biotype: protein_coding
description:
  PAS/PAC sensor-containing diguanylate cyclase; COG3322 Predicted periplasmic ligand-binding sensor domain.


ensembl_gene_id: CTM_22566
symbol: cheB-2
gene_biotype: protein_coding
description:
  Chemotaxis-specific protein-glutamate methyltransferase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: CTM_22581
symbol: CTM_22581
gene_biotype: protein_coding
description:
  Chemotaxis protein response regulator CheY1; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: CTM_22606
symbol: CTM_22606
gene_biotype: protein_coding
description:
  COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: CTM_22616
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: CTM_22661
symbol: CTM_22661
gene_biotype: protein_coding
description:
  Iron-regulated elongation factor Tu Tuf-like protein; COG0050 GTPases - translation elongation factors.


ensembl_gene_id: CTM_22926
symbol: CTM_22926
gene_biotype: protein_coding
description:
  Cardiolipin synthetase 2; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.


ensembl_gene_id: CTM_23122
symbol: CTM_23122
gene_biotype: protein_coding
description:
  Cell wall biogenesis regulatory protein; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis.


ensembl_gene_id: CTM_23267
symbol: CTM_23267
gene_biotype: protein_coding
description:
  Sodium pump decarboxylase, gamma subunit; COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit.


ensembl_gene_id: CTM_23579
symbol: CTM_23579
gene_biotype: protein_coding
description:
  Oligopeptide transport ATP-binding protein AppD; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.


ensembl_gene_id: CTM_23584
symbol: CTM_23584
gene_biotype: protein_coding
description:
  Oligopeptide transport ATP-binding protein AppF; COG4608 ABC-type oligopeptide transport system, ATPase component.


ensembl_gene_id: CTM_23689
symbol: CTM_23689
gene_biotype: protein_coding
description:
  Aminobenzoyl-glutamate utilization protein B; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.


ensembl_gene_id: CTM_23814
symbol: CTM_23814
gene_biotype: protein_coding
description:
  3-oxoacyl-ACP reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: CTM_23829
symbol: fabZ-2
gene_biotype: protein_coding
description:
  (3R)-hydroxymyristoyl-ACP dehydratase; COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases.


ensembl_gene_id: CTM_23864
symbol: anmK-2
gene_biotype: protein_coding
description:
  anhydro-N-acetylmuramic acid kinase; COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases.


ensembl_gene_id: CTM_24171
symbol: CTM_24171
gene_biotype: protein_coding
description:
  iron(III) dicitrate ABC transporter; COG0609 ABC-type Fe3+-siderophore transport system, permease component.


ensembl_gene_id: CTM_24181
symbol: murD-2
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase.


ensembl_gene_id: CTM_24438
symbol: CTM_24438
gene_biotype: protein_coding
description:
  Ribose transport ATP-binding protein rbsA; COG1129 ABC-type sugar transport system, ATPase component.


ensembl_gene_id: CTM_24663
symbol: CTM_24663
gene_biotype: protein_coding
description:
  N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; COG2890 Methylase of polypeptide chain release factors.


ensembl_gene_id: CTM_24795
symbol: CTM_24795
gene_biotype: protein_coding
description:
  COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: CTM_25065
symbol: CTM_25065
gene_biotype: protein_coding
description:
  Bile acid-inducible operon protein F; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase.


ensembl_gene_id: CTM_25070
symbol: CTM_25070
gene_biotype: protein_coding
description:
  Branched chain amino acid transport system II carrier protein; COG1114 Branched-chain amino acid permeases.


ensembl_gene_id: CTM_25389
symbol: CTM_25389
gene_biotype: protein_coding
description:
  Chemotaxis-specific protein-glutamate methyltransferase; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.


ensembl_gene_id: CTM_25454
symbol: glmU-2
gene_biotype: protein_coding
description:
  COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains).


ensembl_gene_id: CTM_25459
symbol: CTM_25459
gene_biotype: protein_coding
description:
  Regulatory protein SpoVG; COG2088 Uncharacterized protein, involved in the regulation of septum location.


ensembl_gene_id: CTM_25586
symbol: CTM_25586
gene_biotype: protein_coding
description:
  COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).


ensembl_gene_id: CTM_25631
symbol: CTM_25631
gene_biotype: protein_coding
description:
  Branched chain amino acid ABC transporter permease; COG4603 ABC-type uncharacterized transport system, permease component.


ensembl_gene_id: CTM_25651
symbol: CTM_25651
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; COG0044 Dihydroorotase and related cyclic amidohydrolases.


ensembl_gene_id: CTM_25923
symbol: CTM_25923
gene_biotype: protein_coding
description:
  iron(III)-transport ATP-binding protein sfuC; COG3839 ABC-type sugar transport systems, ATPase components.


ensembl_gene_id: CTM_25938
symbol: ipk-2
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase.


ensembl_gene_id: CTM_25993
symbol: CTM_25993
gene_biotype: protein_coding
description:
  Iron ABC transporter permease; COG0609 ABC-type Fe3+-siderophore transport system, permease component.


ensembl_gene_id: CTM_26083
symbol: CTM_26083
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system II carrier protein; COG1114 Branched-chain amino acid permeases.


ensembl_gene_id: CTM_26177
symbol: CTM_26177
gene_biotype: protein_coding
description:
  Putative Serine/threonine kinase, regulatory protein; COG3629 DNA-binding transcriptional activator of the SARP family.


ensembl_gene_id: CTM_26207
symbol: CTM_26207
gene_biotype: protein_coding
description:
  PTS system lactose/cellobiose family transporter subunit IIC; COG1455 Phosphotransferase system cellobiose-specific component IIC.


ensembl_gene_id: CTM_26272
symbol: CTM_26272
gene_biotype: protein_coding
description:
  Inner-membrane translocator; COG0559 Branched-chain amino acid ABC-type transport system, permease components.


ensembl_gene_id: CTM_26735
symbol: CTM_26735
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; COG0300 Short-chain dehydrogenases of various substrate specificities.


