# geneInfo

ensembl_gene_id: FERRO_00100
symbol: nrdZ
gene_biotype: protein_coding
description:
  Vitamin B12-dependent ribonucleoside-diphosphate reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: FERRO_00380
symbol: kup
gene_biotype: protein_coding
description:
  Low affinity potassium transport system protein kup; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: FERRO_00410
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: FERRO_01050
symbol: rmlC_1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: FERRO_01070
symbol: rfbD
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: FERRO_01090
symbol: rfbB_1
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: FERRO_01280
symbol: rfaH_1
gene_biotype: protein_coding
description:
  Transcription antitermination protein RfaH; Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components. Belongs to the RfaH family.


ensembl_gene_id: FERRO_01850
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: FERRO_01870
symbol: ybeY
gene_biotype: protein_coding
description:
  Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: FERRO_01890
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: FERRO_01900
symbol: dsbB
gene_biotype: protein_coding
description:
  Disulfide bond formation protein B; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.


ensembl_gene_id: FERRO_01950
symbol: dsbC
gene_biotype: protein_coding
description:
  Putative thiol:disulfide interchange protein DsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: FERRO_02010
symbol: lptD
gene_biotype: protein_coding
description:
  LPS-assembly protein LptD precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.


ensembl_gene_id: FERRO_02020
symbol: surA
gene_biotype: protein_coding
description:
  Chaperone SurA precursor; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.


ensembl_gene_id: FERRO_02040
symbol: rsmA
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: FERRO_02070
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: FERRO_02100
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: FERRO_02110
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: FERRO_02120
symbol: prmC
gene_biotype: protein_coding
description:
  Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: FERRO_02210
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: FERRO_02260
symbol: livH_1
gene_biotype: protein_coding
description:
  High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: FERRO_02280
symbol: hemF
gene_biotype: protein_coding
description:
  Oxygen-dependent coproporphyrinogen-III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: FERRO_02290
symbol: tsaC
gene_biotype: protein_coding
description:
  threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.


ensembl_gene_id: FERRO_02330
symbol: dusC
gene_biotype: protein_coding
description:
  tRNA-dihydrouridine synthase C; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.


ensembl_gene_id: FERRO_02340
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: FERRO_02650
symbol: psrA
gene_biotype: protein_coding
description:
  Polysulfide reductase chain A precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: FERRO_02780
symbol: lptE
gene_biotype: protein_coding
description:
  LPS-assembly lipoprotein LptE; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.


ensembl_gene_id: FERRO_02800
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: FERRO_02810
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: FERRO_02820
symbol: rsfS
gene_biotype: protein_coding
description:
  Ribosomal silencing factor RsfS; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: FERRO_02830
symbol: rlmH
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: FERRO_02840
symbol: yhdE
gene_biotype: protein_coding
description:
  Maf-like protein YhdE; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: FERRO_02870
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: FERRO_02880
symbol: KRH79225.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: FERRO_02900
symbol: ubiE_1
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: FERRO_02920
symbol: ubiB
gene_biotype: protein_coding
description:
  Putative protein kinase UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.


ensembl_gene_id: FERRO_02940
symbol: tcyN
gene_biotype: protein_coding
description:
  L-cystine import ATP-binding protein TcyN; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: FERRO_03040
symbol: ptsI
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: FERRO_03050
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: FERRO_03080
symbol: metX
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.


ensembl_gene_id: FERRO_03090
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: FERRO_03100
symbol: gatA_1
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: FERRO_03110
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: FERRO_03150
symbol: spoVD
gene_biotype: protein_coding
description:
  Stage V sporulation protein D; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.


ensembl_gene_id: FERRO_03160
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: FERRO_03170
symbol: rlpA
gene_biotype: protein_coding
description:
  RlpA-like protein precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: FERRO_03210
symbol: lipB
gene_biotype: protein_coding
description:
  Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: FERRO_03220
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: FERRO_03230
symbol: fabF_1
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase 2; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: FERRO_03260
symbol: ychF
gene_biotype: protein_coding
description:
  Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: FERRO_03280
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: FERRO_03290
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: FERRO_03300
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: FERRO_03320
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: FERRO_03330
symbol: lolB
gene_biotype: protein_coding
description:
  Outer-membrane lipoprotein LolB precursor; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.


ensembl_gene_id: FERRO_03360
symbol: coaD
gene_biotype: protein_coding
description:
  Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: FERRO_03380
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: FERRO_03440
symbol: blc
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein Blc precursor; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.


ensembl_gene_id: FERRO_03470
symbol: rpoH
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: FERRO_03490
symbol: zapD
gene_biotype: protein_coding
description:
  Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.


ensembl_gene_id: FERRO_03500
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: FERRO_03510
symbol: outO
gene_biotype: protein_coding
description:
  Type 4 prepilin-like proteins leader peptide-processing enzyme; Belongs to the peptidase A24 family.


ensembl_gene_id: FERRO_03540
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: FERRO_03550
symbol: plsY
gene_biotype: protein_coding
description:
  Putative glycerol-3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: FERRO_03560
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: FERRO_03570
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: FERRO_03580
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: FERRO_03590
symbol: rimM
gene_biotype: protein_coding
description:
  Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: FERRO_03640
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: FERRO_03660
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: FERRO_03710
symbol: coaX
gene_biotype: protein_coding
description:
  Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: FERRO_03720
symbol: KRH79308.1
gene_biotype: protein_coding
description:
  D-beta-D-heptose 1-phosphate adenylyltransferase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.


ensembl_gene_id: FERRO_03760
symbol: rsmI_1
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: FERRO_03790
symbol: argF
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: FERRO_03800
symbol: argD
gene_biotype: protein_coding
description:
  Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: FERRO_03820
symbol: murJ
gene_biotype: protein_coding
description:
  Putative peptidoglycan biosynthesis protein MurJ; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: FERRO_03860
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: FERRO_03870
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: FERRO_03890
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: FERRO_04010
symbol: ilvA
gene_biotype: protein_coding
description:
  L-threonine dehydratase biosynthetic IlvA; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: FERRO_04020
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: FERRO_04030
symbol: phoU
gene_biotype: protein_coding
description:
  Phosphate-specific transport system accessory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: FERRO_04040
symbol: KRH79339.1
gene_biotype: protein_coding
description:
  Putative Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.


ensembl_gene_id: FERRO_04060
symbol: rsmE
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: FERRO_04120
symbol: gap1
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase 1; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: FERRO_04140
symbol: zapA
gene_biotype: protein_coding
description:
  Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: FERRO_04170
symbol: msbA
gene_biotype: protein_coding
description:
  Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: FERRO_04210
symbol: waaA
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: FERRO_04220
symbol: greB
gene_biotype: protein_coding
description:
  Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.


ensembl_gene_id: FERRO_04240
symbol: thiC
gene_biotype: protein_coding
description:
  Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: FERRO_04250
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: FERRO_04280
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: FERRO_04300
symbol: engB
gene_biotype: protein_coding
description:
  Putative GTP-binding protein EngB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: FERRO_04340
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase 1; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: FERRO_04350
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: FERRO_04380
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: FERRO_04390
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: FERRO_04430
symbol: glmU
gene_biotype: protein_coding
description:
  Bifunctional protein GlmU; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: FERRO_04440
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: FERRO_04450
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: FERRO_04460
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: FERRO_04470
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: FERRO_04480
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: FERRO_04490
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: FERRO_04500
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: FERRO_04510
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: FERRO_04550
symbol: rsmG
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: FERRO_04560
symbol: mnmG
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: FERRO_04570
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: FERRO_04580
symbol: yidC
gene_biotype: protein_coding
description:
  Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: FERRO_04590
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: FERRO_04610
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: FERRO_04620
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of  [...]


ensembl_gene_id: FERRO_04630
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: FERRO_04650
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: FERRO_04670
symbol: def_1
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: FERRO_04680
symbol: fmt_1
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: FERRO_04690
symbol: rsmB_1
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.


ensembl_gene_id: FERRO_04820
symbol: apaH
gene_biotype: protein_coding
description:
  Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.


ensembl_gene_id: FERRO_04850
symbol: tpx
gene_biotype: protein_coding
description:
  Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.


ensembl_gene_id: FERRO_04860
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: FERRO_04870
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: FERRO_04880
symbol: accC
gene_biotype: protein_coding
description:
  Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: FERRO_04890
symbol: accB
gene_biotype: protein_coding
description:
  Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: FERRO_04900
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: FERRO_04950
symbol: hemD
gene_biotype: protein_coding
description:
  uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: FERRO_04960
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: FERRO_04970
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.


ensembl_gene_id: FERRO_04980
symbol: ddlA
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: FERRO_05050
symbol: sufS
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: FERRO_05080
symbol: czcA_1
gene_biotype: protein_coding
description:
  Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: FERRO_05090
symbol: czcB
gene_biotype: protein_coding
description:
  Cobalt-zinc-cadmium resistance protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: FERRO_05170
symbol: metH
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: FERRO_05180
symbol: mpl
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.


ensembl_gene_id: FERRO_05230
symbol: yqgF
gene_biotype: protein_coding
description:
  Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: FERRO_05240
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: FERRO_05280
symbol: glnG
gene_biotype: protein_coding
description:
  Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: FERRO_05320
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: FERRO_05330
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: FERRO_05350
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: FERRO_05450
symbol: groL
gene_biotype: protein_coding
description:
  60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: FERRO_05460
symbol: groS
gene_biotype: protein_coding
description:
  10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: FERRO_05490
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: FERRO_05500
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: FERRO_05520
symbol: spoT
gene_biotype: protein_coding
description:
  Bifunctional (p)ppGpp synthase/hydrolase SpoT; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: FERRO_05530
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: FERRO_05560
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: FERRO_05570
symbol: rdgB
gene_biotype: protein_coding
description:
  dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: FERRO_05580
symbol: hemN_1
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: FERRO_05600
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: FERRO_05610
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: FERRO_05660
symbol: hprK
gene_biotype: protein_coding
description:
  HPr kinase/phosphorylase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).


ensembl_gene_id: FERRO_05690
symbol: rpoN
gene_biotype: protein_coding
description:
  RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: FERRO_05710
symbol: lptA
gene_biotype: protein_coding
description:
  Lipopolysaccharide export system protein LptA precursor; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.


ensembl_gene_id: FERRO_05750
symbol: kefC
gene_biotype: protein_coding
description:
  Glutathione-regulated potassium-efflux system protein KefC; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: FERRO_05840
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: FERRO_05850
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: FERRO_05860
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: FERRO_05870
symbol: hisC2_1
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase 2; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: FERRO_05890
symbol: hisH1
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit HisH 1; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: FERRO_05900
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase.


ensembl_gene_id: FERRO_05910
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: FERRO_05920
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: FERRO_05950
symbol: tatA
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: FERRO_05960
symbol: tatB
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: FERRO_05970
symbol: tatC
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: FERRO_05990
symbol: petA
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: FERRO_06000
symbol: fbcH
gene_biotype: protein_coding
description:
  Cytochrome b/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: FERRO_06420
symbol: tufA_1
gene_biotype: protein_coding
description:
  Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: FERRO_06440
symbol: secE
gene_biotype: protein_coding
description:
  Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.


ensembl_gene_id: FERRO_06460
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: FERRO_06470
symbol: rplA
gene_biotype: protein_coding
description:
  50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: FERRO_06480
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: FERRO_06490
symbol: rplL
gene_biotype: protein_coding
description:
  50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: FERRO_06500
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: FERRO_06520
symbol: rpsL
gene_biotype: protein_coding
description:
  30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: FERRO_06530
symbol: rpsG
gene_biotype: protein_coding
description:
  30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: FERRO_06540
symbol: fusA
gene_biotype: protein_coding
description:
  Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: FERRO_06560
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: FERRO_06570
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: FERRO_06590
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: FERRO_06600
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: FERRO_06610
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: FERRO_06620
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: FERRO_06630
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: FERRO_06640
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: FERRO_06660
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: FERRO_06670
symbol: rplN
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: FERRO_06680
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: FERRO_06690
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: FERRO_06700
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: FERRO_06710
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: FERRO_06720
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: FERRO_06730
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: FERRO_06740
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: FERRO_06760
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: FERRO_06770
symbol: secY
gene_biotype: protein_coding
description:
  Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: FERRO_06780
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: FERRO_06800
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: FERRO_06810
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: FERRO_06820
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: FERRO_06830
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: FERRO_06850
symbol: cynS
gene_biotype: protein_coding
description:
  Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.


ensembl_gene_id: FERRO_06880
symbol: uvrA
gene_biotype: protein_coding
description:
  UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: FERRO_06960
symbol: aspS
gene_biotype: protein_coding
description:
  aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: FERRO_07020
symbol: mdtC_1
gene_biotype: protein_coding
description:
  Multidrug resistance protein MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: FERRO_07030
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: FERRO_07050
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: FERRO_07070
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: FERRO_07100
symbol: mdtA_1
gene_biotype: protein_coding
description:
  Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: FERRO_07160
symbol: coq7
gene_biotype: protein_coding
description:
  2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.


ensembl_gene_id: FERRO_07170
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: FERRO_07180
symbol: anmK
gene_biotype: protein_coding
description:
  anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: FERRO_07200
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: FERRO_07250
symbol: xerC
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: FERRO_07270
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: FERRO_07290
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: FERRO_07300
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: FERRO_07310
symbol: metF
gene_biotype: protein_coding
description:
  5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: FERRO_07330
symbol: ttcA
gene_biotype: protein_coding
description:
  tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.


ensembl_gene_id: FERRO_07350
symbol: cca
gene_biotype: protein_coding
description:
  Multifunctional CCA protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.


ensembl_gene_id: FERRO_07380
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: FERRO_07390
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: FERRO_07410
symbol: bamE
gene_biotype: protein_coding
description:
  Outer membrane protein assembly factor BamE precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: FERRO_07420
symbol: dapB
gene_biotype: protein_coding
description:
  4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: FERRO_07450
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: FERRO_07470
symbol: rlmE
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: FERRO_07480
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: FERRO_07490
symbol: folP
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: FERRO_07500
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: FERRO_07520
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: FERRO_07560
symbol: pstS
gene_biotype: protein_coding
description:
  Phosphate-binding protein PstS precursor; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: FERRO_07570
symbol: pstC
gene_biotype: protein_coding
description:
  Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: FERRO_07590
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: FERRO_07600
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: FERRO_07610
symbol: secG
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: FERRO_07630
symbol: nqo7
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit 7; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: FERRO_07640
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: FERRO_07650
symbol: nuoC1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit C 1; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: FERRO_07660
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: FERRO_07680
symbol: nuoF
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: FERRO_07690
symbol: nqo3
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: FERRO_07700
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: FERRO_07710
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: FERRO_07720
symbol: nuoJ
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: FERRO_07730
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: FERRO_07760
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: FERRO_07830
symbol: rlmD
gene_biotype: protein_coding
description:
  23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.


ensembl_gene_id: FERRO_07900
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: FERRO_07910
symbol: KRH79717.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: FERRO_07920
symbol: selO
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: FERRO_07940
symbol: gloA
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.


ensembl_gene_id: FERRO_08050
symbol: fdhD
gene_biotype: protein_coding
description:
  Protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: FERRO_08170
symbol: aaeA
gene_biotype: protein_coding
description:
  P-hydroxybenzoic acid efflux pump subunit AaeA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: FERRO_08230
symbol: cbbL_1
gene_biotype: protein_coding
description:
  Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.


ensembl_gene_id: FERRO_08430
symbol: queC
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine synthase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: FERRO_08450
symbol: queE
gene_biotype: protein_coding
description:
  7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: FERRO_08460
symbol: rppH
gene_biotype: protein_coding
description:
  RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: FERRO_08490
symbol: ahpC
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase subunit C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: FERRO_08510
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: FERRO_08610
symbol: rsmH
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: FERRO_08620
symbol: ftsL
gene_biotype: protein_coding
description:
  Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: FERRO_08630
symbol: penA
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.


ensembl_gene_id: FERRO_08640
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: FERRO_08650
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: FERRO_08660
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: FERRO_08670
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: FERRO_08680
symbol: ftsW
gene_biotype: protein_coding
description:
  Lipid II flippase FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.


ensembl_gene_id: FERRO_08690
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: FERRO_08720
symbol: ftsQ
gene_biotype: protein_coding
description:
  Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.


ensembl_gene_id: FERRO_08730
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: FERRO_08740
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: FERRO_08750
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: FERRO_08770
symbol: secA
gene_biotype: protein_coding
description:
  Protein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: FERRO_08780
symbol: argJ
gene_biotype: protein_coding
description:
  Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: FERRO_08830
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: FERRO_08840
symbol: glnE
gene_biotype: protein_coding
description:
  Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]


ensembl_gene_id: FERRO_08870
symbol: yciB_1
gene_biotype: protein_coding
description:
  Putative intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: FERRO_08890
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: FERRO_08900
symbol: scpA
gene_biotype: protein_coding
description:
  Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: FERRO_08910
symbol: KRH79815.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: FERRO_08920
symbol: rluB
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: FERRO_08930
symbol: prmB
gene_biotype: protein_coding
description:
  50S ribosomal protein L3 glutamine methyltransferase; Belongs to the protein N5-glutamine methyltransferase family.


ensembl_gene_id: FERRO_08940
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: FERRO_08960
symbol: dapD
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: FERRO_08980
symbol: queF
gene_biotype: protein_coding
description:
  NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: FERRO_08990
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: FERRO_09000
symbol: KRH79824.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.


ensembl_gene_id: FERRO_09010
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: FERRO_09050
symbol: glnD
gene_biotype: protein_coding
description:
  Bifunctional uridylyltransferase/uridylyl-removing enzyme; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.


ensembl_gene_id: FERRO_09060
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: FERRO_09080
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: FERRO_09100
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome-recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: FERRO_09110
symbol: ispU
gene_biotype: protein_coding
description:
  Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: FERRO_09130
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: FERRO_09150
symbol: bamA
gene_biotype: protein_coding
description:
  Outer membrane protein assembly factor BamA precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: FERRO_09170
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: FERRO_09180
symbol: fabZ
gene_biotype: protein_coding
description:
  3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: FERRO_09190
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: FERRO_09200
symbol: lpxB
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: FERRO_09220
symbol: KRH79846.1
gene_biotype: protein_coding
description:
  Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: FERRO_09250
symbol: ppsR
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase regulatory protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: FERRO_09260
symbol: ppsA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: FERRO_09300
symbol: frc
gene_biotype: protein_coding
description:
  Formyl-coenzyme A transferase; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate; Belongs to the CoA-transferase III family. Frc subfamily.


ensembl_gene_id: FERRO_09310
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: FERRO_09330
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: FERRO_09340
symbol: ftsB
gene_biotype: protein_coding
description:
  Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: FERRO_09350
symbol: bamD_1
gene_biotype: protein_coding
description:
  Outer membrane protein assembly factor BamD precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: FERRO_09360
symbol: rluD
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: FERRO_09460
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: FERRO_09490
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: FERRO_09510
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: FERRO_09520
symbol: trmL
gene_biotype: protein_coding
description:
  tRNA (cytidine(34)-2'-O)-methyltransferase; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: FERRO_09530
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: FERRO_09540
symbol: secB
gene_biotype: protein_coding
description:
  Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: FERRO_09550
symbol: grxC
gene_biotype: protein_coding
description:
  Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: FERRO_09570
symbol: gpmA
gene_biotype: protein_coding
description:
  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: FERRO_09610
symbol: tsaD
gene_biotype: protein_coding
description:
  tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: FERRO_09640
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: FERRO_09650
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: FERRO_09740
symbol: rho
gene_biotype: protein_coding
description:
  Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: FERRO_09760
symbol: KRH79900.1
gene_biotype: protein_coding
description:
  Ferredoxin 1; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: FERRO_09790
symbol: sodB
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: FERRO_09800
symbol: aceE
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: FERRO_09810
symbol: moaC
gene_biotype: protein_coding
description:
  Cyclic pyranopterin monophosphate synthase accessory protein; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: FERRO_09830
symbol: valS
gene_biotype: protein_coding
description:
  valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: FERRO_09850
symbol: pepA_1
gene_biotype: protein_coding
description:
  Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: FERRO_10010
symbol: acrE
gene_biotype: protein_coding
description:
  Multidrug export protein AcrE precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: FERRO_10020
symbol: mdtB_1
gene_biotype: protein_coding
description:
  Multidrug resistance protein MdtB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: FERRO_10230
symbol: aceK
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase kinase/phosphatase; Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation.


ensembl_gene_id: FERRO_10360
symbol: ccmE
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: FERRO_10370
symbol: KRH78058.1
gene_biotype: protein_coding
description:
  Heme exporter protein D (CcmD); Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.


ensembl_gene_id: FERRO_10380
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: FERRO_10390
symbol: ccmB
gene_biotype: protein_coding
description:
  Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.


ensembl_gene_id: FERRO_10400
symbol: ccmA
gene_biotype: protein_coding
description:
  Cytochrome c biogenesis ATP-binding export protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.


ensembl_gene_id: FERRO_10570
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: FERRO_10580
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase subunit YajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: FERRO_10590
symbol: secD
gene_biotype: protein_coding
description:
  Protein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: FERRO_10600
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: FERRO_10640
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: FERRO_10680
symbol: KRH78088.1
gene_biotype: protein_coding
description:
  Putative regulator of ribonuclease activity; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.


ensembl_gene_id: FERRO_10710
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: FERRO_10730
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: FERRO_10750
symbol: rimP
gene_biotype: protein_coding
description:
  Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: FERRO_10770
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: FERRO_10780
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: FERRO_10790
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: FERRO_10910
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: FERRO_10930
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]


ensembl_gene_id: FERRO_10940
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: FERRO_10950
symbol: obg
gene_biotype: protein_coding
description:
  GTPase Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: FERRO_10970
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: FERRO_11010
symbol: dgkA
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: FERRO_11050
symbol: pntA
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit alpha; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the AlaDH/PNT family.


ensembl_gene_id: FERRO_11060
symbol: pntB
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: FERRO_11080
symbol: efp
gene_biotype: protein_coding
description:
  Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: FERRO_11120
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: FERRO_11160
symbol: lolD_2
gene_biotype: protein_coding
description:
  Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.


ensembl_gene_id: FERRO_11200
symbol: relA
gene_biotype: protein_coding
description:
  GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: FERRO_11250
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional repressor NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: FERRO_11260
symbol: ribD
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: FERRO_11280
symbol: ribBA_1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: FERRO_11290
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: FERRO_11300
symbol: nusB
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: FERRO_11310
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: FERRO_11320
symbol: pgpA
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).


ensembl_gene_id: FERRO_11350
symbol: recA
gene_biotype: protein_coding
description:
  Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: FERRO_11370
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: FERRO_11400
symbol: panC
gene_biotype: protein_coding
description:
  Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: FERRO_11430
symbol: pcnB
gene_biotype: protein_coding
description:
  poly(A) polymerase I precursor; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: FERRO_11490
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: FERRO_11500
symbol: rsmB_2
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: FERRO_11570
symbol: cysNC
gene_biotype: protein_coding
description:
  Bifunctional enzyme CysN/CysC; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: FERRO_11700
symbol: coaBC
gene_biotype: protein_coding
description:
  Coenzyme A biosynthesis bifunctional protein CoaBC; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: FERRO_11710
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: FERRO_11750
symbol: glyA2
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase 2; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: FERRO_11830
symbol: wbpA
gene_biotype: protein_coding
description:
  UDP-N-acetyl-D-glucosamine 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: FERRO_11900
symbol: mdoD
gene_biotype: protein_coding
description:
  Glucans biosynthesis protein D precursor; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: FERRO_11920
symbol: gltX
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: FERRO_11990
symbol: KRH78218.1
gene_biotype: protein_coding
description:
  Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: FERRO_12050
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: FERRO_12100
symbol: ureE
gene_biotype: protein_coding
description:
  Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.


