# geneInfo

ensembl_gene_id: NC99_00040
symbol: KOH47171.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Salmonella virulence plasmid 65kDa B protein; TIGRFAM: Rhs_assc_core: RHS repeat-associated core domain; Pfam: Insecticide toxin TcdB middle/N-terminal region; Pfam: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; TIGRFAM: YD_repeat_2x: YD repeat (two copies).


ensembl_gene_id: NC99_00100
symbol: KOH47177.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helix-turn-helix domain; SMART: Helix-turn-helix XRE-family like proteins.


ensembl_gene_id: NC99_00170
symbol: KOH47155.1
gene_biotype: protein_coding
description:
  Hemolysin; SMART: Transporter associated domain; Pfam: CBS domain; Pfam: Domain of unknown function DUF21; Pfam: Transporter associated domain; SMART: Domain in cystathionine beta-synthase and other proteins; TIGRFAM: GldE: gliding motility-associated protein GldE.


ensembl_gene_id: NC99_00180
symbol: KOH47156.1
gene_biotype: protein_coding
description:
  Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: NC99_00200
symbol: KOH47158.1
gene_biotype: protein_coding
description:
  DNA-binding protein; SMART: bacterial (prokaryotic) histone like domain; Pfam: Bacterial DNA-binding protein; PRINTS: Prokaryotic integration host factor signature; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: NC99_00210
symbol: KOH47159.1
gene_biotype: protein_coding
description:
  Pfam: S1 RNA binding domain; Pfam: Ribonuclease E/G family; TIGRFAM: RNaseEG: ribonuclease, Rne/Rng family; SMART: Ribosomal protein S1-like RNA-binding domain.


ensembl_gene_id: NC99_00220
symbol: KOH47160.1
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein DsbD; Pfam: Cytochrome C biogenesis protein transmembrane region; Pfam: Thioredoxin-like domain; Pfam: Disulphide bond corrector protein DsbC.


ensembl_gene_id: NC99_00240
symbol: KOH47162.1
gene_biotype: protein_coding
description:
  Acetylornithine deacetylase; Pfam: Peptidase dimerisation domain; Pfam: Peptidase family M20/M25/M40.


ensembl_gene_id: NC99_00260
symbol: KOH47164.1
gene_biotype: protein_coding
description:
  Transporter; Pfam: Major Facilitator Superfamily; PRINTS: Tetracycline resistance protein TetB signature.


ensembl_gene_id: NC99_00290
symbol: KOH47167.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: Phenol hydroxylase reductase family signature; Pfam: Oxidoreductase FAD-binding domain; Pfam: Oxidoreductase NAD-binding domain.


ensembl_gene_id: NC99_00320
symbol: pyrF
gene_biotype: protein_coding
description:
  TIGRFAM: pyrF_sub2: orotidine 5'-phosphate decarboxylase; SMART: Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.


ensembl_gene_id: NC99_00330
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: NC99_00350
symbol: KOH47135.1
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Pfam: AIR synthase related protein, C-terminal domain.


ensembl_gene_id: NC99_00360
symbol: KOH47136.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: AraC bacterial regulatory protein HTH signature; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein.


ensembl_gene_id: NC99_00380
symbol: KOH47138.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: PKD domain; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; SMART: Repeats in polycystic kidney disease 1 (PKD1) and other proteins.


ensembl_gene_id: NC99_00400
symbol: KOH47140.1
gene_biotype: protein_coding
description:
  30S ribosomal protein S6 modification protein; Pfam: RimK-like ATP-grasp domain; Pfam: RimK-like ATPgrasp N-terminal domain.


ensembl_gene_id: NC99_00420
symbol: KOH47142.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: NC99_00450
symbol: KOH47145.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: NC99_00460
symbol: prmC
gene_biotype: protein_coding
description:
  Hypothetical protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: NC99_00510
symbol: rimM
gene_biotype: protein_coding
description:
  Hypothetical protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: NC99_00580
symbol: KOH47123.1
gene_biotype: protein_coding
description:
  TIGRFAM: CDF: cation diffusion facilitator family transporter; Pfam: Cation efflux family; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: NC99_00600
symbol: KOH47125.1
gene_biotype: protein_coding
description:
  PRINTS: Major intrinsic protein family signature; Pfam: Major intrinsic protein; TIGRFAM: MIP: MIP family channel proteins; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: NC99_00630
symbol: KOH47128.1
gene_biotype: protein_coding
description:
  AraC family transcriptional regulator; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Helix-turn-helix domain.


ensembl_gene_id: NC99_00680
symbol: KOH47102.1
gene_biotype: protein_coding
description:
  Pfam: UDP-glucose/GDP-mannose dehydrogenase family, central domain; SMART: UDP binding domain; Pfam: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: NDP-sugDHase: nucleotide sugar dehydrogenase; Pfam: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: NC99_00770
symbol: KOH47111.1
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; SMART: UDP binding domain; Pfam: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Pfam: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; TIGRFAM: NDP-sugDHase: nucleotide sugar dehydrogenase; Pfam: UDP-glucose/GDP-mannose dehydrogenase family, central domain; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: NC99_00800
symbol: KOH47114.1
gene_biotype: protein_coding
description:
  Pfam: UDP-glucose/GDP-mannose dehydrogenase family, central domain; Pfam: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: NDP-sugDHase: nucleotide sugar dehydrogenase; Pfam: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; SMART: UDP binding domain; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: NC99_00810
symbol: KOH47115.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: G-rich domain on putative tyrosine kinase; Pfam: Chain length determinant protein.


ensembl_gene_id: NC99_00830
symbol: KOH47117.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Polysaccharide biosynthesis/export protein; Pfam: Capsule biosynthesis GfcC; Pfam: SLBB domain.


ensembl_gene_id: NC99_00870
symbol: tatA
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: NC99_00880
symbol: KOH47045.1
gene_biotype: protein_coding
description:
  TIGRFAM: TIGR00054: RIP metalloprotease RseP; Pfam: Peptidase family M50; SMART: Domain present in PSD-95, Dlg, and ZO-1/2; Pfam: PDZ domain.


ensembl_gene_id: NC99_00890
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: NC99_00950
symbol: KOH47052.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.


ensembl_gene_id: NC99_01130
symbol: KOH47070.1
gene_biotype: protein_coding
description:
  Pfam: Phage-related minor tail protein; TIGRFAM: tape_meas_TP901: phage tail tape measure protein, TP901 family, core region.


ensembl_gene_id: NC99_01170
symbol: KOH47074.1
gene_biotype: protein_coding
description:
  Dimethylallyltranstransferase; Pfam: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: NC99_01190
symbol: atpD
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: NC99_01200
symbol: KOH47077.1
gene_biotype: protein_coding
description:
  TIGRFAM: ATP_synt_epsi: ATP synthase F1, epsilon subunit; Pfam: ATP synthase, Delta/Epsilon chain, beta-sandwich domain.


ensembl_gene_id: NC99_01220
symbol: KOH47079.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Aminotransferase class I and II; TIGRFAM: C_S_lyase_PatB: putative C-S lyase.


ensembl_gene_id: NC99_01320
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: NC99_01340
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: NC99_01350
symbol: obg
gene_biotype: protein_coding
description:
  GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: NC99_01370
symbol: KOH47094.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: MutS domain III; SMART: ATPase domain of DNA mismatch repair MUTS family; Pfam: MutS domain V.


ensembl_gene_id: NC99_01390
symbol: KOH47096.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: OmpA family; PRINTS: OMPA domain signature; Pfam: WD40-like Beta Propeller Repeat.


ensembl_gene_id: NC99_01400
symbol: KOH47097.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Bac_Flav_fam_1: Bacteroidetes-specific putative membrane protein; Pfam: Protein of unknown function (DUF3308).


ensembl_gene_id: NC99_01410
symbol: KOH47098.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: HYR domain; Pfam: C-terminal domain of CHU protein family; TIGRFAM: Bac_Flav_CTERM: gliding motility-associated C-terminal domain.


ensembl_gene_id: NC99_01460
symbol: KOH47016.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: NC99_01480
symbol: KOH47018.1
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: NC99_01490
symbol: KOH47019.1
gene_biotype: protein_coding
description:
  RNaseH ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.


ensembl_gene_id: NC99_01520
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: NC99_01650
symbol: kbl
gene_biotype: protein_coding
description:
  2-amino-3-ketobutyrate CoA ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.


ensembl_gene_id: NC99_01670
symbol: KOH47037.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Transcription elongation factor, GreA/GreB, C-term; Pfam: Rnk N-terminus.


ensembl_gene_id: NC99_01680
symbol: KOH47038.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: helix_turn_helix multiple antibiotic resistance protein; Pfam: Winged helix DNA-binding domain.


ensembl_gene_id: NC99_01700
symbol: KOH46992.1
gene_biotype: protein_coding
description:
  GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase; Pfam: NAD dependent epimerase/dehydratase family.


ensembl_gene_id: NC99_01720
symbol: KOH46994.1
gene_biotype: protein_coding
description:
  UDP-phosphate galactose phosphotransferase; Pfam: CoA-binding domain; TIGRFAM: EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Pfam: Bacterial sugar transferase.


ensembl_gene_id: NC99_01740
symbol: KOH46996.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: G-rich domain on putative tyrosine kinase; Pfam: Chain length determinant protein; TIGRFAM: eps_fam: capsular exopolysaccharide family; Pfam: AAA domain.


ensembl_gene_id: NC99_01790
symbol: KOH47001.1
gene_biotype: protein_coding
description:
  Zinc transporter ZitB; TIGRFAM: CDF: cation diffusion facilitator family transporter; Pfam: Cation efflux family.


ensembl_gene_id: NC99_01810
symbol: KOH47003.1
gene_biotype: protein_coding
description:
  PRINTS: Bacterial regulatory protein ArsR family signature; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, Arsenical Resistance Operon Repressor.


ensembl_gene_id: NC99_01830
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: NC99_01890
symbol: KOH47011.1
gene_biotype: protein_coding
description:
  Type I restriction-modification protein subunit M; Pfam: HsdM N-terminal domain; PRINTS: N12 class N6 adenine-specific DNA methyltransferase signature; Pfam: N-6 DNA Methylase.


ensembl_gene_id: NC99_01930
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: NC99_01950
symbol: ruvC
gene_biotype: protein_coding
description:
  Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: NC99_02010
symbol: KOH46991.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: NC99_02040
symbol: KOH46965.1
gene_biotype: protein_coding
description:
  Isomerase; TIGRFAM: PhzF_family: phenazine biosynthesis protein, PhzF family; Pfam: Phenazine biosynthesis-like protein; overlaps another CDS with the same product name.


ensembl_gene_id: NC99_02050
symbol: KOH46966.1
gene_biotype: protein_coding
description:
  Isomerase; Pfam: Phenazine biosynthesis-like protein; overlaps another CDS with the same product name.


ensembl_gene_id: NC99_02060
symbol: KOH46967.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480).


ensembl_gene_id: NC99_02160
symbol: KOH46977.1
gene_biotype: protein_coding
description:
  ACP S-malonyltransferase; TIGRFAM: fabD: malonyl CoA-acyl carrier protein transacylase; SMART: Acyl transferase domain in polyketide synthase (PKS) enzymes; Pfam: Acyl transferase domain.


ensembl_gene_id: NC99_02270
symbol: KOH46948.1
gene_biotype: protein_coding
description:
  Phosphatase; TIGRFAM: HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3; Pfam: Haloacid dehalogenase-like hydrolase; TIGRFAM: PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase.


ensembl_gene_id: NC99_02290
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: NC99_02320
symbol: KOH46953.1
gene_biotype: protein_coding
description:
  Ammonium transporter; PRINTS: Rhesus blood group protein signature; TIGRFAM: amt: ammonium transporter; Pfam: Ammonium Transporter Family.


ensembl_gene_id: NC99_02330
symbol: KOH46954.1
gene_biotype: protein_coding
description:
  PRINTS: P-II protein signature; Pfam: Nitrogen regulatory protein P-II; SMART: Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: NC99_02370
symbol: argH
gene_biotype: protein_coding
description:
  TIGRFAM: argH: argininosuccinate lyase; Pfam: Lyase; PRINTS: Fumarate lyase superfamily signature; PRINTS: Argininosuccinate lyase family signature.


ensembl_gene_id: NC99_02380
symbol: KOH46959.1
gene_biotype: protein_coding
description:
  Glutamate synthase; Pfam: GXGXG motif; Pfam: Conserved region in glutamate synthase; Pfam: Glutamine amidotransferases class-II; Pfam: Glutamate synthase central domain.


ensembl_gene_id: NC99_02390
symbol: KOH46960.1
gene_biotype: protein_coding
description:
  TIGRFAM: GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit; Pfam: Pyridine nucleotide-disulphide oxidoreductase; PRINTS: Adrenodoxin reductase family signature; Pfam: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster.


ensembl_gene_id: NC99_02410
symbol: KOH46841.1
gene_biotype: protein_coding
description:
  Chemotaxis protein CheY; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain.


ensembl_gene_id: NC99_02420
symbol: KOH46842.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: Bacterial extracellular solute-binding proteins, family 3; Pfam: His Kinase A (phospho-acceptor) domain; SMART: His Kinase A (phosphoacceptor) domain; SMART: Bacterial periplasmic substrate-binding proteins; SMART: Histidine kinase-like ATPases; Pfam: PAS domain; SMART: PAS domain; TIGRFAM: sensory_box: PAS domain S-box protein; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: NC99_02430
symbol: KOH46843.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: PAS fold; Pfam: PAS domain; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); TIGRFAM: sensory_box: PAS domain S-box protein; SMART: PAS domain.


ensembl_gene_id: NC99_02440
symbol: KOH46844.1
gene_biotype: protein_coding
description:
  Histidine kinase; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); TIGRFAM: sensory_box: PAS domain S-box protein; SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Pfam: PAS fold; Pfam: His Kinase A (phospho-acceptor) domain; SMART: His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: NC99_02500
symbol: KOH46850.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: 4Fe-4S dicluster domain; Pfam: CobQ/CobB/MinD/ParA nucleotide binding domain.


ensembl_gene_id: NC99_02520
symbol: ribA
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: NC99_02530
symbol: KOH46853.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family; Pfam: Thioesterase superfamily.


ensembl_gene_id: NC99_02550
symbol: KOH46855.1
gene_biotype: protein_coding
description:
  Pfam: Pyridine nucleotide-disulphide oxidoreductase; PRINTS: Pyridine nucleotide disulphide reductase class-I signature; Pfam: Rhodanese-like domain; SMART: Rhodanese Homology Domain; Pfam: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; PRINTS: FAD-dependent pyridine nucleotide reductase signature.


ensembl_gene_id: NC99_02560
symbol: KOH46856.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: NC99_02600
symbol: KOH46860.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: NC99_02610
symbol: KOH46861.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities.


ensembl_gene_id: NC99_02630
symbol: KOH46863.1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit alpha; Pfam: Helix-hairpin-helix motif; Pfam: PHP domain; Pfam: OB-fold nucleic acid binding domain; Pfam: Bacterial DNA polymerase III alpha subunit; SMART: DNA polymerase alpha chain like domain; TIGRFAM: polc: DNA polymerase III, alpha subunit.


ensembl_gene_id: NC99_02640
symbol: KOH46864.1
gene_biotype: protein_coding
description:
  PRINTS: Thioredoxin family signature; Pfam: Thioredoxin; TIGRFAM: thioredoxin: thioredoxin; Belongs to the thioredoxin family.


ensembl_gene_id: NC99_02650
symbol: KOH46865.1
gene_biotype: protein_coding
description:
  Pfam: Protein of unknown function (DUF2459); TIGRFAM: chp_urease_rgn: conserved hypothetical protein.


ensembl_gene_id: NC99_02730
symbol: KOH46873.1
gene_biotype: protein_coding
description:
  Pfam: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; SMART: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Pfam: Enolase C-terminal domain-like.


ensembl_gene_id: NC99_02750
symbol: murQ
gene_biotype: protein_coding
description:
  N-acetylmuramic acid-6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.


ensembl_gene_id: NC99_02770
symbol: KOH46877.1
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.


ensembl_gene_id: NC99_02790
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: NC99_02800
symbol: KOH46880.1
gene_biotype: protein_coding
description:
  tonB-dependent receptor; Pfam: Domain of unknown function (DUF4480); Pfam: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: NC99_02810
symbol: KOH46881.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial lipoate protein ligase C-terminus; Pfam: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoyltrans: lipoyltransferase and lipoate-protein ligase.


ensembl_gene_id: NC99_02840
symbol: KOH46884.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: PDZ domain; SMART: Domain present in PSD-95, Dlg, and ZO-1/2; Pfam: Aspartyl protease.


ensembl_gene_id: NC99_02860
symbol: KOH46886.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: NC99_02890
symbol: KOH46889.1
gene_biotype: protein_coding
description:
  Alpha-1 2-mannosidase; Pfam: Glycosyl hydrolase family 92; TIGRFAM: aman2_put: putative alpha-1,2-mannosidase.


ensembl_gene_id: NC99_02950
symbol: KOH46895.1
gene_biotype: protein_coding
description:
  C-terminal processing peptidase; SMART: Domain present in PSD-95, Dlg, and ZO-1/2; Pfam: PDZ domain; TIGRFAM: prc: C-terminal processing peptidase; Pfam: Peptidase family S41; SMART: tail specific protease; Belongs to the peptidase S41A family.


ensembl_gene_id: NC99_02960
symbol: KOH46896.1
gene_biotype: protein_coding
description:
  TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2.


ensembl_gene_id: NC99_03020
symbol: KOH46902.1
gene_biotype: protein_coding
description:
  Transporter; Pfam: TrkA-C domain; TIGRFAM: YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain; Pfam: Predicted Permease Membrane Region.


ensembl_gene_id: NC99_03100
symbol: KOH46910.1
gene_biotype: protein_coding
description:
  TIGRFAM: sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family.


ensembl_gene_id: NC99_03110
symbol: KOH46911.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase; Pfam: Fumarate reductase flavoprotein C-term; TIGRFAM: sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PRINTS: FAD-dependent pyridine nucleotide reductase signature; Pfam: FAD binding domain.


ensembl_gene_id: NC99_03120
symbol: KOH46912.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase; Pfam: 4Fe-4S dicluster domain; Pfam: 2Fe-2S iron-sulfur cluster binding domain.


ensembl_gene_id: NC99_03130
symbol: KOH46913.1
gene_biotype: protein_coding
description:
  Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.


ensembl_gene_id: NC99_03190
symbol: KOH46919.1
gene_biotype: protein_coding
description:
  Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acid; Pfam: Polysaccharide biosynthesis protein.


ensembl_gene_id: NC99_03240
symbol: KOH46924.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Hexapeptide repeat of succinyl-transferase; Pfam: Bacterial transferase hexapeptide (six repeats).


ensembl_gene_id: NC99_03300
symbol: KOH46930.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family; Pfam: Glycosyl transferase WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: NC99_03330
symbol: KOH46933.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Right handed beta helix region; SMART: LamG-like jellyroll fold domain; PRINTS: Cadherin signature; Pfam: Cadherin domain; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; TIGRFAM: para_beta_helix: parallel beta-helix repeat; Pfam: Concanavalin A-like lectin/glucanases superfamily; SMART: Parallel beta-helix repeats; SMART: Cadherin repeats.


ensembl_gene_id: NC99_03400
symbol: KOH46940.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: NC99_03420
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: NC99_03430
symbol: KOH46835.1
gene_biotype: protein_coding
description:
  L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.


ensembl_gene_id: NC99_03440
symbol: KOH46836.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: exoDNase_III: exodeoxyribonuclease III; TIGRFAM: xth: exodeoxyribonuclease III (xth); Pfam: Endonuclease/Exonuclease/phosphatase family.


ensembl_gene_id: NC99_03450
symbol: rsgA
gene_biotype: protein_coding
description:
  GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: NC99_03460
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: NC99_03470
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: NC99_03480
symbol: mnmG
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: NC99_03510
symbol: KOH46827.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.


ensembl_gene_id: NC99_03520
symbol: KOH46828.1
gene_biotype: protein_coding
description:
  ABC transporter permease; TIGRFAM: TIGR00056: conserved hypothetical protein; Pfam: Permease; Belongs to the MlaE permease family.


ensembl_gene_id: NC99_03540
symbol: KOH46830.1
gene_biotype: protein_coding
description:
  Lytic transglycosylase; SMART: Bacterial periplasmic substrate-binding proteins; Pfam: Transglycosylase SLT domain; Pfam: Bacterial extracellular solute-binding proteins, family 3.


ensembl_gene_id: NC99_03550
symbol: KOH46831.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: NUDIX domain; PRINTS: NUDIX hydrolase family signature; Belongs to the Nudix hydrolase family.


ensembl_gene_id: NC99_03560
symbol: KOH46832.1
gene_biotype: protein_coding
description:
  Pfam: Haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3.


ensembl_gene_id: NC99_03570
symbol: KOH46833.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial regulatory proteins, lacI family; SMART: helix_turn _helix lactose operon repressor; Pfam: Periplasmic binding protein-like domain.


ensembl_gene_id: NC99_03590
symbol: KOH46773.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Phage-related baseplate assembly protein; Pfam: Phage late control gene D protein (GPD); TIGRFAM: vgr_GE: Rhs element Vgr protein.


ensembl_gene_id: NC99_03660
symbol: KOH46780.1
gene_biotype: protein_coding
description:
  Pfam: ATPase family associated with various cellular activities (AAA); SMART: ATPases associated with a variety of cellular activities.


ensembl_gene_id: NC99_03700
symbol: KOH46784.1
gene_biotype: protein_coding
description:
  Transketolase; Pfam: Dehydrogenase E1 component; Pfam: Transketolase, C-terminal domain; Pfam: Transketolase, pyrimidine binding domain; SMART: Transketolase, pyrimidine binding domain.


ensembl_gene_id: NC99_03730
symbol: KOH46787.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: NC99_03780
symbol: KOH46792.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: PAS domain; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: Histidine kinase-like ATPases; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: His Kinase A (phosphoacceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_03860
symbol: KOH46800.1
gene_biotype: protein_coding
description:
  Pfam: Cellulase (glycosyl hydrolase family 5); TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: Carbohydrate binding domain; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: NC99_03950
symbol: KOH46809.1
gene_biotype: protein_coding
description:
  Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: NC99_03980
symbol: KOH46812.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glutathione peroxidase; PRINTS: Glutathione peroxidase family signature; Belongs to the glutathione peroxidase family.


