# pathwayInfo

id: PF04392
description: ABC transporter substrate binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04392
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04392_ABC_transporter_substrate_binding_protein


id: PF04422
description: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04422
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04422_Coenzyme_F420_hydrogenase/dehydrogenase,_beta_subunit_N-term


id: PF04432
description: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04432
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04432_Coenzyme_F420_hydrogenase/dehydrogenase,_beta_subunit_C_terminus


id: PF04464
description: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04464
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04464_CDP-Glycerol:Poly(glycerophosphate)_glycerophosphotransferase_


id: PF04488
description: Glycosyltransferase sugar-binding region containing DXD motif
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04488
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04488_Glycosyltransferase_sugar-binding_region_containing_DXD_motif___


id: PF04657
description: Putative inner membrane exporter, YdcZ
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04657
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04657_Putative_inner_membrane_exporter,_YdcZ_


id: PF04715
description: Anthranilate synthase component I, N terminal region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04715
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04715_Anthranilate_synthase_component_I,_N_terminal_region


id: PF04760
description: Translation initiation factor IF-2, N-terminal region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04760
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04760_Translation_initiation_factor_IF-2,_N-terminal_region


id: PF04816
description: tRNA (adenine(22)-N(1))-methyltransferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04816
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04816_tRNA_(adenine(22)-N(1))-methyltransferase


id: PF04952
description: Succinylglutamate desuccinylase / Aspartoacylase family
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04952
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF04952_Succinylglutamate_desuccinylase_/_Aspartoacylase_family


id: PF05173
description: Dihydrodipicolinate reductase, C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05173
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05173_Dihydrodipicolinate_reductase,_C-terminus


id: PF05198
description: Translation initiation factor IF-3, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05198
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05198_Translation_initiation_factor_IF-3,_N-terminal_domain


id: PF05201
description: Glutamyl-tRNAGlu reductase, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05201
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05201_Glutamyl-tRNAGlu_reductase,_N-terminal_domain


id: PF05362
description: Lon protease (S16) C-terminal proteolytic domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05362
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05362_Lon_protease_(S16)_C-terminal_proteolytic_domain


id: PF05389
description: Negative regulator of genetic competence (MecA)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05389
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05389_Negative_regulator_of_genetic_competence_(MecA)


id: PF05402
description: Coenzyme PQQ synthesis protein D (PqqD)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05402
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05402_Coenzyme_PQQ_synthesis_protein_D_(PqqD)


id: PF05437
description: Branched-chain amino acid transport protein (AzlD)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05437
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05437_Branched-chain_amino_acid_transport_protein_(AzlD)


id: PF05698
description: Bacterial trigger factor protein (TF) C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05698
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05698_Bacterial_trigger_factor_protein_(TF)_C-terminus


id: PF05960
description: Bacterial protein of unknown function (DUF885)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05960
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05960_Bacterial_protein_of_unknown_function_(DUF885)


id: PF05979
description: Bacterial protein of unknown function (DUF896)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05979
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF05979_Bacterial_protein_of_unknown_function_(DUF896)


id: PF06026
description: Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06026
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06026_Ribose_5-phosphate_isomerase_A_(phosphoriboisomerase_A)


id: PF06050
description: 2-hydroxyglutaryl-CoA dehydratase, D-component
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06050
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06050_2-hydroxyglutaryl-CoA_dehydratase,_D-component_


id: PF06107
description: Bacterial protein of unknown function (DUF951)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06107
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06107_Bacterial_protein_of_unknown_function_(DUF951)


id: PF06125
description: Bacterial protein of unknown function (DUF961)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06125
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06125_Bacterial_protein_of_unknown_function_(DUF961)


id: PF06133
description: Control of competence regulator ComK, YlbF/YmcA
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06133
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06133_Control_of_competence_regulator_ComK,_YlbF/YmcA


id: PF06325
description: Ribosomal protein L11 methyltransferase (PrmA)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06325
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06325_Ribosomal_protein_L11_methyltransferase_(PrmA)


id: PF06415
description: BPG-independent PGAM N-terminus (iPGM_N)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06415
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06415_BPG-independent_PGAM_N-terminus_(iPGM_N)


id: PF06686
description: Stage III sporulation protein AC/AD protein family
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06686
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06686_Stage_III_sporulation_protein_AC/AD_protein_family


id: PF06769
description: YoeB-like toxin of bacterial type II toxin-antitoxin system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06769
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06769_YoeB-like_toxin_of_bacterial_type_II_toxin-antitoxin_system


id: PF06898
description: Putative stage IV sporulation protein YqfD
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06898
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06898_Putative_stage_IV_sporulation_protein_YqfD


id: PF06923
description: Glucitol operon activator protein (GutM)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06923
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06923_Glucitol_operon_activator_protein_(GutM)


id: PF06970
description: Replication initiator protein A (RepA) N-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06970
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06970_Replication_initiator_protein_A_(RepA)_N-terminus


id: PF06971
description: Putative DNA-binding protein N-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06971
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF06971_Putative_DNA-binding_protein_N-terminus


id: PF07155
description: ECF-type riboflavin transporter, S component
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07155
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07155_ECF-type_riboflavin_transporter,_S_component


id: PF07221
description: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07221
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07221_N-acylglucosamine_2-epimerase_(GlcNAc_2-epimerase)


id: PF07261
description: Replication initiation and membrane attachment
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07261
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07261_Replication_initiation_and_membrane_attachment


id: PF07282
description: Putative transposase DNA-binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07282
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07282_Putative_transposase_DNA-binding_domain