ensembl_gene_id: FERRO_12110
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: FERRO_12120
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: FERRO_12390
symbol: rluE
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: FERRO_12500
symbol: serC_1
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: FERRO_12510
symbol: serA
gene_biotype: protein_coding
description:
  D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: FERRO_12670
symbol: epsE
gene_biotype: protein_coding
description:
  Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.


ensembl_gene_id: FERRO_12820
symbol: bbsF
gene_biotype: protein_coding
description:
  succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsF; Belongs to the CoA-transferase III family.


ensembl_gene_id: FERRO_12860
symbol: ubiC
gene_biotype: protein_coding
description:
  Chorismate pyruvate-lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.


ensembl_gene_id: FERRO_13000
symbol: bspRIM
gene_biotype: protein_coding
description:
  Modification methylase BspRI; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: FERRO_13010
symbol: vsr
gene_biotype: protein_coding
description:
  Very short patch repair protein; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.


ensembl_gene_id: FERRO_13390
symbol: rbsC
gene_biotype: protein_coding
description:
  Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: FERRO_13460
symbol: modB
gene_biotype: protein_coding
description:
  Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: FERRO_13500
symbol: crcB
gene_biotype: protein_coding
description:
  Putative fluoride ion transporter CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: FERRO_13570
symbol: hemN_2
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen-III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: FERRO_13600
symbol: KRH78376.1
gene_biotype: protein_coding
description:
  Transport protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: FERRO_13630
symbol: purK
gene_biotype: protein_coding
description:
  N5-carboxyaminoimidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: FERRO_13640
symbol: purE
gene_biotype: protein_coding
description:
  N5-carboxyaminoimidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: FERRO_13680
symbol: arnB
gene_biotype: protein_coding
description:
  UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: FERRO_13730
symbol: lolA
gene_biotype: protein_coding
description:
  Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: FERRO_13950
symbol: fda
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: FERRO_14020
symbol: cbbL_2
gene_biotype: protein_coding
description:
  Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.


ensembl_gene_id: FERRO_14030
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: FERRO_14060
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: FERRO_14630
symbol: tadA
gene_biotype: protein_coding
description:
  tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: FERRO_14650
symbol: metG
gene_biotype: protein_coding
description:
  methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: FERRO_14660
symbol: ylxH
gene_biotype: protein_coding
description:
  Flagellum site-determining protein YlxH; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: FERRO_14680
symbol: flhD
gene_biotype: protein_coding
description:
  Flagellar transcriptional regulator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways.


ensembl_gene_id: FERRO_14760
symbol: cyoB
gene_biotype: protein_coding
description:
  Cytochrome bo(3) ubiquinol oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: FERRO_14790
symbol: cyoE
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: FERRO_14800
symbol: hupB
gene_biotype: protein_coding
description:
  DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: FERRO_14920
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: FERRO_14950
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: FERRO_14970
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: FERRO_14980
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: FERRO_14990
symbol: ate
gene_biotype: protein_coding
description:
  Putative arginyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: FERRO_15000
symbol: moeA
gene_biotype: protein_coding
description:
  Molybdopterin molybdenumtransferase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: FERRO_15010
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdenum cofactor guanylyltransferase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: FERRO_15020
symbol: moaA_1
gene_biotype: protein_coding
description:
  Cyclic pyranopterin monophosphate synthase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: FERRO_15060
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: FERRO_15080
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: FERRO_15090
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: FERRO_15100
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: FERRO_15110
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: FERRO_15210
symbol: hsdR
gene_biotype: protein_coding
description:
  Type I restriction enzyme R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.


ensembl_gene_id: FERRO_15230
symbol: aceF
gene_biotype: protein_coding
description:
  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: FERRO_15250
symbol: surE
gene_biotype: protein_coding
description:
  5'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: FERRO_15260
symbol: pcm_2
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: FERRO_15330
symbol: thrC
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: FERRO_15360
symbol: clpB
gene_biotype: protein_coding
description:
  Chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: FERRO_15420
symbol: paiA
gene_biotype: protein_coding
description:
  Protease synthase and sporulation negative regulatory protein PAI 1; Acetylates the N-terminal alanine of ribosomal protein S18.


ensembl_gene_id: FERRO_15530
symbol: ttgA
gene_biotype: protein_coding
description:
  Toluene efflux pump periplasmic linker protein TtgA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: FERRO_15540
symbol: bepE
gene_biotype: protein_coding
description:
  Efflux pump membrane transporter BepE; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: FERRO_15560
symbol: bioF
gene_biotype: protein_coding
description:
  8-amino-7-oxononanoate synthase 2; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.


ensembl_gene_id: FERRO_15570
symbol: bioA
gene_biotype: protein_coding
description:
  Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: FERRO_15580
symbol: bioD1
gene_biotype: protein_coding
description:
  ATP-dependent dethiobiotin synthetase BioD 1; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: FERRO_15630
symbol: arsC_2
gene_biotype: protein_coding
description:
  Glutaredoxin arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: FERRO_15660
symbol: artJ
gene_biotype: protein_coding
description:
  Putative ABC transporter arginine-binding protein ArtJ precursor; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: FERRO_15700
symbol: mscL
gene_biotype: protein_coding
description:
  Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: FERRO_16150
symbol: ubiG_2
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: FERRO_16170
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: FERRO_16220
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: FERRO_16240
symbol: rpsA
gene_biotype: protein_coding
description:
  30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: FERRO_16250
symbol: ihfB
gene_biotype: protein_coding
description:
  Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: FERRO_16270
symbol: yciM
gene_biotype: protein_coding
description:
  Lipopolysaccharide regulatory protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.


ensembl_gene_id: FERRO_16280
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: FERRO_16310
symbol: hldD
gene_biotype: protein_coding
description:
  ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.


ensembl_gene_id: FERRO_16440
symbol: uvrB
gene_biotype: protein_coding
description:
  UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...]


ensembl_gene_id: FERRO_16470
symbol: nadE
gene_biotype: protein_coding
description:
  Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: FERRO_16580
symbol: rmlA1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase 1; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: FERRO_16610
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: FERRO_16630
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: FERRO_16750
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: FERRO_16820
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: FERRO_16830
symbol: mltG
gene_biotype: protein_coding
description:
  Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: FERRO_16840
symbol: fabF_2
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: FERRO_16860
symbol: fabG
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] reductase FabG; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: FERRO_16880
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase 3; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: FERRO_16890
symbol: plsX
gene_biotype: protein_coding
description:
  Phosphate acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: FERRO_16920
symbol: yceF
gene_biotype: protein_coding
description:
  Maf-like protein YceF; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.


ensembl_gene_id: FERRO_16960
symbol: arpA
gene_biotype: protein_coding
description:
  Antibiotic efflux pump periplasmic linker protein ArpA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: FERRO_16980
symbol: rluC
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: FERRO_16990
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: FERRO_17020
symbol: lexA_2
gene_biotype: protein_coding
description:
  LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: FERRO_17080
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase 4 subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: FERRO_17090
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase 4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: FERRO_17110
symbol: yedY_3
gene_biotype: protein_coding
description:
  Sulfoxide reductase catalytic subunit YedY precursor; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being  [...]


ensembl_gene_id: FERRO_17120
symbol: yedZ
gene_biotype: protein_coding
description:
  Sulfoxide reductase heme-binding subunit YedZ; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalyti [...]


ensembl_gene_id: FERRO_17190
symbol: pgsA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: FERRO_17200
symbol: uvrC
gene_biotype: protein_coding
description:
  UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: FERRO_17230
symbol: nagZ
gene_biotype: protein_coding
description:
  Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.


ensembl_gene_id: FERRO_17240
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-[acyl-carrier-protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: FERRO_17250
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: FERRO_17270
symbol: era
gene_biotype: protein_coding
description:
  GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: FERRO_17280
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: FERRO_17300
symbol: lepA
gene_biotype: protein_coding
description:
  Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: FERRO_17360
symbol: nnr
gene_biotype: protein_coding
description:
  Bifunctional NAD(P)H-hydrate repair enzyme Nnr; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.


ensembl_gene_id: FERRO_17370
symbol: KRH78741.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.


ensembl_gene_id: FERRO_17410
symbol: rluF
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase F; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: FERRO_17430
symbol: KRH78747.1
gene_biotype: protein_coding
description:
  Putative 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: FERRO_17490
symbol: sucB
gene_biotype: protein_coding
description:
  Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: FERRO_17530
symbol: sdhB
gene_biotype: protein_coding
description:
  Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: FERRO_17540
symbol: sdhA
gene_biotype: protein_coding
description:
  Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: FERRO_17580
symbol: prpB
gene_biotype: protein_coding
description:
  Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.


ensembl_gene_id: FERRO_17620
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.


ensembl_gene_id: FERRO_17640
symbol: lon
gene_biotype: protein_coding
description:
  Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: FERRO_17650
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: FERRO_17660
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: FERRO_17670
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: FERRO_17790
symbol: metE
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: FERRO_17890
symbol: mtnP
gene_biotype: protein_coding
description:
  S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.


ensembl_gene_id: FERRO_18020
symbol: nasA_2
gene_biotype: protein_coding
description:
  Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.


ensembl_gene_id: FERRO_18130
symbol: radA
gene_biotype: protein_coding
description:
  Hypothetical protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: FERRO_18140
symbol: dnaB
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: FERRO_18160
symbol: rpsR
gene_biotype: protein_coding
description:
  30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: FERRO_18200
symbol: rlmB
gene_biotype: protein_coding
description:
  23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.


ensembl_gene_id: FERRO_18210
symbol: rnr_2
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: FERRO_18390
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: FERRO_18400
symbol: hisZ
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.


ensembl_gene_id: FERRO_18440
symbol: hflX
gene_biotype: protein_coding
description:
  GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: FERRO_18450
symbol: hfq
gene_biotype: protein_coding
description:
  RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: FERRO_18460
symbol: der
gene_biotype: protein_coding
description:
  GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: FERRO_18470
symbol: bamB
gene_biotype: protein_coding
description:
  Outer membrane protein assembly factor BamB precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: FERRO_18500
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: FERRO_18520
symbol: rlmN
gene_biotype: protein_coding
description:
  Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: FERRO_18530
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: FERRO_18540
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: FERRO_18550
symbol: accA
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: FERRO_18560
symbol: yvqK
gene_biotype: protein_coding
description:
  Cob(I)yrinic acid a,c-diamide adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: FERRO_18580
symbol: aroG
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: FERRO_18620
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: FERRO_18670
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: FERRO_18700
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: FERRO_18710
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: FERRO_18720
symbol: mltF
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase F precursor; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein  [...]


ensembl_gene_id: FERRO_18730
symbol: serS
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: FERRO_18740
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: FERRO_18750
symbol: KRH78877.1
gene_biotype: protein_coding
description:
  Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: FERRO_18760
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: FERRO_18770
symbol: pagL
gene_biotype: protein_coding
description:
  Lipid A deacylase PagL precursor; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.


ensembl_gene_id: FERRO_18780
symbol: scoA
gene_biotype: protein_coding
description:
  Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.


ensembl_gene_id: FERRO_18800
symbol: ribBA_2
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: FERRO_18810
symbol: dfrA
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: FERRO_18860
symbol: pfp
gene_biotype: protein_coding
description:
  Pyrophosphate--fructose 6-phosphate 1-phosphotransferase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: FERRO_18870
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: FERRO_18880
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: FERRO_18900
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: FERRO_18930
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: FERRO_18940
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: FERRO_18950
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: FERRO_18980
symbol: queG
gene_biotype: protein_coding
description:
  Epoxyqueuosine reductase; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: FERRO_19000
symbol: orn
gene_biotype: protein_coding
description:
  Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: FERRO_19020
symbol: rsgA
gene_biotype: protein_coding
description:
  Putative ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: FERRO_19040
symbol: mnmC
gene_biotype: protein_coding
description:
  tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.


ensembl_gene_id: FERRO_19060
symbol: nadK
gene_biotype: protein_coding
description:
  NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: FERRO_19070
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: FERRO_19080
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: FERRO_19090
symbol: grpE
gene_biotype: protein_coding
description:
  Protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: FERRO_19110
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: FERRO_19140
symbol: ppiB
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: FERRO_19150
symbol: lpxH_2
gene_biotype: protein_coding
description:
  UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: FERRO_19160
symbol: nrdB
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: FERRO_19170
symbol: nrdA
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase 1 subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: FERRO_19180
symbol: metZ
gene_biotype: protein_coding
description:
  O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: FERRO_19190
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: FERRO_19220
symbol: accD
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: FERRO_19230
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: FERRO_19240
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: FERRO_19260
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: FERRO_19280
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: FERRO_19290
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: FERRO_19300
symbol: leuD1
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase small subunit 1; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: FERRO_19310
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: FERRO_19320
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: FERRO_19450
symbol: bamD_2
gene_biotype: protein_coding
description:
  Outer membrane protein assembly factor BamD; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: FERRO_19460
symbol: pal
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: FERRO_19470
symbol: tolB
gene_biotype: protein_coding
description:
  Protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: FERRO_19500
symbol: exbB_4
gene_biotype: protein_coding
description:
  Biopolymer transport protein ExbB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: FERRO_19520
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: FERRO_19530
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: FERRO_19540
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: FERRO_19570
symbol: dksA
gene_biotype: protein_coding
description:
  RNA polymerase-binding transcription factor DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: FERRO_19580
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: FERRO_19590
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: FERRO_19620
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase proenzyme; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: FERRO_19630
symbol: ilvC_2
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: FERRO_19710
symbol: acsA_2
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: FERRO_19720
symbol: fumB
gene_biotype: protein_coding
description:
  Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: FERRO_19730
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: FERRO_19760
symbol: trmJ
gene_biotype: protein_coding
description:
  tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: FERRO_19810
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: FERRO_19880
symbol: dapA
gene_biotype: protein_coding
description:
  4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


# pathwayInfo

id: CL:1016
description: Tryptophan biosynthesis, and ADC synthase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1016_Tryptophan_biosynthesis,_and_ADC_synthase


id: CL:1031
description: One-carbon metabolic process, and Methionyl-tRNA formyltransferase, C-terminal domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1031_One-carbon_metabolic_process,_and_Methionyl-tRNA_formyltransferase,_C-terminal_domain


id: CL:1047
description: Vitamin biosynthetic process, and Pyridine nucleotide biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1047_Vitamin_biosynthetic_process,_and_Pyridine_nucleotide_biosynthetic_process


id: CL:1049
description: Mixed, incl. Riboflavin metabolic process, and Sugar transporter, conserved site
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1049_Mixed,_incl._Riboflavin_metabolic_process,_and_Sugar_transporter,_conserved_site


id: CL:1051
description: Riboflavin metabolic process, and Phospholipid metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1051_Riboflavin_metabolic_process,_and_Phospholipid_metabolism


id: CL:108
description: Structural constituent of ribosome
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:108_Structural_constituent_of_ribosome


id: CL:1087
description: Mixed, incl. Pantothenate biosynthetic process, and Biotin metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1087_Mixed,_incl._Pantothenate_biosynthetic_process,_and_Biotin_metabolic_process


id: CL:1089
description: Pantothenate biosynthetic process, and Biotin/lipoate A/B protein ligase family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1089_Pantothenate_biosynthetic_process,_and_Biotin/lipoate_A/B_protein_ligase_family


id: CL:1107
description: Biotin biosynthesis, and Sodium/solute symporter
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1107_Biotin_biosynthesis,_and_Sodium/solute_symporter


id: CL:1116
description: Mixed, incl. Generation of precursor metabolites and energy, and Fatty acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1116_Mixed,_incl._Generation_of_precursor_metabolites_and_energy,_and_Fatty_acid_metabolic_process


id: CL:1117
description: Mixed, incl. Generation of precursor metabolites and energy, and Fatty acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1117_Mixed,_incl._Generation_of_precursor_metabolites_and_energy,_and_Fatty_acid_metabolic_process


id: CL:1118
description: Mixed, incl. Generation of precursor metabolites and energy, and Fatty acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1118_Mixed,_incl._Generation_of_precursor_metabolites_and_energy,_and_Fatty_acid_metabolic_process


id: CL:1119
description: Mixed, incl. Generation of precursor metabolites and energy, and Fatty acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1119_Mixed,_incl._Generation_of_precursor_metabolites_and_energy,_and_Fatty_acid_metabolic_process


id: CL:1120
description: Mixed, incl. Generation of precursor metabolites and energy, and Fatty acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1120_Mixed,_incl._Generation_of_precursor_metabolites_and_energy,_and_Fatty_acid_metabolic_process


id: CL:1121
description: Mixed, incl. Carbon metabolism, and Fatty acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1121_Mixed,_incl._Carbon_metabolism,_and_Fatty_acid_metabolic_process


id: CL:1122
description: Mixed, incl. Carbon metabolism, and Fatty acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1122_Mixed,_incl._Carbon_metabolism,_and_Fatty_acid_metabolic_process


id: CL:1123
description: Mixed, incl. Citrate cycle (TCA cycle), and Propanoate metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1123_Mixed,_incl._Citrate_cycle_(TCA_cycle),_and_Propanoate_metabolism


id: CL:1125
description: Mixed, incl. Citrate cycle (TCA cycle), and acetyl-CoA metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1125_Mixed,_incl._Citrate_cycle_(TCA_cycle),_and_acetyl-CoA_metabolic_process


id: CL:1126
description: Citrate cycle (TCA cycle), and acetyl-CoA metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1126_Citrate_cycle_(TCA_cycle),_and_acetyl-CoA_metabolic_process


id: CL:1127
description: Citrate cycle (TCA cycle), and Citrate synthase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1127_Citrate_cycle_(TCA_cycle),_and_Citrate_synthase


id: CL:1129
description: Tricarboxylic acid cycle, and ICL/PEPM domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1129_Tricarboxylic_acid_cycle,_and_ICL/PEPM_domain


id: CL:1131
description: Succinate dehydrogenase activity, and CoA-ligase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1131_Succinate_dehydrogenase_activity,_and_CoA-ligase


id: CL:1145
description: Citrate synthase, and ICL/PEPM domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1145_Citrate_synthase,_and_ICL/PEPM_domain


id: CL:1157
description: Mixed, incl. e3 binding domain, and Regulation of secretion
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1157_Mixed,_incl._e3_binding_domain,_and_Regulation_of_secretion


id: CL:1166
description: acetyl-CoA metabolic process, and Pyruvate metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1166_acetyl-CoA_metabolic_process,_and_Pyruvate_metabolism


id: CL:1169
description: Phosphate acetyl/butaryl transferase, and ICL/PEPM domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1169_Phosphate_acetyl/butaryl_transferase,_and_ICL/PEPM_domain


id: CL:1188
description: Lipid oxidation, and Electron transfer flavoprotein domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1188_Lipid_oxidation,_and_Electron_transfer_flavoprotein_domain


id: CL:1219
description: Fatty acid biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1219_Fatty_acid_biosynthetic_process


id: CL:1221
description: Fatty acid biosynthesis, and Acyl transferase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1221_Fatty_acid_biosynthesis,_and_Acyl_transferase


id: CL:1255
description: Mixed, incl. Phasin, and Thiolase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1255_Mixed,_incl._Phasin,_and_Thiolase


id: CL:1267
description: Mixed, incl. Oxidoreduction-driven active transmembrane transporter activity, and Quinone
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1267_Mixed,_incl._Oxidoreduction-driven_active_transmembrane_transporter_activity,_and_Quinone


id: CL:1269
description: Oxidoreduction-driven active transmembrane transporter activity, and Quinone
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1269_Oxidoreduction-driven_active_transmembrane_transporter_activity,_and_Quinone


id: CL:1270
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1270_Oxidoreductase_activity,_acting_on_NAD(P)H,_quinone_or_similar_compound_as_acceptor,_and_Thioredoxin-like_[2Fe-2S]_ferredoxin

description:
  Oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor, and Thioredoxin-like [2Fe-2S] ferredoxin


id: CL:1297
description: Mixed, incl. NADH dehydrogenase complex, and NAD(P)-binding domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1297_Mixed,_incl._NADH_dehydrogenase_complex,_and_NAD(P)-binding_domain


id: CL:131
description: rRNA-binding, and Elongation Factor G, domain II
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:131_rRNA-binding,_and_Elongation_Factor_G,_domain_II


id: CL:1315
description: Oxidoreductase activity, acting on a heme group of donors, and UbiA prenyltransferase family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1315_Oxidoreductase_activity,_acting_on_a_heme_group_of_donors,_and_UbiA_prenyltransferase_family


id: CL:1343
description: Mixed, incl. Acetyl-CoA carboxylase, and Ketone body metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1343_Mixed,_incl._Acetyl-CoA_carboxylase,_and_Ketone_body_metabolic_process


id: CL:1358
description: Mixed, incl. Ketone catabolic process, and Rhodanese-like domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1358_Mixed,_incl._Ketone_catabolic_process,_and_Rhodanese-like_domain


id: CL:1360
description: Mixed, incl. Rhodanese-like domain, and HNH nuclease
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1360_Mixed,_incl._Rhodanese-like_domain,_and_HNH_nuclease


id: CL:1372
description: Ketone catabolic process, and Glutamate metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1372_Ketone_catabolic_process,_and_Glutamate_metabolic_process


id: CL:1381
description: Glyoxylate cycle, and Nuclease inhibitor activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1381_Glyoxylate_cycle,_and_Nuclease_inhibitor_activity


id: CL:1390
description: Mixed, incl. FAD-linked oxidase-like, C-terminal, and Response to iron ion
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1390_Mixed,_incl._FAD-linked_oxidase-like,_C-terminal,_and_Response_to_iron_ion


id: CL:1403
description: Carbohydrate metabolic process, and O-Antigen nucleotide sugar biosynthesis
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1403_Carbohydrate_metabolic_process,_and_O-Antigen_nucleotide_sugar_biosynthesis


id: CL:1404
description: Carbohydrate metabolic process, and O-Antigen nucleotide sugar biosynthesis
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1404_Carbohydrate_metabolic_process,_and_O-Antigen_nucleotide_sugar_biosynthesis


id: CL:1405
description: Mixed, incl. O-Antigen nucleotide sugar biosynthesis, and Carbohydrate catabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1405_Mixed,_incl._O-Antigen_nucleotide_sugar_biosynthesis,_and_Carbohydrate_catabolic_process


id: CL:1406
description: Mixed, incl. O-Antigen nucleotide sugar biosynthesis, and Glycosyl transferase, family 1
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1406_Mixed,_incl._O-Antigen_nucleotide_sugar_biosynthesis,_and_Glycosyl_transferase,_family_1


id: CL:1407
description: O-Antigen nucleotide sugar biosynthesis, and Glycosyl transferase, family 1
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1407_O-Antigen_nucleotide_sugar_biosynthesis,_and_Glycosyl_transferase,_family_1