ensembl_gene_id: NC99_04040
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: NC99_04050
symbol: KOH46819.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: NC99_04070
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: NC99_04080
symbol: yidC
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: NC99_04120
symbol: KOH46770.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family.


ensembl_gene_id: NC99_04180
symbol: KOH46767.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.


ensembl_gene_id: NC99_04210
symbol: KOH46705.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; SMART: DEAD-like helicases superfamily; Pfam: SNF2 family N-terminal domain; Pfam: Helicase conserved C-terminal domain; SMART: helicase superfamily c-terminal domain.


ensembl_gene_id: NC99_04330
symbol: KOH46717.1
gene_biotype: protein_coding
description:
  Beta-galactosidase; PRINTS: Glycosyl hydrolase family 2 signature; SMART: Beta galactosidase small chain; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2; Pfam: F5/8 type C domain; Pfam: Beta galactosidase small chain.


ensembl_gene_id: NC99_04390
symbol: KOH46723.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial regulatory proteins, tetR family; PRINTS: TetR bacterial regulatory protein HTH signature.


ensembl_gene_id: NC99_04430
symbol: KOH46727.1
gene_biotype: protein_coding
description:
  Macrolide ABC transporter ATP-binding protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.


ensembl_gene_id: NC99_04520
symbol: KOH46736.1
gene_biotype: protein_coding
description:
  phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: NC99_04550
symbol: KOH46739.1
gene_biotype: protein_coding
description:
  Pfam: Sodium:solute symporter family; TIGRFAM: sss: transporter, solute:sodium symporter (SSS) family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: NC99_04600
symbol: KOH46744.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.


ensembl_gene_id: NC99_04680
symbol: KOH46752.1
gene_biotype: protein_coding
description:
  2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: NC99_04750
symbol: KOH46759.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma-70 factor, Bacteroides expansion family 1.


ensembl_gene_id: NC99_04770
symbol: KOH46761.1
gene_biotype: protein_coding
description:
  Collagen-binding protein; Pfam: TonB-dependent Receptor Plug Domain; SMART: Secretin and TonB N terminus short domain; Pfam: Secretin and TonB N terminus short domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor; Pfam: Domain of unknown function (DUF4480); TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.


ensembl_gene_id: NC99_04790
symbol: KOH46763.1
gene_biotype: protein_coding
description:
  Alpha-1,2-mannosidase; TIGRFAM: aman2_put: putative alpha-1,2-mannosidase; Pfam: Glycosyl hydrolase family 92.


ensembl_gene_id: NC99_04880
symbol: KOH46648.1
gene_biotype: protein_coding
description:
  Pfam: ABC transporter; Pfam: AcrB/AcrD/AcrF family; PRINTS: Acriflavin resistance protein family signature; SMART: ATPases associated with a variety of cellular activities; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_04890
symbol: KOH46649.1
gene_biotype: protein_coding
description:
  PRINTS: Acriflavin resistance protein family signature; Pfam: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_04900
symbol: KOH46650.1
gene_biotype: protein_coding
description:
  Pfam: HlyD family secretion protein; TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: NC99_04930
symbol: KOH46653.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.


ensembl_gene_id: NC99_05020
symbol: KOH46662.1
gene_biotype: protein_coding
description:
  Pfam: His Kinase A (phospho-acceptor) domain; SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PRINTS: Bacterial sensor protein C-terminal signature; SMART: His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: NC99_05030
symbol: KOH46663.1
gene_biotype: protein_coding
description:
  Pfam: Transcriptional regulatory protein, C terminal; SMART: cheY-homologous receiver domain; SMART: Transcriptional regulatory protein, C terminal; Pfam: Response regulator receiver domain.


ensembl_gene_id: NC99_05080
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: NC99_05090
symbol: KOH46669.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Crp-like helix-turn-helix domain; SMART: helix_turn_helix, cAMP Regulatory protein; SMART: Cyclic nucleotide-monophosphate binding domain; Pfam: Cyclic nucleotide-binding domain.


ensembl_gene_id: NC99_05100
symbol: KOH46670.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: NC99_05130
symbol: rsmI
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: NC99_05140
symbol: KOH46674.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1; Pfam: Haloacid dehalogenase-like hydrolase; PRINTS: Haloacid dehalogenase/epoxide hydrolase family signature; TIGRFAM: YjjG/YfnB: HAD hydrolase, TIGR02254 family.


ensembl_gene_id: NC99_05160
symbol: KOH46676.1
gene_biotype: protein_coding
description:
  TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB-dependent Receptor Plug Domain; Pfam: TonB dependent receptor; Pfam: Domain of unknown function (DUF4480).


ensembl_gene_id: NC99_05230
symbol: KOH46683.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TonB dependent receptor; Pfam: Domain of unknown function (DUF4480); TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB-dependent Receptor Plug Domain; SMART: Secretin and TonB N terminus short domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Secretin and TonB N terminus short domain.


ensembl_gene_id: NC99_05260
symbol: KOH46686.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: NC99_05270
symbol: KOH46687.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: GyrI-like small molecule binding domain; Pfam: Polyketide cyclase / dehydrase and lipid transport; SMART: Bacterial transcription activator, effector binding domain.


ensembl_gene_id: NC99_05330
symbol: KOH46693.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Flavin containing amine oxidoreductase; PRINTS: Adrenodoxin reductase family signature; TIGRFAM: crtI_fam: phytoene desaturase.


ensembl_gene_id: NC99_05370
symbol: KOH46697.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: TIGR00022: uncharacterized protein, YhcH/YjgK/YiaL family; Pfam: Domain of unknown function (DUF386).


ensembl_gene_id: NC99_05410
symbol: KOH46701.1
gene_biotype: protein_coding
description:
  Alpha-rhamnosidase; Pfam: Alpha-L-rhamnosidase N-terminal domain; Pfam: Bacterial alpha-L-rhamnosidase.


ensembl_gene_id: NC99_05480
symbol: lysS
gene_biotype: protein_coding
description:
  PRINTS: Lysyl-tRNA synthetase signature; Pfam: tRNA synthetases class II (D, K and N); Pfam: OB-fold nucleic acid binding domain; TIGRFAM: lysS_bact: lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: NC99_05490
symbol: KOH46572.1
gene_biotype: protein_coding
description:
  Pfam: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Pfam: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; PRINTS: NAD-dependent glycerol-3-phosphate dehydrogenase signature; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: NC99_05500
symbol: pgi
gene_biotype: protein_coding
description:
  PRINTS: Glucose-6-phosphate isomerase signature; Pfam: Phosphoglucose isomerase; Belongs to the GPI family.


ensembl_gene_id: NC99_05560
symbol: KOH46579.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.


ensembl_gene_id: NC99_05680
symbol: KOH46591.1
gene_biotype: protein_coding
description:
  Pfam: Penicillin-binding Protein dimerisation domain; Pfam: Penicillin binding protein transpeptidase domain; TIGRFAM: pbp2_mrdA: penicillin-binding protein 2.


ensembl_gene_id: NC99_05710
symbol: KOH46594.1
gene_biotype: protein_coding
description:
  PRINTS: Bacterial cell shape determinant MreB/Mbl protein signature; TIGRFAM: mreB: cell shape determining protein, MreB/Mrl family; Pfam: MreB/Mbl protein.


ensembl_gene_id: NC99_05720
symbol: purH
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: MGS-like domain; Pfam: MGS-like domain; SMART: AICARFT/IMPCHase bienzyme; Pfam: AICARFT/IMPCHase bienzyme.


ensembl_gene_id: NC99_05760
symbol: KOH46599.1
gene_biotype: protein_coding
description:
  Ribosomal protein S6 modification protein; TIGRFAM: rimK_fam: alpha-L-glutamate ligases, RimK family; Pfam: RimK-like ATP-grasp domain; Belongs to the RimK family.


ensembl_gene_id: NC99_05790
symbol: rsmA
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: NC99_05860
symbol: KOH46609.1
gene_biotype: protein_coding
description:
  TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Domain of unknown function (DUF4480).


ensembl_gene_id: NC99_05880
symbol: KOH46611.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4.


ensembl_gene_id: NC99_05900
symbol: KOH46613.1
gene_biotype: protein_coding
description:
  Pfam: Oxidoreductase family, C-terminal alpha/beta domain; Pfam: Oxidoreductase family, NAD-binding Rossmann fold.


ensembl_gene_id: NC99_05920
symbol: KOH46615.1
gene_biotype: protein_coding
description:
  Pfam: Aldehyde dehydrogenase family; TIGRFAM: MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating).


ensembl_gene_id: NC99_05930
symbol: KOH46616.1
gene_biotype: protein_coding
description:
  AraC family transcriptional regulator; TIGRFAM: sss: transporter, solute:sodium symporter (SSS) family; Pfam: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: NC99_05940
symbol: KOH46617.1
gene_biotype: protein_coding
description:
  3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Pfam: Thiamine pyrophosphate enzyme, central domain; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Pfam: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Belongs to the TPP enzyme family.


ensembl_gene_id: NC99_05980
symbol: KOH46621.1
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: NC99_05990
symbol: KOH46622.1
gene_biotype: protein_coding
description:
  Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: His Kinase A (phosphoacceptor) domain; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_06000
symbol: KOH46623.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Transcriptional regulator; TIGRFAM: TIGR01033: DNA-binding regulatory protein, YebC/PmpR family.


ensembl_gene_id: NC99_06020
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: NC99_06030
symbol: KOH46626.1
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: NC99_06050
symbol: KOH46628.1
gene_biotype: protein_coding
description:
  Pfam: DNA recombination-mediator protein A; Pfam: Helix-hairpin-helix motif; TIGRFAM: dprA: DNA protecting protein DprA.


ensembl_gene_id: NC99_06090
symbol: KOH46632.1
gene_biotype: protein_coding
description:
  Pfam: Pyridoxal-dependent decarboxylase conserved domain; PRINTS: Aromatic-L-amino-acid decarboxylase signature.


ensembl_gene_id: NC99_06110
symbol: KOH46634.1
gene_biotype: protein_coding
description:
  Pfam: Protein of unknown function (DUF3308); TIGRFAM: Bac_Flav_fam_1: Bacteroidetes-specific putative membrane protein.


ensembl_gene_id: NC99_06120
symbol: KOH46635.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Bac_Flav_CTERM: gliding motility-associated C-terminal domain; Pfam: C-terminal domain of CHU protein family.


ensembl_gene_id: NC99_06160
symbol: KOH46639.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Pfam: MAM domain; Pfam: SprB repeat.


ensembl_gene_id: NC99_06200
symbol: KOH46481.1
gene_biotype: protein_coding
description:
  TIGRFAM: FtcD: glutamate formiminotransferase; Pfam: Formiminotransferase domain; Pfam: Formiminotransferase domain, N-terminal subdomain; Pfam: Formiminotransferase-cyclodeaminase.


ensembl_gene_id: NC99_06260
symbol: KOH46487.1
gene_biotype: protein_coding
description:
  SMART: Alpha-L-fucosidase; Pfam: Alpha-L-fucosidase; PRINTS: Glycosyl hydrolase family 29 signature.


ensembl_gene_id: NC99_06290
symbol: KOH46490.1
gene_biotype: protein_coding
description:
  Fis family transcriptional regulator; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; Pfam: Sigma-54 interaction domain; SMART: ATPases associated with a variety of cellular activities.


ensembl_gene_id: NC99_06320
symbol: coaD
gene_biotype: protein_coding
description:
  Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: NC99_06350
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: NC99_06370
symbol: KOH46498.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.


ensembl_gene_id: NC99_06380
symbol: KOH46499.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial regulatory proteins, luxR family; PRINTS: LuxR bacterial regulatory protein HTH signature; SMART: helix_turn_helix, Lux Regulon.


ensembl_gene_id: NC99_06430
symbol: KOH46504.1
gene_biotype: protein_coding
description:
  Low-affinity gluconate/H+ symporter GntU; TIGRFAM: gntP: transporter, gluconate:H+ symporter (GntP) family; Pfam: GntP family permease; PRINTS: Glutamate-aspartate symporter signature.


ensembl_gene_id: NC99_06440
symbol: KOH46505.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Oxidoreductase family, C-terminal alpha/beta domain; Pfam: Oxidoreductase family, NAD-binding Rossmann fold.


ensembl_gene_id: NC99_06450
symbol: KOH46506.1
gene_biotype: protein_coding
description:
  Pfam: Alcohol dehydrogenase GroES-like domain; Pfam: Zinc-binding dehydrogenase; SMART: Enoylreductase.


ensembl_gene_id: NC99_06460
symbol: KOH46507.1
gene_biotype: protein_coding
description:
  Pfam: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase.


ensembl_gene_id: NC99_06480
symbol: rsfS
gene_biotype: protein_coding
description:
  Hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: NC99_06490
symbol: ftsH
gene_biotype: protein_coding
description:
  Peptidase M41; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: NC99_06530
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine darboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: NC99_06540
symbol: KOH46515.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: NC99_06570
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: NC99_06580
symbol: KOH46519.1
gene_biotype: protein_coding
description:
  PRINTS: Aspartate/ornithine carbamoyltransferase superfamily signature; Pfam: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; PRINTS: Aspartate carbamoyltransferase signature; Pfam: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.


ensembl_gene_id: NC99_06590
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: NC99_06600
symbol: proB
gene_biotype: protein_coding
description:
  Gamma-glutamyl kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: NC99_06610
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: NC99_06620
symbol: KOH46523.1
gene_biotype: protein_coding
description:
  Pfam: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: NC99_06630
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: NC99_06670
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl phosphate synthase small subunit; PRINTS: Glutamine amidotransferase superfamily signature; Pfam: Glutamine amidotransferase class-I; TIGRFAM: CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit; PRINTS: Carbamoyl-phosphate synthase protein GATase domain signature; PRINTS: Anthranilate synthase component II signature; SMART: Carbamoyl-phosphate synthase small chain, CPSase domain; Pfam: Carbamoyl-phosphate synthase small chain, CPSase domain; Belongs to the CarA family.


ensembl_gene_id: NC99_06680
symbol: KOH46529.1
gene_biotype: protein_coding
description:
  TIGRFAM: CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit; Pfam: MGS-like domain; Pfam: Carbamoyl-phosphate synthase L chain, N-terminal domain; SMART: MGS-like domain; Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain; SMART: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Pfam: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; PRINTS: Carbamoyl-phosphate synthase protein CPSase domain signature.


ensembl_gene_id: NC99_06690
symbol: KOH46530.1
gene_biotype: protein_coding
description:
  Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: His Kinase A (phosphoacceptor) domain; SMART: PAS domain; Pfam: PAS domain.


ensembl_gene_id: NC99_06710
symbol: KOH46532.1
gene_biotype: protein_coding
description:
  Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.


ensembl_gene_id: NC99_06720
symbol: serC
gene_biotype: protein_coding
description:
  MFS transporter; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: NC99_06780
symbol: KOH46539.1
gene_biotype: protein_coding
description:
  Cytidyltransferase-related domain protein; Pfam: Cytidylyltransferase; TIGRFAM: cyt_tran_rel: cytidyltransferase-like domain.


ensembl_gene_id: NC99_06790
symbol: fcl
gene_biotype: protein_coding
description:
  GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.


ensembl_gene_id: NC99_06800
symbol: KOH46541.1
gene_biotype: protein_coding
description:
  2-oxoacid ferredoxin oxidoreductase subunit beta; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.


ensembl_gene_id: NC99_06810
symbol: KOH46542.1
gene_biotype: protein_coding
description:
  MFS transporter; TIGRFAM: OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg.


ensembl_gene_id: NC99_06900
symbol: KOH46551.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Surface antigen variable number repeat; TIGRFAM: OM_YaeT: outer membrane protein assembly complex, YaeT protein.


ensembl_gene_id: NC99_06910
symbol: KOH46552.1
gene_biotype: protein_coding
description:
  UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: NC99_06930
symbol: nadK
gene_biotype: protein_coding
description:
  Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: NC99_06950
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: NC99_07070
symbol: KOH46457.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sugar-binding cellulase-like; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: NC99_07090
symbol: KOH46459.1
gene_biotype: protein_coding
description:
  Endo-1,4-beta-xylanase; Pfam: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: NC99_07140
symbol: KOH46464.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Domain of unknown function (DUF4480); TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor; SMART: Secretin and TonB N terminus short domain; Pfam: Secretin and TonB N terminus short domain.


ensembl_gene_id: NC99_07160
symbol: KOH46466.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70 region 2.


ensembl_gene_id: NC99_07180
symbol: KOH46468.1
gene_biotype: protein_coding
description:
  Pfam: Acetyl-CoA hydrolase/transferase C-terminal domain; Pfam: Acetyl-CoA hydrolase/transferase N-terminal domain.


ensembl_gene_id: NC99_07190
symbol: KOH46469.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: metmalonyl_epim: methylmalonyl-CoA epimerase.


ensembl_gene_id: NC99_07230
symbol: KOH46473.1
gene_biotype: protein_coding
description:
  TIGRFAM: Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit; Pfam: Na+-transporting oxaloacetate decarboxylase beta subunit.


ensembl_gene_id: NC99_07300
symbol: KOH46419.1
gene_biotype: protein_coding
description:
  Dioxygenase; PRINTS: Glucose/ribitol dehydrogenase family signature; Pfam: short chain dehydrogenase; PRINTS: Short-chain dehydrogenase/reductase (SDR) superfamily signature.


ensembl_gene_id: NC99_07320
symbol: KOH46421.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: TIGR02436: four helix bundle protein; Pfam: 23S rRNA-intervening sequence protein.


ensembl_gene_id: NC99_07340
symbol: KOH46423.1
gene_biotype: protein_coding
description:
  Pfam: Oxidoreductase family, NAD-binding Rossmann fold; Pfam: Oxidoreductase family, C-terminal alpha/beta domain.


ensembl_gene_id: NC99_07360
symbol: pdxB
gene_biotype: protein_coding
description:
  Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.


ensembl_gene_id: NC99_07370
symbol: KOH46426.1
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: NC99_07410
symbol: KOH46430.1
gene_biotype: protein_coding
description:
  Inosine 5'-monophosphate dehydrogenase; Pfam: IMP dehydrogenase / GMP reductase domain; SMART: Domain in cystathionine beta-synthase and other proteins; Pfam: CBS domain.


ensembl_gene_id: NC99_07420
symbol: KOH46431.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: Rubredoxin signature; Pfam: Flavin reductase like domain; SMART: Flavin reductase like domain; Pfam: Rubredoxin.


ensembl_gene_id: NC99_07450
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: NC99_07470
symbol: KOH46436.1
gene_biotype: protein_coding
description:
  Pfam: Uncharacterized protein conserved in bacteria (DUF2179); Pfam: Uncharacterized BCR, YitT family COG1284.


ensembl_gene_id: NC99_07510
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: NC99_07530
symbol: KOH46442.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.


ensembl_gene_id: NC99_07540
symbol: KOH46443.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Transketolase, pyrimidine binding domain; Pfam: Transketolase, thiamine diphosphate binding domain; SMART: Transketolase, pyrimidine binding domain; Belongs to the transketolase family.


ensembl_gene_id: NC99_07570
symbol: KOH46446.1
gene_biotype: protein_coding
description:
  Altronate oxidoreductase; PRINTS: Mannitol dehydrogenase signature; Pfam: Mannitol dehydrogenase C-terminal domain; Pfam: Mannitol dehydrogenase Rossmann domain.


ensembl_gene_id: NC99_07580
symbol: KOH46447.1
gene_biotype: protein_coding
description:
  Altronate hydrolase; SMART:; Pfam: D-galactarate dehydratase / Altronate hydrolase, C terminus; Pfam: SAF domain.


ensembl_gene_id: NC99_07600
symbol: KOH46449.1
gene_biotype: protein_coding
description:
  Flavodoxin; SMART: Metallo-beta-lactamase superfamily; Pfam: Metallo-beta-lactamase superfamily; Pfam: Flavodoxin.


ensembl_gene_id: NC99_07610
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: NC99_07650
symbol: KOH46454.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl transferase 4-like domain; Pfam: Glycosyl transferases group 1.


ensembl_gene_id: NC99_07690
symbol: KOH46405.1
gene_biotype: protein_coding
description:
  Pfam: Conserved TM helix; Pfam: Mechanosensitive ion channel; Pfam: Domain of Unknown Function (DUF350).


ensembl_gene_id: NC99_07700
symbol: KOH46406.1
gene_biotype: protein_coding
description:
  Pfam: Anthranilate synthase component I, N terminal region; Pfam: chorismate binding enzyme; PRINTS: Anthranilate synthase component I signature.


ensembl_gene_id: NC99_07710
symbol: KOH46407.1
gene_biotype: protein_coding
description:
  PRINTS: Anthranilate synthase component II signature; Pfam: Glutamine amidotransferase class-I; PRINTS: Glutamine amidotransferase superfamily signature; PRINTS: Carbamoyl-phosphate synthase protein GATase domain signature; TIGRFAM: trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase.


ensembl_gene_id: NC99_07720
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: NC99_07750
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: NC99_07760
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: NC99_07790
symbol: KOH46415.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: LytTr DNA-binding domain; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain; Pfam: LytTr DNA-binding domain.


ensembl_gene_id: NC99_07810
symbol: KOH46389.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: LamG-like jellyroll fold domain; Pfam: Concanavalin A-like lectin/glucanases superfamily; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain.


ensembl_gene_id: NC99_07870
symbol: KOH46395.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TonB dependent receptor; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Domain of unknown function (DUF4480); Pfam: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family.


ensembl_gene_id: NC99_07900
symbol: KOH46398.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2.


ensembl_gene_id: NC99_07910
symbol: KOH46399.1
gene_biotype: protein_coding
description:
  Non-reducing end alpha-L-arabinofuranosidase; Pfam: Alpha-L-arabinofuranosidase C-terminus; Pfam: Carbohydrate binding domain; SMART: Alpha-L-arabinofuranosidase C-terminus.


ensembl_gene_id: NC99_07940
symbol: KOH46402.1
gene_biotype: protein_coding
description:
  SMART: Uracil DNA glycosylase superfamily; Pfam: Uracil DNA glycosylase superfamily; SMART: UreE urease accessory protein, C-terminal domain.


ensembl_gene_id: NC99_07950
symbol: KOH46364.1
gene_biotype: protein_coding
description:
  Collagen-binding protein; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor; Pfam: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; SMART: Secretin and TonB N terminus short domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.