id: PF07441
description: SigmaK-factor processing regulatory protein BofA
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07441
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07441_SigmaK-factor_processing_regulatory_protein_BofA


id: PF07451
description: Stage V sporulation protein AD (SpoVAD)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07451
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07451_Stage_V_sporulation_protein_AD_(SpoVAD)


id: PF07454
description: Stage II sporulation protein P (SpoIIP)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07454
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07454_Stage_II_sporulation_protein_P_(SpoIIP)


id: PF07456
description: Heptaprenyl diphosphate synthase component I
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07456
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07456_Heptaprenyl_diphosphate_synthase_component_I


id: PF07479
description: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07479
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07479_NAD-dependent_glycerol-3-phosphate_dehydrogenase_C-terminus


id: PF07498
description: Rho termination factor, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07498
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07498_Rho_termination_factor,_N-terminal_domain


id: PF07521
description: Zn-dependent metallo-hydrolase RNA specificity domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07521
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07521_Zn-dependent_metallo-hydrolase_RNA_specificity_domain


id: PF07663
description: Sorbitol phosphotransferase enzyme II C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07663
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07663_Sorbitol_phosphotransferase_enzyme_II_C-terminus


id: PF07664
description: Ferrous iron transport protein B C terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07664
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07664_Ferrous_iron_transport_protein_B_C_terminus


id: PF07669
description: Eco57I restriction-modification methylase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07669
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07669_Eco57I_restriction-modification_methylase


id: PF07685
description: CobB/CobQ-like glutamine amidotransferase domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07685
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07685_CobB/CobQ-like_glutamine_amidotransferase_domain


id: PF07733
description: Bacterial DNA polymerase III alpha NTPase domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07733
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07733_Bacterial_DNA_polymerase_III_alpha_NTPase_domain


id: PF07905
description: Purine catabolism regulatory protein-like family
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07905
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07905_Purine_catabolism_regulatory_protein-like_family


id: PF07943
description: Penicillin-binding protein 5, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07943
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07943_Penicillin-binding_protein_5,_C-terminal_domain


id: PF07992
description: Pyridine nucleotide-disulphide oxidoreductase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07992
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF07992_Pyridine_nucleotide-disulphide_oxidoreductase


id: PF08028
description: Acyl-CoA dehydrogenase, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08028
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08028_Acyl-CoA_dehydrogenase,_C-terminal_domain


id: PF08125
description: Mannitol dehydrogenase C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08125
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08125_Mannitol_dehydrogenase_C-terminal_domain


id: PF08207
description: Elongation factor P (EF-P) KOW-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08207
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08207_Elongation_factor_P_(EF-P)_KOW-like_domain


id: PF08240
description: Alcohol dehydrogenase GroES-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08240
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08240_Alcohol_dehydrogenase_GroES-like_domain


id: PF08264
description: Anticodon-binding domain of tRNA ligase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08264
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08264_Anticodon-binding_domain_of_tRNA_ligase


id: PF08275
description: DNA primase catalytic core, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08275
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08275_DNA_primase_catalytic_core,_N-terminal_domain


id: PF08379
description: Bacterial transglutaminase-like N-terminal region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08379
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08379_Bacterial_transglutaminase-like_N-terminal_region


id: PF08388
description: Group II intron, maturase-specific domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08388
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08388_Group_II_intron,_maturase-specific_domain


id: PF08501
description: Shikimate dehydrogenase substrate binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08501
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08501_Shikimate_dehydrogenase_substrate_binding_domain


id: PF08541
description: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08541
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08541_3-Oxoacyl-[acyl-carrier-protein_(ACP)]_synthase_III_C_terminal__


id: PF08545
description: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08545
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08545_3-Oxoacyl-[acyl-carrier-protein_(ACP)]_synthase_III


id: PF08546
description: Ketopantoate reductase PanE/ApbA C terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08546
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08546_Ketopantoate_reductase_PanE/ApbA_C_terminal


id: PF08660
description: Oligosaccharide biosynthesis protein Alg14 like
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08660
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08660_Oligosaccharide_biosynthesis_protein_Alg14_like


id: PF08769
description: Sporulation initiation factor Spo0A C terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08769
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08769_Sporulation_initiation_factor_Spo0A_C_terminal


id: PF08817
description: WXG100 protein secretion system (Wss), protein YukD
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08817
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF08817_WXG100_protein_secretion_system_(Wss),_protein_YukD


id: PF09157
description: Pseudouridine synthase II TruB, C-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09157
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09157_Pseudouridine_synthase_II_TruB,_C-terminal


id: PF09413
description: Putative prokaryotic signal transducing protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09413
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09413_Putative_prokaryotic_signal_transducing_protein_


id: PF09439
description: Signal recognition particle receptor beta subunit
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09439
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09439_Signal_recognition_particle_receptor_beta_subunit


id: PF09479
description: Listeria-Bacteroides repeat domain (List_Bact_rpt)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09479
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09479_Listeria-Bacteroides_repeat_domain_(List_Bact_rpt)


id: PF09527
description: Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09527
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09527_Putative_F0F1-ATPase_subunit_Ca2+/Mg2+_transporter


id: PF09546
description: Stage III sporulation protein AE (spore_III_AE)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09546
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09546_Stage_III_sporulation_protein_AE_(spore_III_AE)


id: PF09548
description: Stage III sporulation protein AB (spore_III_AB)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09548
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09548_Stage_III_sporulation_protein_AB_(spore_III_AB)