id: CL:1408
description: O-Antigen nucleotide sugar biosynthesis, and SAF domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1408_O-Antigen_nucleotide_sugar_biosynthesis,_and_SAF_domain


id: CL:1409
description: Polyketide sugar unit biosynthesis, and UDP-N-acetylglucosamine 2-epimerase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1409_Polyketide_sugar_unit_biosynthesis,_and_UDP-N-acetylglucosamine_2-epimerase


id: CL:1410
description: Polyketide sugar unit biosynthesis
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1410_Polyketide_sugar_unit_biosynthesis


id: CL:1423
description: Mixed, incl. UDP-N-acetylglucosamine 2-epimerase, and SAF domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1423_Mixed,_incl._UDP-N-acetylglucosamine_2-epimerase,_and_SAF_domain


id: CL:1434
description: Mixed, incl. UDP-glucose metabolic process, and NAD-dependent epimerase/dehydratase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1434_Mixed,_incl._UDP-glucose_metabolic_process,_and_NAD-dependent_epimerase/dehydratase


id: CL:1443
description: Mixed, incl. Glycosyl transferase, family 1, and Cupin domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1443_Mixed,_incl._Glycosyl_transferase,_family_1,_and_Cupin_domain


id: CL:1446
description: Mixed, incl. Glycosyl transferases group 1, and Cupin domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1446_Mixed,_incl._Glycosyl_transferases_group_1,_and_Cupin_domain


id: CL:1468
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1468_Mixed,_incl._Phosphoglycerate/bisphosphoglycerate_mutase,_active_site,_and_Glycosyl_transferases_group_1

description:
  Mixed, incl. Phosphoglycerate/bisphosphoglycerate mutase, active site, and Glycosyl transferases group 1


id: CL:1478
description: Pentose phosphate pathway, and Glycolysis
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1478_Pentose_phosphate_pathway,_and_Glycolysis


id: CL:1479
description: Glycolysis, and Pentose-phosphate shunt
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1479_Glycolysis,_and_Pentose-phosphate_shunt


id: CL:1484
description: Cell surface, and Hexose metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1484_Cell_surface,_and_Hexose_metabolic_process


id: CL:1508
description: Mixed, incl. Alpha-D-phosphohexomutase, C-terminal, and Nucleotidyl transferase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1508_Mixed,_incl._Alpha-D-phosphohexomutase,_C-terminal,_and_Nucleotidyl_transferase


id: CL:1528
description: Mixed, incl. Lipopolysaccharide biosynthesis, and Histone-like DNA-binding protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1528_Mixed,_incl._Lipopolysaccharide_biosynthesis,_and_Histone-like_DNA-binding_protein


id: CL:1529
description: Lipopolysaccharide biosynthesis, and Glycosyl transferase family 2
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1529_Lipopolysaccharide_biosynthesis,_and_Glycosyl_transferase_family_2


id: CL:1532
description: Glycosyl transferase, family 9, and Carbohydrate metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1532_Glycosyl_transferase,_family_9,_and_Carbohydrate_metabolism


id: CL:1555
description: Mixed, incl. Nucleotide-sugar biosynthetic process, and OmpA family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1555_Mixed,_incl._Nucleotide-sugar_biosynthetic_process,_and_OmpA_family


id: CL:1575
description: Lipopolysaccharide biosynthetic process, and Formyl transferase, C-terminal
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1575_Lipopolysaccharide_biosynthetic_process,_and_Formyl_transferase,_C-terminal


id: CL:1578
description: Lipid A biosynthetic process, and Formyl transferase, C-terminal
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1578_Lipid_A_biosynthetic_process,_and_Formyl_transferase,_C-terminal


id: CL:1602
description: Mixed, incl. Terpenoid backbone biosynthesis, and Exodeoxyribonuclease VII complex
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1602_Mixed,_incl._Terpenoid_backbone_biosynthesis,_and_Exodeoxyribonuclease_VII_complex


id: CL:1603
description: Mixed, incl. Isoprene biosynthesis, and Exodeoxyribonuclease VII complex
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1603_Mixed,_incl._Isoprene_biosynthesis,_and_Exodeoxyribonuclease_VII_complex


id: CL:1604
description: Isoprene biosynthesis, and Exodeoxyribonuclease VII complex
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1604_Isoprene_biosynthesis,_and_Exodeoxyribonuclease_VII_complex


id: CL:1605
description: Mixed, incl. Exodeoxyribonuclease VII complex, and Transsulfuration
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1605_Mixed,_incl._Exodeoxyribonuclease_VII_complex,_and_Transsulfuration


id: CL:1618
description: Isopentenyl diphosphate metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1618_Isopentenyl_diphosphate_metabolic_process


id: CL:1628
description: Mixed, incl. Ferric-uptake regulator, and Aspartic-type peptidase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1628_Mixed,_incl._Ferric-uptake_regulator,_and_Aspartic-type_peptidase_activity


id: CL:1641
description: Mixed, incl. Lipoprotein localisation LolA/LolB/LppX, and ABC3 transporter permease protein domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1641_Mixed,_incl._Lipoprotein_localisation_LolA/LolB/LppX,_and_ABC3_transporter_permease_protein_domain


id: CL:1657
description: Mixed, incl. External encapsulating structure organization, and Small molecule biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1657_Mixed,_incl._External_encapsulating_structure_organization,_and_Small_molecule_biosynthetic_process


id: CL:1658
description: Mixed, incl. External encapsulating structure organization, and Cell division
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1658_Mixed,_incl._External_encapsulating_structure_organization,_and_Cell_division


id: CL:1659
description: Mixed, incl. Membrane assembly, and Ubiquinone metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1659_Mixed,_incl._Membrane_assembly,_and_Ubiquinone_metabolic_process


id: CL:1660
description: Mixed, incl. Membrane assembly, and Metallopeptidase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1660_Mixed,_incl._Membrane_assembly,_and_Metallopeptidase_activity


id: CL:1661
description: Mixed, incl. Membrane assembly, and Disulfide oxidoreductase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1661_Mixed,_incl._Membrane_assembly,_and_Disulfide_oxidoreductase_activity


id: CL:1662
description: Mixed, incl. Membrane assembly, and Disulfide oxidoreductase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1662_Mixed,_incl._Membrane_assembly,_and_Disulfide_oxidoreductase_activity


id: CL:1663
description: Mixed, incl. Membrane assembly, and Permease LptG/LptF-related
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1663_Mixed,_incl._Membrane_assembly,_and_Permease_LptG/LptF-related


id: CL:1665
description: Membrane assembly, and Permease LptG/LptF-related
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1665_Membrane_assembly,_and_Permease_LptG/LptF-related


id: CL:1667
description: Protein insertion into membrane
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1667_Protein_insertion_into_membrane


id: CL:1689
description: Mixed, incl. Integrase, DNA-binding domain, and Regulation of catabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1689_Mixed,_incl._Integrase,_DNA-binding_domain,_and_Regulation_of_catabolic_process


id: CL:1698
description: Mixed, incl. Periplasm, and FAD-binding domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1698_Mixed,_incl._Periplasm,_and_FAD-binding_domain


id: CL:1700
description: FAD-binding domain, and Peptidase M24
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1700_FAD-binding_domain,_and_Peptidase_M24


id: CL:1719
description: Mixed, incl. Rotamase, and Metalloendopeptidase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1719_Mixed,_incl._Rotamase,_and_Metalloendopeptidase_activity


id: CL:172
description: Mixed, incl. L28p-like, and Zinc-binding ribosomal protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:172_Mixed,_incl._L28p-like,_and_Zinc-binding_ribosomal_protein


id: CL:1732
description: Mixed, incl. PmbA/TldA metallopeptidase domain 1, and Ribonuclease II/R
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1732_Mixed,_incl._PmbA/TldA_metallopeptidase_domain_1,_and_Ribonuclease_II/R


id: CL:1734
description: Mixed, incl. Ribonuclease II/R, and Vitamin transport
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1734_Mixed,_incl._Ribonuclease_II/R,_and_Vitamin_transport


id: CL:1748
description: Mixed, incl. PmbA/TldA metallopeptidase domain 1, and DAHP synthetase I/KDSA
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1748_Mixed,_incl._PmbA/TldA_metallopeptidase_domain_1,_and_DAHP_synthetase_I/KDSA


id: CL:1760
description: Mixed, incl. Ubiquinone metabolic process, and Arginine and proline metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1760_Mixed,_incl._Ubiquinone_metabolic_process,_and_Arginine_and_proline_metabolism


id: CL:1762
description: Mixed, incl. Ubiquinone biosynthesis, and Alanine racemase, N-terminal
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1762_Mixed,_incl._Ubiquinone_biosynthesis,_and_Alanine_racemase,_N-terminal


id: CL:1777
description: Mixed, incl. Methyltransferase domain, and Zinc-finger
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1777_Mixed,_incl._Methyltransferase_domain,_and_Zinc-finger


id: CL:1798
description: Mixed, incl. Regulation of cell shape, and Reproduction
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1798_Mixed,_incl._Regulation_of_cell_shape,_and_Reproduction


id: CL:1799
description: Regulation of cell shape, and Reproduction
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1799_Regulation_of_cell_shape,_and_Reproduction


id: CL:1801
description: Peptidoglycan synthesis, and Reproduction
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1801_Peptidoglycan_synthesis,_and_Reproduction


id: CL:1809
description: Mur ligase, C-terminal, and Vancomycin resistance
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1809_Mur_ligase,_C-terminal,_and_Vancomycin_resistance


id: CL:1850
description: Regulation of cell shape, and Protein lipoylation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1850_Regulation_of_cell_shape,_and_Protein_lipoylation


id: CL:1876
description: Mixed, incl. Ribosomal RNA adenine dimethylase, and Peptidase M23
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1876_Mixed,_incl._Ribosomal_RNA_adenine_dimethylase,_and_Peptidase_M23


id: CL:1878
description: Mixed, incl. tRNA synthetases class I (W and Y), and Prokaryotic transglycosylase, active site
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1878_Mixed,_incl._tRNA_synthetases_class_I_(W_and_Y),_and_Prokaryotic_transglycosylase,_active_site


id: CL:1901
description: Mixed, incl. Histidine biosynthesis, and Lipid transport
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1901_Mixed,_incl._Histidine_biosynthesis,_and_Lipid_transport


id: CL:1903
description: Histidine biosynthesis, and Phospholipid transport
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1903_Histidine_biosynthesis,_and_Phospholipid_transport


id: CL:1948
description: Lipopolysaccharide transport, and Cation/H+ exchanger
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1948_Lipopolysaccharide_transport,_and_Cation/H+_exchanger


id: CL:1962
description: Mixed, incl. Signaling, and Heme metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1962_Mixed,_incl._Signaling,_and_Heme_metabolic_process


id: CL:1963
description: Mixed, incl. Signaling, and Regulation of nitrogen utilization
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1963_Mixed,_incl._Signaling,_and_Regulation_of_nitrogen_utilization


id: CL:1964
description: Signaling, and Regulation of nitrogen utilization
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1964_Signaling,_and_Regulation_of_nitrogen_utilization


id: CL:1965
description: Signaling, and Regulation of nitrogen utilization
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1965_Signaling,_and_Regulation_of_nitrogen_utilization


id: CL:1973
description: PAS domain, and CheY-like superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:1973_PAS_domain,_and_CheY-like_superfamily


id: CL:2014
description: Glucan biosynthetic process, and Sigma-54 interaction domain, ATP-binding site 1
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2014_Glucan_biosynthetic_process,_and_Sigma-54_interaction_domain,_ATP-binding_site_1


id: CL:2024
description: Regulation of nitrogen utilization, and Ammonium/urea transporter
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2024_Regulation_of_nitrogen_utilization,_and_Ammonium/urea_transporter


id: CL:2042
description: Mixed, incl. Glycoside metabolic process, and NusB family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2042_Mixed,_incl._Glycoside_metabolic_process,_and_NusB_family


id: CL:2044
description: Mixed, incl. NusB family, and Peptide deformylase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2044_Mixed,_incl._NusB_family,_and_Peptide_deformylase


id: CL:2064
description: RutC-like superfamily, and Formamidase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2064_RutC-like_superfamily,_and_Formamidase_activity


id: CL:2080
description: Heme metabolic process, and Cytochrome complex assembly
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2080_Heme_metabolic_process,_and_Cytochrome_complex_assembly


id: CL:2081
description: Heme metabolic process, and UspA
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2081_Heme_metabolic_process,_and_UspA


id: CL:2105
description: Mixed, incl. UspA, and HemN, C-terminal
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2105_Mixed,_incl._UspA,_and_HemN,_C-terminal


id: CL:2115
description: Cytochrome complex assembly, and E1-E2 ATPase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2115_Cytochrome_complex_assembly,_and_E1-E2_ATPase


id: CL:2139
description: Queuosine metabolic process, and tRNA threonylcarbamoyladenosine modification
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2139_Queuosine_metabolic_process,_and_tRNA_threonylcarbamoyladenosine_modification


id: CL:2157
description: tRNA threonylcarbamoyladenosine modification, and Protein acylation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2157_tRNA_threonylcarbamoyladenosine_modification,_and_Protein_acylation


id: CL:2168
description: Mixed, incl. Iron-sulfur cluster assembly, and Chromosome segregation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2168_Mixed,_incl._Iron-sulfur_cluster_assembly,_and_Chromosome_segregation


id: CL:2169
description: Mixed, incl. Iron-sulfur cluster assembly, and Beta-eliminating lyase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2169_Mixed,_incl._Iron-sulfur_cluster_assembly,_and_Beta-eliminating_lyase


id: CL:2170
description: Iron-sulfur cluster assembly, and Beta-eliminating lyase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2170_Iron-sulfur_cluster_assembly,_and_Beta-eliminating_lyase


id: CL:2173
description: Iron-sulfur cluster assembly complex, and Beta-eliminating lyase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2173_Iron-sulfur_cluster_assembly_complex,_and_Beta-eliminating_lyase


id: CL:2189
description: Mixed, incl. FeS cluster biogenesis, and Polyol catabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2189_Mixed,_incl._FeS_cluster_biogenesis,_and_Polyol_catabolic_process


id: CL:2200
description: Mixed, incl. Chromosome segregation, and Iron-sulfur cluster assembly
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2200_Mixed,_incl._Chromosome_segregation,_and_Iron-sulfur_cluster_assembly


id: CL:2202
description: Chromosome segregation, and PHP domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2202_Chromosome_segregation,_and_PHP_domain


id: CL:2218
description: Mixed, incl. Glutaredoxin, and BolA protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2218_Mixed,_incl._Glutaredoxin,_and_BolA_protein


id: CL:2227
description: Mixed, incl. Prosthetic group metabolic process, and Thiamine diphosphate metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2227_Mixed,_incl._Prosthetic_group_metabolic_process,_and_Thiamine_diphosphate_metabolic_process


id: CL:2228
description: Mixed, incl. Prosthetic group metabolic process, and Thiamine diphosphate metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2228_Mixed,_incl._Prosthetic_group_metabolic_process,_and_Thiamine_diphosphate_metabolic_process


id: CL:2230
description: Mixed, incl. Prosthetic group metabolic process, and Thiamine diphosphate metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2230_Mixed,_incl._Prosthetic_group_metabolic_process,_and_Thiamine_diphosphate_metabolic_process


id: CL:2231
description: Prosthetic group metabolic process, and Thiamine diphosphate metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2231_Prosthetic_group_metabolic_process,_and_Thiamine_diphosphate_metabolic_process


id: CL:2232
description: Prosthetic group metabolic process, and Acyl-CoA N-acyltransferase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2232_Prosthetic_group_metabolic_process,_and_Acyl-CoA_N-acyltransferase


id: CL:2234
description: Prosthetic group metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2234_Prosthetic_group_metabolic_process


id: CL:2248
description: Mixed, incl. PBP domain, and Sulfur carrier activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2248_Mixed,_incl._PBP_domain,_and_Sulfur_carrier_activity


id: CL:2258
description: Thiamine diphosphate metabolic process, and NUDIX domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2258_Thiamine_diphosphate_metabolic_process,_and_NUDIX_domain


id: CL:226
description: RNA polymerase, and SNF2, N-terminal
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:226_RNA_polymerase,_and_SNF2,_N-terminal


id: CL:2272
description: Molybdate ion transport, and Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2272_Molybdate_ion_transport,_and_Cryptochrome/DNA_photolyase,_FAD-binding_domain-like_superfamily


id: CL:228
description: RNA polymerase, and Sigma-70, region 4
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:228_RNA_polymerase,_and_Sigma-70,_region_4


id: CL:2284
description: Mixed, incl. tRNA methylation, and PUA-like superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2284_Mixed,_incl._tRNA_methylation,_and_PUA-like_superfamily


id: CL:2285
description: Mixed, incl. tRNA wobble base modification, and Cellulose binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2285_Mixed,_incl._tRNA_wobble_base_modification,_and_Cellulose_binding


id: CL:2287
description: Mixed, incl. MafB19-like deaminase, and Carbon fixation pathways in prokaryotes
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2287_Mixed,_incl._MafB19-like_deaminase,_and_Carbon_fixation_pathways_in_prokaryotes


id: CL:2303
description: Mixed, incl. Cellulose binding, and Aminoglycoside phosphotransferase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2303_Mixed,_incl._Cellulose_binding,_and_Aminoglycoside_phosphotransferase


id: CL:2315
description: PUA-like superfamily, and Tetrapyrrole methylase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2315_PUA-like_superfamily,_and_Tetrapyrrole_methylase


id: CL:2328
description: Mixed, incl. PIN domain, and Elongation Factor G, domain II
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2328_Mixed,_incl._PIN_domain,_and_Elongation_Factor_G,_domain_II


id: CL:2344
description: Mixed, incl. Glycerolipid biosynthetic process, and Glutathione metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2344_Mixed,_incl._Glycerolipid_biosynthetic_process,_and_Glutathione_metabolic_process


id: CL:2345
description: Mixed, incl. Glutathione metabolic process, and Glycerolipid biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2345_Mixed,_incl._Glutathione_metabolic_process,_and_Glycerolipid_biosynthetic_process


id: CL:2346
description: Mixed, incl. Glycerolipid biosynthetic process, and CDP-alcohol phosphatidyltransferase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2346_Mixed,_incl._Glycerolipid_biosynthetic_process,_and_CDP-alcohol_phosphatidyltransferase


id: CL:2359
description: Glutathione S-transferase, N-terminal domain, and Nitroreductase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2359_Glutathione_S-transferase,_N-terminal_domain,_and_Nitroreductase


id: CL:2368
description: Mixed, incl. Glycerolipid biosynthetic process, and Redoxin
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2368_Mixed,_incl._Glycerolipid_biosynthetic_process,_and_Redoxin


id: CL:2380
description: Mixed, incl. Heme binding, and Sulfur metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2380_Mixed,_incl._Heme_binding,_and_Sulfur_metabolism


id: CL:2381
description: Mixed, incl. Heme binding, and Anaerobic respiration
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2381_Mixed,_incl._Heme_binding,_and_Anaerobic_respiration


id: CL:2382
description: Mixed, incl. Heme binding, and Anaerobic respiration
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2382_Mixed,_incl._Heme_binding,_and_Anaerobic_respiration


id: CL:2384
description: Mixed, incl. Heme binding, and Anaerobic respiration
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2384_Mixed,_incl._Heme_binding,_and_Anaerobic_respiration


id: CL:2386
description: Heme binding, and Anaerobic respiration
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2386_Heme_binding,_and_Anaerobic_respiration


id: CL:2388
description: Anaerobic respiration, and Heme binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2388_Anaerobic_respiration,_and_Heme_binding


id: CL:2391
description: Anaerobic respiration, and Cytochrome c
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2391_Anaerobic_respiration,_and_Cytochrome_c


id: CL:2402
description: Mixed, incl. Respiratory chain complex IV, and C-type lectin fold
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2402_Mixed,_incl._Respiratory_chain_complex_IV,_and_C-type_lectin_fold


id: CL:2433
description: Mixed, incl. Oxidative phosphorylation, and Quorum sensing
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2433_Mixed,_incl._Oxidative_phosphorylation,_and_Quorum_sensing


id: CL:2452
description: Mixed, incl. BFD-like [2Fe-2S] binding domain, and Nitrogen metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2452_Mixed,_incl._BFD-like_[2Fe-2S]_binding_domain,_and_Nitrogen_metabolism


id: CL:2455
description: Mixed, incl. BFD-like [2Fe-2S] binding domain, and Protein kinase domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2455_Mixed,_incl._BFD-like_[2Fe-2S]_binding_domain,_and_Protein_kinase_domain


id: CL:246
description: DEAD/DEAH box helicase domain, and Cytosolic ribosome
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:246_DEAD/DEAH_box_helicase_domain,_and_Cytosolic_ribosome


id: CL:2476
description: Dephosphorylation, and Lipoprotein metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2476_Dephosphorylation,_and_Lipoprotein_metabolic_process


id: CL:2490
description: Mixed, incl. Sulfur metabolism, and mRNA processing
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2490_Mixed,_incl._Sulfur_metabolism,_and_mRNA_processing


id: CL:2492
description: Sulfate reduction, and Sulfate adenylyltransferase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2492_Sulfate_reduction,_and_Sulfate_adenylyltransferase_activity


id: CL:2505
description: Mixed, incl. mRNA processing, and Sigma-54 interaction domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2505_Mixed,_incl._mRNA_processing,_and_Sigma-54_interaction_domain


id: CL:2522
description: Mixed, incl. Protein transport, and Porin activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2522_Mixed,_incl._Protein_transport,_and_Porin_activity


id: CL:2523
description: Mixed, incl. Ion transmembrane transport, and Cilium
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2523_Mixed,_incl._Ion_transmembrane_transport,_and_Cilium


id: CL:2524
description: Mostly uncharacterized, incl. Cilium, and Gram-negative porin
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2524_Mostly_uncharacterized,_incl._Cilium,_and_Gram-negative_porin


id: CL:2525
description: Mostly uncharacterized, incl. Gram-negative porin, and Phasin
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2525_Mostly_uncharacterized,_incl._Gram-negative_porin,_and_Phasin


id: CL:2526
description: Mixed, incl. Gram-negative porin, and Phasin
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2526_Mixed,_incl._Gram-negative_porin,_and_Phasin


id: CL:2527
description: Mixed, incl. Gram-negative porin, and Phasin
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2527_Mixed,_incl._Gram-negative_porin,_and_Phasin


id: CL:2538
description: Mixed, incl. TRAM domain, and NodB homology domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2538_Mixed,_incl._TRAM_domain,_and_NodB_homology_domain


id: CL:2547
description: Mixed, incl. Caprolactam degradation, and Oxidoreductase molybdopterin binding domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2547_Mixed,_incl._Caprolactam_degradation,_and_Oxidoreductase_molybdopterin_binding_domain


id: CL:2557
description: Mixed, incl. 3Fe-4S, and Sulfate transport
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2557_Mixed,_incl._3Fe-4S,_and_Sulfate_transport


id: CL:2572
description: Mixed, incl. LexA-like, and Dioxygenase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2572_Mixed,_incl._LexA-like,_and_Dioxygenase


id: CL:258
description: Protein transport by the Sec complex, and Protein-transporting ATPase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:258_Protein_transport_by_the_Sec_complex,_and_Protein-transporting_ATPase_activity