ensembl_gene_id: NC99_08080
symbol: KOH46377.1
gene_biotype: protein_coding
description:
  Haloacid dehalogenase; Pfam: HAD-hyrolase-like; TIGRFAM: HAD-SF-IIA: HAD hydrolase, family IIA; Pfam: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: NC99_08180
symbol: KOH46387.1
gene_biotype: protein_coding
description:
  Pfam: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase.


ensembl_gene_id: NC99_08210
symbol: KOH46346.1
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: NC99_08230
symbol: KOH46348.1
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit alpha; SMART: Alanine dehydrogenase/PNT, C-terminal domain; SMART: Alanine dehydrogenase/PNT, N-terminal domain; Pfam: Alanine dehydrogenase/PNT, C-terminal domain; Pfam: Alanine dehydrogenase/PNT, N-terminal domain.


ensembl_gene_id: NC99_08270
symbol: KOH46352.1
gene_biotype: protein_coding
description:
  TIGRFAM: TypA_BipA: GTP-binding protein TypA/BipA; Pfam: Elongation factor Tu GTP binding domain; PRINTS: GTP-binding elongation factor signature; Pfam: Elongation factor Tu domain 2; Pfam: Elongation factor G C-terminus; SMART: Elongation factor G C-terminus; TIGRFAM: small_GTP: small GTP-binding protein domain.


ensembl_gene_id: NC99_08280
symbol: KOH46353.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Diacylglycerol kinase catalytic domain; TIGRFAM: TIGR00147: lipid kinase, YegS/Rv2252/BmrU family; SMART: Diacylglycerol kinase catalytic domain (presumed).


ensembl_gene_id: NC99_08300
symbol: hisI
gene_biotype: protein_coding
description:
  Pfam: Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: histidine_hisI: phosphoribosyl-ATP diphosphatase; Pfam: Phosphoribosyl-ATP pyrophosphohydrolase; In the N-terminal section; belongs to the PRA-CH family.


ensembl_gene_id: NC99_08330
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: NC99_08340
symbol: hisA
gene_biotype: protein_coding
description:
  Pfam: Histidine biosynthesis protein; TIGRFAM: TIGR00007: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase.


ensembl_gene_id: NC99_08350
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: NC99_08360
symbol: KOH46361.1
gene_biotype: protein_coding
description:
  S23 ribosomal protein; Pfam: 23S rRNA-intervening sequence protein; TIGRFAM: TIGR02436: four helix bundle protein.


ensembl_gene_id: NC99_08380
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: NC99_08390
symbol: KOH46302.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: LuxR bacterial regulatory protein HTH signature; SMART: helix_turn_helix, Lux Regulon; Pfam: Bacterial regulatory proteins, luxR family.


ensembl_gene_id: NC99_08450
symbol: KOH46308.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Pfam: Oxidoreductase NAD-binding domain; Pfam: Oxidoreductase FAD-binding domain.


ensembl_gene_id: NC99_08490
symbol: KOH46312.1
gene_biotype: protein_coding
description:
  Diapophytoene dehydrogenase; Pfam: Biotin-requiring enzyme; Pfam: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); Pfam: e3 binding domain.


ensembl_gene_id: NC99_08500
symbol: KOH46313.1
gene_biotype: protein_coding
description:
  2-oxoisovalerate dehydrogenase subunit beta; Pfam: Transketolase, C-terminal domain; Pfam: Dehydrogenase E1 component; SMART: Transketolase, pyrimidine binding domain; Pfam: Transketolase, pyrimidine binding domain.


ensembl_gene_id: NC99_08510
symbol: KOH46314.1
gene_biotype: protein_coding
description:
  Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.


ensembl_gene_id: NC99_08540
symbol: KOH46317.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Tetratricopeptide repeat; SMART: Tetratricopeptide repeats; Pfam: TPR repeat.


ensembl_gene_id: NC99_08550
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: NC99_08570
symbol: KOH46320.1
gene_biotype: protein_coding
description:
  PRINTS: ATP-dependent Clp protease ATP-binding subunit signature; Pfam: AAA domain (Cdc48 subfamily); Pfam: Clp amino terminal domain; Pfam: ATPase family associated with various cellular activities (AAA); Pfam: C-terminal, D2-small domain, of ClpB protein; Pfam: UvrB/uvrC motif; SMART: C-terminal, D2-small domain, of ClpB protein; SMART: ATPases associated with a variety of cellular activities; Belongs to the ClpA/ClpB family.


ensembl_gene_id: NC99_08590
symbol: KOH46322.1
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase; Pfam: Cache domain; SMART: Sigma factor PP2C-like phosphatases; Pfam: Stage II sporulation protein E (SpoIIE).


ensembl_gene_id: NC99_08620
symbol: KOH46325.1
gene_biotype: protein_coding
description:
  3-oxoacyl-ACP synthase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NC99_08670
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: NC99_08710
symbol: KOH46334.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Concanavalin A-like lectin/glucanases superfamily; Pfam: Glycerophosphoryl diester phosphodiesterase family; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain.


ensembl_gene_id: NC99_08780
symbol: KOH46341.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain.


ensembl_gene_id: NC99_08840
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: NC99_08850
symbol: KOH46291.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecQ; Pfam: DEAD/DEAH box helicase; SMART: helicase superfamily c-terminal domain; Pfam: Helicase conserved C-terminal domain; TIGRFAM: recQ_fam: ATP-dependent DNA helicase, RecQ family; SMART: DEAD-like helicases superfamily.


ensembl_gene_id: NC99_08880
symbol: KOH46294.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase; Pfam: S-adenosylmethionine-dependent methyltransferase.


ensembl_gene_id: NC99_08890
symbol: KOH46295.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); SMART: RNA recognition motif.


ensembl_gene_id: NC99_08910
symbol: pyrI
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Involved in allosteric regulation of aspartate carbamoyltransferase.


ensembl_gene_id: NC99_08920
symbol: pyrB
gene_biotype: protein_coding
description:
  TIGRFAM: asp_carb_tr: aspartate carbamoyltransferase; Pfam: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; PRINTS: Aspartate carbamoyltransferase signature; PRINTS: Aspartate/ornithine carbamoyltransferase superfamily signature; Pfam: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: NC99_08960
symbol: KOH46286.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Large family of predicted nucleotide-binding domains; TIGRFAM: TIGR00305: putative toxin-antitoxin system toxin component, PIN family; Pfam: PIN domain.


ensembl_gene_id: NC99_09010
symbol: KOH46275.1
gene_biotype: protein_coding
description:
  Non-reducing end alpha-L-arabinofuranosidase; Pfam: Alpha-L-arabinofuranosidase C-terminus; SMART: Alpha-L-arabinofuranosidase C-terminus.


ensembl_gene_id: NC99_09020
symbol: KOH46276.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Alpha-L-arabinofuranosidase C-terminus; SMART: Alpha-L-arabinofuranosidase C-terminus.


ensembl_gene_id: NC99_09030
symbol: KOH46277.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: Concanavalin A-like lectin/glucanases superfamily.


ensembl_gene_id: NC99_09060
symbol: KOH46280.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Domain of unknown function (DUF4480); Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Secretin and TonB N terminus short domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_09080
symbol: KOH46282.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2.


ensembl_gene_id: NC99_09120
symbol: KOH46247.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: GldM N-terminal domain; Pfam: GldM C-terminal domain; TIGRFAM: GldM_gliding: gliding motility-associated protein GldM.


ensembl_gene_id: NC99_09180
symbol: KOH46253.1
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter ATP-binding protein; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities.


ensembl_gene_id: NC99_09190
symbol: KOH46254.1
gene_biotype: protein_coding
description:
  Chemotaxis protein CheY; Pfam: Response regulator receiver domain; Pfam: PglZ domain; SMART: cheY-homologous receiver domain.


ensembl_gene_id: NC99_09240
symbol: KOH46259.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: NC99_09250
symbol: KOH46260.1
gene_biotype: protein_coding
description:
  methylated-DNA-[protein]-cysteine S-methyltransferase; Pfam: 6-O-methylguanine DNA methyltransferase, DNA binding domain.


ensembl_gene_id: NC99_09260
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: NC99_09270
symbol: KOH46262.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: GldH_lipo: gliding motility-associated lipoprotein GldH; Pfam: GldH lipoprotein.


ensembl_gene_id: NC99_09290
symbol: KOH46264.1
gene_biotype: protein_coding
description:
  Histidine kinase; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); SMART: PAS domain; SMART: Histidine kinase-like ATPases; Pfam: PAS fold; Pfam: PAS domain; TIGRFAM: sensory_box: PAS domain S-box protein; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Pfam: His Kinase A (phospho-acceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; SMART: His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: NC99_09320
symbol: pgk
gene_biotype: protein_coding
description:
  PRINTS: Phosphoglycerate kinase family signature; Pfam: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: NC99_09330
symbol: rpsP
gene_biotype: protein_coding
description:
  Pfam: Ribosomal protein S16; TIGRFAM: S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: NC99_09350
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: NC99_09360
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase 1; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the ArsC family.


ensembl_gene_id: NC99_09380
symbol: cysD
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase subunit 2; Pfam: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: CysD: sulfate adenylyltransferase, small subunit.


ensembl_gene_id: NC99_09390
symbol: cysN
gene_biotype: protein_coding
description:
  Adenylylsulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: NC99_09510
symbol: KOH46223.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Pfam: HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: NC99_09520
symbol: KOH46224.1
gene_biotype: protein_coding
description:
  Cation transporter; PRINTS: Acriflavin resistance protein family signature; Pfam: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_09610
symbol: KOH46233.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: AcrB/AcrD/AcrF family; PRINTS: Acriflavin resistance protein family signature; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_09620
symbol: KOH46184.1
gene_biotype: protein_coding
description:
  RND transporter; Pfam: HlyD family secretion protein; TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: NC99_09630
symbol: KOH46185.1
gene_biotype: protein_coding
description:
  PRINTS: P-II protein signature; Pfam: Nitrogen regulatory protein P-II; SMART: Nitrogen regulatory protein P-II.


ensembl_gene_id: NC99_09640
symbol: KOH46186.1
gene_biotype: protein_coding
description:
  PRINTS: Cadmium-transporting ATPase signature; Pfam: E1-E2 ATPase; TIGRFAM: ATPase-IB_hvy: heavy metal translocating P-type ATPase; Pfam: haloacid dehalogenase-like hydrolase; PRINTS: P-type cation-transporting ATPase superfamily signature; TIGRFAM: ATPase_P-type: HAD ATPase, P-type, family IC; TIGRFAM: ATPase-IB2_Cd: cadmium-translocating P-type ATPase; Pfam: Heavy-metal-associated domain.


ensembl_gene_id: NC99_09650
symbol: KOH46187.1
gene_biotype: protein_coding
description:
  Biotin synthase; Pfam: Radical SAM superfamily; SMART: Elongator protein 3, MiaB family, Radical SAM; TIGRFAM: rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE.


ensembl_gene_id: NC99_09770
symbol: KOH46199.1
gene_biotype: protein_coding
description:
  Cobalt transporter; Pfam: Cation efflux family; TIGRFAM: CDF: cation diffusion facilitator family transporter.


ensembl_gene_id: NC99_09790
symbol: KOH46201.1
gene_biotype: protein_coding
description:
  CzcA family heavy metal efflux pump; Pfam: AcrB/AcrD/AcrF family; PRINTS: Acriflavin resistance protein family signature; TIGRFAM: 2A0601: heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_09810
symbol: KOH46203.1
gene_biotype: protein_coding
description:
  Zinc transporter ZitB; Pfam: Cation efflux family; TIGRFAM: CDF: cation diffusion facilitator family transporter.


ensembl_gene_id: NC99_09910
symbol: KOH46213.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Uncharacterised ACR, COG2135; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: NC99_10040
symbol: KOH46177.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate ABC transporter permease; Pfam: Tripartite ATP-independent periplasmic transporters, DctQ component.


ensembl_gene_id: NC99_10050
symbol: KOH46178.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: dctP: TRAP transporter solute receptor, DctP family; Pfam: Bacterial extracellular solute-binding protein, family 7.


ensembl_gene_id: NC99_10130
symbol: KOH46150.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Tetratricopeptide repeat; SMART: Tetratricopeptide repeats; Pfam: WD40-like Beta Propeller Repeat; PRINTS: OMPA domain signature; Pfam: OmpA family.


ensembl_gene_id: NC99_10140
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: NC99_10180
symbol: KOH46155.1
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase; TIGRFAM: PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family; TIGRFAM: PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific; Pfam: Phosphorylase superfamily.


ensembl_gene_id: NC99_10190
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: NC99_10200
symbol: KOH46157.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: SppA_67K: signal peptide peptidase SppA, 67K type; Pfam: Peptidase family S49; TIGRFAM: SppA_dom: signal peptide peptidase SppA, 36K type.


ensembl_gene_id: NC99_10210
symbol: KOH46158.1
gene_biotype: protein_coding
description:
  TIGRFAM: folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; Pfam: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK).


ensembl_gene_id: NC99_10320
symbol: KOH46169.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial regulatory helix-turn-helix protein, lysR family; PRINTS: LysR bacterial regulatory protein HTH signature; Pfam: LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: NC99_10370
symbol: KOH46125.1
gene_biotype: protein_coding
description:
  Cold-shock protein, molecular chaperone,RNA-helicase co-factor; Pfam: 'Cold-shock' DNA-binding domain; SMART: Cold shock protein domain; PRINTS: Cold shock protein signature.


ensembl_gene_id: NC99_10380
symbol: KOH46126.1
gene_biotype: protein_coding
description:
  RNA-binding protein; SMART: RNA recognition motif; Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain).


ensembl_gene_id: NC99_10390
symbol: KOH46127.1
gene_biotype: protein_coding
description:
  TIGRFAM: asp_kinases: aspartate kinase; Pfam: Amino acid kinase family; Belongs to the aspartokinase family.


ensembl_gene_id: NC99_10410
symbol: KOH46129.1
gene_biotype: protein_coding
description:
  PRINTS: GntR bacterial regulatory protein HTH signature; SMART:; Pfam: Bacterial regulatory proteins, gntR family; Pfam: UTRA domain; SMART: helix_turn_helix gluconate operon transcriptional repressor.


ensembl_gene_id: NC99_10420
symbol: KOH46130.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: e3 binding domain; Pfam: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); Pfam: Biotin-requiring enzyme.


ensembl_gene_id: NC99_10430
symbol: KOH46131.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; PRINTS: Pyridine nucleotide disulphide reductase class-I signature; Pfam: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: lipoamide_DH: dihydrolipoyl dehydrogenase; PRINTS: FAD-dependent pyridine nucleotide reductase signature; Pfam: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.


ensembl_gene_id: NC99_10440
symbol: KOH46132.1
gene_biotype: protein_coding
description:
  30S ribosomal protein S23; Pfam: 23S rRNA-intervening sequence protein; TIGRFAM: TIGR02436: four helix bundle protein.


ensembl_gene_id: NC99_10450
symbol: KOH46133.1
gene_biotype: protein_coding
description:
  Pfam: Dehydrogenase E1 component; SMART: Transketolase, pyrimidine binding domain; Pfam: Transketolase, C-terminal domain; Pfam: Transketolase, pyrimidine binding domain.


ensembl_gene_id: NC99_10530
symbol: KOH46141.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: asp_race: aspartate racemase; Pfam: Asp/Glu/Hydantoin racemase; Belongs to the aspartate/glutamate racemases family.


ensembl_gene_id: NC99_10540
symbol: KOH46142.1
gene_biotype: protein_coding
description:
  Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.


ensembl_gene_id: NC99_10560
symbol: KOH46144.1
gene_biotype: protein_coding
description:
  Pfam: Hemerythrin HHE cation binding domain; Pfam: Family of unknown function (DUF438); Pfam: PAS domain.


ensembl_gene_id: NC99_10620
symbol: KOH46098.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TonB dependent receptor; Pfam: Domain of unknown function (DUF4480); TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Secretin and TonB N terminus short domain; TIGRFAM: OMP85_target: outer membrane insertion C-terminal signal.


ensembl_gene_id: NC99_10770
symbol: KOH46113.1
gene_biotype: protein_coding
description:
  Cysteine hydrolase; TIGRFAM: cytochr_NrfH: cytochrome c nitrate reductase, small subunit; Pfam: NapC/NirT cytochrome c family, N-terminal region.


ensembl_gene_id: NC99_10780
symbol: nrfA
gene_biotype: protein_coding
description:
  Cytochrome C nitrite reductase subunit c552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.


ensembl_gene_id: NC99_10840
symbol: KOH46120.1
gene_biotype: protein_coding
description:
  Pfam: Low molecular weight phosphotyrosine protein phosphatase; PRINTS: LMW phosphotyrosine protein phosphatase signature; SMART: Low molecular weight phosphatase family.


ensembl_gene_id: NC99_10860
symbol: hppA
gene_biotype: protein_coding
description:
  Potassium transporter; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.


ensembl_gene_id: NC99_10920
symbol: KOH46067.1
gene_biotype: protein_coding
description:
  Transcriptional activator RfaH; SMART: In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold; Pfam: Transcription termination factor nusG.


ensembl_gene_id: NC99_10940
symbol: KOH46069.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: TetR bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory proteins, tetR family.


ensembl_gene_id: NC99_11040
symbol: KOH46079.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Alanine dehydrogenase/PNT, C-terminal domain; SMART: Alanine dehydrogenase/PNT, N-terminal domain; Pfam: Alanine dehydrogenase/PNT, N-terminal domain; SMART: Alanine dehydrogenase/PNT, C-terminal domain.


ensembl_gene_id: NC99_11130
symbol: KOH46088.1
gene_biotype: protein_coding
description:
  Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: NC99_11150
symbol: KOH46090.1
gene_biotype: protein_coding
description:
  tonB-dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; SMART: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_11180
symbol: KOH46093.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: NC99_11240
symbol: KOH46056.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: Phenol hydroxylase reductase family signature; Pfam: Oxidoreductase FAD-binding domain; Pfam: Oxidoreductase NAD-binding domain; PRINTS: Flavoprotein pyridine nucleotide cytochrome reductase signature.


ensembl_gene_id: NC99_11250
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: NC99_11270
symbol: KOH46059.1
gene_biotype: protein_coding
description:
  TIGRFAM: nspC: carboxynorspermidine decarboxylase; Pfam: Pyridoxal-dependent decarboxylase, C-terminal sheet domain.


ensembl_gene_id: NC99_11320
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: NC99_11340
symbol: KOH46045.1
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit B; SMART: Histidine kinase-like ATPases; SMART: TopoisomeraseII; PRINTS: DNA topoisomerase II family signature; Pfam: DNA gyrase B; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Pfam: DNA gyrase B subunit, carboxyl terminus; Pfam: Toprim domain.


ensembl_gene_id: NC99_11350
symbol: KOH46046.1
gene_biotype: protein_coding
description:
  Non-specific DNA-binding protein Dps; Pfam: Ferritin-like domain; PRINTS: Helicobacter neutrophil-activating protein A family signature; Belongs to the Dps family.


ensembl_gene_id: NC99_11420
symbol: KOH46012.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: 23S rRNA-intervening sequence protein; TIGRFAM: TIGR02436: four helix bundle protein.


ensembl_gene_id: NC99_11430
symbol: KOH46013.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase; Pfam: Iron hydrogenase small subunit; Pfam: 2Fe-2S iron-sulfur cluster binding domain; Pfam: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Pfam: 4Fe-4S dicluster domain; TIGRFAM: FeFe_hydrog_A: [FeFe] hydrogenase, group A; SMART: Iron hydrogenase small subunit; Pfam: Iron only hydrogenase large subunit, C-terminal domain; SMART: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region.


ensembl_gene_id: NC99_11440
symbol: KOH46014.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Pfam: 4Fe-4S dicluster domain; Pfam: Respiratory-chain NADH dehydrogenase 51 Kd subunit; Pfam: SLBB domain; Pfam: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Pfam: Thioredoxin-like [2Fe-2S] ferredoxin; SMART: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region.


ensembl_gene_id: NC99_11460
symbol: KOH46016.1
gene_biotype: protein_coding
description:
  SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_11470
symbol: KOH46017.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: PHP-associated; SMART: DNA polymerase alpha chain like domain; Pfam: PHP domain.


ensembl_gene_id: NC99_11490
symbol: KOH46019.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Putative Fe-S cluster; Pfam: 4Fe-4S dicluster domain; Pfam: Iron only hydrogenase large subunit, C-terminal domain.


ensembl_gene_id: NC99_11520
symbol: KOH46022.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: PAS domain; Pfam: PAS domain; Pfam: PAS fold; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain).


ensembl_gene_id: NC99_11530
symbol: KOH46023.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Sigma factor PP2C-like phosphatases; Pfam: Stage II sporulation protein E (SpoIIE).


ensembl_gene_id: NC99_11550
symbol: KOH46025.1
gene_biotype: protein_coding
description:
  SMART: helicase superfamily c-terminal domain; Pfam: Helicase conserved C-terminal domain; Pfam: DEAD/DEAH box helicase; Pfam: DbpA RNA binding domain; SMART: DEAD-like helicases superfamily.


ensembl_gene_id: NC99_11600
symbol: KOH46030.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Aerotolerance regulator N-terminal; TIGRFAM: two_anch: N-terminal double-transmembrane domain.


ensembl_gene_id: NC99_11620
symbol: KOH46032.1
gene_biotype: protein_coding
description:
  Pfam: MerR HTH family regulatory protein; SMART: helix_turn_helix, mercury resistance; Pfam: B12 binding domain.


ensembl_gene_id: NC99_11630
symbol: KOH46033.1
gene_biotype: protein_coding
description:
  Pfam: PAS fold; SMART: Histidine kinase-like ATPases; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); SMART: PAS domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: His Kinase A (phospho-acceptor) domain; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: His Kinase A (phosphoacceptor) domain; Pfam: 5TMR of 5TMR-LYT; Pfam: PAS domain.


ensembl_gene_id: NC99_11660
symbol: KOH46036.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_11720
symbol: KOH45999.1
gene_biotype: protein_coding
description:
  Hisitidine kinase; Pfam: Response regulator receiver domain; SMART: helix_turn_helix, Lux Regulon; Pfam: Bacterial regulatory proteins, luxR family; SMART: cheY-homologous receiver domain; PRINTS: LuxR bacterial regulatory protein HTH signature.