id: PF09551
description: Stage II sporulation protein R (spore_II_R)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09551
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09551_Stage_II_sporulation_protein_R_(spore_II_R)


id: PF09581
description: Stage III sporulation protein AF (Spore_III_AF)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09581
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09581_Stage_III_sporulation_protein_AF_(Spore_III_AF)


id: PF09664
description: Protein of unknown function C-terminus (DUF2399)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09664
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09664_Protein_of_unknown_function_C-terminus_(DUF2399)


id: PF09719
description: Putative redox-active protein (C_GCAxxG_C_C)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09719
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09719_Putative_redox-active_protein_(C_GCAxxG_C_C)


id: PF09822
description: ABC-type uncharacterized transport system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09822
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09822_ABC-type_uncharacterized_transport_system


id: PF09918
description: Uncharacterized protein containing a ferredoxin domain (DUF2148)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09918
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09918_Uncharacterized_protein_containing_a_ferredoxin_domain_(DUF2148)


id: PF09989
description: CoA enzyme activase uncharacterised domain (DUF2229)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09989
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF09989_CoA_enzyme_activase_uncharacterised_domain_(DUF2229)


id: PF10035
description: Uncharacterized protein conserved in bacteria (DUF2179)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10035
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10035_Uncharacterized_protein_conserved_in_bacteria_(DUF2179)


id: PF10040
description: CRISPR-associated endoribonuclease Cas6
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10040
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10040_CRISPR-associated_endoribonuclease_Cas6


id: PF10105
description: Uncharacterized protein conserved in bacteria (DUF2344)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10105
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10105_Uncharacterized_protein_conserved_in_bacteria_(DUF2344)


id: PF10112
description: 5-bromo-4-chloroindolyl phosphate hydrolysis protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10112
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10112_5-bromo-4-chloroindolyl_phosphate_hydrolysis_protein


id: PF10143
description: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10143
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10143_2,3-bisphosphoglycerate-independent_phosphoglycerate_mutase


id: PF10385
description: RNA polymerase beta subunit external 1 domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10385
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10385_RNA_polymerase_beta_subunit_external_1_domain


id: PF10410
description: DnaB-helicase binding domain of primase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10410
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10410_DnaB-helicase_binding_domain_of_primase


id: PF10412
description: Type IV secretion-system coupling protein DNA-binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10412
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10412_Type_IV_secretion-system_coupling_protein_DNA-binding_domain


id: PF10417
description: C-terminal domain of 1-Cys peroxiredoxin
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10417
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10417_C-terminal_domain_of_1-Cys_peroxiredoxin


id: PF10418
description: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10418
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10418_Iron-sulfur_cluster_binding_domain_of_dihydroorotate_dehydrogenase_B


id: PF10509
description: Galactokinase galactose-binding signature
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10509
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10509_Galactokinase_galactose-binding_signature


id: PF10555
description: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10555
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10555_Phospho-N-acetylmuramoyl-pentapeptide-transferase_signature_1_


id: PF10662
description: Ethanolamine utilisation - propanediol utilisation
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10662
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10662_Ethanolamine_utilisation_-_propanediol_utilisation


id: PF10741
description: Type II secretion system (T2SS), protein M subtype b
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10741
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF10741_Type_II_secretion_system_(T2SS),_protein_M_subtype_b


id: PF11007
description: Spore coat associated protein JA (CotJA)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF11007
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF11007_Spore_coat_associated_protein_JA_(CotJA)


id: PF11490
description: DNA polymerase III polC-type N-terminus II
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF11490
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF11490_DNA_polymerase_III_polC-type_N-terminus_II


id: PF11796
description: Protein of unknown function N-terminus (DUF3323)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF11796
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF11796_Protein_of_unknown_function_N-terminus_(DUF3323)


id: PF11799
description: impB/mucB/samB family C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF11799
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF11799_impB/mucB/samB_family_C-terminal_domain


id: PF12169
description: DNA polymerase III subunits gamma and tau domain III
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12169
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF12169_DNA_polymerase_III_subunits_gamma_and_tau_domain_III


id: PF12241
description: Trans-2-enoyl-CoA reductase catalytic region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12241
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF12241_Trans-2-enoyl-CoA_reductase_catalytic_region


id: PF12242
description: NAD(P)H binding domain of trans-2-enoyl-CoA reductase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12242
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF12242_NAD(P)H_binding_domain_of_trans-2-enoyl-CoA_reductase


id: PF12320
description: Type 5 capsule protein repressor C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12320
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF12320_Type_5_capsule_protein_repressor_C-terminal_domain


id: PF12437
description: Glutamine synthetase type III N terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12437
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF12437_Glutamine_synthetase_type_III_N_terminal_


id: PF12627
description: Probable RNA and SrmB- binding site of polymerase A
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12627
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF12627_Probable_RNA_and_SrmB-_binding_site_of_polymerase_A


id: PF12822
description: ECF transporter, substrate-specific component
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12822
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF12822_ECF_transporter,_substrate-specific_component


id: PF12850
description: Calcineurin-like phosphoesterase superfamily domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12850
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF12850_Calcineurin-like_phosphoesterase_superfamily_domain


id: PF13090
description: Polyphosphate kinase C-terminal domain 2
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13090
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13090_Polyphosphate_kinase_C-terminal_domain_2


id: PF13292
description: 1-deoxy-D-xylulose-5-phosphate synthase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13292
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13292_1-deoxy-D-xylulose-5-phosphate_synthase


id: PF13304
description: AAA domain, putative AbiEii toxin, Type IV TA system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13304
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13304_AAA_domain,_putative_AbiEii_toxin,_Type_IV_TA_system