id: CL:2587
description: Mixed, incl. Protein transport, and Molecular transducer activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2587_Mixed,_incl._Protein_transport,_and_Molecular_transducer_activity


id: CL:2588
description: Biopolymer transport protein ExbD/TolR, and Siderophore transmembrane transporter activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2588_Biopolymer_transport_protein_ExbD/TolR,_and_Siderophore_transmembrane_transporter_activity


id: CL:2590
description: Molecular transducer activity, and Prokaryotic cytochrome b561
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2590_Molecular_transducer_activity,_and_Prokaryotic_cytochrome_b561


id: CL:2614
description: Mixed, incl. Periplasm, and OmpA family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2614_Mixed,_incl._Periplasm,_and_OmpA_family


id: CL:2639
description: Mixed, incl. Phosphate ion transport, and Polyphosphate kinase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2639_Mixed,_incl._Phosphate_ion_transport,_and_Polyphosphate_kinase_activity


id: CL:2641
description: Mixed, incl. SNARE associated Golgi protein, and Tricarboxylic acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2641_Mixed,_incl._SNARE_associated_Golgi_protein,_and_Tricarboxylic_acid_metabolic_process


id: CL:2644
description: Mixed, incl. SNARE associated Golgi protein, and Glycosyl transferase family 2
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2644_Mixed,_incl._SNARE_associated_Golgi_protein,_and_Glycosyl_transferase_family_2


id: CL:2663
description: Phosphate ion transport, and Polyphosphate kinase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2663_Phosphate_ion_transport,_and_Polyphosphate_kinase_activity


id: CL:2685
description: Mixed, incl. TatD related DNase, and KAP family P-loop domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2685_Mixed,_incl._TatD_related_DNase,_and_KAP_family_P-loop_domain


id: CL:2703
description: Mixed, incl. Base-excision repair, and Nucleus
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2703_Mixed,_incl._Base-excision_repair,_and_Nucleus


id: CL:2705
description: HhH-GPD domain, and NTF2-like domain superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2705_HhH-GPD_domain,_and_NTF2-like_domain_superfamily


id: CL:2719
description: Mixed, incl. Nucleoside salvage, and Protein adenylylation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2719_Mixed,_incl._Nucleoside_salvage,_and_Protein_adenylylation


id: CL:2728
description: Mixed, incl. Transmembrane transporter activity, and Respiratory electron transport chain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2728_Mixed,_incl._Transmembrane_transporter_activity,_and_Respiratory_electron_transport_chain


id: CL:2729
description: Mixed, incl. Transmembrane transporter activity, and Respiratory electron transport chain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2729_Mixed,_incl._Transmembrane_transporter_activity,_and_Respiratory_electron_transport_chain


id: CL:2730
description: Mixed, incl. Acriflavin resistance protein, and Outer membrane efflux protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2730_Mixed,_incl._Acriflavin_resistance_protein,_and_Outer_membrane_efflux_protein


id: CL:2731
description: Mixed, incl. Acriflavin resistance protein, and RND efflux pump, membrane fusion protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2731_Mixed,_incl._Acriflavin_resistance_protein,_and_RND_efflux_pump,_membrane_fusion_protein


id: CL:2732
description: Mixed, incl. Acriflavin resistance protein, and RND efflux pump, membrane fusion protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2732_Mixed,_incl._Acriflavin_resistance_protein,_and_RND_efflux_pump,_membrane_fusion_protein


id: CL:2734
description: Mixed, incl. Acriflavin resistance protein, and RND efflux pump, membrane fusion protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2734_Mixed,_incl._Acriflavin_resistance_protein,_and_RND_efflux_pump,_membrane_fusion_protein


id: CL:2735
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2735_Mixed,_incl._Acriflavin_resistance_protein,_and_RND_efflux_pump,_membrane_fusion_protein,_barrel-sandwich_domain

description:
  Mixed, incl. Acriflavin resistance protein, and RND efflux pump, membrane fusion protein, barrel-sandwich domain


id: CL:2736
description: Acriflavin resistance protein, and RND efflux pump, membrane fusion protein, barrel-sandwich domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2736_Acriflavin_resistance_protein,_and_RND_efflux_pump,_membrane_fusion_protein,_barrel-sandwich_domain


id: CL:2737
description: AcrB/AcrD/AcrF family, and RND efflux pump, membrane fusion protein, barrel-sandwich domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2737_AcrB/AcrD/AcrF_family,_and_RND_efflux_pump,_membrane_fusion_protein,_barrel-sandwich_domain


id: CL:2748
description: MMPL family, and OsmC/Ohr family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2748_MMPL_family,_and_OsmC/Ohr_family


id: CL:2757
description: Mixed, incl. Putative beta-barrel porin-2, OmpL-like. bbp2, and AcrB/AcrD/AcrF family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2757_Mixed,_incl._Putative_beta-barrel_porin-2,_OmpL-like._bbp2,_and_AcrB/AcrD/AcrF_family


id: CL:2767
description: Mixed, incl. MMPL family, and Nicotinamide nucleotide metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2767_Mixed,_incl._MMPL_family,_and_Nicotinamide_nucleotide_metabolic_process


id: CL:2788
description: Mixed, incl. MarR-type HTH domain, and Membrane fusion protein, biotin-lipoyl like domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2788_Mixed,_incl._MarR-type_HTH_domain,_and_Membrane_fusion_protein,_biotin-lipoyl_like_domain


id: CL:2797
description: Mixed, incl. YceI-like domain, and Maf-like protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2797_Mixed,_incl._YceI-like_domain,_and_Maf-like_protein


id: CL:2799
description: Mixed, incl. TatD related DNase, and dTTP metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2799_Mixed,_incl._TatD_related_DNase,_and_dTTP_metabolic_process


id: CL:281
description: Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:281_Aminoacyl-tRNA_synthetase,_class_Ia,_anticodon-binding


id: CL:2823
description: Mixed, incl. Type 1 protein exporter, and Helix_turn_helix, Lux Regulon
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2823_Mixed,_incl._Type_1_protein_exporter,_and_Helix_turn_helix,_Lux_Regulon


id: CL:2838
description: Mostly uncharacterized, incl. Aerobic electron transport chain, and NADH oxidation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2838_Mostly_uncharacterized,_incl._Aerobic_electron_transport_chain,_and_NADH_oxidation


id: CL:2839
description: Mixed, incl. Aerobic electron transport chain, and NADH oxidation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2839_Mixed,_incl._Aerobic_electron_transport_chain,_and_NADH_oxidation


id: CL:2841
description: Mixed, incl. NADH oxidation, and Protein of unknown function (DUF2892)
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2841_Mixed,_incl._NADH_oxidation,_and_Protein_of_unknown_function_(DUF2892)


id: CL:2860
description: Mixed, incl. HTH ArsR-type DNA-binding domain, and Sulfite exporter TauE/SafE
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2860_Mixed,_incl._HTH_ArsR-type_DNA-binding_domain,_and_Sulfite_exporter_TauE/SafE


id: CL:2870
description: Mixed, incl. Alpha/beta hydrolase family, and PHB de-polymerase C-terminus
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2870_Mixed,_incl._Alpha/beta_hydrolase_family,_and_PHB_de-polymerase_C-terminus


id: CL:2871
description: Mixed, incl. Alpha/beta hydrolase family, and PHB de-polymerase C-terminus
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2871_Mixed,_incl._Alpha/beta_hydrolase_family,_and_PHB_de-polymerase_C-terminus


id: CL:2884
description: Mixed, incl. MarR-type HTH domain, and Peroxiredoxin activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2884_Mixed,_incl._MarR-type_HTH_domain,_and_Peroxiredoxin_activity


id: CL:2893
description: Mixed, incl. NAD(P)+ transhydrogenase activity, and Sugar fermentation stimulation protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2893_Mixed,_incl._NAD(P)+_transhydrogenase_activity,_and_Sugar_fermentation_stimulation_protein


id: CL:2895
description: Mixed, incl. Sugar fermentation stimulation protein, and Pirin
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2895_Mixed,_incl._Sugar_fermentation_stimulation_protein,_and_Pirin


id: CL:2915
description: NAD(P)+ transhydrogenase activity, and Aminoglycan catabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2915_NAD(P)+_transhydrogenase_activity,_and_Aminoglycan_catabolic_process


id: CL:2924
description: Mostly uncharacterized, incl. DNA photolyase, and Negative regulation of biological process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2924_Mostly_uncharacterized,_incl._DNA_photolyase,_and_Negative_regulation_of_biological_process


id: CL:2925
description: Mostly uncharacterized, incl. DNA photolyase, and Cupredoxin
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2925_Mostly_uncharacterized,_incl._DNA_photolyase,_and_Cupredoxin


id: CL:2927
description: Mixed, incl. DNA photolyase, and Cupredoxin
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2927_Mixed,_incl._DNA_photolyase,_and_Cupredoxin


id: CL:2930
description: DNA photolyase, and Naphthalene degradation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2930_DNA_photolyase,_and_Naphthalene_degradation


id: CL:294
description: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, and Amidase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:294_glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)_activity,_and_Amidase


id: CL:2945
description: Mixed, incl. Cupredoxin, and Valyl-tRNA synthetase, tRNA-binding arm superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2945_Mixed,_incl._Cupredoxin,_and_Valyl-tRNA_synthetase,_tRNA-binding_arm_superfamily


id: CL:2962
description: Mixed, incl. Protein deacylation, and Chlorophyll metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2962_Mixed,_incl._Protein_deacylation,_and_Chlorophyll_metabolic_process


id: CL:2975
description: Mixed, incl. Symporter activity, and Protein dephosphorylation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2975_Mixed,_incl._Symporter_activity,_and_Protein_dephosphorylation


id: CL:2978
description: Symporter activity, and [protein-PII] uridylyltransferase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2978_Symporter_activity,_and_[protein-PII]_uridylyltransferase_activity


id: CL:2989
description: Mixed, incl. Protein dephosphorylation, and PEP-utilising enzyme, C-terminal
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2989_Mixed,_incl._Protein_dephosphorylation,_and_PEP-utilising_enzyme,_C-terminal


id: CL:2998
description: Mixed, incl. Glutathione transferase family, and HotDog domain superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:2998_Mixed,_incl._Glutathione_transferase_family,_and_HotDog_domain_superfamily


id: CL:3007
description: Mixed, incl. Protein secretion, and Cytolysis
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3007_Mixed,_incl._Protein_secretion,_and_Cytolysis


id: CL:3008
description: Protein transport across the cell outer membrane, and Bacterial secretion system
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3008_Protein_transport_across_the_cell_outer_membrane,_and_Bacterial_secretion_system


id: CL:3010
description: Mixed, incl. Protein transport across the cell outer membrane, and Pilus assembly
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3010_Mixed,_incl._Protein_transport_across_the_cell_outer_membrane,_and_Pilus_assembly


id: CL:3036
description: Mixed, incl. Transporter-associated domain, and Type IV leader peptidase family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3036_Mixed,_incl._Transporter-associated_domain,_and_Type_IV_leader_peptidase_family


id: CL:3045
description: Mixed, incl. Cytolysis, and Ferric iron binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3045_Mixed,_incl._Cytolysis,_and_Ferric_iron_binding


id: CL:3047
description: Cytolysis, and Ferric iron binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3047_Cytolysis,_and_Ferric_iron_binding


id: CL:3057
description: Mixed, incl. LTXXQ motif family protein, and Sugar (and other) transporter
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3057_Mixed,_incl._LTXXQ_motif_family_protein,_and_Sugar_(and_other)_transporter


id: CL:3066
description: Mixed, incl. Carbon fixation, and LysR, substrate-binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3066_Mixed,_incl._Carbon_fixation,_and_LysR,_substrate-binding


id: CL:3067
description: Mixed, incl. Carbon fixation, and Nitrogen metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3067_Mixed,_incl._Carbon_fixation,_and_Nitrogen_metabolism


id: CL:3069
description: Mixed, incl. Carbon fixation, and Porphyrin and chlorophyll metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3069_Mixed,_incl._Carbon_fixation,_and_Porphyrin_and_chlorophyll_metabolism


id: CL:3070
description: Mixed, incl. Bacterial microcompartment, and Ferric iron binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3070_Mixed,_incl._Bacterial_microcompartment,_and_Ferric_iron_binding


id: CL:3089
description: Mixed, incl. CbbQ/NirQ/NorQ, C-terminal, and Probable inorganic carbon transporter subunit DabA
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3089_Mixed,_incl._CbbQ/NirQ/NorQ,_C-terminal,_and_Probable_inorganic_carbon_transporter_subunit_DabA


id: CL:309
description: Mixed, incl. LUD domain, and K homology domain-like, alpha/beta
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:309_Mixed,_incl._LUD_domain,_and_K_homology_domain-like,_alpha/beta


id: CL:3100
description: Mixed, incl. Photosynthesis, dark reaction, and HAD hydrolase, subfamily IA
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3100_Mixed,_incl._Photosynthesis,_dark_reaction,_and_HAD_hydrolase,_subfamily_IA


id: CL:3102
description: Photosynthesis, dark reaction, and CbbQ/NirQ/NorQ, C-terminal
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3102_Photosynthesis,_dark_reaction,_and_CbbQ/NirQ/NorQ,_C-terminal


id: CL:311
description: K homology domain-like, alpha/beta, and PUA domain superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:311_K_homology_domain-like,_alpha/beta,_and_PUA_domain_superfamily


id: CL:3127
description: Mixed, incl. STAS domain, and Ubiquinone binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3127_Mixed,_incl._STAS_domain,_and_Ubiquinone_binding


id: CL:3137
description: LysR, substrate-binding, and DsrEFH-like
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3137_LysR,_substrate-binding,_and_DsrEFH-like


id: CL:3155
description: Mixed, incl. Amino acid transport, and Nickel cation binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3155_Mixed,_incl._Amino_acid_transport,_and_Nickel_cation_binding


id: CL:3156
description: Amino acid transport, and Nickel cation binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3156_Amino_acid_transport,_and_Nickel_cation_binding


id: CL:3157
description: Amino acid transport, and ABC transporter, permease
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3157_Amino_acid_transport,_and_ABC_transporter,_permease


id: CL:3158
description: Amino acid transport, and ABC transporter, permease
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3158_Amino_acid_transport,_and_ABC_transporter,_permease


id: CL:3160
description: Leucine binding, and ABC transporter, permease
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3160_Leucine_binding,_and_ABC_transporter,_permease


id: CL:3169
description: Leu/Ile/Val-binding protein, and ABC transporter, permease
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3169_Leu/Ile/Val-binding_protein,_and_ABC_transporter,_permease


id: CL:3179
description: Leucine binding, and ABC transporter, permease
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3179_Leucine_binding,_and_ABC_transporter,_permease


id: CL:3205
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3205_Mixed,_incl._Nickel_cation_binding,_and_Hydrolase_activity,_acting_on_carbon-nitrogen_(but_not_peptide)_bonds,_in_linear_amides

description:
  Mixed, incl. Nickel cation binding, and Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides


id: CL:3222
description: ABC transporter, permease, and Periplasmic binding protein domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3222_ABC_transporter,_permease,_and_Periplasmic_binding_protein_domain


id: CL:3237
description: Mostly uncharacterized, incl. Arginine and proline metabolism, and WYL domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3237_Mostly_uncharacterized,_incl._Arginine_and_proline_metabolism,_and_WYL_domain


id: CL:3239
description: Mixed, incl. OsmC/Ohr family, and Protein kinase domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3239_Mixed,_incl._OsmC/Ohr_family,_and_Protein_kinase_domain


id: CL:3241
description: Mixed, incl. Protein kinase domain, and Protein dephosphorylation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3241_Mixed,_incl._Protein_kinase_domain,_and_Protein_dephosphorylation


id: CL:3261
description: Mixed, incl. WYL domain, and HNH nuclease
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3261_Mixed,_incl._WYL_domain,_and_HNH_nuclease


id: CL:3272
description: Mixed, incl. Transposition, and DNA integration
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3272_Mixed,_incl._Transposition,_and_DNA_integration


id: CL:3273
description: Mixed, incl. DDE transposase sub-family, and Response to arsenic-containing substance
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3273_Mixed,_incl._DDE_transposase_sub-family,_and_Response_to_arsenic-containing_substance


id: CL:3274
description: Mixed, incl. DDE transposase sub-family, and Response to arsenic-containing substance
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3274_Mixed,_incl._DDE_transposase_sub-family,_and_Response_to_arsenic-containing_substance


id: CL:3276
description: Mixed, incl. Response to arsenic-containing substance, and Thioesterase domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3276_Mixed,_incl._Response_to_arsenic-containing_substance,_and_Thioesterase_domain


id: CL:3301
description: Mixed, incl. NADH:flavin oxidoreductase/NADH oxidase, N-terminal, and HPP family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3301_Mixed,_incl._NADH:flavin_oxidoreductase/NADH_oxidase,_N-terminal,_and_HPP_family


id: CL:3303
description: Mixed, incl. HPP family, and Nitroreductase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3303_Mixed,_incl._HPP_family,_and_Nitroreductase


id: CL:3326
description: Mixed, incl. RepB plasmid partition, and Transposition
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3326_Mixed,_incl._RepB_plasmid_partition,_and_Transposition


id: CL:3327
description: Mixed, incl. Carbon fixation pathways in prokaryotes, and Helix-turn-helix domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3327_Mixed,_incl._Carbon_fixation_pathways_in_prokaryotes,_and_Helix-turn-helix_domain


id: CL:334
description: Mixed, incl. RF-1 domain, and DHHA1 domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:334_Mixed,_incl._RF-1_domain,_and_DHHA1_domain


id: CL:3342
description: RepB plasmid partition, and Transposase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3342_RepB_plasmid_partition,_and_Transposase


id: CL:3351
description: Mostly uncharacterized, incl. BON domain, and Toxin-antitoxin complex
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3351_Mostly_uncharacterized,_incl._BON_domain,_and_Toxin-antitoxin_complex


id: CL:3353
description: Mixed, incl. Protein refolding, and Peroxiredoxin, AhpC-type
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3353_Mixed,_incl._Protein_refolding,_and_Peroxiredoxin,_AhpC-type


id: CL:3372
description: Mixed, incl. Mycolic acid cyclopropane synthase, and Major Facilitator Superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3372_Mixed,_incl._Mycolic_acid_cyclopropane_synthase,_and_Major_Facilitator_Superfamily


id: CL:3373
description: Mixed, incl. Lactone metabolic process, and Mycolic acid cyclopropane synthase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3373_Mixed,_incl._Lactone_metabolic_process,_and_Mycolic_acid_cyclopropane_synthase


id: CL:3386
description: Mixed, incl. Lipid-binding, and Methyltransferase domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3386_Mixed,_incl._Lipid-binding,_and_Methyltransferase_domain


id: CL:3400
description: Mixed, incl. Quorum sensing, and Transmembrane
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3400_Mixed,_incl._Quorum_sensing,_and_Transmembrane


id: CL:3403
description: Mixed, incl. Secretion by the type IV secretion system, and Transmembrane
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3403_Mixed,_incl._Secretion_by_the_type_IV_secretion_system,_and_Transmembrane


id: CL:3404
description: Mixed, incl. Secretion by the type IV secretion system, and Quorum sensing
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3404_Mixed,_incl._Secretion_by_the_type_IV_secretion_system,_and_Quorum_sensing


id: CL:3405
description: Mixed, incl. Secretion by the type IV secretion system, and Quorum sensing
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3405_Mixed,_incl._Secretion_by_the_type_IV_secretion_system,_and_Quorum_sensing


id: CL:3407
description: Mixed, incl. Secretion by the type IV secretion system, and Response to external stimulus
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3407_Mixed,_incl._Secretion_by_the_type_IV_secretion_system,_and_Response_to_external_stimulus


id: CL:3408
description: Mixed, incl. Secretion by the type IV secretion system, and VirB8 protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3408_Mixed,_incl._Secretion_by_the_type_IV_secretion_system,_and_VirB8_protein


id: CL:3409
description: Mixed, incl. Secretion by the type IV secretion system, and VirB8 protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3409_Mixed,_incl._Secretion_by_the_type_IV_secretion_system,_and_VirB8_protein


id: CL:3410
description: Mixed, incl. Protein secretion by the type IV secretion system, and VirB8 protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3410_Mixed,_incl._Protein_secretion_by_the_type_IV_secretion_system,_and_VirB8_protein


id: CL:3412
description: Mixed, incl. Type IV secretion-system coupling protein DNA-binding domain, and TrbC/VIRB2 pilin
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3412_Mixed,_incl._Type_IV_secretion-system_coupling_protein_DNA-binding_domain,_and_TrbC/VIRB2_pilin


id: CL:3432
description: Protein secretion by the type IV secretion system, and VirB8 protein
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3432_Protein_secretion_by_the_type_IV_secretion_system,_and_VirB8_protein


id: CL:3443
description: Mixed, incl. TrbC/VIRB2 pilin, and Response to virus
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3443_Mixed,_incl._TrbC/VIRB2_pilin,_and_Response_to_virus


id: CL:3452
description: Mixed, incl. AAA domain, and Peptidase S26
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3452_Mixed,_incl._AAA_domain,_and_Peptidase_S26


id: CL:3456
description: Mixed, incl. AAA domain, and Peptidase S26
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3456_Mixed,_incl._AAA_domain,_and_Peptidase_S26


id: CL:3473
description: Mixed, incl. WYL domain, and AAA domain, group 15
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3473_Mixed,_incl._WYL_domain,_and_AAA_domain,_group_15


id: CL:3493
description: Mostly uncharacterized, incl. ABC-2 transporter, and ATPase regulator activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3493_Mostly_uncharacterized,_incl._ABC-2_transporter,_and_ATPase_regulator_activity


id: CL:3495
description: Mixed, incl. ABC-2 transporter, and Lipoprotein metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3495_Mixed,_incl._ABC-2_transporter,_and_Lipoprotein_metabolic_process


id: CL:3515
description: Mixed, incl. Pseudouridine synthase, RsuA/RluB/E/F, conserved site, and Carbohydrate transport
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3515_Mixed,_incl._Pseudouridine_synthase,_RsuA/RluB/E/F,_conserved_site,_and_Carbohydrate_transport


id: CL:3527
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3527_Mixed,_incl._Type_II_secretion_system_(T2SS),_protein_F,_and_Secretion_by_the_type_IV_secretion_system

description:
  Mixed, incl. Type II secretion system (T2SS), protein F, and Secretion by the type IV secretion system


id: CL:3529
description: Type II secretion system (T2SS), protein F, and GspD/PilQ family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3529_Type_II_secretion_system_(T2SS),_protein_F,_and_GspD/PilQ_family


id: CL:354
description: Mixed, incl. mRNA catabolic process, and Pseudouridine synthase, RluC/RluD
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:354_Mixed,_incl._mRNA_catabolic_process,_and_Pseudouridine_synthase,_RluC/RluD


id: CL:3550
description: Mixed, incl. P-type ATPase, and Xylose isomerase-like superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3550_Mixed,_incl._P-type_ATPase,_and_Xylose_isomerase-like_superfamily


id: CL:3552
description: Mixed, incl. E1-E2 ATPase, and Xylose isomerase-like superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3552_Mixed,_incl._E1-E2_ATPase,_and_Xylose_isomerase-like_superfamily