ensembl_gene_id: NC99_11730
symbol: KOH46000.1
gene_biotype: protein_coding
description:
  Pfam: Histidine kinase; SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: NC99_11770
symbol: KOH46004.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Phage integrase family; Pfam: Phage integrase SAM-like domain; Belongs to the 'phage' integrase family.


ensembl_gene_id: NC99_11860
symbol: KOH45996.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: AAA ATPase domain; SMART: ATPases associated with a variety of cellular activities.


ensembl_gene_id: NC99_11900
symbol: KOH45993.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Methyltransferase FkbM domain; TIGRFAM: fkbM_fam: methyltransferase, FkbM family.


ensembl_gene_id: NC99_11920
symbol: KOH45988.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: Glycosyl hydrolases family 2; Pfam: Glycosyl hydrolases family 2, TIM barrel domain.


ensembl_gene_id: NC99_11940
symbol: KOH45990.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: Glycosyl hydrolase family 2 signature; Pfam: Glycosyl hydrolases family 2; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: NC99_11990
symbol: KOH45987.1
gene_biotype: protein_coding
description:
  Beta-galactosidase; PRINTS: Glycosyl hydrolase family 2 signature; Pfam: Glycosyl hydrolases family 2; SMART: Beta galactosidase small chain; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; Pfam: Beta galactosidase small chain.


ensembl_gene_id: NC99_12000
symbol: KOH45955.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein; PRINTS: AraC bacterial regulatory protein HTH signature.


ensembl_gene_id: NC99_12120
symbol: KOH45967.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Pfam: ATP-dependent DNA helicase recG C-terminal; Pfam: Divergent AAA domain.


ensembl_gene_id: NC99_12150
symbol: KOH45970.1
gene_biotype: protein_coding
description:
  Esterase; Pfam: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Pfam: Putative esterase.


ensembl_gene_id: NC99_12170
symbol: KOH45972.1
gene_biotype: protein_coding
description:
  Pfam: Ribose/Galactose Isomerase; TIGRFAM: RPI_actino: ribose 5-phosphate isomerase; TIGRFAM: rpiB: ribose 5-phosphate isomerase B; TIGRFAM: rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family.


ensembl_gene_id: NC99_12210
symbol: KOH45976.1
gene_biotype: protein_coding
description:
  Pfam: AIR synthase related protein, N-terminal domain; Pfam: AIR synthase related protein, C-terminal domain.


ensembl_gene_id: NC99_12240
symbol: KOH45979.1
gene_biotype: protein_coding
description:
  PRINTS: AraC bacterial regulatory protein HTH signature; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein; Pfam: AraC-like ligand binding domain.


ensembl_gene_id: NC99_12270
symbol: rhaA
gene_biotype: protein_coding
description:
  Pfam: L-rhamnose isomerase (RhaA); TIGRFAM: rhaA: L-rhamnose isomerase; Belongs to the rhamnose isomerase family.


ensembl_gene_id: NC99_12300
symbol: KOH45953.1
gene_biotype: protein_coding
description:
  Aminopeptidase; Pfam: Papain family cysteine protease; Pfam: Peptidase C1-like family; Belongs to the peptidase C1 family.


ensembl_gene_id: NC99_12330
symbol: KOH45945.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Transposase C of IS166 homeodomain; Pfam: Transposase IS66 family; Pfam: zinc-finger binding domain of transposase IS66.


ensembl_gene_id: NC99_12360
symbol: KOH45948.1
gene_biotype: protein_coding
description:
  Alpha-glucosidase; Pfam: Glycosyl-hydrolase 97 C-terminal, oligomerisation; Pfam: Glycosyl-hydrolase 97 N-terminal; Pfam: Glycoside hydrolase 97.


ensembl_gene_id: NC99_12470
symbol: KOH45923.1
gene_biotype: protein_coding
description:
  Pfam: Thioredoxin; PRINTS: Thioredoxin family signature; TIGRFAM: thioredoxin: thioredoxin; Belongs to the thioredoxin family.


ensembl_gene_id: NC99_12480
symbol: KOH45924.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TPR repeat; Pfam: Tetratricopeptide repeat; SMART: Tetratricopeptide repeats.


ensembl_gene_id: NC99_12520
symbol: KOH45928.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: helix_turn_helix gluconate operon transcriptional repressor; Pfam: Bacterial regulatory proteins, gntR family.


ensembl_gene_id: NC99_12540
symbol: KOH45930.1
gene_biotype: protein_coding
description:
  Oxidoreductase; PRINTS: Glucose/ribitol dehydrogenase family signature; Pfam: short chain dehydrogenase; PRINTS: Short-chain dehydrogenase/reductase (SDR) superfamily signature.


ensembl_gene_id: NC99_12560
symbol: KOH45932.1
gene_biotype: protein_coding
description:
  Pfam: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: NC99_12570
symbol: KOH45933.1
gene_biotype: protein_coding
description:
  Glucosylceramidase; Pfam: O-Glycosyl hydrolase family 30; Belongs to the glycosyl hydrolase 30 family.


ensembl_gene_id: NC99_12630
symbol: KOH45939.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helicase conserved C-terminal domain; SMART: helicase superfamily c-terminal domain; SMART: DEAD-like helicases superfamily; Pfam: SNF2 family N-terminal domain.


ensembl_gene_id: NC99_12640
symbol: KOH45940.1
gene_biotype: protein_coding
description:
  Carbohydrate-binding protein SusD; Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.


ensembl_gene_id: NC99_12650
symbol: KOH45941.1
gene_biotype: protein_coding
description:
  Collagen-binding protein; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; SMART: Secretin and TonB N terminus short domain; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: NC99_12700
symbol: KOH45894.1
gene_biotype: protein_coding
description:
  Chromosome partitioning protein ParB; SMART: ParB-like nuclease domain; TIGRFAM: parB_part: ParB/RepB/Spo0J family partition protein; Pfam: ParB-like nuclease domain; Belongs to the ParB family.


ensembl_gene_id: NC99_12740
symbol: KOH45898.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: MBOAT, membrane-bound O-acyltransferase family; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: NC99_12990
symbol: KOH45867.1
gene_biotype: protein_coding
description:
  Glycerate dehydrogenase; Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: NC99_13000
symbol: KOH45868.1
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase E2; Pfam: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); Pfam: Biotin-requiring enzyme; TIGRFAM: sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex.


ensembl_gene_id: NC99_13010
symbol: KOH45869.1
gene_biotype: protein_coding
description:
  TIGRFAM: 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component; Pfam: Transketolase, pyrimidine binding domain; Pfam: Dehydrogenase E1 component; SMART: Transketolase, pyrimidine binding domain.


ensembl_gene_id: NC99_13040
symbol: KOH45872.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: fkbM_fam: methyltransferase, FkbM family; Pfam: Methyltransferase FkbM domain.


ensembl_gene_id: NC99_13050
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: NC99_13060
symbol: ftsY
gene_biotype: protein_coding
description:
  Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: NC99_13100
symbol: rpmG
gene_biotype: protein_coding
description:
  Pfam: Ribosomal protein L33; TIGRFAM: rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: NC99_13110
symbol: rpmB
gene_biotype: protein_coding
description:
  Pfam: Ribosomal L28 family; TIGRFAM: L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: NC99_13170
symbol: KOH45885.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; SMART: helicase superfamily c-terminal domain; Pfam: DEAD/DEAH box helicase; Pfam: Helicase conserved C-terminal domain; SMART: DEAD-like helicases superfamily; Belongs to the DEAD box helicase family.


ensembl_gene_id: NC99_13200
symbol: KOH45888.1
gene_biotype: protein_coding
description:
  PRINTS: H+-transporting ATPase (proton pump) signature; Pfam: E1-E2 ATPase; TIGRFAM: ATPase-IB1_Cu: copper-translocating P-type ATPase; PRINTS: P-type cation-transporting ATPase superfamily signature; Pfam: haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase-IB_hvy: heavy metal translocating P-type ATPase; TIGRFAM: ATPase_P-type: HAD ATPase, P-type, family IC.


ensembl_gene_id: NC99_13230
symbol: KOH45891.1
gene_biotype: protein_coding
description:
  AraC family transcriptional regulator; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Putative amidotransferase.


ensembl_gene_id: NC99_13240
symbol: KOH45847.1
gene_biotype: protein_coding
description:
  Multidrug transporter AcrB; TIGRFAM: 2A0601: heavy metal efflux pump, CzcA family; Pfam: Outer membrane efflux protein; PRINTS: Acriflavin resistance protein family signature; Pfam: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_13280
symbol: KOH45851.1
gene_biotype: protein_coding
description:
  ATPase; Pfam: haloacid dehalogenase-like hydrolase; PRINTS: Cadmium-transporting ATPase signature; TIGRFAM: ATPase_P-type: HAD ATPase, P-type, family IC; Pfam: E1-E2 ATPase; TIGRFAM: ATPase-IB_hvy: heavy metal translocating P-type ATPase; PRINTS: P-type cation-transporting ATPase superfamily signature.


ensembl_gene_id: NC99_13340
symbol: KOH45857.1
gene_biotype: protein_coding
description:
  PRINTS: P-II protein signature; SMART: Nitrogen regulatory protein P-II; Pfam: Nitrogen regulatory protein P-II.


ensembl_gene_id: NC99_13390
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: NC99_13400
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: NC99_13430
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: NC99_13460
symbol: rnfA
gene_biotype: protein_coding
description:
  Electron transport complex RsxE subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: NC99_13470
symbol: rnfE
gene_biotype: protein_coding
description:
  Electron transporter RsxE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: NC99_13500
symbol: pfp
gene_biotype: protein_coding
description:
  Diphosphate--fructose-6-phosphate 1-phosphotransferase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: NC99_13550
symbol: KOH45804.1
gene_biotype: protein_coding
description:
  H+-transporting two-stor ATPase; TIGRFAM: TIGR00045: glycerate kinase; Pfam: Glycerate kinase family; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: NC99_13590
symbol: KOH45808.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: Nickel-dependent hydrogenase/B-type cytochrome signature; Pfam: Prokaryotic cytochrome b561.


ensembl_gene_id: NC99_13650
symbol: KOH45814.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Crp-like helix-turn-helix domain; SMART: helix_turn_helix, cAMP Regulatory protein; Pfam: Cyclic nucleotide-binding domain.


ensembl_gene_id: NC99_13720
symbol: KOH45821.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-24; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: NC99_13730
symbol: KOH45822.1
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: NC99_13820
symbol: KOH45831.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB; Pfam: haloacid dehalogenase-like hydrolase.


ensembl_gene_id: NC99_13850
symbol: KOH45797.1
gene_biotype: protein_coding
description:
  Tetrahydrofolate synthase; TIGRFAM: folC: bifunctional protein FolC; Pfam: Mur ligase middle domain; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: NC99_13860
symbol: KOH45798.1
gene_biotype: protein_coding
description:
  Pfam: PhoH-like protein; SMART: Large family of predicted nucleotide-binding domains; Pfam: PIN domain.


ensembl_gene_id: NC99_13930
symbol: KOH45761.1
gene_biotype: protein_coding
description:
  TIGRFAM: purB: adenylosuccinate lyase; PRINTS: Fumarate lyase superfamily signature; Pfam: Adenylosuccinate lyase C-terminal; Pfam: Lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: NC99_13940
symbol: KOH45762.1
gene_biotype: protein_coding
description:
  Antibiotic ABC transporter ATP-binding protein; Pfam: ABC transporter transmembrane region; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities.


ensembl_gene_id: NC99_13960
symbol: KOH45764.1
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; Pfam: Glycosyl transferases group 1; Pfam: Starch synthase catalytic domain.


ensembl_gene_id: NC99_14010
symbol: trmH
gene_biotype: protein_coding
description:
  RNA methyltransferase; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: NC99_14040
symbol: KOH45772.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: Tetratricopeptide repeat; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Tetratricopeptide repeats; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature; SMART: His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: NC99_14080
symbol: KOH45776.1
gene_biotype: protein_coding
description:
  Pfam: Hsp90 protein; PRINTS: 90kDa heat shock protein signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: NC99_14100
symbol: KOH45778.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Pfam: AsnC-type helix-turn-helix domain; SMART: helix_turn_helix ASNC type; PRINTS: AsnC bacterial regulatory protein HTH signature; Pfam: AsnC family.


ensembl_gene_id: NC99_14190
symbol: KOH45787.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: TIGR00367: K+-dependent Na+/Ca+ exchanger homolog; Pfam: Sodium/calcium exchanger protein.


ensembl_gene_id: NC99_14210
symbol: KOH45789.1
gene_biotype: protein_coding
description:
  Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase; Pfam: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase.


ensembl_gene_id: NC99_14220
symbol: KOH45790.1
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase; Pfam: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase.


ensembl_gene_id: NC99_14240
symbol: KOH45792.1
gene_biotype: protein_coding
description:
  Translation factor Sua5; TIGRFAM: TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family; Pfam: Telomere recombination; Belongs to the SUA5 family.


ensembl_gene_id: NC99_14300
symbol: KOH45751.1
gene_biotype: protein_coding
description:
  Glycan metabolism protein RagB; Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.


ensembl_gene_id: NC99_14310
symbol: KOH45752.1
gene_biotype: protein_coding
description:
  tonB-linked outer membrane protein; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family.


ensembl_gene_id: NC99_14330
symbol: KOH45754.1
gene_biotype: protein_coding
description:
  L-fucose:H+ symporter permease; Pfam: Major Facilitator Superfamily; TIGRFAM: fucP: L-fucose:H+ symporter permease.


ensembl_gene_id: NC99_14500
symbol: KOH45712.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Response regulator receiver domain; SMART: LytTr DNA-binding domain; Pfam: LytTr DNA-binding domain; SMART: cheY-homologous receiver domain.


ensembl_gene_id: NC99_14510
symbol: KOH45713.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: LytTr DNA-binding domain; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; Pfam: LytTr DNA-binding domain.


ensembl_gene_id: NC99_14520
symbol: lon
gene_biotype: protein_coding
description:
  Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: NC99_14530
symbol: KOH45715.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Pfam: Bacterial transferase hexapeptide (six repeats); Pfam: Sugar nucleotidyl transferase; TIGRFAM: alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase.


ensembl_gene_id: NC99_14540
symbol: rpmE2
gene_biotype: protein_coding
description:
  PRINTS: Ribosomal protein L31 signature; Pfam: Ribosomal protein L31; TIGRFAM: L31: ribosomal protein L31.


ensembl_gene_id: NC99_14600
symbol: KOH45722.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Polysaccharide biosynthesis C-terminal domain; Pfam: Polysaccharide biosynthesis protein.


ensembl_gene_id: NC99_14610
symbol: KOH45723.1
gene_biotype: protein_coding
description:
  TIGRFAM: octaheme_Shew: octaheme c-type cytochrome, tetrathionate reductase family; Pfam: Cytochrome c554 and c-prime; Pfam: Cytochrome c bacterial.


ensembl_gene_id: NC99_14620
symbol: KOH45724.1
gene_biotype: protein_coding
description:
  Pfam: Cytochrome b(N-terminal)/b6/petB; PRINTS: Nickel-dependent hydrogenase/B-type cytochrome signature.


ensembl_gene_id: NC99_14640
symbol: KOH45726.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Rhodanese Homology Domain; Pfam: Rhodanese-like domain; Pfam: Sulphur transport.


ensembl_gene_id: NC99_14730
symbol: KOH45708.1
gene_biotype: protein_coding
description:
  ABC transporter; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.


ensembl_gene_id: NC99_14800
symbol: KOH45704.1
gene_biotype: protein_coding
description:
  Phage tail protein; TIGRFAM: TIGR02241: conserved hypothetical phage tail region protein; Pfam: T4-like virus tail tube protein gp19.


ensembl_gene_id: NC99_14810
symbol: KOH45705.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: TIGR02241: conserved hypothetical phage tail region protein; Pfam: T4-like virus tail tube protein gp19.


ensembl_gene_id: NC99_14850
symbol: KOH45673.1
gene_biotype: protein_coding
description:
  Phosphotransacetylase; Pfam: Phosphate acetyl/butaryl transferase; TIGRFAM: pta: phosphate acetyltransferase.


ensembl_gene_id: NC99_14860
symbol: KOH45674.1
gene_biotype: protein_coding
description:
  Pfam: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Pfam: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.


ensembl_gene_id: NC99_14870
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: NC99_14890
symbol: buk
gene_biotype: protein_coding
description:
  TIGRFAM: butyr_kinase: butyrate kinase; Pfam: Acetokinase family; PRINTS: Acetate kinase family signature; Belongs to the acetokinase family.


ensembl_gene_id: NC99_14910
symbol: KOH45679.1
gene_biotype: protein_coding
description:
  Pfam: Amino acid permease; Pfam: TrkA-C domain; Pfam: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.


ensembl_gene_id: NC99_14940
symbol: KOH45682.1
gene_biotype: protein_coding
description:
  Rhamnulokinase; Pfam: FGGY family of carbohydrate kinases, C-terminal domain; Pfam: FGGY family of carbohydrate kinases, N-terminal domain; TIGRFAM: rhamnulo_kin: rhamnulokinase.


ensembl_gene_id: NC99_14960
symbol: KOH45684.1
gene_biotype: protein_coding
description:
  TIGRFAM: hemN: oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3, MiaB family, Radical SAM; Pfam: Radical SAM superfamily; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: NC99_14970
symbol: KOH45685.1
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.


ensembl_gene_id: NC99_15010
symbol: KOH45689.1
gene_biotype: protein_coding
description:
  Glycine/betaine ABC transporter permease; Pfam: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: NC99_15020
symbol: KOH45690.1
gene_biotype: protein_coding
description:
  Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities; TIGRFAM: proV: glycine betaine/L-proline transport ATP binding subunit; Pfam: CBS domain.


ensembl_gene_id: NC99_15050
symbol: KOH45693.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: 7TM receptor with intracellular HD hydrolase; Pfam: 7TM-HD extracellular; Pfam: HD domain; TIGRFAM: HDIG: uncharacterized domain HDIG; SMART: Metal dependent phosphohydrolases with conserved 'HD' motif.


ensembl_gene_id: NC99_15070
symbol: KOH45695.1
gene_biotype: protein_coding
description:
  PRINTS: NUDIX hydrolase family signature; Pfam: NUDIX domain; Belongs to the Nudix hydrolase family.


ensembl_gene_id: NC99_15100
symbol: KOH45698.1
gene_biotype: protein_coding
description:
  TIGRFAM: sigpep_I_bact: signal peptidase I; PRINTS: Bacterial leader peptidase 1 (S26A) family signature; Pfam: Signal peptidase, peptidase S26; Belongs to the peptidase S26 family.


ensembl_gene_id: NC99_15110
symbol: KOH45699.1
gene_biotype: protein_coding
description:
  Pfam: Dihydrodipicolinate reductase, C-terminus; Pfam: Dihydrodipicolinate reductase, N-terminus; TIGRFAM: dapB: dihydrodipicolinate reductase; Belongs to the DapB family.


ensembl_gene_id: NC99_15300
symbol: KOH45654.1
gene_biotype: protein_coding
description:
  Histidine kinase; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); SMART: cheY-homologous receiver domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: His Kinase A (phosphoacceptor) domain; Pfam: PAS fold; PRINTS: Bacterial sensor protein C-terminal signature; SMART: Histidine kinase-like ATPases; SMART: PAS domain; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: PAS domain; Pfam: Response regulator receiver domain.


ensembl_gene_id: NC99_15340
symbol: KOH45642.1
gene_biotype: protein_coding
description:
  Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: NC99_15360
symbol: KOH45644.1
gene_biotype: protein_coding
description:
  SMART: His Kinase A (phosphoacceptor) domain; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: NC99_15390
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: NC99_15490
symbol: KOH45636.1
gene_biotype: protein_coding
description:
  Regulatory protein; SMART: Helix-turn-helix XRE-family like proteins; Pfam: Helix-turn-helix domain.


ensembl_gene_id: NC99_15530
symbol: KOH45628.1
gene_biotype: protein_coding
description:
  FAD-dependent dehydrogenase; Pfam: FAD dependent oxidoreductase; PRINTS: Adrenodoxin reductase family signature; Pfam: FAD binding domain.


ensembl_gene_id: NC99_15550
symbol: menG
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).


ensembl_gene_id: NC99_15560
symbol: KOH45631.1
gene_biotype: protein_coding
description:
  Pfam: AIR synthase related protein, C-terminal domain; Pfam: AIR synthase related protein, N-terminal domain.


ensembl_gene_id: NC99_15570
symbol: KOH45632.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: Short-chain dehydrogenase/reductase (SDR) superfamily signature; Pfam: short chain dehydrogenase; PRINTS: Glucose/ribitol dehydrogenase family signature; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NC99_15610
symbol: KOH45614.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase; Pfam: UvrD/REP helicase N-terminal domain; Pfam: UvrD-like helicase C-terminal domain.


ensembl_gene_id: NC99_15690
symbol: KOH45622.1
gene_biotype: protein_coding
description:
  Pfam: Elongation factor G, domain IV; Pfam: Elongation factor Tu GTP binding domain; Pfam: Elongation Factor G, domain II; TIGRFAM: small_GTP: small GTP-binding protein domain; Pfam: Elongation factor G C-terminus; SMART: Elongation factor G C-terminus; SMART: Elongation factor G, domain IV; Pfam: Elongation factor Tu domain 2.


ensembl_gene_id: NC99_15700
symbol: KOH45623.1
gene_biotype: protein_coding
description:
  Pfam: ABC transporter transmembrane region; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities; Pfam: Peptidase C39 family.


ensembl_gene_id: NC99_15710
symbol: KOH45607.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein 1A; Pfam: Penicillin binding protein transpeptidase domain; Pfam: Transglycosylase.


ensembl_gene_id: NC99_15720
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: NC99_15770
symbol: KOH45603.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Bac_Flav_CT_G: Bacteroides conjugation system ATPase, TraG family; Pfam: AAA-like domain.


ensembl_gene_id: NC99_15890
symbol: KOH45596.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: AAA-like domain; TIGRFAM: Bac_Flav_CT_G: Bacteroides conjugation system ATPase, TraG family.


ensembl_gene_id: NC99_15990
symbol: KOH45584.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: NC99_16000
symbol: KOH45585.1
gene_biotype: protein_coding
description:
  Cytochrome-c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: NC99_16010
symbol: KOH45586.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: caa3_sub_IV: caa(3)-type oxidase, subunit IV; Pfam: Prokaryotic Cytochrome C oxidase subunit IV.