id: PF13306
description: BspA type Leucine rich repeat region (6 copies)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13306
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13306_BspA_type_Leucine_rich_repeat_region_(6_copies)


id: PF13335
description: Magnesium chelatase, subunit ChlI C-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13335
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13335_Magnesium_chelatase,_subunit_ChlI_C-terminal


id: PF13336
description: Acetyl-CoA hydrolase/transferase C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13336
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13336_Acetyl-CoA_hydrolase/transferase_C-terminal_domain


id: PF13377
description: Periplasmic binding protein-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13377
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13377_Periplasmic_binding_protein-like_domain


id: PF13399
description: LytR cell envelope-related transcriptional attenuator
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13399
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13399_LytR_cell_envelope-related_transcriptional_attenuator


id: PF13416
description: Bacterial extracellular solute-binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13416
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13416_Bacterial_extracellular_solute-binding_protein


id: PF13491
description: 4TM region of DNA translocase FtsK/SpoIIIE
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13491
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13491_4TM_region_of_DNA_translocase_FtsK/SpoIIIE


id: PF13495
description: Phage integrase, N-terminal SAM-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13495
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13495_Phage_integrase,_N-terminal_SAM-like_domain


id: PF13510
description: 2Fe-2S iron-sulfur cluster binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13510
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13510_2Fe-2S_iron-sulfur_cluster_binding_domain


id: PF13531
description: Bacterial extracellular solute-binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13531
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13531_Bacterial_extracellular_solute-binding_protein


id: PF13556
description: PucR C-terminal helix-turn-helix domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13556
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13556_PucR_C-terminal_helix-turn-helix_domain


id: PF13597
description: Anaerobic ribonucleoside-triphosphate reductase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13597
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13597_Anaerobic_ribonucleoside-triphosphate_reductase


id: PF13636
description: RNA-binding PUA-like domain of methyltransferase RsmF
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13636
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13636_RNA-binding_PUA-like_domain_of_methyltransferase_RsmF


id: PF13669
description: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13669
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13669_Glyoxalase/Bleomycin_resistance_protein/Dioxygenase_superfamily


id: PF13722
description: 5TM C-terminal transporter carbon starvation CstA
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13722
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13722_5TM_C-terminal_transporter_carbon_starvation_CstA


id: PF13735
description: tRNA nucleotidyltransferase domain 2 putative
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13735
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13735_tRNA_nucleotidyltransferase_domain_2_putative


id: PF13738
description: Pyridine nucleotide-disulphide oxidoreductase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13738
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13738_Pyridine_nucleotide-disulphide_oxidoreductase


id: PF13749
description: Putative ATP-dependent DNA helicase recG C-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13749
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13749_Putative_ATP-dependent_DNA_helicase_recG_C-terminal


id: PF13793
description: N-terminal domain of ribose phosphate pyrophosphokinase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13793
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF13793_N-terminal_domain_of_ribose_phosphate_pyrophosphokinase


id: PF14200
description: Ricin-type beta-trefoil lectin domain-like
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14200
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14200_Ricin-type_beta-trefoil_lectin_domain-like


id: PF14203
description: Putative transposon-transfer assisting protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14203
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14203_Putative_transposon-transfer_assisting_protein


id: PF14480
description: DNA polymerase III polC-type N-terminus I
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14480
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14480_DNA_polymerase_III_polC-type_N-terminus_I


id: PF14572
description: Phosphoribosyl synthetase-associated domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14572
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14572_Phosphoribosyl_synthetase-associated_domain


id: PF14602
description: Hexapeptide repeat of succinyl-transferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14602
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14602_Hexapeptide_repeat_of_succinyl-transferase


id: PF14659
description: Phage integrase, N-terminal SAM-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14659
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14659_Phage_integrase,_N-terminal_SAM-like_domain


id: PF14667
description: Polysaccharide biosynthesis C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14667
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14667_Polysaccharide_biosynthesis_C-terminal_domain


id: PF14691
description: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14691
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14691_Dihydroprymidine_dehydrogenase_domain_II,_4Fe-4S_cluster


id: PF14693
description: Ribosomal protein TL5, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14693
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14693_Ribosomal_protein_TL5,_C-terminal_domain


id: PF14714
description: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14714
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14714_KH-domain-like_of_EngA_bacterial_GTPase_enzymes,_C-terminal


id: PF14748
description: Pyrroline-5-carboxylate reductase dimerisation
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14748
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF14748_Pyrroline-5-carboxylate_reductase_dimerisation


id: PF15714
description: Stage V sporulation protein T C-terminal, transcription factor
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF15714
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF15714_Stage_V_sporulation_protein_T_C-terminal,_transcription_factor


id: PF16198
description: tRNA pseudouridylate synthase B C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16198
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16198_tRNA_pseudouridylate_synthase_B_C-terminal_domain


id: PF16320
description: Ribosomal protein L7/L12 dimerisation domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16320
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16320_Ribosomal_protein_L7/L12_dimerisation_domain


id: PF16321
description: Sigma 54 modulation/S30EA ribosomal protein C terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16321
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16321_Sigma_54_modulation/S30EA_ribosomal_protein_C_terminus


id: PF16654
description: Diaminopimelic acid dehydrogenase C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16654
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16654_Diaminopimelic_acid_dehydrogenase_C-terminal_domain


id: PF16656
description: Purple acid Phosphatase, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16656
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16656_Purple_acid_Phosphatase,_N-terminal_domain