id: CL:356
description: Pseudouridine synthase, RluC/RluD, and 50S ribosome-binding GTPase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:356_Pseudouridine_synthase,_RluC/RluD,_and_50S_ribosome-binding_GTPase


id: CL:3578
description: Mostly uncharacterized, incl. Inorganic anion transmembrane transport, and Transposase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3578_Mostly_uncharacterized,_incl._Inorganic_anion_transmembrane_transport,_and_Transposase_activity


id: CL:3580
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3580_Mostly_uncharacterized,_incl._Exodeoxyribonuclease_V_complex,_and_Type_IV_conjugative_transfer_protein_TrbJ

description:
  Mostly uncharacterized, incl. Exodeoxyribonuclease V complex, and Type IV conjugative transfer protein TrbJ


id: CL:3581
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3581_Mostly_uncharacterized,_incl._Type_IV_conjugative_transfer_protein_TrbJ,_and_Bacterial_secretion_system

description:
  Mostly uncharacterized, incl. Type IV conjugative transfer protein TrbJ, and Bacterial secretion system


id: CL:3583
description: Mixed, incl. Type IV conjugative transfer protein TrbJ, and Coiled coil
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3583_Mixed,_incl._Type_IV_conjugative_transfer_protein_TrbJ,_and_Coiled_coil


id: CL:3606
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3606_Mixed,_incl._Exodeoxyribonuclease_V_complex,_and_Calcineurin-like_phosphoesterase_superfamily_domain

description:
  Mixed, incl. Exodeoxyribonuclease V complex, and Calcineurin-like phosphoesterase superfamily domain


id: CL:3618
description: Mixed, incl. Inorganic anion transmembrane transport, and LexA-like
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3618_Mixed,_incl._Inorganic_anion_transmembrane_transport,_and_LexA-like


id: CL:3631
description: Mixed, incl. DNA integration, and DNA binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3631_Mixed,_incl._DNA_integration,_and_DNA_binding


id: CL:3632
description: Mixed, incl. DNA integration, and Putative DNA-binding domain superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3632_Mixed,_incl._DNA_integration,_and_Putative_DNA-binding_domain_superfamily


id: CL:3633
description: Mixed, incl. DNA integration, and Cro/C1-type helix-turn-helix domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3633_Mixed,_incl._DNA_integration,_and_Cro/C1-type_helix-turn-helix_domain


id: CL:3635
description: Mixed, incl. DNA integration, and Cro/C1-type helix-turn-helix domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3635_Mixed,_incl._DNA_integration,_and_Cro/C1-type_helix-turn-helix_domain


id: CL:3636
description: Mixed, incl. DNA integration, and IrrE N-terminal-like domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3636_Mixed,_incl._DNA_integration,_and_IrrE_N-terminal-like_domain


id: CL:3637
description: Mixed, incl. DNA integration, and IrrE N-terminal-like domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3637_Mixed,_incl._DNA_integration,_and_IrrE_N-terminal-like_domain


id: CL:3638
description: Mixed, incl. DNA strand exchange activity, and DNA integration
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3638_Mixed,_incl._DNA_strand_exchange_activity,_and_DNA_integration


id: CL:3641
description: Mixed, incl. DNA strand exchange activity, and PD-(D/E)XK endonuclease-like domain superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3641_Mixed,_incl._DNA_strand_exchange_activity,_and_PD-(D/E)XK_endonuclease-like_domain_superfamily


id: CL:3643
description: DNA strand exchange activity, and DNA integration
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3643_DNA_strand_exchange_activity,_and_DNA_integration


id: CL:3653
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3653_Mixed,_incl._PD-(D/E)XK_endonuclease-like_domain_superfamily,_and_Putative_DNA-binding_domain_superfamily

description:
  Mixed, incl. PD-(D/E)XK endonuclease-like domain superfamily, and Putative DNA-binding domain superfamily


id: CL:3664
description: Mixed, incl. DNA strand exchange activity, and IrrE N-terminal-like domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3664_Mixed,_incl._DNA_strand_exchange_activity,_and_IrrE_N-terminal-like_domain


id: CL:3676
description: Mixed, incl. DNA strand exchange activity, and IrrE N-terminal-like domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3676_Mixed,_incl._DNA_strand_exchange_activity,_and_IrrE_N-terminal-like_domain


id: CL:3694
description: Mostly uncharacterized, incl. IrrE N-terminal-like domain, and Helix-turn-helix domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3694_Mostly_uncharacterized,_incl._IrrE_N-terminal-like_domain,_and_Helix-turn-helix_domain


id: CL:3696
description: Mixed, incl. IrrE N-terminal-like domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3696_Mixed,_incl._IrrE_N-terminal-like_domain


id: CL:3706
description: Mixed, incl. Helix-turn-helix domain, and SOS response
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3706_Mixed,_incl._Helix-turn-helix_domain,_and_SOS_response


id: CL:371
description: NUDIX hydrolase, conserved site, and Ribonuclease II/R
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:371_NUDIX_hydrolase,_conserved_site,_and_Ribonuclease_II/R


id: CL:3715
description: Mixed, incl. Helix-turn-helix domain, and Cro/C1-type helix-turn-helix domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3715_Mixed,_incl._Helix-turn-helix_domain,_and_Cro/C1-type_helix-turn-helix_domain


id: CL:3731
description: Mixed, incl. RES domain, and Antitoxin Xre-like, helix-turn-helix domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3731_Mixed,_incl._RES_domain,_and_Antitoxin_Xre-like,_helix-turn-helix_domain


id: CL:3733
description: RES domain, and Antitoxin Xre-like, helix-turn-helix domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3733_RES_domain,_and_Antitoxin_Xre-like,_helix-turn-helix_domain


id: CL:3753
description: Mixed, incl. Viral process, and Regulation of growth
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3753_Mixed,_incl._Viral_process,_and_Regulation_of_growth


id: CL:3772
description: Mixed, incl. Fido domain, and DNA modification
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3772_Mixed,_incl._Fido_domain,_and_DNA_modification


id: CL:3773
description: Mixed, incl. Fido domain, and DNA modification
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3773_Mixed,_incl._Fido_domain,_and_DNA_modification


id: CL:3774
description: Mixed, incl. DNA modification, and Fido domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3774_Mixed,_incl._DNA_modification,_and_Fido_domain


id: CL:3776
description: DNA modification, and Fido domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3776_DNA_modification,_and_Fido_domain


id: CL:3788
description: Mixed, incl. Recombinational repair, and Integrase, catalytic core
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3788_Mixed,_incl._Recombinational_repair,_and_Integrase,_catalytic_core


id: CL:3802
description: Fido domain-containing protein, and Cardiolipin metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3802_Fido_domain-containing_protein,_and_Cardiolipin_metabolic_process


id: CL:3814
description: Mixed, incl. Transposase IS3/IS911family, and Cro/C1-type helix-turn-helix domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3814_Mixed,_incl._Transposase_IS3/IS911family,_and_Cro/C1-type_helix-turn-helix_domain


id: CL:3817
description: Mixed, incl. Regulation of cell division, and Cro/C1-type helix-turn-helix domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3817_Mixed,_incl._Regulation_of_cell_division,_and_Cro/C1-type_helix-turn-helix_domain


id: CL:3828
description: Transposase IS3/IS911family, and Regulation of growth
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3828_Transposase_IS3/IS911family,_and_Regulation_of_growth


id: CL:385
description: Mixed, incl. Hydrolase activity, acting on glycosyl bonds, and Beta-lactamase/transpeptidase-like
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:385_Mixed,_incl._Hydrolase_activity,_acting_on_glycosyl_bonds,_and_Beta-lactamase/transpeptidase-like


id: CL:3852
description: Mixed, incl. Transposition, and Nucleoside triphosphate catabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:3852_Mixed,_incl._Transposition,_and_Nucleoside_triphosphate_catabolic_process


id: CL:387
description: Mixed, incl. Small GTP-binding protein domain, and Serine-type endopeptidase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:387_Mixed,_incl._Small_GTP-binding_protein_domain,_and_Serine-type_endopeptidase_activity


id: CL:389
description: Mixed, incl. Peptidase S26, and Positive regulation of gene expression
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:389_Mixed,_incl._Peptidase_S26,_and_Positive_regulation_of_gene_expression


id: CL:403
description: Mixed, incl. PDZ domain 6, and Regulation of carbohydrate metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:403_Mixed,_incl._PDZ_domain_6,_and_Regulation_of_carbohydrate_metabolic_process


id: CL:421
description: Mixed, incl. Band 7 domain, and PP-loop family
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:421_Mixed,_incl._Band_7_domain,_and_PP-loop_family


id: CL:422
description: Mixed, incl. Band 7 domain, and LSM domain superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:422_Mixed,_incl._Band_7_domain,_and_LSM_domain_superfamily


id: CL:434
description: Mixed, incl. PP-loop family, and Anticodon-binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:434_Mixed,_incl._PP-loop_family,_and_Anticodon-binding


id: CL:449
description: Mixed, incl. Stress response, and Thioredoxin domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:449_Mixed,_incl._Stress_response,_and_Thioredoxin_domain


id: CL:450
description: Mixed, incl. Stress response, and Protein folding chaperone
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:450_Mixed,_incl._Stress_response,_and_Protein_folding_chaperone


id: CL:452
description: Stress response, and Protein folding chaperone
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:452_Stress_response,_and_Protein_folding_chaperone


id: CL:455
description: Protein folding chaperone, and Chaperone binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:455_Protein_folding_chaperone,_and_Chaperone_binding


id: CL:470
description: Clp ATPase, C-terminal, and ATP-dependent peptidase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:470_Clp_ATPase,_C-terminal,_and_ATP-dependent_peptidase_activity


id: CL:482
description: Adaptive Immune System, and Peptidase S1C
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:482_Adaptive_Immune_System,_and_Peptidase_S1C


id: CL:492
description: Response to oxidative stress, and Thioredoxin-like domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:492_Response_to_oxidative_stress,_and_Thioredoxin-like_domain


id: CL:510
description: Mixed, incl. Liposaccharide metabolic process, and Manganese ion binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:510_Mixed,_incl._Liposaccharide_metabolic_process,_and_Manganese_ion_binding


id: CL:512
description: Mixed, incl. Lipid A biosynthesis, and Terpenoid backbone biosynthesis
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:512_Mixed,_incl._Lipid_A_biosynthesis,_and_Terpenoid_backbone_biosynthesis


id: CL:513
description: Lipid A biosynthesis, and 50S ribosomal protein L30e-like
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:513_Lipid_A_biosynthesis,_and_50S_ribosomal_protein_L30e-like


id: CL:526
description: Mixed, incl. PDZ domain 6, and De novo CTP biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:526_Mixed,_incl._PDZ_domain_6,_and_De_novo_CTP_biosynthetic_process


id: CL:543
description: Lipopolysaccharide biosynthesis, and Haloacid dehalogenase-like hydrolase
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:543_Lipopolysaccharide_biosynthesis,_and_Haloacid_dehalogenase-like_hydrolase


id: CL:56
description: Gene expression, and Protein transport
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:56_Gene_expression,_and_Protein_transport


id: CL:561
description: Mixed, incl. RF-1 domain, and Nucleoside salvage
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:561_Mixed,_incl._RF-1_domain,_and_Nucleoside_salvage


id: CL:57
description: Mixed, incl. Translation, and RNA metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:57_Mixed,_incl._Translation,_and_RNA_metabolic_process


id: CL:572
description: Mixed, incl. DNA replication, and DNA repair
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:572_Mixed,_incl._DNA_replication,_and_DNA_repair


id: CL:573
description: Mixed, incl. DNA replication, and DNA repair
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:573_Mixed,_incl._DNA_replication,_and_DNA_repair


id: CL:575
description: DNA replication, and DNA repair complex
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:575_DNA_replication,_and_DNA_repair_complex


id: CL:577
description: DNA polymerase activity, and Nucleotide excision repair
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:577_DNA_polymerase_activity,_and_Nucleotide_excision_repair


id: CL:579
description: DNA polymerase activity, and Single-stranded DNA binding
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:579_DNA_polymerase_activity,_and_Single-stranded_DNA_binding


id: CL:58
description: Translation, and RNA metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:58_Translation,_and_RNA_metabolic_process


id: CL:581
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:581_DNA/RNA_polymerase_superfamily,_and_DNA_recombination_and_repair_protein_RecA-like,_ATP-binding_domain

description:
  DNA/RNA polymerase superfamily, and DNA recombination and repair protein RecA-like, ATP-binding domain


id: CL:594
description: DNA polymerase complex, and PHP domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:594_DNA_polymerase_complex,_and_PHP_domain


id: CL:612
description: DNA excision, and DNA helicase, UvrD/REP type
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:612_DNA_excision,_and_DNA_helicase,_UvrD/REP_type


id: CL:645
description: Mixed, incl. ParB/RepB/Spo0J partition protein, and Chromosome partition
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:645_Mixed,_incl._ParB/RepB/Spo0J_partition_protein,_and_Chromosome_partition


id: CL:648
description: Mixed, incl. Anion-transporting ATPase, and Regulation of sporulation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:648_Mixed,_incl._Anion-transporting_ATPase,_and_Regulation_of_sporulation


id: CL:669
description: Mixed, incl. rRNA catabolic process, and RelA/SpoT
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:669_Mixed,_incl._rRNA_catabolic_process,_and_RelA/SpoT


id: CL:671
description: Mixed, incl. RelA/SpoT, and rRNA catabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:671_Mixed,_incl._RelA/SpoT,_and_rRNA_catabolic_process


id: CL:69
description: Ribosome, and Translational elongation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:69_Ribosome,_and_Translational_elongation


id: CL:701
description: Mixed, incl. Protein repair, and Dioxin degradation
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:701_Mixed,_incl._Protein_repair,_and_Dioxin_degradation


id: CL:719
description: Mixed, incl. Ribosome assembly, and Cytochrome c-like domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:719_Mixed,_incl._Ribosome_assembly,_and_Cytochrome_c-like_domain


id: CL:72
description: Structural constituent of ribosome
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:72_Structural_constituent_of_ribosome


id: CL:721
description: Mixed, incl. Maf-like protein, and Ribonuclease E/G
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:721_Mixed,_incl._Maf-like_protein,_and_Ribonuclease_E/G


id: CL:742
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:742_Mixed,_incl._Ribonucleoside-diphosphate_reductase_activity,_and_Pyrimidine_nucleoside_triphosphate_metabolic_process

description:
  Mixed, incl. Ribonucleoside-diphosphate reductase activity, and Pyrimidine nucleoside triphosphate metabolic process


id: CL:743
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:743_Mixed,_incl._Ribonucleoside-diphosphate_reductase_activity,_and_Pyrimidine_nucleoside_triphosphate_metabolic_process

description:
  Mixed, incl. Ribonucleoside-diphosphate reductase activity, and Pyrimidine nucleoside triphosphate metabolic process


id: CL:746
description: Ribonucleoside-diphosphate reductase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:746_Ribonucleoside-diphosphate_reductase_activity


id: CL:76
description: Structural constituent of ribosome
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:76_Structural_constituent_of_ribosome


id: CL:770
description: Mixed, incl. NADH oxidation, and Xylose isomerase-like superfamily
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:770_Mixed,_incl._NADH_oxidation,_and_Xylose_isomerase-like_superfamily


id: CL:785
description: Mixed, incl. glycyl-tRNA aminoacylation, and AAA domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:785_Mixed,_incl._glycyl-tRNA_aminoacylation,_and_AAA_domain


id: CL:788
description: Mixed, incl. AAA domain, and TRAM domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:788_Mixed,_incl._AAA_domain,_and_TRAM_domain


id: CL:805
description: Organic acid biosynthetic process, and Nucleoside monophosphate biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:805_Organic_acid_biosynthetic_process,_and_Nucleoside_monophosphate_biosynthetic_process


id: CL:806
description: Cellular amino acid biosynthetic process, and Nucleoside monophosphate biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:806_Cellular_amino_acid_biosynthetic_process,_and_Nucleoside_monophosphate_biosynthetic_process


id: CL:807
description: Cellular amino acid biosynthetic process, and Nucleoside monophosphate biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:807_Cellular_amino_acid_biosynthetic_process,_and_Nucleoside_monophosphate_biosynthetic_process


id: CL:808
description: Alpha-amino acid metabolic process, and Nucleoside monophosphate biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:808_Alpha-amino_acid_metabolic_process,_and_Nucleoside_monophosphate_biosynthetic_process


id: CL:809
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:809_Mixed,_incl._Nucleoside_monophosphate_biosynthetic_process,_and_Glutamine_family_amino_acid_biosynthetic_process

description:
  Mixed, incl. Nucleoside monophosphate biosynthetic process, and Glutamine family amino acid biosynthetic process


id: CL:81
description: Structural constituent of ribosome
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:81_Structural_constituent_of_ribosome


id: CL:810
description: Glutamine family amino acid biosynthetic process, and Aspartate family amino acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:810_Glutamine_family_amino_acid_biosynthetic_process,_and_Aspartate_family_amino_acid_metabolic_process


id: CL:811
description: Glutamine family amino acid biosynthetic process, and Aspartate family amino acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:811_Glutamine_family_amino_acid_biosynthetic_process,_and_Aspartate_family_amino_acid_metabolic_process


id: CL:812
description: Arginine metabolic process, and Aspartate family amino acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:812_Arginine_metabolic_process,_and_Aspartate_family_amino_acid_metabolic_process


id: CL:83
description: Structural constituent of ribosome
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:83_Structural_constituent_of_ribosome


id: CL:830
description: Aspartate family amino acid metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:830_Aspartate_family_amino_acid_metabolic_process


id: CL:846
description: Carbapenem biosynthesis, and Glutamate synthase domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:846_Carbapenem_biosynthesis,_and_Glutamate_synthase_domain


id: CL:85
description: Large ribosomal subunit, and Ribosome
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:85_Large_ribosomal_subunit,_and_Ribosome


id: CL:861
description: Diaminopimelate biosynthesis, and Methyltransferase HemK-like
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:861_Diaminopimelate_biosynthesis,_and_Methyltransferase_HemK-like


id: CL:871
description: Ribonucleoside monophosphate biosynthetic process, and Tetrahydrofolate metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:871_Ribonucleoside_monophosphate_biosynthetic_process,_and_Tetrahydrofolate_metabolic_process


id: CL:872
description: Purine biosynthesis, and One-carbon metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:872_Purine_biosynthesis,_and_One-carbon_metabolism


id: CL:900
description: One-carbon metabolism, and dTTP metabolic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:900_One-carbon_metabolism,_and_dTTP_metabolic_process


id: CL:910
description: UMP biosynthetic process, and Dihydroorotase activity
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:910_UMP_biosynthetic_process,_and_Dihydroorotase_activity


id: CL:927
description: Cysteine and methionine metabolism, and Microbody
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:927_Cysteine_and_methionine_metabolism,_and_Microbody


id: CL:929
description: Methionine biosynthesis, and One-carbon metabolism
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:929_Methionine_biosynthesis,_and_One-carbon_metabolism


id: CL:945
description: Aminotransferase class-V, and D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:945_Aminotransferase_class-V,_and_D-isomer_specific_2-hydroxyacid_dehydrogenase,_catalytic_domain


id: CL:961
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:961_Phenylalanine,_tyrosine_and_tryptophan_biosynthesis,_and_Branched-chain_amino_acid_metabolic_process

description:
  Phenylalanine, tyrosine and tryptophan biosynthesis, and Branched-chain amino acid metabolic process


id: CL:962
description: Branched-chain amino acid metabolic process, and HMGL-like
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:962_Branched-chain_amino_acid_metabolic_process,_and_HMGL-like


id: CL:965
description: Valine metabolic process, and HMGL-like
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:965_Valine_metabolic_process,_and_HMGL-like


id: CL:984
description: Leucine biosynthesis, and tRNA pseudouridine synthesis
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:984_Leucine_biosynthesis,_and_tRNA_pseudouridine_synthesis


id: CL:997
description: Aromatic amino acid family biosynthetic process
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:997_Aromatic_amino_acid_family_biosynthetic_process


id: CL:999
name:
  Local Network Cluster (STRING).STRING_v12.0_1356299_STRINGid_CL:999_Aromatic_amino_acid_family_biosynthetic_process,_prephenate_pathway,_and_Chorismate_biosynthetic_process

description:
  Aromatic amino acid family biosynthetic process, prephenate pathway, and Chorismate biosynthetic process


id: GO:0000122
description: Negative regulation of transcription by RNA polymerase II
memo: https://amigo.geneontology.org/amigo/term/GO:0000122
golevel: 12
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0000122_Negative_regulation_of_transcription_by_RNA_polymerase_II


id: GO:0000462
description: Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
memo: https://amigo.geneontology.org/amigo/term/GO:0000462
golevel: 11
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0000462_Maturation_of_SSU-rRNA_from_tricistronic_rRNA_transcript_(SSU-rRNA,_5.8S_rRNA,_LSU-rRNA)


id: GO:0000701
description: Purine-specific mismatch base pair DNA N-glycosylase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0000701
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0000701_Purine-specific_mismatch_base_pair_DNA_N-glycosylase_activity


id: GO:0000716
description: Transcription-coupled nucleotide-excision repair, DNA damage recognition
memo: https://amigo.geneontology.org/amigo/term/GO:0000716
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0000716_Transcription-coupled_nucleotide-excision_repair,_DNA_damage_recognition


id: GO:0000724
description: Double-strand break repair via homologous recombination
memo: https://amigo.geneontology.org/amigo/term/GO:0000724
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0000724_Double-strand_break_repair_via_homologous_recombination


id: GO:0000820
description: Regulation of glutamine family amino acid metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0000820
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0000820_Regulation_of_glutamine_family_amino_acid_metabolic_process


id: GO:0001073
description: Transcription antitermination factor activity, DNA binding
memo: https://amigo.geneontology.org/amigo/term/GO:0001073
golevel: 2
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0001073_Transcription_antitermination_factor_activity,_DNA_binding


id: GO:0003848
description: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0003848
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003848_2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_diphosphokinase_activity


id: GO:0003864
description: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0003864
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003864_3-methyl-2-oxobutanoate_hydroxymethyltransferase_activity


id: GO:0003871
description: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0003871
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003871_5-methyltetrahydropteroyltriglutamate-homocysteine_S-methyltransferase_activity


id: GO:0003882
description: CDP-diacylglycerol-serine O-phosphatidyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0003882
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003882_CDP-diacylglycerol-serine_O-phosphatidyltransferase_activity


id: GO:0003906
description: DNA-(apurinic or apyrimidinic site) endonuclease activity
memo: https://amigo.geneontology.org/amigo/term/GO:0003906
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003906_DNA-(apurinic_or_apyrimidinic_site)_endonuclease_activity


id: GO:0003908
description: methylated-DNA-[protein]-cysteine S-methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0003908
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003908_methylated-DNA-[protein]-cysteine_S-methyltransferase_activity


id: GO:0003917
description: DNA topoisomerase type I (single strand cut, ATP-independent) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0003917
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003917_DNA_topoisomerase_type_I_(single_strand_cut,_ATP-independent)_activity