ensembl_gene_id: NC99_16030
symbol: KOH45588.1
gene_biotype: protein_coding
description:
  PRINTS: Cytochrome c oxidase subunit I signature; Pfam: Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: NC99_16100
symbol: ispE
gene_biotype: protein_coding
description:
  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: NC99_16110
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: NC99_16120
symbol: KOH45574.1
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; SMART: Metallo-beta-lactamase superfamily; Pfam: Metallo-beta-lactamase superfamily.


ensembl_gene_id: NC99_16130
symbol: KOH45570.1
gene_biotype: protein_coding
description:
  Histidine kinase; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); SMART: Histidine kinase-like ATPases; SMART: His Kinase A (phosphoacceptor) domain; TIGRFAM: sensory_box: PAS domain S-box protein; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: GAF domain; SMART: PAS domain; SMART: Domain present in phytochromes and cGMP-specific phosphodiesterases; Pfam: PAS domain.


ensembl_gene_id: NC99_16190
symbol: KOH45556.1
gene_biotype: protein_coding
description:
  tonB-denpendent receptor; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family.


ensembl_gene_id: NC99_16200
symbol: KOH45557.1
gene_biotype: protein_coding
description:
  Carbohydrate-binding protein SusD; Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.


ensembl_gene_id: NC99_16220
symbol: KOH45559.1
gene_biotype: protein_coding
description:
  Alpha-1,2-mannosidase; Pfam: Glycosyl hydrolase family 92; TIGRFAM: aman2_put: putative alpha-1,2-mannosidase.


ensembl_gene_id: NC99_16250
symbol: KOH45562.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: DnaJ domain; SMART: DnaJ molecular chaperone homology domain; Pfam: DnaJ C terminal domain; PRINTS: DnaJ domain signature.


ensembl_gene_id: NC99_16260
symbol: KOH45563.1
gene_biotype: protein_coding
description:
  Heat-shock protein; Pfam: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: NC99_16320
symbol: KOH45554.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: G-rich domain on putative tyrosine kinase; Pfam: AAA domain; TIGRFAM: eps_fam: capsular exopolysaccharide family; Pfam: Chain length determinant protein.


ensembl_gene_id: NC99_16360
symbol: KOH45526.1
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein rprY; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; SMART: Transcriptional regulatory protein, C terminal; Pfam: Transcriptional regulatory protein, C terminal.


ensembl_gene_id: NC99_16370
symbol: KOH45527.1
gene_biotype: protein_coding
description:
  Pfam: His Kinase A (phospho-acceptor) domain; SMART: His Kinase A (phosphoacceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_16380
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: NC99_16390
symbol: KOH45529.1
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase, KASII; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: NC99_16430
symbol: KOH45533.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Uncharacterized BCR, YitT family COG1284; Pfam: Uncharacterized protein conserved in bacteria (DUF2179).


ensembl_gene_id: NC99_16440
symbol: leuS
gene_biotype: protein_coding
description:
  Pfam: Leucyl-tRNA synthetase, Domain 2; Pfam: Anticodon-binding domain of tRNA; Pfam: tRNA synthetases class I (I, L, M and V); TIGRFAM: leuS_bact: leucine--tRNA ligase; PRINTS: Leucyl-tRNA synthetase signature; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: NC99_16460
symbol: groL
gene_biotype: protein_coding
description:
  Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: NC99_16470
symbol: groS
gene_biotype: protein_coding
description:
  Molecular chaperone GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: NC99_16480
symbol: KOH45538.1
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: NC99_16510
symbol: KOH45541.1
gene_biotype: protein_coding
description:
  ATPase AAA; Pfam: Bacterial regulatory protein, Fis family; SMART: ATPases associated with a variety of cellular activities; Pfam: Sigma-54 interaction domain; PRINTS: FIS bacterial regulatory protein HTH signature.


ensembl_gene_id: NC99_16520
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: NC99_16540
symbol: KOH45544.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: NC99_16570
symbol: KOH45547.1
gene_biotype: protein_coding
description:
  Putative regulatory protein; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Helix-turn-helix domain.


ensembl_gene_id: NC99_16580
symbol: KOH45548.1
gene_biotype: protein_coding
description:
  Copper transporter; PRINTS: P-type cation-transporting ATPase superfamily signature; TIGRFAM: ATPase-IB_hvy: heavy metal translocating P-type ATPase; TIGRFAM: ATPase_P-type: HAD ATPase, P-type, family IC; PRINTS: Copper-transporting ATPase signature; Pfam: E1-E2 ATPase; Pfam: Heavy-metal-associated domain; TIGRFAM: ATPase-IB1_Cu: copper-translocating P-type ATPase; Pfam: haloacid dehalogenase-like hydrolase.


ensembl_gene_id: NC99_16590
symbol: KOH45549.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Phage integrase, N-terminal SAM-like domain; Pfam: Phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: NC99_16650
symbol: KOH45520.1
gene_biotype: protein_coding
description:
  Copper-exporting ATPase; Pfam: haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase-IB1_Cu: copper-translocating P-type ATPase; TIGRFAM: ATPase_P-type: HAD ATPase, P-type, family IC; TIGRFAM: ATPase-IB_hvy: heavy metal translocating P-type ATPase; PRINTS: P-type cation-transporting ATPase superfamily signature; Pfam: E1-E2 ATPase.


ensembl_gene_id: NC99_16680
symbol: KOH45523.1
gene_biotype: protein_coding
description:
  Pfam: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II.


ensembl_gene_id: NC99_16760
symbol: KOH45510.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-54 interaction domain; PRINTS: FIS bacterial regulatory protein HTH signature; SMART: cheY-homologous receiver domain; SMART: ATPases associated with a variety of cellular activities; Pfam: Bacterial regulatory protein, Fis family; Pfam: Response regulator receiver domain.


ensembl_gene_id: NC99_16770
symbol: KOH45511.1
gene_biotype: protein_coding
description:
  SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain; SMART: His Kinase A (phosphoacceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: His Kinase A (phospho-acceptor) domain.


ensembl_gene_id: NC99_16850
symbol: KOH45470.1
gene_biotype: protein_coding
description:
  TIGRFAM: pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; Pfam: Domain of unknown function; Pfam: 4Fe-4S dicluster domain; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; SMART: Domain of unknown function; Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: NC99_16960
symbol: rpsR
gene_biotype: protein_coding
description:
  30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: NC99_17000
symbol: KOH45485.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70 region 2; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70, region 4.


ensembl_gene_id: NC99_17020
symbol: KOH45487.1
gene_biotype: protein_coding
description:
  tonB-dependent receptor plug; Pfam: Secretin and TonB N terminus short domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor; Pfam: Domain of unknown function (DUF4480); TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; SMART: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: NC99_17090
symbol: KOH45494.1
gene_biotype: protein_coding
description:
  alpha-L-arabinofuranosidase II precursor; Pfam: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: NC99_17100
symbol: KOH45495.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; SMART: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Pfam: Enolase C-terminal domain-like.


ensembl_gene_id: NC99_17130
symbol: KOH45498.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Bacterial alpha-L-rhamnosidase; Pfam: Alpha-L-rhamnosidase N-terminal domain.


ensembl_gene_id: NC99_17210
symbol: KOH45461.1
gene_biotype: protein_coding
description:
  Pfam: Acyl-CoA dehydrogenase C terminal; Pfam: Acyl-CoA dehydrogenase, N-terminal domain; Pfam: Acyl-CoA dehydrogenase, middle domain; Pfam: Acyl-CoA dehydrogenase, C-terminal domain.


ensembl_gene_id: NC99_17260
symbol: sbcD
gene_biotype: protein_coding
description:
  Hypothetical protein; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: NC99_17440
symbol: KOH45438.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: NC99_17450
symbol: KOH45439.1
gene_biotype: protein_coding
description:
  DNA-dirted RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: NC99_17480
symbol: KOH45442.1
gene_biotype: protein_coding
description:
  Thioredoxin reductase; PRINTS: Pyridine nucleotide disulphide reductase class-II signature; Pfam: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: TRX_reduct: thioredoxin-disulfide reductase; PRINTS: FAD-dependent pyridine nucleotide reductase signature.


ensembl_gene_id: NC99_17520
symbol: KOH45424.1
gene_biotype: protein_coding
description:
  Gamma-glutamyltranspeptidase; TIGRFAM: g_glut_trans: gamma-glutamyltransferase; PRINTS: Gamma-glutamyltranspeptidase signature; Pfam: Gamma-glutamyltranspeptidase.


ensembl_gene_id: NC99_17580
symbol: KOH45430.1
gene_biotype: protein_coding
description:
  Pfam: Uncharacterized conserved protein (DUF2196); TIGRFAM: TIGR03833: conserved hypothetical protein.


ensembl_gene_id: NC99_17670
symbol: KOH45391.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence; Pfam: Protein of unknown function (DUF1237).


ensembl_gene_id: NC99_17740
symbol: KOH45398.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Subtilase family; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain.


ensembl_gene_id: NC99_17760
symbol: surE
gene_biotype: protein_coding
description:
  5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: NC99_17780
symbol: KOH45402.1
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: NC99_17810
symbol: KOH45405.1
gene_biotype: protein_coding
description:
  Pfam: ABC-2 family transporter protein; TIGRFAM: ABC_perm_GldF: gliding motility-associated ABC transporter permease protein GldF; TIGRFAM: GldG: gliding-associated putative ABC transporter substrate-binding component GldG; Pfam: ABC-type uncharacterized transport system.


ensembl_gene_id: NC99_17820
symbol: KOH45406.1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of  [...]


ensembl_gene_id: NC99_17860
symbol: KOH45410.1
gene_biotype: protein_coding
description:
  beta-N-acetylhexosaminidase; Pfam: Glycosyl hydrolase family 20, catalytic domain; PRINTS: Glycosyl hydrolase family 20 signature; Pfam: Glycosyl hydrolase family 20, domain 2.


ensembl_gene_id: NC99_17900
symbol: KOH45414.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: MarC family integral membrane protein; TIGRFAM: TIGR00427: membrane protein, MarC family.


ensembl_gene_id: NC99_17920
symbol: KOH45416.1
gene_biotype: protein_coding
description:
  PRINTS: Transforming protein P21 ras signature; TIGRFAM: GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF; Pfam: 50S ribosome-binding GTPase; TIGRFAM: small_GTP: small GTP-binding protein domain.


ensembl_gene_id: NC99_17940
symbol: KOH45418.1
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiH; Pfam: Biotin and Thiamin Synthesis associated domain; Pfam: Radical SAM superfamily; SMART: Elongator protein 3, MiaB family, Radical SAM; TIGRFAM: rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG; SMART: Biotin and Thiamin Synthesis associated domain.


ensembl_gene_id: NC99_17950
symbol: KOH45381.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Helix-turn-helix domain; SMART: cheY-homologous receiver domain; PRINTS: AraC bacterial regulatory protein HTH signature; Pfam: Response regulator receiver domain.


ensembl_gene_id: NC99_17960
symbol: KOH45382.1
gene_biotype: protein_coding
description:
  SMART: Glycosyl hydrolases family 32; Pfam: Glycosyl hydrolases family 32 N-terminal domain; Pfam: Glycosyl hydrolases family 32 C terminal; Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: NC99_17980
symbol: KOH45384.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl hydrolases family 32 C terminal; Pfam: Glycosyl hydrolases family 32 N-terminal domain; SMART: Glycosyl hydrolases family 32; Pfam: Concanavalin A-like lectin/glucanases superfamily; Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: NC99_18010
symbol: KOH45387.1
gene_biotype: protein_coding
description:
  ragB/SusD domain-containing protein; Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.


ensembl_gene_id: NC99_18020
symbol: KOH45388.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TonB dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family.


ensembl_gene_id: NC99_18050
symbol: KOH45355.1
gene_biotype: protein_coding
description:
  Potassium voltage-gated channel subfamily KQT; Pfam: Ion transport protein; PRINTS: Potassium channel signature.


ensembl_gene_id: NC99_18060
symbol: KOH45356.1
gene_biotype: protein_coding
description:
  Pfam: Subunit ChlI of Mg-chelatase; SMART: ATPases associated with a variety of cellular activities; Pfam: Magnesium chelatase, subunit ChlI; PRINTS: Mini-chromosome maintenance (MCM) protein family signature; TIGRFAM: TIGR00368: Mg chelatase-like protein.


ensembl_gene_id: NC99_18140
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: NC99_18170
symbol: KOH45367.1
gene_biotype: protein_coding
description:
  Pfam: Nucleoside recognition; Pfam: Na+ dependent nucleoside transporter N-terminus; Pfam: Na+ dependent nucleoside transporter C-terminus.


ensembl_gene_id: NC99_18190
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: NC99_18200
symbol: rpmA
gene_biotype: protein_coding
description:
  Pfam: Ribosomal L27 protein; PRINTS: Ribosomal protein L27 signature; TIGRFAM: L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: NC99_18210
symbol: KOH45371.1
gene_biotype: protein_coding
description:
  PRINTS: Seryl-tRNA synthetase signature; Pfam: tRNA synthetase class II core domain (G, H, P, S and T); Pfam: Seryl-tRNA synthetase N-terminal domain; TIGRFAM: serS: serine--tRNA ligase.


ensembl_gene_id: NC99_18250
symbol: sucC
gene_biotype: protein_coding
description:
  malate--CoA ligase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: NC99_18260
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase subsunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: NC99_18310
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: NC99_18360
symbol: KOH45318.1
gene_biotype: protein_coding
description:
  Pfam: TonB-dependent Receptor Plug Domain; Pfam: TonB dependent receptor; Pfam: Domain of unknown function (DUF4480).


ensembl_gene_id: NC99_18390
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: NC99_18410
symbol: KOH45323.1
gene_biotype: protein_coding
description:
  PRINTS: Glutamate-aspartate symporter signature; Pfam: Sodium:dicarboxylate symporter family; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: NC99_18440
symbol: KOH45326.1
gene_biotype: protein_coding
description:
  Fucose permease; Pfam: Major Facilitator Superfamily; TIGRFAM: fucP: L-fucose:H+ symporter permease.


ensembl_gene_id: NC99_18450
symbol: KOH45327.1
gene_biotype: protein_coding
description:
  Pfam: Periplasmic binding protein-like domain; SMART: helix_turn_helix gluconate operon transcriptional repressor; Pfam: Bacterial regulatory proteins, gntR family.


ensembl_gene_id: NC99_18480
symbol: KOH45330.1
gene_biotype: protein_coding
description:
  Arabinan endo-1,5-alpha-L-arabinosidase; Pfam: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: NC99_18500
symbol: KOH45332.1
gene_biotype: protein_coding
description:
  TIGRFAM: molyb_syn: molybdenum cofactor synthesis domain; Pfam: Competence-damaged protein; TIGRFAM: cinA_nterm: competence/damage-inducible protein CinA N-terminal domain; Pfam: Probable molybdopterin binding domain; SMART: Probable molybdopterin binding domain; TIGRFAM: cinA_cterm: competence/damage-inducible protein CinA C-terminal domain.


ensembl_gene_id: NC99_18580
symbol: KOH45340.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Alpha/beta hydrolase family; PRINTS: Prolyl aminopeptidase (S33) family signature.


ensembl_gene_id: NC99_18640
symbol: KOH45346.1
gene_biotype: protein_coding
description:
  Adenylate cyclase; SMART: Tetratricopeptide repeats; Pfam: Helix-turn-helix domain; Pfam: Tetratricopeptide repeat; SMART: helix_turn_helix, arabinose operon control protein.


ensembl_gene_id: NC99_18770
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: NC99_18780
symbol: KOH45270.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase activator complex subunit SufB; TIGRFAM: sufB: FeS assembly protein SufB; Pfam: Uncharacterized protein family (UPF0051).


ensembl_gene_id: NC99_18790
symbol: KOH45271.1
gene_biotype: protein_coding
description:
  Transporter; SMART: ATPases associated with a variety of cellular activities; TIGRFAM: sufC: FeS assembly ATPase SufC; Pfam: ABC transporter.


ensembl_gene_id: NC99_18800
symbol: KOH45272.1
gene_biotype: protein_coding
description:
  ABC transporter permease; TIGRFAM: sufD: FeS assembly protein SufD; Pfam: Uncharacterized protein family (UPF0051).


ensembl_gene_id: NC99_18820
symbol: KOH45274.1
gene_biotype: protein_coding
description:
  TIGRFAM: sufS: cysteine desulfurase, SufS family; Pfam: Aminotransferase class-V; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: NC99_18890
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: NC99_18900
symbol: KOH45282.1
gene_biotype: protein_coding
description:
  ATP/GTP hydrolase; Pfam: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE.


ensembl_gene_id: NC99_18910
symbol: KOH45283.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Alanine dehydrogenase/PNT, C-terminal domain; SMART: Alanine dehydrogenase/PNT, C-terminal domain; Pfam: Alanine dehydrogenase/PNT, N-terminal domain; SMART: Alanine dehydrogenase/PNT, N-terminal domain.


ensembl_gene_id: NC99_18920
symbol: KOH45284.1
gene_biotype: protein_coding
description:
  Pullulanase; SMART: Alpha-amylase domain; Pfam: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: pulA_typeI: pullulanase, type I; Pfam: Alpha amylase, catalytic domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: NC99_18940
symbol: KOH45286.1
gene_biotype: protein_coding
description:
  LytR family transcriptional regulator; Pfam: Response regulator receiver domain; Pfam: LytTr DNA-binding domain; SMART: cheY-homologous receiver domain; SMART: LytTr DNA-binding domain.


ensembl_gene_id: NC99_18980
symbol: glnS
gene_biotype: protein_coding
description:
  Pfam: tRNA synthetases class I (E and Q), anti-codon binding domain; PRINTS: Glutamyl-tRNA synthetase signature; Pfam: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glnS: glutamine--tRNA ligase.


ensembl_gene_id: NC99_18990
symbol: KOH45291.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: NC99_19010
symbol: KOH45293.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TonB dependent receptor; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: Secretin and TonB N terminus short domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; SMART: Secretin and TonB N terminus short domain.


ensembl_gene_id: NC99_19030
symbol: KOH45295.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1.


ensembl_gene_id: NC99_19050
symbol: KOH45297.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: GDSL-like Lipase/Acylhydrolase family; Pfam: Glycosyl Hydrolase Family 88.


ensembl_gene_id: NC99_19100
symbol: KOH45302.1
gene_biotype: protein_coding
description:
  Pfam: Glycosyl hydrolases family 2, TIM barrel domain; PRINTS: Glycosyl hydrolase family 2 signature; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2.


ensembl_gene_id: NC99_19210
symbol: KOH45229.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70, region 4.


ensembl_gene_id: NC99_19250
symbol: KOH45233.1
gene_biotype: protein_coding
description:
  Membrane protein; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB dependent receptor; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: Domain of unknown function (DUF4480).


ensembl_gene_id: NC99_19270
symbol: KOH45235.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Domain of unknown function (DUF4361); Pfam: Domain of unknown function (DUF1735).


ensembl_gene_id: NC99_19280
symbol: KOH45236.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Cation transporter/ATPase, N-terminus; Pfam: haloacid dehalogenase-like hydrolase; Pfam: Cation transporting ATPase, C-terminus; TIGRFAM: ATPase_P-type: HAD ATPase, P-type, family IC; Pfam: Cation transporter/ATPase, N-terminus; Pfam: E1-E2 ATPase; PRINTS: P-type cation-transporting ATPase superfamily signature; PRINTS: H+-transporting ATPase (proton pump) signature.


ensembl_gene_id: NC99_19330
symbol: KOH45241.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl hydrolase family 65 central catalytic domain; Pfam: Glycosyl hydrolase family 65, N-terminal domain; Pfam: Glycosyl hydrolase family 65, C-terminal domain.


ensembl_gene_id: NC99_19350
symbol: KOH45243.1
gene_biotype: protein_coding
description:
  Pfam: Aconitase family (aconitate hydratase); PRINTS: Aconitase family signature; Pfam: Aconitase C-terminal domain; TIGRFAM: acon_putative: putative aconitate hydratase.


ensembl_gene_id: NC99_19360
symbol: KOH45244.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Pfam: Pyridine nucleotide-disulphide oxidoreductase; PRINTS: FAD-dependent pyridine nucleotide reductase signature; PRINTS: Pyridine nucleotide disulphide reductase class-I signature.


ensembl_gene_id: NC99_19370
symbol: KOH45245.1
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: NC99_19380
symbol: KOH45246.1
gene_biotype: protein_coding
description:
  Branched-chain alpha-keto acid dehydrogenase subunit E2; Pfam: Biotin-requiring enzyme; Pfam: e3 binding domain; Pfam: 2-oxoacid dehydrogenases acyltransferase (catalytic domain).


ensembl_gene_id: NC99_19390
symbol: KOH45247.1
gene_biotype: protein_coding
description:
  Dihydrolipoamide dehydrogenase; Pfam: Pyridine nucleotide-disulphide oxidoreductase; PRINTS: Pyridine nucleotide disulphide reductase class-I signature; Pfam: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: lipoamide_DH: dihydrolipoyl dehydrogenase; PRINTS: FAD-dependent pyridine nucleotide reductase signature.


ensembl_gene_id: NC99_19440
symbol: KOH45252.1
gene_biotype: protein_coding
description:
  Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter transmembrane region.


ensembl_gene_id: NC99_19450
symbol: KOH45253.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter; Pfam: ABC transporter transmembrane region.


ensembl_gene_id: NC99_19460
symbol: KOH45254.1
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.


ensembl_gene_id: NC99_19490
symbol: KOH45257.1
gene_biotype: protein_coding
description:
  Beta-galactosidase; Pfam: Glycosyl hydrolases family 2; PRINTS: Glycosyl hydrolase family 2 signature; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: NC99_19600
symbol: KOH45098.1
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein; TIGRFAM: unchar_dom_1: uncharacterized domain 1; Pfam: Thioesterase superfamily.


ensembl_gene_id: NC99_19670
symbol: KOH45105.1
gene_biotype: protein_coding
description:
  Alkylphosphonate utilization operon protein PhnA; Pfam: PhnA protein; SMART: PhnA Zinc-Ribbon; Pfam: PhnA Zinc-Ribbon.


ensembl_gene_id: NC99_19690
symbol: KOH45107.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Leucine rich repeat; SMART: Leucine-rich repeats, typical (most populated) subfamily.