id: PF16658
description: Class II release factor RF3, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16658
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16658_Class_II_release_factor_RF3,_C-terminal_domain


id: PF16874
description: Glycosyl hydrolase family 36 C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16874
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16874_Glycosyl_hydrolase_family_36_C-terminal_domain


id: PF16875
description: Glycosyl hydrolase family 36 N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16875
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16875_Glycosyl_hydrolase_family_36_N-terminal_domain


id: PF16916
description: Dimerisation domain of Zinc Transporter
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16916
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16916_Dimerisation_domain_of_Zinc_Transporter


id: PF16917
description: Biotin/lipoate A/B protein ligase family
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16917
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16917_Biotin/lipoate_A/B_protein_ligase_family


id: PF16924
description: Dipicolinate synthase subunit A N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16924
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF16924_Dipicolinate_synthase_subunit_A_N-terminal_domain


id: PF17125
description: N-terminal domain of 16S rRNA methyltransferase RsmF
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17125
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF17125_N-terminal_domain_of_16S_rRNA_methyltransferase_RsmF


id: PF17126
description: RsmF rRNA methyltransferase first C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17126
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF17126_RsmF_rRNA_methyltransferase_first_C-terminal_domain


id: PF17136
description: Ribosomal proteins 50S L24/mitochondrial 39S L24
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17136
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF17136_Ribosomal_proteins_50S_L24/mitochondrial_39S_L24


id: PF17147
description: Pyruvate:ferredoxin oxidoreductase core domain II
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17147
name:
  Protein Domains (Pfam).STRING_v12.0_1261637_STRINGid_PF17147_Pyruvate:ferredoxin_oxidoreductase_core_domain_II


id: SM00034
description: C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00034
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00034_C-type_lectin_(CTL)_or_carbohydrate-recognition_domain_(CRD)


id: SM00042
description: Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00042
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00042_Domain_first_found_in_C1r,_C1s,_uEGF,_and_bone_morphogenetic_protein.


id: SM00046
description: Diacylglycerol kinase catalytic domain (presumed)
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00046
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00046_Diacylglycerol_kinase_catalytic_domain_(presumed)


id: SM00062
description: Bacterial periplasmic substrate-binding proteins
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00062
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00062_Bacterial_periplasmic_substrate-binding_proteins


id: SM00065
description: Domain present in phytochromes and cGMP-specific phosphodiesterases.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00065
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00065_Domain_present_in_phytochromes_and_cGMP-specific_phosphodiesterases.


id: SM00100
description: Cyclic nucleotide-monophosphate binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00100
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00100_Cyclic_nucleotide-monophosphate_binding_domain


id: SM00116
description: Domain in cystathionine beta-synthase and other proteins.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00116
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00116_Domain_in_cystathionine_beta-synthase_and_other_proteins.


id: SM00220
description: Serine/Threonine protein kinases, catalytic domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00220
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00220_Serine/Threonine_protein_kinases,_catalytic_domain


id: SM00226
description: Low molecular weight phosphatase family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00226
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00226_Low_molecular_weight_phosphatase_family


id: SM00228
description: Domain present in PSD-95, Dlg, and ZO-1/2.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00228
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00228_Domain_present_in_PSD-95,_Dlg,_and_ZO-1/2.


id: SM00271
description: DnaJ molecular chaperone homology domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00271
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00271_DnaJ_molecular_chaperone_homology_domain


id: SM00278
description: Helix-hairpin-helix DNA-binding motif class 1
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00278
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00278_Helix-hairpin-helix_DNA-binding_motif_class_1


id: SM00279
description: Helix-hairpin-helix class 2 (Pol1 family) motifs
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00279
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00279_Helix-hairpin-helix_class_2_(Pol1_family)_motifs


id: SM00304
description: HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00304
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00304_HAMP_(Histidine_kinases,_Adenylyl_cyclases,_Methyl_binding_proteins,_Phosphatases)_domain


id: SM00316
description: Ribosomal protein S1-like RNA-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00316
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00316_Ribosomal_protein_S1-like_RNA-binding_domain


id: SM00327
description: Von Willebrand factor (vWF) type A domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00327
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00327_Von_Willebrand_factor_(vWF)_type_A_domain


id: SM00342
description: Helix_turn_helix, arabinose operon control protein
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00342
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00342_Helix_turn_helix,_arabinose_operon_control_protein


id: SM00345
description: Helix_turn_helix gluconate operon transcriptional repressor
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00345
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00345_Helix_turn_helix_gluconate_operon_transcriptional_repressor


id: SM00347
description: Helix_turn_helix multiple antibiotic resistance protein
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00347
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00347_Helix_turn_helix_multiple_antibiotic_resistance_protein


id: SM00354
description: Helix_turn _helix lactose operon repressor
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00354
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00354_Helix_turn__helix_lactose_operon_repressor


id: SM00382
description: ATPases associated with a variety of cellular activities
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00382
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00382_ATPases_associated_with_a_variety_of_cellular_activities


id: SM00393
description: Putative single-stranded nucleic acids-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00393
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00393_Putative_single-stranded_nucleic_acids-binding_domain


id: SM00411
description: Bacterial (prokaryotic) histone like domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00411
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00411_Bacterial_(prokaryotic)_histone_like_domain


id: SM00413
description: Erythroblast transformation specific domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00413
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00413_Erythroblast_transformation_specific_domain


id: SM00418
description: Helix_turn_helix, Arsenical Resistance Operon Repressor
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00418
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00418_Helix_turn_helix,_Arsenical_Resistance_Operon_Repressor