id: GO:0003918
description: DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0003918
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003918_DNA_topoisomerase_type_II_(double_strand_cut,_ATP-hydrolyzing)_activity


id: GO:0003949
memo: https://amigo.geneontology.org/amigo/term/GO:0003949
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003949_1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide_isomerase_activity

description:
  1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity


id: GO:0003992
description: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0003992
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0003992_N2-acetyl-L-ornithine:2-oxoglutarate_5-aminotransferase_activity


id: GO:0004015
description: adenosylmethionine-8-amino-7-oxononanoate transaminase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004015
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004015_adenosylmethionine-8-amino-7-oxononanoate_transaminase_activity


id: GO:0004018
description: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004018
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004018_N6-(1,2-dicarboxyethyl)AMP_AMP-lyase_(fumarate-forming)_activity


id: GO:0004088
description: Carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004088
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004088_Carbamoyl-phosphate_synthase_(glutamine-hydrolyzing)_activity


id: GO:0004174
description: Electron-transferring-flavoprotein dehydrogenase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004174
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004174_Electron-transferring-flavoprotein_dehydrogenase_activity


id: GO:0004317
description: 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004317
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004317_3-hydroxypalmitoyl-[acyl-carrier-protein]_dehydratase_activity


id: GO:0004318
description: Enoyl-[acyl-carrier-protein] reductase (NADH) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004318
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004318_Enoyl-[acyl-carrier-protein]_reductase_(NADH)_activity


id: GO:0004360
description: glutamine-fructose-6-phosphate transaminase (isomerizing) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004360
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004360_glutamine-fructose-6-phosphate_transaminase_(isomerizing)_activity


id: GO:0004486
description: Methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004486
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004486_Methylenetetrahydrofolate_dehydrogenase_[NAD(P)+]_activity


id: GO:0004488
description: Methylenetetrahydrofolate dehydrogenase (NADP+) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004488
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004488_Methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity


id: GO:0004489
description: Methylenetetrahydrofolate reductase (NAD(P)H) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004489
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004489_Methylenetetrahydrofolate_reductase_(NAD(P)H)_activity


id: GO:0004514
description: Nicotinate-nucleotide diphosphorylase (carboxylating) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004514
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004514_Nicotinate-nucleotide_diphosphorylase_(carboxylating)_activity


id: GO:0004591
description: Oxoglutarate dehydrogenase (succinyl-transferring) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004591
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004591_Oxoglutarate_dehydrogenase_(succinyl-transferring)_activity


id: GO:0004604
description: Phosphoadenylyl-sulfate reductase (thioredoxin) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004604
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004604_Phosphoadenylyl-sulfate_reductase_(thioredoxin)_activity


id: GO:0004639
description: Phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004639
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004639_Phosphoribosylaminoimidazolesuccinocarboxamide_synthase_activity


id: GO:0004641
description: Phosphoribosylformylglycinamidine cyclo-ligase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004641
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004641_Phosphoribosylformylglycinamidine_cyclo-ligase_activity


id: GO:0004643
description: Phosphoribosylaminoimidazolecarboxamide formyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004643
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004643_Phosphoribosylaminoimidazolecarboxamide_formyltransferase_activity


id: GO:0004648
description: O-phospho-L-serine:2-oxoglutarate aminotransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004648
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004648_O-phospho-L-serine:2-oxoglutarate_aminotransferase_activity


id: GO:0004719
description: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004719
golevel: 8
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004719_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity


id: GO:0004748
description: Ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0004748
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004748_Ribonucleoside-diphosphate_reductase_activity,_thioredoxin_disulfide_as_acceptor


id: GO:0004808
description: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0004808
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0004808_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_activity


id: GO:0005315
description: Inorganic phosphate transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0005315
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0005315_Inorganic_phosphate_transmembrane_transporter_activity


id: GO:0006515
description: Protein quality control for misfolded or incompletely synthesized proteins
memo: https://amigo.geneontology.org/amigo/term/GO:0006515
golevel: 7
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0006515_Protein_quality_control_for_misfolded_or_incompletely_synthesized_proteins


id: GO:0006614
description: SRP-dependent cotranslational protein targeting to membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0006614
golevel: 11
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0006614_SRP-dependent_cotranslational_protein_targeting_to_membrane


id: GO:0008028
description: Monocarboxylic acid transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008028
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008028_Monocarboxylic_acid_transmembrane_transporter_activity


id: GO:0008124
description: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008124
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008124_4-alpha-hydroxytetrahydrobiopterin_dehydratase_activity


id: GO:0008271
description: Secondary active sulfate transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008271
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008271_Secondary_active_sulfate_transmembrane_transporter_activity


id: GO:0008425
description: 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008425
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008425_2-polyprenyl-6-methoxy-1,4-benzoquinone_methyltransferase_activity


id: GO:0008444
description: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008444
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008444_CDP-diacylglycerol-glycerol-3-phosphate_3-phosphatidyltransferase_activity


id: GO:0008534
description: Oxidized purine nucleobase lesion DNA N-glycosylase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008534
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008534_Oxidized_purine_nucleobase_lesion_DNA_N-glycosylase_activity


id: GO:0008657
description: DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008657
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008657_DNA_topoisomerase_type_II_(double_strand_cut,_ATP-hydrolyzing)_inhibitor_activity


id: GO:0008659
description: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008659
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008659_(3R)-hydroxymyristoyl-[acyl-carrier-protein]_dehydratase_activity


id: GO:0008666
description: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008666
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008666_2,3,4,5-tetrahydropyridine-2,6-dicarboxylate_N-succinyltransferase_activity


id: GO:0008685
description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008685
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008685_2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase_activity


id: GO:0008686
description: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008686
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008686_3,4-dihydroxy-2-butanone-4-phosphate_synthase_activity


id: GO:0008690
description: 3-deoxy-manno-octulosonate cytidylyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008690
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008690_3-deoxy-manno-octulosonate_cytidylyltransferase_activity


id: GO:0008693
description: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008693
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008693_3-hydroxydecanoyl-[acyl-carrier-protein]_dehydratase_activity


id: GO:0008703
description: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008703
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008703_5-amino-6-(5-phosphoribosylamino)uracil_reductase_activity


id: GO:0008757
description: S-adenosylmethionine-dependent methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008757
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008757_S-adenosylmethionine-dependent_methyltransferase_activity


id: GO:0008759
description: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008759
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008759_UDP-3-O-[3-hydroxymyristoyl]_N-acetylglucosamine_deacetylase_activity


id: GO:0008760
description: UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008760
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008760_UDP-N-acetylglucosamine_1-carboxyvinyltransferase_activity


id: GO:0008764
description: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008764
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008764_UDP-N-acetylmuramoylalanine-D-glutamate_ligase_activity


id: GO:0008765
description: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008765
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008765_UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate_ligase_activity


id: GO:0008766
description: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008766
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008766_UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine_ligase_activity


id: GO:0008780
description: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008780
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008780_acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine_O-acyltransferase_activity


id: GO:0008803
description: bis(5-nucleosyl)-tetraphosphatase (symmetrical) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008803
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008803_bis(5-nucleosyl)-tetraphosphatase_(symmetrical)_activity


id: GO:0008817
description: cob(I)yrinic acid a,c-diamide adenosyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008817
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008817_cob(I)yrinic_acid_a,c-diamide_adenosyltransferase_activity


id: GO:0008825
description: Cyclopropane-fatty-acyl-phospholipid synthase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008825
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008825_Cyclopropane-fatty-acyl-phospholipid_synthase_activity


id: GO:0008835
description: Diaminohydroxyphosphoribosylaminopyrimidine deaminase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008835
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008835_Diaminohydroxyphosphoribosylaminopyrimidine_deaminase_activity


id: GO:0008882
description: [Glutamate-ammonia-ligase] adenylyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008882
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008882_[Glutamate-ammonia-ligase]_adenylyltransferase_activity


id: GO:0008961
description: Phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008961
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008961_Phosphatidylglycerol-prolipoprotein_diacylglyceryl_transferase_activity


id: GO:0008963
description: phospho-N-acetylmuramoyl-pentapeptide-transferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008963
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008963_phospho-N-acetylmuramoyl-pentapeptide-transferase_activity


id: GO:0008965
description: Phosphoenolpyruvate-protein phosphotransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008965
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008965_Phosphoenolpyruvate-protein_phosphotransferase_activity


id: GO:0008982
description: protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0008982
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0008982_protein-N(PI)-phosphohistidine-sugar_phosphotransferase_activity


id: GO:0009007
description: Site-specific DNA-methyltransferase (adenine-specific) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0009007
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0009007_Site-specific_DNA-methyltransferase_(adenine-specific)_activity


id: GO:0009095
description: Aromatic amino acid family biosynthetic process, prephenate pathway
memo: https://amigo.geneontology.org/amigo/term/GO:0009095
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009095_Aromatic_amino_acid_family_biosynthetic_process,_prephenate_pathway


id: GO:0009130
description: Pyrimidine nucleoside monophosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009130
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009130_Pyrimidine_nucleoside_monophosphate_biosynthetic_process


id: GO:0009139
description: Pyrimidine nucleoside diphosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009139
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009139_Pyrimidine_nucleoside_diphosphate_biosynthetic_process


id: GO:0009148
description: Pyrimidine nucleoside triphosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009148
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009148_Pyrimidine_nucleoside_triphosphate_biosynthetic_process


id: GO:0009157
description: Deoxyribonucleoside monophosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009157
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009157_Deoxyribonucleoside_monophosphate_biosynthetic_process


id: GO:0009168
description: Purine ribonucleoside monophosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009168
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009168_Purine_ribonucleoside_monophosphate_biosynthetic_process


id: GO:0009173
description: Pyrimidine ribonucleoside monophosphate metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009173
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009173_Pyrimidine_ribonucleoside_monophosphate_metabolic_process


id: GO:0009174
description: Pyrimidine ribonucleoside monophosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009174
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009174_Pyrimidine_ribonucleoside_monophosphate_biosynthetic_process


id: GO:0009175
description: Pyrimidine ribonucleoside monophosphate catabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009175
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009175_Pyrimidine_ribonucleoside_monophosphate_catabolic_process


id: GO:0009176
description: Pyrimidine deoxyribonucleoside monophosphate metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009176
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009176_Pyrimidine_deoxyribonucleoside_monophosphate_metabolic_process


id: GO:0009177
description: Pyrimidine deoxyribonucleoside monophosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009177
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009177_Pyrimidine_deoxyribonucleoside_monophosphate_biosynthetic_process


id: GO:0009196
description: Pyrimidine deoxyribonucleoside diphosphate metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009196
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009196_Pyrimidine_deoxyribonucleoside_diphosphate_metabolic_process


id: GO:0009197
description: Pyrimidine deoxyribonucleoside diphosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009197
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009197_Pyrimidine_deoxyribonucleoside_diphosphate_biosynthetic_process


id: GO:0009206
description: Purine ribonucleoside triphosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009206
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009206_Purine_ribonucleoside_triphosphate_biosynthetic_process


id: GO:0009208
description: Pyrimidine ribonucleoside triphosphate metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009208
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009208_Pyrimidine_ribonucleoside_triphosphate_metabolic_process


id: GO:0009209
description: Pyrimidine ribonucleoside triphosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009209
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009209_Pyrimidine_ribonucleoside_triphosphate_biosynthetic_process


id: GO:0009211
description: Pyrimidine deoxyribonucleoside triphosphate metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009211
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009211_Pyrimidine_deoxyribonucleoside_triphosphate_metabolic_process


id: GO:0009212
description: Pyrimidine deoxyribonucleoside triphosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009212
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009212_Pyrimidine_deoxyribonucleoside_triphosphate_biosynthetic_process


id: GO:0009213
description: Pyrimidine deoxyribonucleoside triphosphate catabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0009213
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009213_Pyrimidine_deoxyribonucleoside_triphosphate_catabolic_process


id: GO:0009330
description: DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009330
golevel: 3
name:
  GOCC.STRING_v12.0_1356299_STRINGid_GO:0009330_DNA_topoisomerase_type_II_(double_strand_cut,_ATP-hydrolyzing)_complex


id: GO:0009401
description: Phosphoenolpyruvate-dependent sugar phosphotransferase system
memo: https://amigo.geneontology.org/amigo/term/GO:0009401
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0009401_Phosphoenolpyruvate-dependent_sugar_phosphotransferase_system


id: GO:0009678
description: Pyrophosphate hydrolysis-driven proton transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0009678
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0009678_Pyrophosphate_hydrolysis-driven_proton_transmembrane_transporter_activity


id: GO:0010557
description: Positive regulation of macromolecule biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0010557
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0010557_Positive_regulation_of_macromolecule_biosynthetic_process


id: GO:0010558
description: Negative regulation of macromolecule biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0010558
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0010558_Negative_regulation_of_macromolecule_biosynthetic_process


id: GO:0010604
description: Positive regulation of macromolecule metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0010604
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0010604_Positive_regulation_of_macromolecule_metabolic_process


id: GO:0010605
description: Negative regulation of macromolecule metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0010605
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0010605_Negative_regulation_of_macromolecule_metabolic_process


id: GO:0015318
description: Inorganic molecular entity transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0015318
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0015318_Inorganic_molecular_entity_transmembrane_transporter_activity


id: GO:0015415
description: ATPase-coupled phosphate ion transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0015415
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0015415_ATPase-coupled_phosphate_ion_transmembrane_transporter_activity


id: GO:0015453
description: Oxidoreduction-driven active transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0015453
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0015453_Oxidoreduction-driven_active_transmembrane_transporter_activity


id: GO:0015658
description: Branched-chain amino acid transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0015658
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0015658_Branched-chain_amino_acid_transmembrane_transporter_activity


id: GO:0015988
description: Energy coupled proton transmembrane transport, against electrochemical gradient
memo: https://amigo.geneontology.org/amigo/term/GO:0015988
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0015988_Energy_coupled_proton_transmembrane_transport,_against_electrochemical_gradient


id: GO:0016614
description: Oxidoreductase activity, acting on CH-OH group of donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016614
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016614_Oxidoreductase_activity,_acting_on_CH-OH_group_of_donors


id: GO:0016616
description: Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016616
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016616_Oxidoreductase_activity,_acting_on_the_CH-OH_group_of_donors,_NAD_or_NADP_as_acceptor


id: GO:0016620
description: Oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016620
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016620_Oxidoreductase_activity,_acting_on_the_aldehyde_or_oxo_group_of_donors,_NAD_or_NADP_as_acceptor


id: GO:0016624
description: Oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016624
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016624_Oxidoreductase_activity,_acting_on_the_aldehyde_or_oxo_group_of_donors,_disulfide_as_acceptor


id: GO:0016627
description: Oxidoreductase activity, acting on the CH-CH group of donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016627
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016627_Oxidoreductase_activity,_acting_on_the_CH-CH_group_of_donors


id: GO:0016628
description: Oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016628
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016628_Oxidoreductase_activity,_acting_on_the_CH-CH_group_of_donors,_NAD_or_NADP_as_acceptor


id: GO:0016634
description: Oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016634
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016634_Oxidoreductase_activity,_acting_on_the_CH-CH_group_of_donors,_oxygen_as_acceptor


id: GO:0016635
memo: https://amigo.geneontology.org/amigo/term/GO:0016635
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016635_Oxidoreductase_activity,_acting_on_the_CH-CH_group_of_donors,_quinone_or_related_compound_as_acceptor

description:
  Oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor


id: GO:0016638
description: Oxidoreductase activity, acting on the CH-NH2 group of donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016638
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016638_Oxidoreductase_activity,_acting_on_the_CH-NH2_group_of_donors


id: GO:0016641
description: Oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016641
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016641_Oxidoreductase_activity,_acting_on_the_CH-NH2_group_of_donors,_oxygen_as_acceptor


id: GO:0016645
description: Oxidoreductase activity, acting on the CH-NH group of donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016645
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016645_Oxidoreductase_activity,_acting_on_the_CH-NH_group_of_donors


id: GO:0016646
description: Oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016646
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016646_Oxidoreductase_activity,_acting_on_the_CH-NH_group_of_donors,_NAD_or_NADP_as_acceptor


id: GO:0016649
memo: https://amigo.geneontology.org/amigo/term/GO:0016649
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016649_Oxidoreductase_activity,_acting_on_the_CH-NH_group_of_donors,_quinone_or_similar_compound_as_acceptor

description:
  Oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor


id: GO:0016652
description: Oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016652
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016652_Oxidoreductase_activity,_acting_on_NAD(P)H,_NAD(P)_as_acceptor


id: GO:0016655
description: Oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016655
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016655_Oxidoreductase_activity,_acting_on_NAD(P)H,_quinone_or_similar_compound_as_acceptor


id: GO:0016657
description: Oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016657
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016657_Oxidoreductase_activity,_acting_on_NAD(P)H,_nitrogenous_group_as_acceptor


id: GO:0016661
description: Oxidoreductase activity, acting on other nitrogenous compounds as donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016661
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016661_Oxidoreductase_activity,_acting_on_other_nitrogenous_compounds_as_donors


id: GO:0016667
description: Oxidoreductase activity, acting on a sulfur group of donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016667
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016667_Oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors


id: GO:0016668
description: Oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016668
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016668_Oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_NAD(P)_as_acceptor


id: GO:0016669
description: Oxidoreductase activity, acting on a sulfur group of donors, cytochrome as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016669
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016669_Oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_cytochrome_as_acceptor


id: GO:0016671
description: Oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016671
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016671_Oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_disulfide_as_acceptor


id: GO:0016672
memo: https://amigo.geneontology.org/amigo/term/GO:0016672
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016672_Oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_quinone_or_similar_compound_as_acceptor

description:
  Oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor


id: GO:0016675
description: Oxidoreductase activity, acting on a heme group of donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016675
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016675_Oxidoreductase_activity,_acting_on_a_heme_group_of_donors


id: GO:0016679
description: Oxidoreductase activity, acting on diphenols and related substances as donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016679
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016679_Oxidoreductase_activity,_acting_on_diphenols_and_related_substances_as_donors


id: GO:0016682
description: Oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016682
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016682_Oxidoreductase_activity,_acting_on_diphenols_and_related_substances_as_donors,_oxygen_as_acceptor


id: GO:0016684
description: Oxidoreductase activity, acting on peroxide as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016684
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016684_Oxidoreductase_activity,_acting_on_peroxide_as_acceptor


id: GO:0016701
description: Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen
memo: https://amigo.geneontology.org/amigo/term/GO:0016701
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016701_Oxidoreductase_activity,_acting_on_single_donors_with_incorporation_of_molecular_oxygen


id: GO:0016702
memo: https://amigo.geneontology.org/amigo/term/GO:0016702
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016702_Oxidoreductase_activity,_acting_on_single_donors_with_incorporation_of_molecular_oxygen,_incorporation_of_two_atoms_of_oxygen

description:
  Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


id: GO:0016703
memo: https://amigo.geneontology.org/amigo/term/GO:0016703
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016703_Oxidoreductase_activity,_acting_on_single_donors_with_incorporation_of_molecular_oxygen,_incorporation_of_one_atom_of_oxygen_(internal_monooxygenases_or_internal_mixed_function_oxidases)

description:
  Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)


id: GO:0016705
memo: https://amigo.geneontology.org/amigo/term/GO:0016705
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016705_Oxidoreductase_activity,_acting_on_paired_donors,_with_incorporation_or_reduction_of_molecular_oxygen

description:
  Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen


id: GO:0016713
memo: https://amigo.geneontology.org/amigo/term/GO:0016713
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016713_Oxidoreductase_activity,_acting_on_paired_donors,_with_incorporation_or_reduction_of_molecular_oxygen,_reduced_iron-sulfur_protein_as_one_donor,_and_incorporation_of_one_atom_of_oxygen

description:
  Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen


id: GO:0016716
memo: https://amigo.geneontology.org/amigo/term/GO:0016716
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016716_Oxidoreductase_activity,_acting_on_paired_donors,_with_incorporation_or_reduction_of_molecular_oxygen,_another_compound_as_one_donor,_and_incorporation_of_one_atom_of_oxygen

description:
  Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen


id: GO:0016717
memo: https://amigo.geneontology.org/amigo/term/GO:0016717
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016717_Oxidoreductase_activity,_acting_on_paired_donors,_with_oxidation_of_a_pair_of_donors_resulting_in_the_reduction_of_molecular_oxygen_to_two_molecules_of_water

description:
  Oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water


id: GO:0016721
description: Oxidoreductase activity, acting on superoxide radicals as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016721
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016721_Oxidoreductase_activity,_acting_on_superoxide_radicals_as_acceptor


id: GO:0016726
description: Oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016726
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016726_Oxidoreductase_activity,_acting_on_CH_or_CH2_groups,_NAD_or_NADP_as_acceptor


id: GO:0016728
description: Oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016728
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016728_Oxidoreductase_activity,_acting_on_CH_or_CH2_groups,_disulfide_as_acceptor


id: GO:0016730
description: Oxidoreductase activity, acting on iron-sulfur proteins as donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016730
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016730_Oxidoreductase_activity,_acting_on_iron-sulfur_proteins_as_donors


id: GO:0016731
description: Oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016731
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016731_Oxidoreductase_activity,_acting_on_iron-sulfur_proteins_as_donors,_NAD_or_NADP_as_acceptor


id: GO:0016742
description: Hydroxymethyl-, formyl- and related transferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0016742
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016742_Hydroxymethyl-,_formyl-_and_related_transferase_activity


id: GO:0016747
description: Acyltransferase activity, transferring groups other than amino-acyl groups
memo: https://amigo.geneontology.org/amigo/term/GO:0016747
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016747_Acyltransferase_activity,_transferring_groups_other_than_amino-acyl_groups


id: GO:0016765
description: Transferase activity, transferring alkyl or aryl (other than methyl) groups
memo: https://amigo.geneontology.org/amigo/term/GO:0016765
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016765_Transferase_activity,_transferring_alkyl_or_aryl_(other_than_methyl)_groups


id: GO:0016772
description: Transferase activity, transferring phosphorus-containing groups
memo: https://amigo.geneontology.org/amigo/term/GO:0016772
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016772_Transferase_activity,_transferring_phosphorus-containing_groups


id: GO:0016773
description: Phosphotransferase activity, alcohol group as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016773
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016773_Phosphotransferase_activity,_alcohol_group_as_acceptor


id: GO:0016774
description: Phosphotransferase activity, carboxyl group as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016774
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016774_Phosphotransferase_activity,_carboxyl_group_as_acceptor


id: GO:0016775
description: Phosphotransferase activity, nitrogenous group as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016775
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016775_Phosphotransferase_activity,_nitrogenous_group_as_acceptor


id: GO:0016776
description: Phosphotransferase activity, phosphate group as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0016776
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016776_Phosphotransferase_activity,_phosphate_group_as_acceptor


id: GO:0016780
description: Phosphotransferase activity, for other substituted phosphate groups
memo: https://amigo.geneontology.org/amigo/term/GO:0016780
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016780_Phosphotransferase_activity,_for_other_substituted_phosphate_groups


id: GO:0016782
description: Transferase activity, transferring sulphur-containing groups
memo: https://amigo.geneontology.org/amigo/term/GO:0016782
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016782_Transferase_activity,_transferring_sulphur-containing_groups


id: GO:0016796
memo: https://amigo.geneontology.org/amigo/term/GO:0016796
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016796_Exonuclease_activity,_active_with_either_ribo-_or_deoxyribonucleic_acids_and_producing_5-phosphomonoesters