ensembl_gene_id: NC99_19720
symbol: KOH45110.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Phosphoglycerate mutase family; Pfam: Histidine phosphatase superfamily (branch 1); Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: NC99_19750
symbol: KOH45113.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: CobW/HypB/UreG, nucleotide-binding domain; Pfam: Cobalamin synthesis protein cobW C-terminal domain.


ensembl_gene_id: NC99_19770
symbol: tsaD
gene_biotype: protein_coding
description:
  O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: NC99_19840
symbol: KOH45122.1
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: NC99_19860
symbol: KOH45124.1
gene_biotype: protein_coding
description:
  TIGRFAM: yfcE: phosphodiesterase, MJ0936 family; Pfam: Calcineurin-like phosphoesterase superfamily domain.


ensembl_gene_id: NC99_19890
symbol: prmA
gene_biotype: protein_coding
description:
  Hypothetical protein; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: NC99_19900
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: NC99_19920
symbol: KOH45130.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; SMART: PAS domain; PRINTS: Bacterial sensor protein C-terminal signature; SMART: His Kinase A (phosphoacceptor) domain; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: PAS fold; SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: sensory_box: PAS domain S-box protein.


ensembl_gene_id: NC99_19940
symbol: KOH45132.1
gene_biotype: protein_coding
description:
  Beta-galactosidase; Pfam: Glycosyl hydrolases family 2; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; PRINTS: Glycosyl hydrolase family 2 signature; Pfam: Beta galactosidase small chain; Pfam: Glycosyl hydrolases family 2, sugar binding domain.


ensembl_gene_id: NC99_19960
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: NC99_19970
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: NC99_19980
symbol: KOH45136.1
gene_biotype: protein_coding
description:
  Pfam: Translation initiation factor IF-3, C-terminal domain; TIGRFAM: infC: translation initiation factor IF-3; Pfam: Translation initiation factor IF-3, N-terminal domain; Belongs to the IF-3 family.


ensembl_gene_id: NC99_19990
symbol: rpmI
gene_biotype: protein_coding
description:
  TIGRFAM: rpmI_bact: ribosomal protein L35; PRINTS: Ribosomal protein L35 signature; Pfam: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: NC99_20010
symbol: KOH45139.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; Pfam: Oxidoreductase family, C-terminal alpha/beta domain.


ensembl_gene_id: NC99_20020
symbol: KOH45140.1
gene_biotype: protein_coding
description:
  Exonuclease; SMART:; TIGRFAM: dnaq: exonuclease, DNA polymerase III, epsilon subunit family; Pfam: Exonuclease.


ensembl_gene_id: NC99_20030
symbol: KOH45141.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: OMPA domain signature; Pfam: Thrombospondin type 3 repeat; Pfam: OmpA family.


ensembl_gene_id: NC99_20050
symbol: argS
gene_biotype: protein_coding
description:
  arginyl-tRNA synthetase; TIGRFAM: argS: arginine--tRNA ligase; PRINTS: Arginyl-tRNA synthetase signature; Pfam: Arginyl tRNA synthetase N terminal domain; SMART: Arginyl tRNA synthetase N terminal dom; Pfam: tRNA synthetases class I (R); SMART: DALR anticodon binding domain; Pfam: DALR anticodon binding domain.


ensembl_gene_id: NC99_20060
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: NC99_20070
symbol: folD
gene_biotype: protein_coding
description:
  Bifunctional protein FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: NC99_20090
symbol: KOH45147.1
gene_biotype: protein_coding
description:
  DNA-binding protein; SMART: DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria; Pfam: Protein of unknown function (DUF3276).


ensembl_gene_id: NC99_20100
symbol: KOH45148.1
gene_biotype: protein_coding
description:
  Pfam: DnaJ domain; SMART: DnaJ molecular chaperone homology domain; Pfam: Tellurite resistance protein TerB; PRINTS: DnaJ domain signature.


ensembl_gene_id: NC99_20110
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: NC99_20130
symbol: KOH45151.1
gene_biotype: protein_coding
description:
  PRINTS: Bacterial YajC preprotein translocase signature; Pfam: Preprotein translocase subunit; TIGRFAM: yajC: preprotein translocase, YajC subunit.


ensembl_gene_id: NC99_20150
symbol: nusB
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: NC99_20180
symbol: KOH45156.1
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photo-lyase; Pfam: FAD binding domain of DNA photolyase; PRINTS: DNA photolyase signature; Pfam: DNA photolyase.


ensembl_gene_id: NC99_20210
symbol: KOH45159.1
gene_biotype: protein_coding
description:
  PRINTS: Glutathione peroxidase family signature; Pfam: Glutathione peroxidase; Belongs to the glutathione peroxidase family.


ensembl_gene_id: NC99_20220
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: NC99_20250
symbol: KOH45163.1
gene_biotype: protein_coding
description:
  MFS transporter; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: NC99_20280
symbol: KOH45166.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: MarR family; SMART: helix_turn_helix multiple antibiotic resistance protein.


ensembl_gene_id: NC99_20300
symbol: KOH45168.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Pfam: Glutathione peroxidase; PRINTS: Glutathione peroxidase family signature; Belongs to the glutathione peroxidase family.


ensembl_gene_id: NC99_20390
symbol: rnz
gene_biotype: protein_coding
description:
  Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.


ensembl_gene_id: NC99_20400
symbol: KOH45178.1
gene_biotype: protein_coding
description:
  TIGRFAM: ant_ant_sig: anti-anti-sigma factor; Pfam: STAS domain; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: NC99_20410
symbol: KOH45179.1
gene_biotype: protein_coding
description:
  PRINTS: Ribosomal protein S1 signature; SMART: Ribosomal protein S1-like RNA-binding domain; Pfam: S1 RNA binding domain.


ensembl_gene_id: NC99_20430
symbol: KOH45181.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: NC99_20450
symbol: KOH45183.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: NC99_20460
symbol: KOH45184.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Pfam: Phosphoglucomutase/phosphomannomutase, C-terminal domain; PRINTS: Phosphoglucomutase/phosphomannomutase family signature; Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.


ensembl_gene_id: NC99_20550
symbol: KOH45193.1
gene_biotype: protein_coding
description:
  Pfam: Peptidase M16 inactive domain; Pfam: Insulinase (Peptidase family M16); Belongs to the peptidase M16 family.


ensembl_gene_id: NC99_20580
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: NC99_20600
symbol: recF
gene_biotype: protein_coding
description:
  dNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: NC99_20620
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: NC99_20670
symbol: KOH45205.1
gene_biotype: protein_coding
description:
  RNA-binding protein; Pfam: S1 RNA binding domain; SMART: Likely ribonuclease with RNase H fold; Pfam: Tex-like protein N-terminal domain; SMART: Ribosomal protein S1-like RNA-binding domain; Pfam: Helix-hairpin-helix motif.


ensembl_gene_id: NC99_20700
symbol: KOH45208.1
gene_biotype: protein_coding
description:
  Alanine glycine permease; TIGRFAM: agcS: amino acid carrier protein; PRINTS: Sodium/alanine symporter signature; Pfam: Sodium:alanine symporter family.


ensembl_gene_id: NC99_20720
symbol: mutS2
gene_biotype: protein_coding
description:
  Methionine ABC transporter substrate-binding protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: NC99_20730
symbol: KOH45211.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: NC99_20770
symbol: KOH45215.1
gene_biotype: protein_coding
description:
  Oxidoreductase domain-containing protein; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.


ensembl_gene_id: NC99_20870
symbol: KOH45225.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: SLBB domain; Pfam: 4Fe-4S dicluster domain; Pfam: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; SMART: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Pfam: Thioredoxin-like [2Fe-2S] ferredoxin; Pfam: Respiratory-chain NADH dehydrogenase 51 Kd subunit.


ensembl_gene_id: NC99_20890
symbol: KOH45227.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Pfam: 2Fe-2S iron-sulfur cluster binding domain; Pfam: NAD(P)-binding Rossmann-like domain; PRINTS: Adrenodoxin reductase family signature.


ensembl_gene_id: NC99_20930
symbol: KOH44968.1
gene_biotype: protein_coding
description:
  TIGRFAM: acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain; TIGRFAM: acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain; Pfam: B12 binding domain; Pfam: Methylmalonyl-CoA mutase.


ensembl_gene_id: NC99_20960
symbol: KOH44971.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: short chain dehydrogenase; PRINTS: Short-chain dehydrogenase/reductase (SDR) superfamily signature; PRINTS: Glucose/ribitol dehydrogenase family signature; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NC99_21000
symbol: KOH44975.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Metallo-beta-lactamase superfamily; Pfam: Metallo-beta-lactamase superfamily.


ensembl_gene_id: NC99_21030
symbol: KOH44978.1
gene_biotype: protein_coding
description:
  Peptidoglycan synthetase; Pfam: Mur ligase middle domain; Pfam: Mur ligase family, glutamate ligase domain; Pfam: Mur ligase family, catalytic domain.


ensembl_gene_id: NC99_21110
symbol: KOH44986.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Concanavalin A-like lectin/glucanases superfamily; SMART: LamG-like jellyroll fold domain.


ensembl_gene_id: NC99_21180
symbol: KOH44993.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Thioesterase superfamily; TIGRFAM: unchar_dom_1: uncharacterized domain 1.


ensembl_gene_id: NC99_21190
symbol: KOH44994.1
gene_biotype: protein_coding
description:
  Isochorismate synthase; Pfam: chorismate binding enzyme; TIGRFAM: isochor_syn: isochorismate synthase.


ensembl_gene_id: NC99_21200
symbol: menD
gene_biotype: protein_coding
description:
  2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.


ensembl_gene_id: NC99_21210
symbol: menB
gene_biotype: protein_coding
description:
  Dihydroxynaphthoic acid synthetase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).


ensembl_gene_id: NC99_21220
symbol: menA
gene_biotype: protein_coding
description:
  Hypothetical protein; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.


ensembl_gene_id: NC99_21230
symbol: KOH44998.1
gene_biotype: protein_coding
description:
  Chloromuconate cycloisomerase; Pfam: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; SMART: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Pfam: Enolase C-terminal domain-like; TIGRFAM: menC_gamma/gm+: o-succinylbenzoate synthase.


ensembl_gene_id: NC99_21270
symbol: KOH45002.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: BlaR1 peptidase M56; Pfam: Gram-negative bacterial TonB protein C-terminal; Pfam: Domain of unknown function (DUF4480).


ensembl_gene_id: NC99_21300
symbol: KOH45005.1
gene_biotype: protein_coding
description:
  Cation/multidrug efflux pump; Pfam: AcrB/AcrD/AcrF family; PRINTS: Acriflavin resistance protein family signature; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_21310
symbol: KOH45006.1
gene_biotype: protein_coding
description:
  Membrane protein; TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Pfam: HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: NC99_21320
symbol: KOH45007.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70 region 2; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; SMART: helix_turn_helix, Lux Regulon; Pfam: Sigma-70, region 4.


ensembl_gene_id: NC99_21340
symbol: KOH45009.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Secretin and TonB N terminus short domain; Pfam: Secretin and TonB N terminus short domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor; Pfam: Domain of unknown function (DUF4480); Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.


ensembl_gene_id: NC99_21390
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: NC99_21430
symbol: KOH45018.1
gene_biotype: protein_coding
description:
  Dihydroorotase; TIGRFAM: pyrC_multi: dihydroorotase, multifunctional complex type; Pfam: Amidohydrolase.


ensembl_gene_id: NC99_21460
symbol: KOH45021.1
gene_biotype: protein_coding
description:
  Pfam: Malic enzyme, NAD binding domain; SMART: Malic enzyme, NAD binding domain; Pfam: Malic enzyme, N-terminal domain; Pfam: Phosphate acetyl/butaryl transferase.


ensembl_gene_id: NC99_21570
symbol: KOH45032.1
gene_biotype: protein_coding
description:
  SMART: SERine Proteinase INhibitors; Pfam: Serpin (serine protease inhibitor); Pfam: Domain of unknown function (DUF4480); Belongs to the serpin family.


ensembl_gene_id: NC99_21670
symbol: KOH45042.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Outer membrane protein beta-barrel family; Pfam: Carboxypeptidase regulatory-like domain.


ensembl_gene_id: NC99_21760
symbol: KOH45051.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: tonB_Cterm: TonB family C-terminal domain.


ensembl_gene_id: NC99_21770
symbol: KOH45052.1
gene_biotype: protein_coding
description:
  Cell envelope biogenesis protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: NC99_21780
symbol: hflX
gene_biotype: protein_coding
description:
  gTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: NC99_21790
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: NC99_21820
symbol: KOH45057.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP binding component; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.


ensembl_gene_id: NC99_21830
symbol: KOH45058.1
gene_biotype: protein_coding
description:
  Pfam: Glycosyl hydrolases family 2, TIM barrel domain; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2.


ensembl_gene_id: NC99_21860
symbol: KOH45061.1
gene_biotype: protein_coding
description:
  Dehydrogenase; SMART: Metal dependent phosphohydrolases with conserved 'HD' motif; Pfam: HD domain; TIGRFAM: dGTP_triPase: putative dGTPase; Pfam: Phosphohydrolase-associated domain.


ensembl_gene_id: NC99_21920
symbol: KOH45067.1
gene_biotype: protein_coding
description:
  Pfam: Amino acid kinase family; TIGRFAM: asp_kinases: aspartate kinase; Belongs to the aspartokinase family.


ensembl_gene_id: NC99_21930
symbol: KOH45068.1
gene_biotype: protein_coding
description:
  Membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: NC99_21940
symbol: KOH45069.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: TIGR00726: uncharacterized protein, YfiH family; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: NC99_21970
symbol: KOH45072.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Crp-like helix-turn-helix domain; Pfam: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-monophosphate binding domain; SMART: helix_turn_helix, cAMP Regulatory protein.


ensembl_gene_id: NC99_22020
symbol: KOH45077.1
gene_biotype: protein_coding
description:
  Nitric oxide reductase large subunit-like protein; Pfam: Cytochrome C and Quinol oxidase polypeptide I.


ensembl_gene_id: NC99_22070
symbol: KOH45082.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: redox_disulf_2: redox-active disulfide protein 2; Pfam: Thioredoxin domain.


ensembl_gene_id: NC99_22100
symbol: purD
gene_biotype: protein_coding
description:
  TIGRFAM: purD: phosphoribosylamine--glycine ligase; Pfam: Phosphoribosylglycinamide synthetase, N domain; Pfam: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Pfam: Phosphoribosylglycinamide synthetase, C domain; Belongs to the GARS family.


ensembl_gene_id: NC99_22130
symbol: KOH45088.1
gene_biotype: protein_coding
description:
  Peptide ABC transporter ATP-binding protein; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities.


ensembl_gene_id: NC99_22150
symbol: KOH45090.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Pfam: MacB-like periplasmic core domain; Pfam: FtsX-like permease family.


ensembl_gene_id: NC99_22180
symbol: KOH44906.1
gene_biotype: protein_coding
description:
  Potassium transporter peripheral membrane component; Pfam: TrkA-C domain; PRINTS: TrkA potassium uptake protein signature; Pfam: TrkA-N domain.


ensembl_gene_id: NC99_22190
symbol: KOH44907.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Domain of unknown function (DUF4131); Pfam: Competence protein; TIGRFAM: ComEC_N-term: ComEC/Rec2-related protein.


ensembl_gene_id: NC99_22200
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: NC99_22210
symbol: KOH44909.1
gene_biotype: protein_coding
description:
  Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: NC99_22240
symbol: KOH44912.1
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: NC99_22260
symbol: KOH44914.1
gene_biotype: protein_coding
description:
  Pyruvate phosphate dikinase; Pfam: PEP-utilising enzyme, TIM barrel domain; Pfam: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyru_phos_dikin: pyruvate, phosphate dikinase; Pfam: PEP-utilising enzyme, mobile domain; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: NC99_22280
symbol: clpB
gene_biotype: protein_coding
description:
  Molecular chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: NC99_22310
symbol: gcvT
gene_biotype: protein_coding
description:
  Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine.


ensembl_gene_id: NC99_22340
symbol: KOH44922.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: NC99_22350
symbol: KOH44923.1
gene_biotype: protein_coding
description:
  Alpha-glucuronidase; Pfam: Glycosyl hydrolase family 67 middle domain; Pfam: Glycosyl hydrolase family 67 C-terminus.


ensembl_gene_id: NC99_22360
symbol: KOH44924.1
gene_biotype: protein_coding
description:
  Chromophore lyase; PRINTS: Glycosyl hydrolase family 8 signature; Pfam: Glycosyl hydrolases family 43; Pfam: Carbohydrate binding module (family 6); Pfam: Glycosyl hydrolases family 8.


ensembl_gene_id: NC99_22370
symbol: KOH44925.1
gene_biotype: protein_coding
description:
  Xylan 1,4-beta-xylosidase; Pfam: Cellulase (glycosyl hydrolase family 5); Pfam: Glycosyl hydrolases family 43.


ensembl_gene_id: NC99_22390
symbol: KOH44927.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Two component regulator propeller; SMART: Histidine kinase-like ATPases; SMART: His Kinase A (phosphoacceptor) domain; Pfam: Helix-turn-helix domain; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Y_Y_Y domain.


ensembl_gene_id: NC99_22420
symbol: KOH44930.1
gene_biotype: protein_coding
description:
  tonB-linked outer membrane protein; Pfam: TonB dependent receptor; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Domain of unknown function (DUF4480).


ensembl_gene_id: NC99_22440
symbol: KOH44932.1
gene_biotype: protein_coding
description:
  tonB-linked outer membrane protein; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family.


ensembl_gene_id: NC99_22450
symbol: KOH44933.1
gene_biotype: protein_coding
description:
  Glycan metabolism protein RagB; Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.


ensembl_gene_id: NC99_22470
symbol: KOH44935.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl hydrolase family 10; SMART: Glycosyl hydrolase family 10; Pfam: Carbohydrate binding domain.


ensembl_gene_id: NC99_22540
symbol: KOH44942.1
gene_biotype: protein_coding
description:
  Sialate O-acetylesterase; Pfam: Domain of unknown function (DUF303); Pfam: Glycosyl hydrolases family 2, sugar binding domain.


ensembl_gene_id: NC99_22550
symbol: KOH44943.1
gene_biotype: protein_coding
description:
  Transporter; Pfam: MFS/sugar transport protein; TIGRFAM: gph: sugar (Glycoside-Pentoside-Hexuronide) transporter.


ensembl_gene_id: NC99_22560
symbol: KOH44944.1
gene_biotype: protein_coding
description:
  Endo-1,4-beta-xylanase; PRINTS: Glycosyl hydrolase family 10 signature; Pfam: Glycosyl hydrolase family 10; SMART: Glycosyl hydrolase family 10.


ensembl_gene_id: NC99_22570
symbol: KOH44945.1
gene_biotype: protein_coding
description:
  alpha-N-arabinofuranosidase; Pfam: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: NC99_22600
symbol: KOH44948.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70, region 4.


ensembl_gene_id: NC99_22620
symbol: KOH44950.1
gene_biotype: protein_coding
description:
  Collagen-binding protein; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB-dependent Receptor Plug Domain; Pfam: TonB dependent receptor; SMART: Secretin and TonB N terminus short domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Domain of unknown function (DUF4480); Pfam: Secretin and TonB N terminus short domain.


ensembl_gene_id: NC99_22640
symbol: KOH44952.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial regulatory proteins, lacI family; Pfam: Periplasmic binding protein-like domain; SMART: helix_turn _helix lactose operon repressor.


ensembl_gene_id: NC99_22690
symbol: KOH44957.1
gene_biotype: protein_coding
description:
  Alpha-glucosidase; Pfam: Glycosyl-hydrolase 97 C-terminal, oligomerisation; Pfam: Glycoside hydrolase 97; Pfam: Glycosyl-hydrolase 97 N-terminal.


ensembl_gene_id: NC99_22700
symbol: KOH44958.1
gene_biotype: protein_coding
description:
  Pfam: Glycosyl hydrolase family 3 C-terminal domain; Pfam: Glycosyl hydrolase family 3 N terminal domain; Pfam: PA14 domain; Pfam: Fibronectin type III-like domain; PRINTS: Glycosyl hydrolase family 3 signature; SMART:.


ensembl_gene_id: NC99_22760
symbol: KOH44964.1
gene_biotype: protein_coding
description:
  Carbohydrate-binding protein; Pfam: Carbohydrate binding module (family 6); SMART: Cellulose Binding Domain Type IV; Pfam: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: NC99_22830
symbol: KOH44851.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Restriction endonuclease; Pfam: ATPase family associated with various cellular activities (AAA).


ensembl_gene_id: NC99_22860
symbol: KOH44854.1
gene_biotype: protein_coding
description:
  Oxidoreductase; PRINTS: Glucose/ribitol dehydrogenase family signature; Pfam: short chain dehydrogenase.


ensembl_gene_id: NC99_22870
symbol: KOH44855.1
gene_biotype: protein_coding
description:
  AraC family transcriptional regulator; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein.


ensembl_gene_id: NC99_22900
symbol: KOH44858.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycoside hydrolase 97; Pfam: Glycosyl-hydrolase 97 N-terminal; Pfam: Glycosyl-hydrolase 97 C-terminal, oligomerisation.


ensembl_gene_id: NC99_22910
symbol: KOH44859.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70, region 4.


ensembl_gene_id: NC99_22930
symbol: KOH44861.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: NC99_22960
symbol: KOH44864.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl-hydrolase 97 N-terminal; Pfam: Glycoside hydrolase 97; Pfam: Glycosyl-hydrolase 97 C-terminal, oligomerisation.


ensembl_gene_id: NC99_22970
symbol: KOH44865.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: Carbohydrate binding module (family 6).


ensembl_gene_id: NC99_22990
symbol: KOH44867.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Tetratricopeptide repeat; Pfam: TPR repeat; SMART: Tetratricopeptide repeats.


ensembl_gene_id: NC99_23000
symbol: KOH44868.1
gene_biotype: protein_coding
description:
  Sugar-proton symporter; PRINTS: Sugar transporter signature; TIGRFAM: SP: MFS transporter, sugar porter (SP) family; Pfam: Sugar (and other) transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: NC99_23010
symbol: KOH44869.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helix-turn-helix domain; Pfam: AraC-like ligand binding domain; PRINTS: AraC bacterial regulatory protein HTH signature; SMART: helix_turn_helix, arabinose operon control protein.


ensembl_gene_id: NC99_23080
symbol: KOH44876.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_23110
symbol: KOH44879.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Putative collagen-binding domain of a collagenase; Pfam: Protein of unknown function (DUF4038).