id: SM00419
description: Helix_turn_helix, cAMP Regulatory protein
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00419
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00419_Helix_turn_helix,_cAMP_Regulatory_protein


id: SM00420
description: Helix_turn_helix, Deoxyribose operon repressor
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00420
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00420_Helix_turn_helix,_Deoxyribose_operon_repressor


id: SM00436
description: Bacterial DNA topoisomeraes I ATP-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00436
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00436_Bacterial_DNA_topoisomeraes_I_ATP-binding_domain


id: SM00437
description: Bacterial DNA topoisomerase I DNA-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00437
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00437_Bacterial_DNA_topoisomerase_I_DNA-binding_domain


id: SM00460
description: Transglutaminase/protease-like homologues
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00460
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00460_Transglutaminase/protease-like_homologues


id: SM00464
description: Found in ATP-dependent protease La (LON)
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00464
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00464_Found_in_ATP-dependent_protease_La_(LON)


id: SM00471
description: Metal dependent phosphohydrolases with conserved HD motif.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00471
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00471_Metal_dependent_phosphohydrolases_with_conserved_HD_motif.


id: SM00479
description: Exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00479
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00479_Exonuclease_domain_in_DNA-polymerase_alpha_and_epsilon_chain,_ribonuclease_T_and_other_exonucleases


id: SM00481
description: DNA polymerase alpha chain like domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00481
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00481_DNA_polymerase_alpha_chain_like_domain


id: SM00490
description: Helicase superfamily c-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00490
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00490_Helicase_superfamily_c-terminal_domain


id: SM00493
description: Topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00493
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00493_Topoisomerases,_DnaG-type_primases,_OLD_family_nucleases_and_RecR_proteins


id: SM00525
description: Iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3)
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00525
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00525_Iron-sulpphur_binding_domain_in_DNA-(apurinic_or_apyrimidinic_site)_lyase_(subfamily_of_ENDO3)


id: SM00530
description: Helix-turn-helix XRE-family like proteins
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00530
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00530_Helix-turn-helix_XRE-family_like_proteins


id: SM00533
description: DNA-binding domain of DNA mismatch repair MUTS family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00533
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00533_DNA-binding_domain_of_DNA_mismatch_repair_MUTS_family


id: SM00534
description: ATPase domain of DNA mismatch repair MUTS family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00534
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00534_ATPase_domain_of_DNA_mismatch_repair_MUTS_family


id: SM00729
description: Elongator protein 3, MiaB family, Radical SAM
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00729
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00729_Elongator_protein_3,_MiaB_family,_Radical_SAM


id: SM00732
description: Likely ribonuclease with RNase H fold.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00732
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00732_Likely_ribonuclease_with_RNase_H_fold.


id: SM00738
description: In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00738
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00738_In_Spt5p,_this_domain_may_confer_affinity_for_Spt4p._It_possesses_a_RNP-like_fold.


id: SM00739
description: KOW (Kyprides, Ouzounis, Woese) motif.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00739
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00739_KOW_(Kyprides,_Ouzounis,_Woese)_motif.


id: SM00760
description: Bacterial dnaA protein helix-turn-helix domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00760
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00760_Bacterial_dnaA_protein_helix-turn-helix_domain


id: SM00833
description: Cobalamin synthesis protein cobW C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00833
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00833_Cobalamin_synthesis_protein_cobW_C-terminal_domain


id: SM00839
description: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00839
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00839_Glutamate/Leucine/Phenylalanine/Valine_dehydrogenase


id: SM00840
description: This DALR domain is found in cysteinyl-tRNA-synthetases.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00840
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00840_This_DALR_domain_is_found_in_cysteinyl-tRNA-synthetases.


id: SM00843
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00843
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00843_This_domain_directs_oriented_DNA_translocation_and_forms_a_winged_helix_structure._Mutated_proteins_with_substitutions_in_the_FtsK_gamma_DNA-recognition_helix_are_impaired_in_DNA_binding.

description:
  This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


id: SM00846
description: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00846
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00846_Glyceraldehyde_3-phosphate_dehydrogenase,_NAD_binding_domain


id: SM00854
description: Bacterial capsule synthesis protein PGA_cap
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00854
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00854_Bacterial_capsule_synthesis_protein_PGA_cap


id: SM00859
description: Semialdehyde dehydrogenase, NAD binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00859
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00859_Semialdehyde_dehydrogenase,_NAD_binding_domain


id: SM00861
description: Transketolase, pyrimidine binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00861
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00861_Transketolase,_pyrimidine_binding_domain


id: SM00862
description: Transcriptional regulatory protein, C terminal
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00862
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00862_Transcriptional_regulatory_protein,_C_terminal


id: SM00863
description: Threonyl and Alanyl tRNA synthetase second additional domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00863
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00863_Threonyl_and_Alanyl_tRNA_synthetase_second_additional_domain


id: SM00865
description: Tubulin/FtsZ family, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00865
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00865_Tubulin/FtsZ_family,_C-terminal_domain


id: SM00866
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00866
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00866_The_UbiC_transcription_regulator-associated_(UTRA)_domain_is_a_conserved_ligand-binding_domain_that_has_a_similar_fold_to_PUBMED:12757941._It_is_believed_to_modulate_activity_of_bacterial_transcription_factors_in_response_to_binding_small_molecules.

description:
  The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain that has a similar fold to PUBMED:12757941. It is believed to modulate activity of bacterial transcription factors in response to binding small molecules.