description:
  Exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5-phosphomonoesters


id: GO:0016810
description: Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
memo: https://amigo.geneontology.org/amigo/term/GO:0016810
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016810_Hydrolase_activity,_acting_on_carbon-nitrogen_(but_not_peptide)_bonds


id: GO:0016811
description: Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
memo: https://amigo.geneontology.org/amigo/term/GO:0016811
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016811_Hydrolase_activity,_acting_on_carbon-nitrogen_(but_not_peptide)_bonds,_in_linear_amides


id: GO:0016812
description: Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
memo: https://amigo.geneontology.org/amigo/term/GO:0016812
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016812_Hydrolase_activity,_acting_on_carbon-nitrogen_(but_not_peptide)_bonds,_in_cyclic_amides


id: GO:0016813
description: Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
memo: https://amigo.geneontology.org/amigo/term/GO:0016813
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016813_Hydrolase_activity,_acting_on_carbon-nitrogen_(but_not_peptide)_bonds,_in_linear_amidines


id: GO:0016814
description: Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
memo: https://amigo.geneontology.org/amigo/term/GO:0016814
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016814_Hydrolase_activity,_acting_on_carbon-nitrogen_(but_not_peptide)_bonds,_in_cyclic_amidines


id: GO:0016818
description: Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
memo: https://amigo.geneontology.org/amigo/term/GO:0016818
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016818_Hydrolase_activity,_acting_on_acid_anhydrides,_in_phosphorus-containing_anhydrides


id: GO:0016822
description: Hydrolase activity, acting on acid carbon-carbon bonds
memo: https://amigo.geneontology.org/amigo/term/GO:0016822
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016822_Hydrolase_activity,_acting_on_acid_carbon-carbon_bonds


id: GO:0016823
description: Hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances
memo: https://amigo.geneontology.org/amigo/term/GO:0016823
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016823_Hydrolase_activity,_acting_on_acid_carbon-carbon_bonds,_in_ketonic_substances


id: GO:0016825
description: Hydrolase activity, acting on acid phosphorus-nitrogen bonds
memo: https://amigo.geneontology.org/amigo/term/GO:0016825
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016825_Hydrolase_activity,_acting_on_acid_phosphorus-nitrogen_bonds


id: GO:0016837
description: Carbon-oxygen lyase activity, acting on polysaccharides
memo: https://amigo.geneontology.org/amigo/term/GO:0016837
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016837_Carbon-oxygen_lyase_activity,_acting_on_polysaccharides


id: GO:0016855
description: Racemase and epimerase activity, acting on amino acids and derivatives
memo: https://amigo.geneontology.org/amigo/term/GO:0016855
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016855_Racemase_and_epimerase_activity,_acting_on_amino_acids_and_derivatives


id: GO:0016857
description: Racemase and epimerase activity, acting on carbohydrates and derivatives
memo: https://amigo.geneontology.org/amigo/term/GO:0016857
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016857_Racemase_and_epimerase_activity,_acting_on_carbohydrates_and_derivatives


id: GO:0016861
description: Intramolecular oxidoreductase activity, interconverting aldoses and ketoses
memo: https://amigo.geneontology.org/amigo/term/GO:0016861
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016861_Intramolecular_oxidoreductase_activity,_interconverting_aldoses_and_ketoses


id: GO:0016868
description: Intramolecular transferase activity, phosphotransferases
memo: https://amigo.geneontology.org/amigo/term/GO:0016868
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016868_Intramolecular_transferase_activity,_phosphotransferases


id: GO:0016869
description: Intramolecular transferase activity, transferring amino groups
memo: https://amigo.geneontology.org/amigo/term/GO:0016869
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016869_Intramolecular_transferase_activity,_transferring_amino_groups


id: GO:0016884
description: Carbon-nitrogen ligase activity, with glutamine as amido-N-donor
memo: https://amigo.geneontology.org/amigo/term/GO:0016884
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016884_Carbon-nitrogen_ligase_activity,_with_glutamine_as_amido-N-donor


id: GO:0016888
description: Endodeoxyribonuclease activity, producing 5-phosphomonoesters
memo: https://amigo.geneontology.org/amigo/term/GO:0016888
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016888_Endodeoxyribonuclease_activity,_producing_5-phosphomonoesters


id: GO:0016889
description: Endodeoxyribonuclease activity, producing 3-phosphomonoesters
memo: https://amigo.geneontology.org/amigo/term/GO:0016889
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016889_Endodeoxyribonuclease_activity,_producing_3-phosphomonoesters


id: GO:0016891
description: Endoribonuclease activity, producing 5-phosphomonoesters
memo: https://amigo.geneontology.org/amigo/term/GO:0016891
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016891_Endoribonuclease_activity,_producing_5-phosphomonoesters


id: GO:0016893
memo: https://amigo.geneontology.org/amigo/term/GO:0016893
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016893_Endonuclease_activity,_active_with_either_ribo-_or_deoxyribonucleic_acids_and_producing_5-phosphomonoesters

description:
  Endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5-phosphomonoesters


id: GO:0016894
memo: https://amigo.geneontology.org/amigo/term/GO:0016894
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016894_Endonuclease_activity,_active_with_either_ribo-_or_deoxyribonucleic_acids_and_producing_3-phosphomonoesters

description:
  Endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3-phosphomonoesters


id: GO:0016895
description: Exodeoxyribonuclease activity, producing 5-phosphomonoesters
memo: https://amigo.geneontology.org/amigo/term/GO:0016895
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016895_Exodeoxyribonuclease_activity,_producing_5-phosphomonoesters


id: GO:0016896
description: Exoribonuclease activity, producing 5-phosphomonoesters
memo: https://amigo.geneontology.org/amigo/term/GO:0016896
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016896_Exoribonuclease_activity,_producing_5-phosphomonoesters


id: GO:0016903
description: Oxidoreductase activity, acting on the aldehyde or oxo group of donors
memo: https://amigo.geneontology.org/amigo/term/GO:0016903
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0016903_Oxidoreductase_activity,_acting_on_the_aldehyde_or_oxo_group_of_donors


id: GO:0018339
description: peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid
memo: https://amigo.geneontology.org/amigo/term/GO:0018339
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0018339_peptidyl-L-beta-methylthioaspartic_acid_biosynthetic_process_from_peptidyl-aspartic_acid


id: GO:0018771
description: 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0018771
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0018771_2-hydroxy-6-oxonona-2,4-dienedioate_hydrolase_activity


id: GO:0019120
description: Hydrolase activity, acting on acid halide bonds, in C-halide compounds
memo: https://amigo.geneontology.org/amigo/term/GO:0019120
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0019120_Hydrolase_activity,_acting_on_acid_halide_bonds,_in_C-halide_compounds


id: GO:0019171
description: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0019171
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0019171_3-hydroxyacyl-[acyl-carrier-protein]_dehydratase_activity


id: GO:0019177
description: Dihydroneopterin triphosphate pyrophosphohydrolase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0019177
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0019177_Dihydroneopterin_triphosphate_pyrophosphohydrolase_activity


id: GO:0019219
description: Regulation of nucleobase-containing compound metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0019219
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0019219_Regulation_of_nucleobase-containing_compound_metabolic_process


id: GO:0019243
description: Methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
memo: https://amigo.geneontology.org/amigo/term/GO:0019243
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0019243_Methylglyoxal_catabolic_process_to_D-lactate_via_S-lactoyl-glutathione


id: GO:0019288
description: Isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
memo: https://amigo.geneontology.org/amigo/term/GO:0019288
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0019288_Isopentenyl_diphosphate_biosynthetic_process,_methylerythritol_4-phosphate_pathway


id: GO:0019294
description: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0019294
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0019294_keto-3-deoxy-D-manno-octulosonic_acid_biosynthetic_process


id: GO:0019379
memo: https://amigo.geneontology.org/amigo/term/GO:0019379
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0019379_Sulfate_assimilation,_phosphoadenylyl_sulfate_reduction_by_phosphoadenylyl-sulfate_reductase_(thioredoxin)

description:
  Sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)


id: GO:0019829
description: ATPase-coupled cation transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0019829
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0019829_ATPase-coupled_cation_transmembrane_transporter_activity


id: GO:0030174
description: Regulation of DNA-templated DNA replication initiation
memo: https://amigo.geneontology.org/amigo/term/GO:0030174
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0030174_Regulation_of_DNA-templated_DNA_replication_initiation


id: GO:0030604
description: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0030604
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0030604_1-deoxy-D-xylulose-5-phosphate_reductoisomerase_activity


id: GO:0030613
description: Oxidoreductase activity, acting on phosphorus or arsenic in donors
memo: https://amigo.geneontology.org/amigo/term/GO:0030613
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0030613_Oxidoreductase_activity,_acting_on_phosphorus_or_arsenic_in_donors


id: GO:0030614
description: Oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0030614
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0030614_Oxidoreductase_activity,_acting_on_phosphorus_or_arsenic_in_donors,_disulfide_as_acceptor


id: GO:0031234
description: Extrinsic component of cytoplasmic side of plasma membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0031234
golevel: 6
name:
  GOCC.STRING_v12.0_1356299_STRINGid_GO:0031234_Extrinsic_component_of_cytoplasmic_side_of_plasma_membrane


id: GO:0031235
description: Intrinsic component of the cytoplasmic side of the plasma membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0031235
name:
  GOCC.STRING_v12.0_1356299_STRINGid_GO:0031235_Intrinsic_component_of_the_cytoplasmic_side_of_the_plasma_membrane


id: GO:0031246
description: Intrinsic component of periplasmic side of cell outer membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0031246
name:
  GOCC.STRING_v12.0_1356299_STRINGid_GO:0031246_Intrinsic_component_of_periplasmic_side_of_cell_outer_membrane


id: GO:0031554
description: Regulation of DNA-templated transcription, termination
memo: https://amigo.geneontology.org/amigo/term/GO:0031554
golevel: 11
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0031554_Regulation_of_DNA-templated_transcription,_termination


id: GO:0032297
description: Negative regulation of DNA-templated DNA replication initiation
memo: https://amigo.geneontology.org/amigo/term/GO:0032297
golevel: 11
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0032297_Negative_regulation_of_DNA-templated_DNA_replication_initiation


id: GO:0032414
description: Positive regulation of ion transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0032414
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0032414_Positive_regulation_of_ion_transmembrane_transporter_activity


id: GO:0033177
description: Proton-transporting two-sector ATPase complex, proton-transporting domain
memo: https://amigo.geneontology.org/amigo/term/GO:0033177
golevel: 3
name:
  GOCC.STRING_v12.0_1356299_STRINGid_GO:0033177_Proton-transporting_two-sector_ATPase_complex,_proton-transporting_domain


id: GO:0033178
description: Proton-transporting two-sector ATPase complex, catalytic domain
memo: https://amigo.geneontology.org/amigo/term/GO:0033178
golevel: 3
name:
  GOCC.STRING_v12.0_1356299_STRINGid_GO:0033178_Proton-transporting_two-sector_ATPase_complex,_catalytic_domain


id: GO:0033283
description: ATPase-coupled organic acid transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0033283
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0033283_ATPase-coupled_organic_acid_transmembrane_transporter_activity


id: GO:0033284
description: ATPase-coupled carboxylic acid transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0033284
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0033284_ATPase-coupled_carboxylic_acid_transmembrane_transporter_activity


id: GO:0033467
description: CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0033467
golevel: 7
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0033467_CMP-keto-3-deoxy-D-manno-octulosonic_acid_metabolic_process


id: GO:0033468
description: CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0033468
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0033468_CMP-keto-3-deoxy-D-manno-octulosonic_acid_biosynthetic_process


id: GO:0033539
description: Fatty acid beta-oxidation using acyl-CoA dehydrogenase
memo: https://amigo.geneontology.org/amigo/term/GO:0033539
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0033539_Fatty_acid_beta-oxidation_using_acyl-CoA_dehydrogenase


id: GO:0033695
description: Oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0033695
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0033695_Oxidoreductase_activity,_acting_on_CH_or_CH2_groups,_quinone_or_similar_compound_as_acceptor


id: GO:0033818
description: Beta-ketoacyl-acyl-carrier-protein synthase III activity
memo: https://amigo.geneontology.org/amigo/term/GO:0033818
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0033818_Beta-ketoacyl-acyl-carrier-protein_synthase_III_activity


id: GO:0034023
description: 5-(carboxyamino)imidazole ribonucleotide mutase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0034023
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0034023_5-(carboxyamino)imidazole_ribonucleotide_mutase_activity


id: GO:0034028
description: 5-(carboxyamino)imidazole ribonucleotide synthase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0034028
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0034028_5-(carboxyamino)imidazole_ribonucleotide_synthase_activity


id: GO:0034040
description: ATPase-coupled lipid transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0034040
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0034040_ATPase-coupled_lipid_transmembrane_transporter_activity


id: GO:0034249
description: Negative regulation of cellular amide metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0034249
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0034249_Negative_regulation_of_cellular_amide_metabolic_process


id: GO:0034250
description: Positive regulation of cellular amide metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0034250
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0034250_Positive_regulation_of_cellular_amide_metabolic_process


id: GO:0034404
description: Nucleobase-containing small molecule biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0034404
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0034404_Nucleobase-containing_small_molecule_biosynthetic_process


id: GO:0035592
description: Establishment of protein localization to extracellular region
memo: https://amigo.geneontology.org/amigo/term/GO:0035592
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0035592_Establishment_of_protein_localization_to_extracellular_region


id: GO:0035998
description: 7,8-dihydroneopterin 3-triphosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0035998
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0035998_7,8-dihydroneopterin_3-triphosphate_biosynthetic_process


id: GO:0036361
description: Racemase activity, acting on amino acids and derivatives
memo: https://amigo.geneontology.org/amigo/term/GO:0036361
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0036361_Racemase_activity,_acting_on_amino_acids_and_derivatives


id: GO:0042083
description: 5,10-methylenetetrahydrofolate-dependent methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0042083
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0042083_5,10-methylenetetrahydrofolate-dependent_methyltransferase_activity


id: GO:0042084
description: 5-methyltetrahydrofolate-dependent methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0042084
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0042084_5-methyltetrahydrofolate-dependent_methyltransferase_activity


id: GO:0042085
description: 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0042085
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0042085_5-methyltetrahydropteroyltri-L-glutamate-dependent_methyltransferase_activity


id: GO:0042173
description: Regulation of sporulation resulting in formation of a cellular spore
memo: https://amigo.geneontology.org/amigo/term/GO:0042173
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0042173_Regulation_of_sporulation_resulting_in_formation_of_a_cellular_spore


id: GO:0042777
description: Proton motive force-driven plasma membrane ATP synthesis
memo: https://amigo.geneontology.org/amigo/term/GO:0042777
golevel: 13
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0042777_Proton_motive_force-driven_plasma_membrane_ATP_synthesis


id: GO:0043161
description: Proteasome-mediated ubiquitin-dependent protein catabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0043161
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0043161_Proteasome-mediated_ubiquitin-dependent_protein_catabolic_process


id: GO:0043165
description: Gram-negative-bacterium-type cell outer membrane assembly
memo: https://amigo.geneontology.org/amigo/term/GO:0043165
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0043165_Gram-negative-bacterium-type_cell_outer_membrane_assembly


id: GO:0043225
description: ATPase-coupled inorganic anion transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0043225
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0043225_ATPase-coupled_inorganic_anion_transmembrane_transporter_activity


id: GO:0043333
description: 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0043333
golevel: 8
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0043333_2-octaprenyl-6-methoxy-1,4-benzoquinone_methylase_activity


id: GO:0043467
description: Regulation of generation of precursor metabolites and energy
memo: https://amigo.geneontology.org/amigo/term/GO:0043467
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0043467_Regulation_of_generation_of_precursor_metabolites_and_energy


id: GO:0043632
description: Modification-dependent macromolecule catabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0043632
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0043632_Modification-dependent_macromolecule_catabolic_process


id: GO:0043709
description: Cell adhesion involved in single-species biofilm formation
memo: https://amigo.geneontology.org/amigo/term/GO:0043709
golevel: 7
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0043709_Cell_adhesion_involved_in_single-species_biofilm_formation


id: GO:0043772
description: Acyl-phosphate glycerol-3-phosphate acyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0043772
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0043772_Acyl-phosphate_glycerol-3-phosphate_acyltransferase_activity


id: GO:0043811
description: Phosphate:acyl-[acyl carrier protein] acyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0043811
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0043811_Phosphate:acyl-[acyl_carrier_protein]_acyltransferase_activity


id: GO:0044419
description: Biological process involved in interspecies interaction between organisms
memo: https://amigo.geneontology.org/amigo/term/GO:0044419
golevel: 1
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0044419_Biological_process_involved_in_interspecies_interaction_between_organisms


id: GO:0044769
description: ATPase activity, coupled to transmembrane movement of ions, rotational mechanism
memo: https://amigo.geneontology.org/amigo/term/GO:0044769
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0044769_ATPase_activity,_coupled_to_transmembrane_movement_of_ions,_rotational_mechanism


id: GO:0045261
description: Proton-transporting ATP synthase complex, catalytic core F(1)
memo: https://amigo.geneontology.org/amigo/term/GO:0045261
golevel: 6
name:
  GOCC.STRING_v12.0_1356299_STRINGid_GO:0045261_Proton-transporting_ATP_synthase_complex,_catalytic_core_F(1)


id: GO:0045263
description: Proton-transporting ATP synthase complex, coupling factor F(o)
memo: https://amigo.geneontology.org/amigo/term/GO:0045263
golevel: 6
name:
  GOCC.STRING_v12.0_1356299_STRINGid_GO:0045263_Proton-transporting_ATP_synthase_complex,_coupling_factor_F(o)


id: GO:0045881
description: Positive regulation of sporulation resulting in formation of a cellular spore
memo: https://amigo.geneontology.org/amigo/term/GO:0045881
golevel: 7
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0045881_Positive_regulation_of_sporulation_resulting_in_formation_of_a_cellular_spore


id: GO:0045934
description: Negative regulation of nucleobase-containing compound metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0045934
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0045934_Negative_regulation_of_nucleobase-containing_compound_metabolic_process


id: GO:0045935
description: Positive regulation of nucleobase-containing compound metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0045935
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0045935_Positive_regulation_of_nucleobase-containing_compound_metabolic_process


id: GO:0046400
description: keto-3-deoxy-D-manno-octulosonic acid metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0046400
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0046400_keto-3-deoxy-D-manno-octulosonic_acid_metabolic_process


id: GO:0046429
description: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0046429
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0046429_4-hydroxy-3-methylbut-2-en-1-yl_diphosphate_synthase_activity


id: GO:0046537
description: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0046537
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0046537_2,3-bisphosphoglycerate-independent_phosphoglycerate_mutase_activity


id: GO:0046538
description: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0046538
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0046538_2,3-bisphosphoglycerate-dependent_phosphoglycerate_mutase_activity


id: GO:0046857
memo: https://amigo.geneontology.org/amigo/term/GO:0046857
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0046857_Oxidoreductase_activity,_acting_on_other_nitrogenous_compounds_as_donors,_with_NAD_or_NADP_as_acceptor

description:
  Oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor


id: GO:0046912
description: Acyltransferase activity, acyl groups converted into alkyl on transfer
memo: https://amigo.geneontology.org/amigo/term/GO:0046912
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0046912_Acyltransferase_activity,_acyl_groups_converted_into_alkyl_on_transfer


id: GO:0046915
description: Transition metal ion transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:0046915
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0046915_Transition_metal_ion_transmembrane_transporter_activity


id: GO:0046933
description: Proton-transporting ATP synthase activity, rotational mechanism
memo: https://amigo.geneontology.org/amigo/term/GO:0046933
golevel: 8
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0046933_Proton-transporting_ATP_synthase_activity,_rotational_mechanism


id: GO:0046961
description: Proton-transporting ATPase activity, rotational mechanism
memo: https://amigo.geneontology.org/amigo/term/GO:0046961
golevel: 8
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0046961_Proton-transporting_ATPase_activity,_rotational_mechanism


id: GO:0047304
description: 2-aminoethylphosphonate-pyruvate transaminase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0047304
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0047304_2-aminoethylphosphonate-pyruvate_transaminase_activity


id: GO:0047334
description: diphosphate-fructose-6-phosphate 1-phosphotransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0047334
golevel: 7
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0047334_diphosphate-fructose-6-phosphate_1-phosphotransferase_activity


id: GO:0047388
description: [Glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
memo: https://amigo.geneontology.org/amigo/term/GO:0047388
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0047388_[Glutamine_synthetase]-adenylyl-L-tyrosine_phosphorylase


id: GO:0047451
description: 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0047451
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0047451_3-hydroxyoctanoyl-[acyl-carrier-protein]_dehydratase_activity


id: GO:0047480
description: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0047480
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0047480_UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine_ligase_activity


id: GO:0050511
description: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0050511
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0050511_Undecaprenyldiphospho-muramoylpentapeptide_beta-N-acetylglucosaminyltransferase_activity


id: GO:0050515
description: 4-(cytidine 5-diphospho)-2-C-methyl-D-erythritol kinase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0050515
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0050515_4-(cytidine_5-diphospho)-2-C-methyl-D-erythritol_kinase_activity


id: GO:0050518
description: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0050518
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0050518_2-C-methyl-D-erythritol_4-phosphate_cytidylyltransferase_activity


id: GO:0050566
description: asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0050566
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0050566_asparaginyl-tRNA_synthase_(glutamine-hydrolyzing)_activity


id: GO:0050567
description: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
memo: https://amigo.geneontology.org/amigo/term/GO:0050567
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0050567_glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)_activity


id: GO:0050664
description: Oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0050664
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0050664_Oxidoreductase_activity,_acting_on_NAD(P)H,_oxygen_as_acceptor


id: GO:0051003
description: Ligase activity, forming nitrogen-metal bonds, forming coordination complexes
memo: https://amigo.geneontology.org/amigo/term/GO:0051003
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0051003_Ligase_activity,_forming_nitrogen-metal_bonds,_forming_coordination_complexes


id: GO:0051172
description: Negative regulation of nitrogen compound metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0051172
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0051172_Negative_regulation_of_nitrogen_compound_metabolic_process


id: GO:0051173
description: Positive regulation of nitrogen compound metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0051173
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0051173_Positive_regulation_of_nitrogen_compound_metabolic_process


id: GO:0051240
description: Positive regulation of multicellular organismal process
memo: https://amigo.geneontology.org/amigo/term/GO:0051240
golevel: 4
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0051240_Positive_regulation_of_multicellular_organismal_process


id: GO:0051241
description: Negative regulation of multicellular organismal process
memo: https://amigo.geneontology.org/amigo/term/GO:0051241
golevel: 4
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0051241_Negative_regulation_of_multicellular_organismal_process


id: GO:0051703
description: Biological process involved in intraspecies interaction between organisms
memo: https://amigo.geneontology.org/amigo/term/GO:0051703
golevel: 1
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0051703_Biological_process_involved_in_intraspecies_interaction_between_organisms


id: GO:0051712
description: Positive regulation of killing of cells of another organism
memo: https://amigo.geneontology.org/amigo/term/GO:0051712
golevel: 7
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0051712_Positive_regulation_of_killing_of_cells_of_another_organism