ensembl_gene_id: NC99_23160
symbol: KOH44884.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl hydrolase family 92; TIGRFAM: aman2_put: putative alpha-1,2-mannosidase.


ensembl_gene_id: NC99_23380
symbol: KOH44791.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: Helix-turn-helix domain; SMART: His Kinase A (phosphoacceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Two component regulator propeller; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: cheY-homologous receiver domain; SMART: Histidine kinase-like ATPases; Pfam: His Kinase A (phospho-acceptor) domain; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Response regulator receiver domain; Pfam: Y_Y_Y domain.


ensembl_gene_id: NC99_23410
symbol: KOH44794.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Nitrite and sulphite reductase 4Fe-4S domain; PRINTS: Sirohaem Fe-binding site signature; Pfam: Nitrite/Sulfite reductase ferredoxin-like half domain; Pfam: Sulfurtransferase TusA.


ensembl_gene_id: NC99_23420
symbol: KOH44795.1
gene_biotype: protein_coding
description:
  Mov34/mpn/pad-1 family protein; Pfam: Prokaryotic homologs of the JAB domain; SMART: JAB/MPN domain.


ensembl_gene_id: NC99_23470
symbol: KOH44800.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: V-type ATPase 116kDa subunit family; Belongs to the V-ATPase 116 kDa subunit family.


ensembl_gene_id: NC99_23490
symbol: KOH44802.1
gene_biotype: protein_coding
description:
  Pfam: ATP synthase alpha/beta family, beta-barrel domain; Pfam: ATP synthase alpha/beta family, nucleotide-binding domain.


ensembl_gene_id: NC99_23530
symbol: KOH44806.1
gene_biotype: protein_coding
description:
  Membrane protease subunit, stomatin/prohibitin; PRINTS: Prohibitin signature; Pfam: SPFH domain / Band 7 family.


ensembl_gene_id: NC99_23660
symbol: KOH44819.1
gene_biotype: protein_coding
description:
  Metal transporter; Pfam: HlyD family secretion protein; Pfam: Protein of unknown function (DUF3347); TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: NC99_23700
symbol: KOH44823.1
gene_biotype: protein_coding
description:
  AraC family transcriptional reguator; SMART: helix_turn_helix, arabinose operon control protein; PRINTS: AraC bacterial regulatory protein HTH signature; Pfam: Helix-turn-helix domain.


ensembl_gene_id: NC99_23720
symbol: KOH44825.1
gene_biotype: protein_coding
description:
  ATPase; TIGRFAM: ATPase-IB1_Cu: copper-translocating P-type ATPase; Pfam: E1-E2 ATPase; Pfam: haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase_P-type: HAD ATPase, P-type, family IC; PRINTS: P-type cation-transporting ATPase superfamily signature; PRINTS: Copper-transporting ATPase signature; TIGRFAM: ATPase-IB_hvy: heavy metal translocating P-type ATPase.


ensembl_gene_id: NC99_23760
symbol: KOH44829.1
gene_biotype: protein_coding
description:
  AraC family transcriptional reguator; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Helix-turn-helix domain.


ensembl_gene_id: NC99_23810
symbol: nuoA
gene_biotype: protein_coding
description:
  Hypothetical protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: NC99_23820
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: NC99_23830
symbol: nuoC
gene_biotype: protein_coding
description:
  Hypothetical protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: NC99_23840
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: NC99_23850
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: NC99_23860
symbol: KOH44839.1
gene_biotype: protein_coding
description:
  NADPH-quinone oxidoreductase; Pfam: 4Fe-4S dicluster domain; TIGRFAM: NuoI: NADH-quinone oxidoreductase, chain I.


ensembl_gene_id: NC99_23870
symbol: KOH44840.1
gene_biotype: protein_coding
description:
  Hypothetical protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: NC99_23890
symbol: KOH44842.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit L; Pfam: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L; PRINTS: NADH-ubiquinone oxidoreductase chain 5 signature; Pfam: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus.


ensembl_gene_id: NC99_23900
symbol: KOH44843.1
gene_biotype: protein_coding
description:
  Oxidoreductase; Pfam: NADH-Ubiquinone/plastoquinone (complex I), various chains; PRINTS: NADH-ubiquinone oxidoreductase subunit 4 signature; TIGRFAM: NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M.


ensembl_gene_id: NC99_23910
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: NC99_23930
symbol: KOH44733.1
gene_biotype: protein_coding
description:
  Integrase; Pfam: Phage integrase SAM-like domain; Pfam: Phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: NC99_23940
symbol: queG
gene_biotype: protein_coding
description:
  Epoxyqueuosine reductase; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: NC99_23980
symbol: KOH44738.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Cyclic nucleotide-binding domain; Pfam: Crp-like helix-turn-helix domain.


ensembl_gene_id: NC99_24000
symbol: KOH44740.1
gene_biotype: protein_coding
description:
  Pfam: Thioredoxin; TIGRFAM: thioredoxin: thioredoxin; PRINTS: Thioredoxin family signature; Belongs to the thioredoxin family.


ensembl_gene_id: NC99_24010
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: NC99_24020
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription elongation factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: NC99_24030
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: NC99_24040
symbol: KOH44744.1
gene_biotype: protein_coding
description:
  Phosphohydrolase; Pfam: HD domain; SMART: Metal dependent phosphohydrolases with conserved 'HD' motif.


ensembl_gene_id: NC99_24050
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: NC99_24060
symbol: fabZ
gene_biotype: protein_coding
description:
  hydroxymyristoyl-ACP dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.


ensembl_gene_id: NC99_24070
symbol: KOH44747.1
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: NC99_24100
symbol: KOH44750.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-32; Pfam: Domain of unknown function (DUF4212); TIGRFAM: Na_symport_sm: putative solute:sodium symporter small subunit.


ensembl_gene_id: NC99_24110
symbol: KOH44751.1
gene_biotype: protein_coding
description:
  TIGRFAM: Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily; Pfam: Sodium:solute symporter family; TIGRFAM: sss: transporter, solute:sodium symporter (SSS) family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: NC99_24120
symbol: KOH44752.1
gene_biotype: protein_coding
description:
  SMART: Cold shock protein domain; Pfam: 'Cold-shock' DNA-binding domain; PRINTS: Cold shock protein signature.


ensembl_gene_id: NC99_24130
symbol: KOH44753.1
gene_biotype: protein_coding
description:
  Pfam: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; SMART: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Pfam: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; PRINTS: Glutamate/leucine/phenylalanine/valine dehydrogenase signature; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: NC99_24150
symbol: KOH44755.1
gene_biotype: protein_coding
description:
  1-alkyl-2-acetylglycerophosphocholine esterase; PRINTS: Asparaginase/glutaminase family signature; Pfam: Asparaginase; SMART:; TIGRFAM: asnASE_I: L-asparaginase, type I.


ensembl_gene_id: NC99_24210
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: NC99_24220
symbol: tadA
gene_biotype: protein_coding
description:
  CMP deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: NC99_24230
symbol: nqrF
gene_biotype: protein_coding
description:
  Na(+)-translocating NADH-quinone reductase subunit F; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.


ensembl_gene_id: NC99_24240
symbol: nqrE
gene_biotype: protein_coding
description:
  Na(+)-translocating NADH-quinone reductase subunit E; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family.


ensembl_gene_id: NC99_24250
symbol: nqrD
gene_biotype: protein_coding
description:
  Na(+)-translocating NADH-quinone reductase subunit D; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family.


ensembl_gene_id: NC99_24260
symbol: nqrC
gene_biotype: protein_coding
description:
  Na(+)-translocating NADH-quinone reductase subunit C; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.


ensembl_gene_id: NC99_24270
symbol: nqrB
gene_biotype: protein_coding
description:
  Na(+)-translocating NADH-quinone reductase subunit B; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.


ensembl_gene_id: NC99_24280
symbol: nqrA
gene_biotype: protein_coding
description:
  Na(+)-translocating NADH-quinone reductase subunit A; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.


ensembl_gene_id: NC99_24300
symbol: KOH44770.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: PAS fold; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: PAS domain; SMART: His Kinase A (phosphoacceptor) domain; Pfam: PAS domain; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: Histidine kinase-like ATPases; Pfam: His Kinase A (phospho-acceptor) domain.


ensembl_gene_id: NC99_24310
symbol: KOH44771.1
gene_biotype: protein_coding
description:
  TIGRFAM: D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase; Pfam: Aldehyde dehydrogenase family.


ensembl_gene_id: NC99_24410
symbol: recR
gene_biotype: protein_coding
description:
  Recombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: NC99_24420
symbol: KOH44782.1
gene_biotype: protein_coding
description:
  Pfam: His Kinase A (phospho-acceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: PAS domain; TIGRFAM: sensory_box: PAS domain S-box protein; Pfam: PAS fold; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); SMART: PAS domain; SMART: His Kinase A (phosphoacceptor) domain; Pfam: Response regulator receiver domain; SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: cheY-homologous receiver domain.


ensembl_gene_id: NC99_24430
symbol: KOH44783.1
gene_biotype: protein_coding
description:
  Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Pfam: Two component regulator propeller; Pfam: Response regulator receiver domain; Pfam: Y_Y_Y domain; SMART: helix_turn_helix, arabinose operon control protein; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: His Kinase A (phospho-acceptor) domain; SMART: His Kinase A (phosphoacceptor) domain; Pfam: Helix-turn-helix domain; SMART: cheY-homologous receiver domain; SMART: Histidine kinase-like ATPases.


ensembl_gene_id: NC99_24450
symbol: KOH44785.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).


ensembl_gene_id: NC99_24480
symbol: KOH44788.1
gene_biotype: protein_coding
description:
  Oxidoreductase fad/nad(p)-binding domain protein; PRINTS: Flavoprotein pyridine nucleotide cytochrome reductase signature; PRINTS: Phenol hydroxylase reductase family signature; Pfam: Oxidoreductase NAD-binding domain; Pfam: Oxidoreductase FAD-binding domain.


ensembl_gene_id: NC99_24490
symbol: KOH44789.1
gene_biotype: protein_coding
description:
  2-methylthioadenine synthetase; Pfam: Uncharacterized protein family UPF0004; TIGRFAM: miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB; Pfam: TRAM domain; Pfam: Radical SAM superfamily; TIGRFAM: TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family; SMART: Elongator protein 3, MiaB family, Radical SAM; overlaps another CDS with the same product name.


ensembl_gene_id: NC99_24500
symbol: KOH44790.1
gene_biotype: protein_coding
description:
  2-methylthioadenine synthetase; Pfam: Radical SAM superfamily; TIGRFAM: TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family; TIGRFAM: MiaB-like-C: MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3, MiaB family, Radical SAM; Pfam: Uncharacterized protein family UPF0004; overlaps another CDS with the same product name.


ensembl_gene_id: NC99_24530
symbol: KOH44714.1
gene_biotype: protein_coding
description:
  beta-L-N-acetylhexosaminidase; Pfam: Glycosyl hydrolase family 20, domain 2; PRINTS: Glycosyl hydrolase family 20 signature; Pfam: Glycosyl hydrolase family 20, catalytic domain.


ensembl_gene_id: NC99_24540
symbol: KOH44715.1
gene_biotype: protein_coding
description:
  Sialate O-acetylesterase; Pfam: GDSL-like Lipase/Acylhydrolase family; Pfam: Domain of unknown function (DUF303).


ensembl_gene_id: NC99_24560
symbol: KOH44717.1
gene_biotype: protein_coding
description:
  PRINTS: Dihydrodipicolinate synthase signature; Pfam: Dihydrodipicolinate synthetase family; Belongs to the DapA family.


ensembl_gene_id: NC99_24590
symbol: KOH44720.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: sss: transporter, solute:sodium symporter (SSS) family; Pfam: Sodium:solute symporter family.


ensembl_gene_id: NC99_24720
symbol: KOH44687.1
gene_biotype: protein_coding
description:
  Restriction endonuclease subunit R; Pfam: EcoEI R protein C-terminal; Pfam: Helicase conserved C-terminal domain; Pfam: Type III restriction enzyme, res subunit; SMART: DEAD-like helicases superfamily.


ensembl_gene_id: NC99_24790
symbol: KOH44694.1
gene_biotype: protein_coding
description:
  Multidrug transporter AcrB; PRINTS: Acriflavin resistance protein family signature; Pfam: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_24820
symbol: KOH44697.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: NC99_24850
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: NC99_24860
symbol: KOH44701.1
gene_biotype: protein_coding
description:
  Cytochrome C4; SMART: Chorismate mutase type II; Pfam: Chorismate mutase type II; Pfam: DAHP synthetase I family.


ensembl_gene_id: NC99_24890
symbol: KOH44704.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl hydrolases family 32 N-terminal domain; SMART: Glycosyl hydrolases family 32; Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: NC99_24900
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: NC99_24950
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: NC99_24990
symbol: KOH44661.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Carboxypeptidase regulatory-like domain; Pfam: BlaR1 peptidase M56; TIGRFAM: tonB_Cterm: TonB family C-terminal domain; Pfam: Gram-negative bacterial TonB protein C-terminal.


ensembl_gene_id: NC99_25030
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: NC99_25040
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: NC99_25050
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: NC99_25060
symbol: KOH44668.1
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Pfam: LeuA allosteric (dimerisation) domain; Pfam: HMGL-like; SMART: LeuA allosteric (dimerisation) domain; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: NC99_25070
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: NC99_25080
symbol: KOH44670.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: NC99_25090
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: NC99_25100
symbol: KOH44672.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Subtilase family; PRINTS: Subtilisin serine protease family (S8) signature.


ensembl_gene_id: NC99_25120
symbol: KOH44674.1
gene_biotype: protein_coding
description:
  Transcriptional antiterminator; Pfam: Glycosyltransferase family 20; TIGRFAM: T6PP: trehalose-phosphatase; TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB; Pfam: Trehalose-phosphatase.


ensembl_gene_id: NC99_25150
symbol: KOH44677.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Ferritin-like domain; PRINTS: Helicobacter neutrophil-activating protein A family signature; Belongs to the Dps family.


ensembl_gene_id: NC99_25160
symbol: KOH44678.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Bacterial regulatory helix-turn-helix protein, lysR family; Pfam: LysR substrate binding domain; PRINTS: LysR bacterial regulatory protein HTH signature; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: NC99_25230
symbol: KOH44685.1
gene_biotype: protein_coding
description:
  Histidine kinase; SMART: PAS domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain; Pfam: PAS fold; Pfam: HAMP domain; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature; SMART: His Kinase A (phosphoacceptor) domain; Pfam: His Kinase A (phospho-acceptor) domain.


ensembl_gene_id: NC99_25240
symbol: KOH44686.1
gene_biotype: protein_coding
description:
  Chemotaxis protein CheY; PRINTS: FIS bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory protein, Fis family; SMART: ATPases associated with a variety of cellular activities; Pfam: Response regulator receiver domain; Pfam: Sigma-54 interaction domain.


ensembl_gene_id: NC99_25250
symbol: rnfD
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.


ensembl_gene_id: NC99_25260
symbol: rnfC
gene_biotype: protein_coding
description:
  Electron transporter RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.


ensembl_gene_id: NC99_25270
symbol: rnfB
gene_biotype: protein_coding
description:
  Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: NC99_25290
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: NC99_25310
symbol: KOH44654.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: PduO_Nterm: ATP:cob(I)alamin adenosyltransferase; Pfam: Cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: NC99_25390
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: NC99_25530
symbol: KOH44645.1
gene_biotype: protein_coding
description:
  Pfam: MgsA AAA+ ATPase C terminal; Pfam: ATPase family associated with various cellular activities (AAA); SMART: ATPases associated with a variety of cellular activities.


ensembl_gene_id: NC99_25830
symbol: KOH44598.1
gene_biotype: protein_coding
description:
  TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB dependent receptor; SMART: Secretin and TonB N terminus short domain; Pfam: Domain of unknown function (DUF4480); Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family.


ensembl_gene_id: NC99_25850
symbol: KOH44600.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1.


ensembl_gene_id: NC99_25860
symbol: KOH44601.1
gene_biotype: protein_coding
description:
  SMART: DEAD-like helicases superfamily; Pfam: Type I restriction enzyme R protein N terminus (HSDR_N); Pfam: Type III restriction enzyme, res subunit.


ensembl_gene_id: NC99_25890
symbol: KOH44604.1
gene_biotype: protein_coding
description:
  Restriction endonuclease subunit M; PRINTS: N12 class N6 adenine-specific DNA methyltransferase signature; Pfam: HsdM N-terminal domain; Pfam: N-6 DNA Methylase.


ensembl_gene_id: NC99_25970
symbol: KOH44612.1
gene_biotype: protein_coding
description:
  Tat (twin-arginine translocation) pathway signal sequence; Pfam: Domain of unknown function (DUF4434).


ensembl_gene_id: NC99_25990
symbol: KOH44614.1
gene_biotype: protein_coding
description:
  Pfam: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: NC99_26050
symbol: KOH44620.1
gene_biotype: protein_coding
description:
  tonB-linked outer membrane protein; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_26140
symbol: KOH44535.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.


ensembl_gene_id: NC99_26160
symbol: KOH44537.1
gene_biotype: protein_coding
description:
  uroporphyrinogen-III C-methyltransferase; Pfam: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase.


ensembl_gene_id: NC99_26190
symbol: cysI
gene_biotype: protein_coding
description:
  Sulfite reductase; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: NC99_26200
symbol: KOH44541.1
gene_biotype: protein_coding
description:
  Sulfite reductase; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component.


ensembl_gene_id: NC99_26210
symbol: KOH44542.1
gene_biotype: protein_coding
description:
  Porphyrin biosynthesis protein; TIGRFAM: cysG_Nterm: siroheme synthase, N-terminal domain; Pfam: Putative NAD(P)-binding.


ensembl_gene_id: NC99_26310
symbol: KOH44552.1
gene_biotype: protein_coding
description:
  Multidrug transporter AcrB; Pfam: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_26330
symbol: KOH44554.1
gene_biotype: protein_coding
description:
  Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); Pfam: PAS fold; SMART: His Kinase A (phosphoacceptor) domain; Pfam: His Kinase A (phospho-acceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: Histidine kinase-like ATPases; SMART: PAS domain; Pfam: PAS domain.


ensembl_gene_id: NC99_26340
symbol: dinB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: NC99_26370
symbol: KOH44558.1
gene_biotype: protein_coding
description:
  PRINTS: Short-chain dehydrogenase/reductase (SDR) superfamily signature; Pfam: short chain dehydrogenase; PRINTS: Glucose/ribitol dehydrogenase family signature; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NC99_26380
symbol: KOH44559.1
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphate synthase; Pfam: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: NC99_26470
symbol: KOH44568.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: DNA-binding domain; Pfam: Domain of unknown function (DUF4469) with IG-like fold.


ensembl_gene_id: NC99_26500
symbol: KOH44420.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: MutL C terminal dimerisation domain; SMART: MutL C terminal dimerisation domain.


ensembl_gene_id: NC99_26560
symbol: rlmH
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: NC99_26590
symbol: KOH44429.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: yihY_not_rbn: YihY family inner membrane protein; Pfam: Virulence factor BrkB.


ensembl_gene_id: NC99_26600
symbol: KOH44430.1
gene_biotype: protein_coding
description:
  DUF124 domain-containing protein; Pfam: Mitochondrial biogenesis AIM24; TIGRFAM: TIGR00266: TIGR00266 family protein.


ensembl_gene_id: NC99_26620
symbol: der
gene_biotype: protein_coding
description:
  GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: NC99_26630
symbol: era
gene_biotype: protein_coding
description:
  GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: NC99_26670
symbol: KOH44437.1
gene_biotype: protein_coding
description:
  tyrosine-tRNA ligase; TIGRFAM: TIGR00093: pseudouridine synthase; Pfam: S4 domain; SMART: S4 RNA-binding domain; Pfam: RNA pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: NC99_26690
symbol: dapL
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate.


ensembl_gene_id: NC99_26760
symbol: KOH44446.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1.


ensembl_gene_id: NC99_26800
symbol: KOH44450.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Carboxypeptidase regulatory-like domain; Pfam: Domain of unknown function (DUF4382).


ensembl_gene_id: NC99_26870
symbol: KOH44457.1
gene_biotype: protein_coding
description:
  SMART: Histidine kinase-like ATPases; Pfam: HAMP domain; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain; SMART: His Kinase A (phosphoacceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_26880
symbol: KOH44458.1
gene_biotype: protein_coding
description:
  Fis family transcriptional regulator; Pfam: Response regulator receiver domain; Pfam: Sigma-54 interaction domain; SMART: ATPases associated with a variety of cellular activities; SMART: cheY-homologous receiver domain; Pfam: Bacterial regulatory protein, Fis family.


ensembl_gene_id: NC99_26950
symbol: ribBA
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: NC99_27040
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: NC99_27070
symbol: efp
gene_biotype: protein_coding
description:
  Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: NC99_27090
symbol: KOH44479.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ; Pfam: Glycoprotease family.


ensembl_gene_id: NC99_27100
symbol: KOH44480.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; SMART: LytTr DNA-binding domain; Pfam: LytTr DNA-binding domain.


ensembl_gene_id: NC99_27130
symbol: KOH44483.1
gene_biotype: protein_coding
description:
  Pfam: C-terminal domain of CHU protein family; TIGRFAM: Bac_Flav_CTERM: gliding motility-associated C-terminal domain; SMART: Repeats in polycystic kidney disease 1 (PKD1) and other proteins.


ensembl_gene_id: NC99_27270
symbol: KOH44497.1
gene_biotype: protein_coding
description:
  TIGRFAM: more_P_ylases: alpha-glucan phosphorylases; Pfam: Carbohydrate phosphorylase; Pfam: Protein of unknown function (DUF3417).


ensembl_gene_id: NC99_27290
symbol: KOH44499.1
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; Pfam: Glycosyl transferases group 1; Pfam: Glycosyl transferase 4-like domain.


ensembl_gene_id: NC99_27300
symbol: KOH44500.1
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme; Pfam: Amylo-alpha-1,6-glucosidase; Pfam: Glycogen debranching enzyme N terminal.


ensembl_gene_id: NC99_27320
symbol: KOH44502.1
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching protein; SMART: Alpha-amylase domain; Pfam: Alpha amylase, C-terminal all-beta domain; Pfam: Alpha amylase, catalytic domain; Pfam: Carbohydrate-binding module 48 (Isoamylase N-terminal domain).