id: SM00870
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00870
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00870_Asparaginase,_which_is_found_in_various_plant,_animal_and_bacterial_cells,_catalyses_the_deamination_of_asparagine_to_yield_aspartic_acid_and_an_ammonium_ion,_resulting_in_a_depletion_of_free_circulatory_asparagine_in_plasma_PUBMED:3026924._The_...

description:
  Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The ...


id: SM00871
description: Bacterial transcription activator, effector binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00871
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00871_Bacterial_transcription_activator,_effector_binding_domain


id: SM00876
description: Biotin and Thiamin Synthesis associated domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00876
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00876_Biotin_and_Thiamin_Synthesis_associated_domain


id: SM00895
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00895
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00895_This_entry_represents_the_C-terminal_ligand_binding_domain_of_many_members_of_the_GntR_family._This_domain_probably_binds_to_a_range_of_effector_molecules_that_regulate_the_transcription_of_genes_through_the_action_of_the_N-terminal_DNA-binding_...

description:
  This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding ...


id: SM00896
description: Ferredoxin-fold anticodon binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00896
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00896_Ferredoxin-fold_anticodon_binding_domain


id: SM00899
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00899
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00899_This_entry_represents_the_core_domain_of_the_ferrous_iron_(Fe2+)_transport_protein_FeoA_found_in_bacteria._This_domain_also_occurs_at_the_C-terminus_in_related_proteins._The_transporter_Feo_is_composed_of_three_proteins:_FeoA_a_small,_soluble_...

description:
  This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C-terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble ...


id: SM00900
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00900
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00900_This_conserved_region_includes_the_FMN-binding_site_of_the_NqrC_protein_as_well_as_the_NosR_and_NirI_regulatory_proteins.

description:
  This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins.


id: SM00901
description: This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00901
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00901_This_domain_contains_a_conserved_N-terminal_(F/Y)RG_motif._It_is_functionally_uncharacterised.


id: SM00926
description: Molybdopterin oxidoreductase Fe4S4 domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00926
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00926_Molybdopterin_oxidoreductase_Fe4S4_domain


id: SM00928
description: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00928
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00928_NADH-ubiquinone_oxidoreductase-F_iron-sulfur_binding_region


id: SM00929
description: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00929
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00929_NADH-ubiquinone_oxidoreductase-G_iron-sulfur_binding_region


id: SM00934
description: Orotidine 5-phosphate decarboxylase / HUMPS family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00934
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00934_Orotidine_5-phosphate_decarboxylase_/_HUMPS_family


id: SM00936
description: Penicillin-binding protein 5, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00936
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00936_Penicillin-binding_protein_5,_C-terminal_domain


id: SM00937
description: This domain is found in peptide chain release factors.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00937
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00937_This_domain_is_found_in_peptide_chain_release_factors.


id: SM00955
description: This domain is the catalytic domain of ribonuclease II.PUBMED:16806266
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00955
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00955_This_domain_is_the_catalytic_domain_of_ribonuclease_II.PUBMED:16806266


id: SM00963
description: SRP54-type protein, helical bundle domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00963
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00963_SRP54-type_protein,_helical_bundle_domain


id: SM00967
description: RNA 2-O ribose methyltransferase substrate binding
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00967
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00967_RNA_2-O_ribose_methyltransferase_substrate_binding


id: SM00981
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00981
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00981_The_THUMP_domain_is_named_after_after_thiouridine_synthases,_methylases_and_PSUSs_PUBMED:11295541._The_THUMP_domain_consists_of_about_110_amino_acid_residues._The_structure_of_ThiI_reveals_that_the_THUMP_has_a_fold_unlike_that_of_previously_...

description:
  The THUMP domain is named after after thiouridine synthases, methylases and PSUSs PUBMED:11295541. The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously ...


id: SM00982
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00982
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00982_This_domain_is_found_in_proteins_necessary_for_strand-specific_repair_in_DNA_such_as_TRCF_in_Escherichia_coli._A_lesion_in_the_template_strand_blocks_the_RNA_polymerase_complex_(RNAP)._The_RNAP-DNA-RNA_complex_is_specifically_recognised_by_the_...

description:
  This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the ...


id: SM00983
description: Thiamin pyrophosphokinase, vitamin B1 binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00983
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00983_Thiamin_pyrophosphokinase,_vitamin_B1_binding_domain


id: SM00987
description: UreE urease accessory protein, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00987
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00987_UreE_urease_accessory_protein,_C-terminal_domain


id: SM00988
description: UreE urease accessory protein, N-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00988
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM00988_UreE_urease_accessory_protein,_N-terminal_domain


id: SM01007
description: Class II Aldolase and Adducin N-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01007
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01007_Class_II_Aldolase_and_Adducin_N-terminal_domain


id: SM01008
description: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01008
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01008_Aldehyde_oxidase_and_xanthine_dehydrogenase,_a/b_hammerhead_domain


id: SM01012
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01012
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01012_ANTAR_(AmiR_and_NasR_transcription_antitermination_regulators)_is_an_RNA-binding_domain_found_in_bacterial_transcription_antitermination_regulatory_proteins._The_majority_of_the_domain_consists_of_a_coiled-coil.

description:
  ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.