id: GO:0051745
description: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0051745
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0051745_4-hydroxy-3-methylbut-2-en-1-yl_diphosphate_reductase_activity


id: GO:0051748
description: UTP-monosaccharide-1-phosphate uridylyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0051748
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0051748_UTP-monosaccharide-1-phosphate_uridylyltransferase_activity


id: GO:0051991
memo: https://amigo.geneontology.org/amigo/term/GO:0051991
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0051991_UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol_4-beta-N-acetylglucosaminlytransferase_activity

description:
  UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity


id: GO:0051992
memo: https://amigo.geneontology.org/amigo/term/GO:0051992
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0051992_UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate_transferase_activity

description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity


id: GO:0052042
description: Positive regulation by symbiont of host programmed cell death
memo: https://amigo.geneontology.org/amigo/term/GO:0052042
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0052042_Positive_regulation_by_symbiont_of_host_programmed_cell_death


id: GO:0052151
description: Positive regulation by symbiont of host apoptotic process
memo: https://amigo.geneontology.org/amigo/term/GO:0052151
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0052151_Positive_regulation_by_symbiont_of_host_apoptotic_process


id: GO:0052592
description: Oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor
memo: https://amigo.geneontology.org/amigo/term/GO:0052592
golevel: 4
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0052592_Oxidoreductase_activity,_acting_on_CH_or_CH2_groups,_with_an_iron-sulfur_protein_as_acceptor


id: GO:0052823
description: 2-hydroxy-6-oxonona-2,4,7-trienedioate hydrolase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0052823
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0052823_2-hydroxy-6-oxonona-2,4,7-trienedioate_hydrolase_activity


id: GO:0052908
description: 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0052908
golevel: 9
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0052908_16S_rRNA_(adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase_activity


id: GO:0052929
description: ATP:3-cytidine-cytidine-tRNA adenylyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0052929
golevel: 6
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0052929_ATP:3-cytidine-cytidine-tRNA_adenylyltransferase_activity


id: GO:0055086
description: Nucleobase-containing small molecule metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0055086
golevel: 3
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0055086_Nucleobase-containing_small_molecule_metabolic_process


id: GO:0061695
description: Transferase complex, transferring phosphorus-containing groups
memo: https://amigo.geneontology.org/amigo/term/GO:0061695
golevel: 4
name:
  GOCC.STRING_v12.0_1356299_STRINGid_GO:0061695_Transferase_complex,_transferring_phosphorus-containing_groups


id: GO:0070626
memo: https://amigo.geneontology.org/amigo/term/GO:0070626
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0070626_(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)_succinate_lyase_(fumarate-forming)_activity

description:
  (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity


id: GO:0071596
description: Ubiquitin-dependent protein catabolic process via the N-end rule pathway
memo: https://amigo.geneontology.org/amigo/term/GO:0071596
golevel: 10
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0071596_Ubiquitin-dependent_protein_catabolic_process_via_the_N-end_rule_pathway


id: GO:0071951
description: Conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
memo: https://amigo.geneontology.org/amigo/term/GO:0071951
golevel: 12
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0071951_Conversion_of_methionyl-tRNA_to_N-formyl-methionyl-tRNA


id: GO:0072586
description: DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) regulator activity
memo: https://amigo.geneontology.org/amigo/term/GO:0072586
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0072586_DNA_topoisomerase_type_II_(double_strand_cut,_ATP-hydrolyzing)_regulator_activity


id: GO:0072599
description: Establishment of protein localization to endoplasmic reticulum
memo: https://amigo.geneontology.org/amigo/term/GO:0072599
golevel: 7
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0072599_Establishment_of_protein_localization_to_endoplasmic_reticulum


id: GO:0097171
description: ADP-L-glycero-beta-D-manno-heptose biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:0097171
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0097171_ADP-L-glycero-beta-D-manno-heptose_biosynthetic_process


id: GO:0097174
description: 1,6-anhydro-N-acetyl-beta-muramic acid metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0097174
golevel: 7
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0097174_1,6-anhydro-N-acetyl-beta-muramic_acid_metabolic_process


id: GO:0097175
description: 1,6-anhydro-N-acetyl-beta-muramic acid catabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:0097175
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0097175_1,6-anhydro-N-acetyl-beta-muramic_acid_catabolic_process


id: GO:0102027
description: S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0102027
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0102027_S-adenosylmethionine:2-demethylquinol-8_methyltransferase_activity


id: GO:0102094
description: S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0102094
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0102094_S-adenosylmethionine:2-demethylmenaquinol_methyltransferase_activity


id: GO:0102552
description: Lipoyl synthase activity (acting on glycine-cleavage complex H protein
memo: https://amigo.geneontology.org/amigo/term/GO:0102552
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0102552_Lipoyl_synthase_activity_(acting_on_glycine-cleavage_complex_H_protein


id: GO:0102553
description: Lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein)
memo: https://amigo.geneontology.org/amigo/term/GO:0102553
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0102553_Lipoyl_synthase_activity_(acting_on_pyruvate_dehydrogenase_E2_protein)


id: GO:0102955
description: S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity
memo: https://amigo.geneontology.org/amigo/term/GO:0102955
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0102955_S-adenosylmethionine:2-demethylmenaquinol-7_methyltransferase_activity


id: GO:0106074
description: aminoacyl-tRNA metabolism involved in translational fidelity
memo: https://amigo.geneontology.org/amigo/term/GO:0106074
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:0106074_aminoacyl-tRNA_metabolism_involved_in_translational_fidelity


id: GO:0140078
description: Class I DNA-(apurinic or apyrimidinic site) endonuclease activity
memo: https://amigo.geneontology.org/amigo/term/GO:0140078
golevel: 5
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:0140078_Class_I_DNA-(apurinic_or_apyrimidinic_site)_endonuclease_activity


id: GO:1900376
description: Regulation of secondary metabolite biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:1900376
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:1900376_Regulation_of_secondary_metabolite_biosynthetic_process


id: GO:1900377
description: Negative regulation of secondary metabolite biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:1900377
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:1900377_Negative_regulation_of_secondary_metabolite_biosynthetic_process


id: GO:1901505
description: Carbohydrate derivative transmembrane transporter activity
memo: https://amigo.geneontology.org/amigo/term/GO:1901505
golevel: 3
name:
  GOMF.STRING_v12.0_1356299_STRINGid_GO:1901505_Carbohydrate_derivative_transmembrane_transporter_activity


id: GO:1902021
description: Regulation of bacterial-type flagellum-dependent cell motility
memo: https://amigo.geneontology.org/amigo/term/GO:1902021
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:1902021_Regulation_of_bacterial-type_flagellum-dependent_cell_motility


id: GO:1902201
description: Negative regulation of bacterial-type flagellum-dependent cell motility
memo: https://amigo.geneontology.org/amigo/term/GO:1902201
golevel: 7
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:1902201_Negative_regulation_of_bacterial-type_flagellum-dependent_cell_motility


id: GO:1902221
description: Erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:1902221
golevel: 8
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:1902221_Erythrose_4-phosphate/phosphoenolpyruvate_family_amino_acid_metabolic_process


id: GO:1902223
description: Erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:1902223
golevel: 9
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:1902223_Erythrose_4-phosphate/phosphoenolpyruvate_family_amino_acid_biosynthetic_process


id: GO:1903507
description: Negative regulation of nucleic acid-templated transcription
memo: https://amigo.geneontology.org/amigo/term/GO:1903507
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:1903507_Negative_regulation_of_nucleic_acid-templated_transcription


id: GO:1903508
description: Positive regulation of nucleic acid-templated transcription
memo: https://amigo.geneontology.org/amigo/term/GO:1903508
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:1903508_Positive_regulation_of_nucleic_acid-templated_transcription


id: GO:1904950
description: Negative regulation of establishment of protein localization
memo: https://amigo.geneontology.org/amigo/term/GO:1904950
golevel: 7
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:1904950_Negative_regulation_of_establishment_of_protein_localization


id: GO:2000112
description: Regulation of cellular macromolecule biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:2000112
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:2000112_Regulation_of_cellular_macromolecule_biosynthetic_process


id: GO:2000113
description: Negative regulation of cellular macromolecule biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:2000113
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:2000113_Negative_regulation_of_cellular_macromolecule_biosynthetic_process


id: GO:2000371
description: Regulation of DNA topoisomerase (ATP-hydrolyzing) activity
memo: https://amigo.geneontology.org/amigo/term/GO:2000371
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:2000371_Regulation_of_DNA_topoisomerase_(ATP-hydrolyzing)_activity


id: GO:2000372
description: Negative regulation of DNA topoisomerase (ATP-hydrolyzing) activity
memo: https://amigo.geneontology.org/amigo/term/GO:2000372
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:2000372_Negative_regulation_of_DNA_topoisomerase_(ATP-hydrolyzing)_activity


id: GO:2001060
description: D-glycero-D-manno-heptose 7-phosphate metabolic process
memo: https://amigo.geneontology.org/amigo/term/GO:2001060
golevel: 5
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:2001060_D-glycero-D-manno-heptose_7-phosphate_metabolic_process


id: GO:2001061
description: D-glycero-D-manno-heptose 7-phosphate biosynthetic process
memo: https://amigo.geneontology.org/amigo/term/GO:2001061
golevel: 6
name:
  GOBP.STRING_v12.0_1356299_STRINGid_GO:2001061_D-glycero-D-manno-heptose_7-phosphate_biosynthetic_process


id: GOCC:0000015
description: Phosphopyruvate hydratase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0000015
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0000015_Phosphopyruvate_hydratase_complex


id: GOCC:0000178
description: Exosome (RNase complex)
memo: https://amigo.geneontology.org/amigo/term/GO:0000178
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0000178_Exosome_(RNase_complex)


id: GOCC:0000324
description: Fungal-type vacuole
memo: https://amigo.geneontology.org/amigo/term/GO:0000324
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0000324_Fungal-type_vacuole


id: GOCC:0000329
description: Fungal-type vacuole membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0000329
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0000329_Fungal-type_vacuole_membrane


id: GOCC:0000408
description: EKC/KEOPS complex
memo: https://amigo.geneontology.org/amigo/term/GO:0000408
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0000408_EKC/KEOPS_complex


id: GOCC:0000428
description: DNA-directed RNA polymerase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0000428
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0000428_DNA-directed_RNA_polymerase_complex


id: GOCC:0000502
description: Proteasome complex
memo: https://amigo.geneontology.org/amigo/term/GO:0000502
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0000502_Proteasome_complex


id: GOCC:0005576
description: Extracellular region
memo: https://amigo.geneontology.org/amigo/term/GO:0005576
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005576_Extracellular_region


id: GOCC:0005604
description: Basement membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0005604
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005604_Basement_membrane


id: GOCC:0005615
description: Extracellular space
memo: https://amigo.geneontology.org/amigo/term/GO:0005615
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005615_Extracellular_space


id: GOCC:0005740
description: Mitochondrial envelope
memo: https://amigo.geneontology.org/amigo/term/GO:0005740
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005740_Mitochondrial_envelope


id: GOCC:0005743
description: Mitochondrial inner membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0005743
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005743_Mitochondrial_inner_membrane


id: GOCC:0005746
description: Mitochondrial respirasome
memo: https://amigo.geneontology.org/amigo/term/GO:0005746
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005746_Mitochondrial_respirasome


id: GOCC:0005747
description: Mitochondrial respiratory chain complex I
memo: https://amigo.geneontology.org/amigo/term/GO:0005747
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005747_Mitochondrial_respiratory_chain_complex_I


id: GOCC:0005759
description: Mitochondrial matrix
memo: https://amigo.geneontology.org/amigo/term/GO:0005759
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005759_Mitochondrial_matrix


id: GOCC:0005774
description: Vacuolar membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0005774
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005774_Vacuolar_membrane


id: GOCC:0005783
description: Endoplasmic reticulum
memo: https://amigo.geneontology.org/amigo/term/GO:0005783
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005783_Endoplasmic_reticulum


id: GOCC:0005788
description: Endoplasmic reticulum lumen
memo: https://amigo.geneontology.org/amigo/term/GO:0005788
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005788_Endoplasmic_reticulum_lumen


id: GOCC:0005789
description: Endoplasmic reticulum membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0005789
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005789_Endoplasmic_reticulum_membrane


id: GOCC:0005798
description: Golgi-associated vesicle
memo: https://amigo.geneontology.org/amigo/term/GO:0005798
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005798_Golgi-associated_vesicle


id: GOCC:0005815
description: Microtubule organizing center
memo: https://amigo.geneontology.org/amigo/term/GO:0005815
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005815_Microtubule_organizing_center


id: GOCC:0005835
description: Fatty acid synthase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0005835
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005835_Fatty_acid_synthase_complex


id: GOCC:0005881
description: Cytoplasmic microtubule
memo: https://amigo.geneontology.org/amigo/term/GO:0005881
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005881_Cytoplasmic_microtubule


id: GOCC:0005887
description: Integral component of plasma membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0005887
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005887_Integral_component_of_plasma_membrane


id: GOCC:0005911
description: Cell-cell junction
memo: https://amigo.geneontology.org/amigo/term/GO:0005911
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005911_Cell-cell_junction


id: GOCC:0005945
description: 6-phosphofructokinase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0005945
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005945_6-phosphofructokinase_complex


id: GOCC:0005948
description: Acetolactate synthase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0005948
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005948_Acetolactate_synthase_complex


id: GOCC:0005951
description: Carbamoyl-phosphate synthase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0005951
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005951_Carbamoyl-phosphate_synthase_complex


id: GOCC:0005960
description: Glycine cleavage complex
memo: https://amigo.geneontology.org/amigo/term/GO:0005960
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005960_Glycine_cleavage_complex


id: GOCC:0005971
description: Ribonucleoside-diphosphate reductase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0005971
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0005971_Ribonucleoside-diphosphate_reductase_complex


id: GOCC:0008023
description: Transcription elongation factor complex
memo: https://amigo.geneontology.org/amigo/term/GO:0008023
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0008023_Transcription_elongation_factor_complex


id: GOCC:0009279
description: Cell outer membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0009279
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009279_Cell_outer_membrane


id: GOCC:0009288
description: Bacterial-type flagellum
memo: https://amigo.geneontology.org/amigo/term/GO:0009288
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009288_Bacterial-type_flagellum


id: GOCC:0009316
description: 3-isopropylmalate dehydratase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009316
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009316_3-isopropylmalate_dehydratase_complex


id: GOCC:0009317
description: acetyl-CoA carboxylase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009317
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009317_acetyl-CoA_carboxylase_complex


id: GOCC:0009318
description: Exodeoxyribonuclease VII complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009318
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009318_Exodeoxyribonuclease_VII_complex


id: GOCC:0009319
description: Cytochrome o ubiquinol oxidase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009319
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009319_Cytochrome_o_ubiquinol_oxidase_complex


id: GOCC:0009321
description: Alkyl hydroperoxide reductase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009321
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009321_Alkyl_hydroperoxide_reductase_complex


id: GOCC:0009326
description: Formate dehydrogenase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009326
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009326_Formate_dehydrogenase_complex


id: GOCC:0009328
description: phenylalanine-tRNA ligase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009328
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009328_phenylalanine-tRNA_ligase_complex


id: GOCC:0009330
description: DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009330
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009330_DNA_topoisomerase_type_II_(double_strand_cut,_ATP-hydrolyzing)_complex


id: GOCC:0009331
description: glycerol-3-phosphate dehydrogenase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009331
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009331_glycerol-3-phosphate_dehydrogenase_complex


id: GOCC:0009336
description: Sulfate adenylyltransferase complex (ATP)
memo: https://amigo.geneontology.org/amigo/term/GO:0009336
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009336_Sulfate_adenylyltransferase_complex_(ATP)


id: GOCC:0009337
description: Sulfite reductase complex (NADPH)
memo: https://amigo.geneontology.org/amigo/term/GO:0009337
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009337_Sulfite_reductase_complex_(NADPH)


id: GOCC:0009338
description: Exodeoxyribonuclease V complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009338
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009338_Exodeoxyribonuclease_V_complex


id: GOCC:0009344
description: Nitrite reductase complex [NAD(P)H]
memo: https://amigo.geneontology.org/amigo/term/GO:0009344
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009344_Nitrite_reductase_complex_[NAD(P)H]


id: GOCC:0009345
description: glycine-tRNA ligase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009345
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009345_glycine-tRNA_ligase_complex


id: GOCC:0009346
description: Citrate lyase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009346
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009346_Citrate_lyase_complex


id: GOCC:0009347
description: Aspartate carbamoyltransferase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009347
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009347_Aspartate_carbamoyltransferase_complex


id: GOCC:0009349
description: Riboflavin synthase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009349
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009349_Riboflavin_synthase_complex


id: GOCC:0009358
description: Polyphosphate kinase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009358
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009358_Polyphosphate_kinase_complex


id: GOCC:0009360
description: DNA polymerase III complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009360
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009360_DNA_polymerase_III_complex


id: GOCC:0009361
description: succinate-CoA ligase complex (ADP-forming)
memo: https://amigo.geneontology.org/amigo/term/GO:0009361
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009361_succinate-CoA_ligase_complex_(ADP-forming)


id: GOCC:0009368
description: Endopeptidase Clp complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009368
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009368_Endopeptidase_Clp_complex


id: GOCC:0009376
description: HslUV protease complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009376
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009376_HslUV_protease_complex


id: GOCC:0009379
description: Holliday junction helicase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009379
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009379_Holliday_junction_helicase_complex


id: GOCC:0009380
description: Excinuclease repair complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009380
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009380_Excinuclease_repair_complex


id: GOCC:0009382
description: Imidazoleglycerol-phosphate synthase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0009382
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009382_Imidazoleglycerol-phosphate_synthase_complex


id: GOCC:0009424
description: Bacterial-type flagellum hook
memo: https://amigo.geneontology.org/amigo/term/GO:0009424
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009424_Bacterial-type_flagellum_hook


id: GOCC:0009570
description: Chloroplast stroma
memo: https://amigo.geneontology.org/amigo/term/GO:0009570
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009570_Chloroplast_stroma


id: GOCC:0009897
description: External side of plasma membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0009897
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009897_External_side_of_plasma_membrane


id: GOCC:0009898
description: Cytoplasmic side of plasma membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0009898
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009898_Cytoplasmic_side_of_plasma_membrane


id: GOCC:0009941
description: Chloroplast envelope
memo: https://amigo.geneontology.org/amigo/term/GO:0009941
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0009941_Chloroplast_envelope


id: GOCC:0010008
description: Endosome membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0010008
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0010008_Endosome_membrane


id: GOCC:0012505
description: Endomembrane system
memo: https://amigo.geneontology.org/amigo/term/GO:0012505
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0012505_Endomembrane_system


id: GOCC:0012507
description: ER to Golgi transport vesicle membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0012507
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0012507_ER_to_Golgi_transport_vesicle_membrane


id: GOCC:0015627
description: Type II protein secretion system complex
memo: https://amigo.geneontology.org/amigo/term/GO:0015627
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0015627_Type_II_protein_secretion_system_complex


id: GOCC:0015629
description: Actin cytoskeleton
memo: https://amigo.geneontology.org/amigo/term/GO:0015629
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0015629_Actin_cytoskeleton


id: GOCC:0015630
description: Microtubule cytoskeleton
memo: https://amigo.geneontology.org/amigo/term/GO:0015630
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0015630_Microtubule_cytoskeleton


id: GOCC:0015934
description: Large ribosomal subunit
memo: https://amigo.geneontology.org/amigo/term/GO:0015934
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0015934_Large_ribosomal_subunit


id: GOCC:0015935
description: Small ribosomal subunit
memo: https://amigo.geneontology.org/amigo/term/GO:0015935
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0015935_Small_ribosomal_subunit


id: GOCC:0016021
description: Integral component of membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0016021
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0016021_Integral_component_of_membrane


id: GOCC:0016469
description: Proton-transporting two-sector ATPase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0016469
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0016469_Proton-transporting_two-sector_ATPase_complex


id: GOCC:0018995
description: Host cellular component
memo: https://amigo.geneontology.org/amigo/term/GO:0018995
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0018995_Host_cellular_component


id: GOCC:0019008
description: Molybdopterin synthase complex
memo: https://amigo.geneontology.org/amigo/term/GO:0019008
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0019008_Molybdopterin_synthase_complex


id: GOCC:0019812
description: Type I site-specific deoxyribonuclease complex
memo: https://amigo.geneontology.org/amigo/term/GO:0019812
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0019812_Type_I_site-specific_deoxyribonuclease_complex


id: GOCC:0019866
description: Organelle inner membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0019866
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0019866_Organelle_inner_membrane


id: GOCC:0019897
description: Extrinsic component of plasma membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0019897
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0019897_Extrinsic_component_of_plasma_membrane


id: GOCC:0019898
description: Extrinsic component of membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0019898
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0019898_Extrinsic_component_of_membrane


id: GOCC:0022625
description: Cytosolic large ribosomal subunit
memo: https://amigo.geneontology.org/amigo/term/GO:0022625
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0022625_Cytosolic_large_ribosomal_subunit


id: GOCC:0022626
description: Cytosolic ribosome
memo: https://amigo.geneontology.org/amigo/term/GO:0022626
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0022626_Cytosolic_ribosome


id: GOCC:0022627
description: Cytosolic small ribosomal subunit
memo: https://amigo.geneontology.org/amigo/term/GO:0022627
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0022627_Cytosolic_small_ribosomal_subunit


id: GOCC:0030076
description: Light-harvesting complex
memo: https://amigo.geneontology.org/amigo/term/GO:0030076
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030076_Light-harvesting_complex


id: GOCC:0030127
description: COPII vesicle coat
memo: https://amigo.geneontology.org/amigo/term/GO:0030127
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030127_COPII_vesicle_coat


id: GOCC:0030133
description: Transport vesicle
memo: https://amigo.geneontology.org/amigo/term/GO:0030133
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030133_Transport_vesicle


id: GOCC:0030134
description: COPII-coated ER to Golgi transport vesicle
memo: https://amigo.geneontology.org/amigo/term/GO:0030134
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030134_COPII-coated_ER_to_Golgi_transport_vesicle


id: GOCC:0030256
description: Type I protein secretion system complex
memo: https://amigo.geneontology.org/amigo/term/GO:0030256
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030256_Type_I_protein_secretion_system_complex


id: GOCC:0030288
description: Outer membrane-bounded periplasmic space
memo: https://amigo.geneontology.org/amigo/term/GO:0030288
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030288_Outer_membrane-bounded_periplasmic_space


id: GOCC:0030312
description: External encapsulating structure
memo: https://amigo.geneontology.org/amigo/term/GO:0030312
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030312_External_encapsulating_structure


id: GOCC:0030658
description: Transport vesicle membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0030658
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030658_Transport_vesicle_membrane


id: GOCC:0030659
description: Cytoplasmic vesicle membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0030659
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030659_Cytoplasmic_vesicle_membrane


id: GOCC:0030660
description: Golgi-associated vesicle membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0030660
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030660_Golgi-associated_vesicle_membrane


id: GOCC:0030662
description: Coated vesicle membrane
memo: https://amigo.geneontology.org/amigo/term/GO:0030662
name:
  Subcellular localization (COMPARTMENTS).STRING_v12.0_1356299_STRINGid_GOCC:0030662_Coated_vesicle_membrane