id: SM01016
description: Arginyl tRNA synthetase N terminal dom
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01016
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01016_Arginyl_tRNA_synthetase_N_terminal_dom


id: SM01086
description: C-terminal, D2-small domain, of ClpB protein
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01086
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01086_C-terminal,_D2-small_domain,_of_ClpB_protein


id: SM01096
description: Carbamoyl-phosphate synthetase large chain, oligomerisation domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01096
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01096_Carbamoyl-phosphate_synthetase_large_chain,_oligomerisation_domain


id: SM01097
description: Carbamoyl-phosphate synthase small chain, CPSase domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01097
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01097_Carbamoyl-phosphate_synthase_small_chain,_CPSase_domain


id: SM01103
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01103
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01103_Escherichia_coli_YhbY_is_associated_with_pre-50S_ribosomal_subunits,_which_implies_a_function_in_ribosome_assembly._GFP_fused_to_a_single-domain_CRM_protein_from_maize_localises_to_the_nucleolus,_suggesting_that_an_analogous_activity_may_have_been_...

description:
  Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been ...


id: SM01118
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01118
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01118_These_sequences_are_functionally_identified_as_members_of_the_adenylate_cyclase_family,_which_catalyses_the_conversion_of_ATP_to_3,5-cyclic_AMP_and_pyrophosphate._Six_distinct_non-homologous_classes_of_AC_have_been_identified._The_structure_of_...

description:
  These sequences are functionally identified as members of the adenylate cyclase family, which catalyses the conversion of ATP to 3,5-cyclic AMP and pyrophosphate. Six distinct non-homologous classes of AC have been identified. The structure of ...


id: SM01120
description: This domain is the predicted phosphatase domain of the dihydroxyacetone kinase family.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01120
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01120_This_domain_is_the_predicted_phosphatase_domain_of_the_dihydroxyacetone_kinase_family.


id: SM01121
description: This is the kinase domain of the dihydroxyacetone kinase family.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01121
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01121_This_is_the_kinase_domain_of_the_dihydroxyacetone_kinase_family.


id: SM01131
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01131
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01131_This_domain_is_often_found_adjacent_to_the_DHH_domain_PF01368_and_is_called_DHHA2_for_DHH_associated_domain._This_domain_is_diagnostic_of_DHH_subfamily_2_members_(PUBMED:9478130)._The_domain_is_about_120_residues_long_and_contains_a_conserved_DXK_...

description:
  This domain is often found adjacent to the DHH domain PF01368 and is called DHHA2 for DHH associated domain. This domain is diagnostic of DHH subfamily 2 members (PUBMED:9478130). The domain is about 120 residues long and contains a conserved DXK ...


id: SM01208
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01208
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01208_This_domain_is_found_in_a_wide_range_of_extracellular_proteins._It_is_found_tandemly_repeated_in_up_to_8_copies._It_is_found_in_the_N-terminus_of_peptidases_belonging_to_the_M26_family_which_cleave_human_IgA._The_domain_is_also_found_in_proteins_...

description:
  This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins ...


id: SM01209
description: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01209
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01209_Phosphoribosylglycinamide_synthetase,_ATP-grasp_(A)_domain


id: SM01210
description: Phosphoribosylglycinamide synthetase, C domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01210
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01210_Phosphoribosylglycinamide_synthetase,_C_domain


id: SM01211
description: CobB/CobQ-like glutamine amidotransferase domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01211
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01211_CobB/CobQ-like_glutamine_amidotransferase_domain


id: SM01230
description: Glutamine synthetase, catalytic domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01230
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01230_Glutamine_synthetase,_catalytic_domain


id: SM01234
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01234
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01234_This_domain_has_haemolytic_activity_(PMID:19306042)._It_is_found_in_short_(73-103_amino_acid)_proteins_and_contains_three_conserved_cysteine_residues.

description:
  This domain has haemolytic activity (PMID:19306042). It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.


id: SM01245
description: This domain is found at the N-terminus of jag proteins.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01245
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01245_This_domain_is_found_at_the_N-terminus_of_jag_proteins.


id: SM01324
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01324
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01324_This_presumed_extracellular_domain_is_about_70_amino_acids_in_length._It_is_named_YARHG_after_a_conserved_motif_in_the_sequence._This_domain_is_associated_with_peptidases_and_bacterial_kinase_proteins._Its_molecular_function_is_unknown.

description:
  This presumed extracellular domain is about 70 amino acids in length. It is named YARHG after a conserved motif in the sequence. This domain is associated with peptidases and bacterial kinase proteins. Its molecular function is unknown.


id: SM01329
description: Isocitrate/isopropylmalate dehydrogenase
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01329
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01329_Isocitrate/isopropylmalate_dehydrogenase


id: SM01340
description: DNA mismatch repair protein, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01340
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01340_DNA_mismatch_repair_protein,_C-terminal_domain


id: SM01382
description: Ribosomal Proteins L2, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01382
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01382_Ribosomal_Proteins_L2,_C-terminal_domain


id: SM01383
description: Ribosomal Proteins L2, RNA binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01383
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01383_Ribosomal_Proteins_L2,_RNA_binding_domain


id: SM01390
description: Ribosomal protein S4/S9 N-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01390
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01390_Ribosomal_protein_S4/S9_N-terminal_domain


id: SM01468
description: HUH conjugative element mobility domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01468
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01468_HUH_conjugative_element_mobility_domain


id: SM01470
description: HUH conjugative element mobility domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01470
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01470_HUH_conjugative_element_mobility_domain


id: SM01473
description: HUH conjugative element mobility domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01473
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01473_HUH_conjugative_element_mobility_domain


id: SM01488
description: DDE transposase retroviral integrase sub-family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01488
name:
  Protein Domains (SMART).STRING_v12.0_1261637_STRINGid_SM01488_DDE_transposase_retroviral_integrase_sub-family