ensembl_gene_id: NC99_27330
symbol: KOH44503.1
gene_biotype: protein_coding
description:
  Beta-glucosidase; Pfam: Glycosyl hydrolase family 3 N terminal domain; PRINTS: Glycosyl hydrolase family 3 signature; Pfam: Glycosyl hydrolase family 3 C-terminal domain.


ensembl_gene_id: NC99_27340
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/hydroperoxidase HPI(I); Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: NC99_27360
symbol: KOH44506.1
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Pfam: Pyridine nucleotide-disulphide oxidoreductase; PRINTS: FAD-dependent pyridine nucleotide reductase signature; PRINTS: Pyridine nucleotide disulphide reductase class-I signature; TIGRFAM: lipoamide_DH: dihydrolipoyl dehydrogenase; Pfam: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.


ensembl_gene_id: NC99_27390
symbol: KOH44509.1
gene_biotype: protein_coding
description:
  Protein kinase; SMART: ATPases associated with a variety of cellular activities; Pfam: ArgK protein; TIGRFAM: lao: LAO/AO transport system ATPase.


ensembl_gene_id: NC99_27410
symbol: KOH44511.1
gene_biotype: protein_coding
description:
  SMART: Histidine kinase-like ATPases; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: His Kinase A (phosphoacceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_27420
symbol: KOH44512.1
gene_biotype: protein_coding
description:
  Pfam: Response regulator receiver domain; SMART: Transcriptional regulatory protein, C terminal; SMART: cheY-homologous receiver domain; Pfam: Transcriptional regulatory protein, C terminal.


ensembl_gene_id: NC99_27450
symbol: KOH44515.1
gene_biotype: protein_coding
description:
  Pfam: TPR repeat; PRINTS: AraC bacterial regulatory protein HTH signature; Pfam: Helix-turn-helix domain; SMART: Tetratricopeptide repeats; Pfam: Tetratricopeptide repeat; SMART: helix_turn_helix, arabinose operon control protein.


ensembl_gene_id: NC99_27520
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: NC99_27550
symbol: KOH44525.1
gene_biotype: protein_coding
description:
  Histidine kinase; PRINTS: Bacterial sensor protein C-terminal signature; SMART: His Kinase A (phosphoacceptor) domain; Pfam: Two component regulator propeller; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases; Pfam: Y_Y_Y domain; Pfam: His Kinase A (phospho-acceptor) domain.


ensembl_gene_id: NC99_27610
symbol: KOH44531.1
gene_biotype: protein_coding
description:
  Pfam: Acyl-CoA dehydrogenase, N-terminal domain; Pfam: Acyl-CoA dehydrogenase, C-terminal domain; Pfam: Acyl-CoA dehydrogenase, middle domain.


ensembl_gene_id: NC99_27620
symbol: KOH44532.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Carbamoyl-phosphate synthase L chain, N-terminal domain; Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain; Pfam: Biotin-requiring enzyme; SMART: Biotin carboxylase C-terminal domain; Pfam: Biotin carboxylase C-terminal domain.


ensembl_gene_id: NC99_27640
symbol: KOH44407.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding/permease protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.


ensembl_gene_id: NC99_27750
symbol: dacA
gene_biotype: protein_coding
description:
  Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.


ensembl_gene_id: NC99_27780
symbol: KOH44399.1
gene_biotype: protein_coding
description:
  Beta-galactosidase; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: NC99_27810
symbol: KOH44402.1
gene_biotype: protein_coding
description:
  Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family.


ensembl_gene_id: NC99_27830
symbol: KOH44404.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Fasciclin domain; SMART: Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.


ensembl_gene_id: NC99_27860
symbol: cysS
gene_biotype: protein_coding
description:
  TIGRFAM: cysS: cysteine--tRNA ligase; Pfam: DALR domain; PRINTS: Cysteinyl-tRNA synthetase signature; Pfam: tRNA synthetases class I (C) catalytic domain; SMART:; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: NC99_27870
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: NC99_27900
symbol: KOH44343.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Rhodanese Homology Domain; Pfam: Rhodanese-like domain; TIGRFAM: tRNA_sel_U_synt: tRNA 2-selenouridine synthase.


ensembl_gene_id: NC99_27940
symbol: KOH44347.1
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: NC99_27960
symbol: KOH44349.1
gene_biotype: protein_coding
description:
  Pfam: Methylenetetrahydrofolate reductase; TIGRFAM: fadh2: 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: NC99_27980
symbol: KOH44351.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: cheY-homologous receiver domain; SMART: LytTr DNA-binding domain; Pfam: Response regulator receiver domain; Pfam: LytTr DNA-binding domain.


ensembl_gene_id: NC99_27990
symbol: KOH44352.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Pfam: Histidine kinase.


ensembl_gene_id: NC99_28000
symbol: KOH44353.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein.


ensembl_gene_id: NC99_28040
symbol: KOH44357.1
gene_biotype: protein_coding
description:
  Histidine kinase; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: His Kinase A (phosphoacceptor) domain; Pfam: His Kinase A (phospho-acceptor) domain; SMART: Histidine kinase-like ATPases.


ensembl_gene_id: NC99_28050
symbol: KOH44358.1
gene_biotype: protein_coding
description:
  PhoP family transcriptional regulator; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain; SMART: Transcriptional regulatory protein, C terminal; Pfam: Transcriptional regulatory protein, C terminal.


ensembl_gene_id: NC99_28080
symbol: KOH44361.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma54 factor; Pfam: Sigma-54, DNA binding domain; TIGRFAM: rpoN_sigma: RNA polymerase sigma-54 factor; Pfam: Sigma-54 factor, core binding domain; Pfam: Sigma-54 factor, Activator interacting domain (AID); PRINTS: Sigma-54 factor signature.


ensembl_gene_id: NC99_28090
symbol: asnS
gene_biotype: protein_coding
description:
  asparaginyl-tRNA synthetase; Pfam: OB-fold nucleic acid binding domain; Pfam: tRNA synthetases class II (D, K and N); PRINTS: Aspartyl-tRNA synthetase signature; TIGRFAM: asnS: asparagine--tRNA ligase.


ensembl_gene_id: NC99_28170
symbol: KOH44370.1
gene_biotype: protein_coding
description:
  Ribonuclease P; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor; Pfam: Domain of unknown function (DUF4480); SMART: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Secretin and TonB N terminus short domain.


ensembl_gene_id: NC99_28260
symbol: KOH44379.1
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; PRINTS: Glucose/ribitol dehydrogenase family signature; PRINTS: Short-chain dehydrogenase/reductase (SDR) superfamily signature; Pfam: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NC99_28270
symbol: KOH44380.1
gene_biotype: protein_coding
description:
  D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Pfam: Dihydroneopterin aldolase; TIGRFAM: folB_dom: FolB domain; SMART: Dihydroneopterin aldolase.


ensembl_gene_id: NC99_28280
symbol: KOH44381.1
gene_biotype: protein_coding
description:
  Pfam: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.


ensembl_gene_id: NC99_28460
symbol: ilvD
gene_biotype: protein_coding
description:
  Pfam: Dehydratase family; TIGRFAM: ilvD: dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: NC99_28480
symbol: KOH44301.1
gene_biotype: protein_coding
description:
  Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.


ensembl_gene_id: NC99_28500
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: NC99_28540
symbol: KOH44307.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: von Willebrand factor type A domain; SMART: von Willebrand factor (vWF) type A domain; Pfam: Aerotolerance regulator N-terminal.


ensembl_gene_id: NC99_28550
symbol: KOH44308.1
gene_biotype: protein_coding
description:
  Membrane protein; Pfam: von Willebrand factor type A domain; Pfam: Aerotolerance regulator N-terminal; SMART: von Willebrand factor (vWF) type A domain.


ensembl_gene_id: NC99_28580
symbol: KOH44311.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Bacterial SH3 domain; SMART: Tetratricopeptide repeats; Pfam: TPR repeat.


ensembl_gene_id: NC99_28690
symbol: KOH44322.1
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: NC99_28720
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: NC99_28770
symbol: KOH44330.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: CBS domain; Pfam: Voltage gated chloride channel; PRINTS: Chloride channel signature.


ensembl_gene_id: NC99_28780
symbol: KOH44331.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: CBS domain; PRINTS: Chloride channel signature; Pfam: Voltage gated chloride channel.


ensembl_gene_id: NC99_28800
symbol: KOH44333.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: NAD dependent epimerase/dehydratase family; Pfam: Domain of unknown function (DUF1731); TIGRFAM: yfcH: TIGR01777 family protein.


ensembl_gene_id: NC99_28810
symbol: pckA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.


ensembl_gene_id: NC99_28820
symbol: xerC
gene_biotype: protein_coding
description:
  Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: NC99_28830
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: NC99_28840
symbol: KOH44337.1
gene_biotype: protein_coding
description:
  TIGRFAM: pyruv_kin: pyruvate kinase; Pfam: Pyruvate kinase, alpha/beta domain; PRINTS: Pyruvate kinase family signature; Pfam: Pyruvate kinase, barrel domain; Belongs to the pyruvate kinase family.


ensembl_gene_id: NC99_28890
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: NC99_28920
symbol: KOH44274.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-24; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: NC99_28930
symbol: rsmG
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: NC99_28970
symbol: KOH44279.1
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: NC99_28980
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: NC99_29000
symbol: KOH44282.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: NC99_29040
symbol: KOH44286.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: NC99_29060
symbol: KOH44288.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA/RNA precursor pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.


ensembl_gene_id: NC99_29110
symbol: KOH44293.1
gene_biotype: protein_coding
description:
  PRINTS: Alkaline phosphatase signature; SMART: Alkaline phosphatase homologues; Pfam: Alkaline phosphatase; Belongs to the alkaline phosphatase family.


ensembl_gene_id: NC99_29130
symbol: KOH44295.1
gene_biotype: protein_coding
description:
  protein-N-phosphohistidine-sugar phosphotransferase; Pfam: Acyltransferase; SMART: Phosphate acyltransferases.


ensembl_gene_id: NC99_29140
symbol: mntP
gene_biotype: protein_coding
description:
  Hypothetical protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.


ensembl_gene_id: NC99_29150
symbol: KOH44297.1
gene_biotype: protein_coding
description:
  Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases; SMART: PAS domain; TIGRFAM: sensory_box: PAS domain S-box protein; Pfam: PAS fold; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_29220
symbol: KOH44251.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial regulatory proteins, gntR family; Pfam: Periplasmic binding protein-like domain; SMART: helix_turn_helix gluconate operon transcriptional repressor.


ensembl_gene_id: NC99_29240
symbol: KOH44253.1
gene_biotype: protein_coding
description:
  TIGRFAM: galT_1: galactose-1-phosphate uridylyltransferase; Pfam: Galactose-1-phosphate uridyl transferase, C-terminal domain; Pfam: Galactose-1-phosphate uridyl transferase, N-terminal domain.


ensembl_gene_id: NC99_29250
symbol: KOH44254.1
gene_biotype: protein_coding
description:
  Pfam: Galactokinase galactose-binding signature; PRINTS: Mevalonate kinase family signature; PRINTS: Galactokinase signature; Pfam: GHMP kinases N terminal domain.


ensembl_gene_id: NC99_29300
symbol: KOH44259.1
gene_biotype: protein_coding
description:
  Pfam: STAS domain; Pfam: Sulfate transporter family; Pfam: Sulfate transporter N-terminal domain with GLY motif.


ensembl_gene_id: NC99_29360
symbol: KOH44265.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein; Pfam: AraC-like ligand binding domain.


ensembl_gene_id: NC99_29390
symbol: KOH44218.1
gene_biotype: protein_coding
description:
  Pfam: Lipocalin-like domain; PRINTS: Bacterial lipocalin signature; Belongs to the calycin superfamily. Lipocalin family.


ensembl_gene_id: NC99_29430
symbol: KOH44222.1
gene_biotype: protein_coding
description:
  Pfam: Threonine synthase N terminus; Pfam: Pyridoxal-phosphate dependent enzyme; TIGRFAM: thrC: threonine synthase.


ensembl_gene_id: NC99_29440
symbol: KOH44223.1
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase; Pfam: Metalloenzyme superfamily; Pfam: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: apgM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form; TIGRFAM: hyp_Hser_kinase: proposed homoserine kinase.


ensembl_gene_id: NC99_29450
symbol: KOH44224.1
gene_biotype: protein_coding
description:
  Aspartokinase; Pfam: Homoserine dehydrogenase; Pfam: ACT domain; TIGRFAM: asp_kinases: aspartate kinase; Pfam: Amino acid kinase family; Pfam: Homoserine dehydrogenase, NAD binding domain.


ensembl_gene_id: NC99_29460
symbol: recA
gene_biotype: protein_coding
description:
  Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: NC99_29680
symbol: KOH44215.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: 4Fe-4S dicluster domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: NC99_29710
symbol: KOH44165.1
gene_biotype: protein_coding
description:
  Membrane protein; Pfam: TonB dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.


ensembl_gene_id: NC99_29720
symbol: KOH44166.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial regulatory proteins, gntR family; Pfam: FCD domain; SMART: helix_turn_helix gluconate operon transcriptional repressor; SMART:; PRINTS: GntR bacterial regulatory protein HTH signature.


ensembl_gene_id: NC99_29740
symbol: KOH44168.1
gene_biotype: protein_coding
description:
  Beta-galactosidase; SMART: Beta galactosidase small chain; Pfam: Glycosyl hydrolases family 2; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; PRINTS: Glycosyl hydrolase family 2 signature; Pfam: Beta galactosidase small chain.


ensembl_gene_id: NC99_29750
symbol: KOH44169.1
gene_biotype: protein_coding
description:
  Beta-hexosaminidase; Pfam: PA14 domain; SMART:; Pfam: Glycosyl hydrolase family 20, catalytic domain; Pfam: Chitobiase/beta-hexosaminidase C-terminal domain; PRINTS: Glycosyl hydrolase family 20 signature; Pfam: Glycosyl hydrolase family 20, domain 2.


ensembl_gene_id: NC99_29780
symbol: KOH44172.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Cation efflux family; TIGRFAM: CDF: cation diffusion facilitator family transporter.


ensembl_gene_id: NC99_29840
symbol: KOH44178.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: Trypsin-like peptidase domain.


ensembl_gene_id: NC99_29910
symbol: KOH44185.1
gene_biotype: protein_coding
description:
  Pfam: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase.


ensembl_gene_id: NC99_29920
symbol: metAA
gene_biotype: protein_coding
description:
  Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.


ensembl_gene_id: NC99_29940
symbol: KOH44188.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: OmpA family; Pfam: WD40-like Beta Propeller Repeat; Pfam: Tetratricopeptide repeat; PRINTS: OMPA domain signature; SMART: Tetratricopeptide repeats.


ensembl_gene_id: NC99_29960
symbol: KOH44190.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain.


ensembl_gene_id: NC99_29980
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: NC99_30000
symbol: araB
gene_biotype: protein_coding
description:
  Ribulokinase; Pfam: FGGY family of carbohydrate kinases, N-terminal domain; TIGRFAM: L-ribulokinase: L-ribulokinase; Pfam: FGGY family of carbohydrate kinases, C-terminal domain.


ensembl_gene_id: NC99_30010
symbol: KOH44195.1
gene_biotype: protein_coding
description:
  L-ribulose-5-phosphate 4-epimerase; SMART: Class II Aldolase and Adducin N-terminal domain; Pfam: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: araD: L-ribulose-5-phosphate 4-epimerase.


ensembl_gene_id: NC99_30020
symbol: KOH44196.1
gene_biotype: protein_coding
description:
  TIGRFAM: sss: transporter, solute:sodium symporter (SSS) family; Pfam: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: NC99_30160
symbol: KOH44210.1
gene_biotype: protein_coding
description:
  Hemolysin; Pfam: Acyltransferase; SMART: Phosphate acyltransferases; Pfam: Acetyltransferase (GNAT) domain.


ensembl_gene_id: NC99_30170
symbol: KOH44211.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Radical SAM N-terminal; SMART: Elongator protein 3, MiaB family, Radical SAM; Pfam: Radical SAM superfamily; TIGRFAM: SAM_YgiQ: uncharacterized radical SAM protein YgiQ.


ensembl_gene_id: NC99_30190
symbol: KOH44026.1
gene_biotype: protein_coding
description:
  Hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).


ensembl_gene_id: NC99_30240
symbol: KOH44031.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helicase conserved C-terminal domain; SMART: helicase superfamily c-terminal domain; TIGRFAM: cas3_core: CRISPR-associated helicase Cas3; SMART: DEAD-like helicases superfamily; Pfam: DEAD/DEAH box helicase; TIGRFAM: cas3_HD: CRISPR-associated endonuclease Cas3-HD.


ensembl_gene_id: NC99_30260
symbol: KOH44033.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: cas_MJ0381: CRISPR-associated autoregulator DevR family; Pfam: CRISPR-associated negative auto-regulator DevR/Csa2.


ensembl_gene_id: NC99_30320
symbol: KOH44039.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: NC99_30340
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: NC99_30570
symbol: KOH44064.1
gene_biotype: protein_coding
description:
  Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; PRINTS: Glycosyl hydrolase family 2 signature; Pfam: Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: NC99_30580
symbol: KOH44065.1
gene_biotype: protein_coding
description:
  Pfam: Alpha-L-arabinofuranosidase C-terminus; SMART: Alpha-L-arabinofuranosidase C-terminus; Pfam: Carbohydrate binding domain.


ensembl_gene_id: NC99_30640
symbol: KOH44071.1
gene_biotype: protein_coding
description:
  TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; SMART: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Secretin and TonB N terminus short domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_30680
symbol: KOH44075.1
gene_biotype: protein_coding
description:
  Histidine kinase; SMART: PAS domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: PAS fold; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Pfam: PAS domain; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: Histidine kinase-like ATPases; Pfam: His Kinase A (phospho-acceptor) domain; SMART: His Kinase A (phosphoacceptor) domain; Pfam: 5TMR of 5TMR-LYT; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain).


ensembl_gene_id: NC99_30720
symbol: KOH44079.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Xylose isomerase-like TIM barrel; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.


ensembl_gene_id: NC99_30800
symbol: KOH44087.1
gene_biotype: protein_coding
description:
  Phosphate regulon transcriptional regulatory protein PhoB (SphR); Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; SMART: Transcriptional regulatory protein, C terminal; Pfam: Transcriptional regulatory protein, C terminal.


ensembl_gene_id: NC99_30810
symbol: KOH44088.1
gene_biotype: protein_coding
description:
  SMART: Histidine kinase-like ATPases; SMART: His Kinase A (phosphoacceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: NC99_30840
symbol: KOH44091.1
gene_biotype: protein_coding
description:
  Exopolygalacturonase; Pfam: Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.


ensembl_gene_id: NC99_30910
symbol: KOH44098.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: oxido_grp_1: luciferase family oxidoreductase, group 1; Pfam: Luciferase-like monooxygenase.


ensembl_gene_id: NC99_30970
symbol: KOH44104.1
gene_biotype: protein_coding
description:
  Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_31010
symbol: KOH44108.1
gene_biotype: protein_coding
description:
  Copper transporter; Pfam: AcrB/AcrD/AcrF family; PRINTS: Acriflavin resistance protein family signature; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_31060
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: NC99_31090
symbol: KOH44116.1
gene_biotype: protein_coding
description:
  Long-chain fatty acid--CoA ligase; Pfam: AMP-binding enzyme C-terminal domain; Pfam: AMP-binding enzyme.


ensembl_gene_id: NC99_31190
symbol: glyQS
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetease; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: NC99_31220
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: NC99_31240
symbol: KOH44131.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: hisJ_fam: histidinol phosphate phosphatase, HisJ family; SMART: DNA polymerase alpha chain like domain; Pfam: PHP domain; Belongs to the PHP hydrolase family. HisK subfamily.


ensembl_gene_id: NC99_31250
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: NC99_31260
symbol: KOH44133.1
gene_biotype: protein_coding
description:
  Pfam: His Kinase A (phospho-acceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases.


ensembl_gene_id: NC99_31290
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: NC99_31340
symbol: atpB
gene_biotype: protein_coding
description:
  Hypothetical protein; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: NC99_31350
symbol: atpE
gene_biotype: protein_coding
description:
  H+-transporting two-stor ATPase; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: NC99_31360
symbol: atpF
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: NC99_31370
symbol: atpH
gene_biotype: protein_coding
description:
  Hypothetical protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: NC99_31380
symbol: atpA
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: NC99_31390
symbol: atpG
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: NC99_31420
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: NC99_31430
symbol: rpsB
gene_biotype: protein_coding
description:
  PRINTS: Ribosomal protein S2 signature; TIGRFAM: rpsB_bact: ribosomal protein S2; Pfam: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: NC99_31450
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: NC99_31470
symbol: KOH44154.1
gene_biotype: protein_coding
description:
  Pfam: Peptidase family S41; SMART: Domain present in PSD-95, Dlg, and ZO-1/2; TIGRFAM: prc: C-terminal processing peptidase; Pfam: PDZ domain; SMART: tail specific protease; Belongs to the peptidase S41A family.


ensembl_gene_id: NC99_31500
symbol: KOH44157.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: Prokaryotic integration host factor signature; Pfam: Bacterial DNA-binding protein.


ensembl_gene_id: NC99_31530
symbol: KOH44160.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter ATP-binding protein; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities; Belongs to the ABC transporter superfamily.


ensembl_gene_id: NC99_31540
symbol: KOH44161.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter permease; Pfam: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: NC99_31550
symbol: KOH44162.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: NC99_31600
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: NC99_31630
symbol: KOH44012.1
gene_biotype: protein_coding
description:
  Glycoside hydrolase; SMART: Lysozyme subfamily 2; Pfam: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Pfam: LysM domain; SMART: Lysin motif.


ensembl_gene_id: NC99_31650
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: NC99_31660
symbol: KOH44015.1
gene_biotype: protein_coding
description:
  RNA-dirted RNA polymerase; Pfam: PIF1-like helicase; Pfam: Helix-turn-helix domain; Pfam: HRDC domain; SMART: ATPases associated with a variety of cellular activities; Pfam: Helicase.


ensembl_gene_id: NC99_31680
symbol: cutC
gene_biotype: protein_coding
description:
  Copper homeostasis protein CutC; Participates in the control of copper homeostasis. Belongs to the CutC family.


ensembl_gene_id: NC99_31690
symbol: KOH44018.1
gene_biotype: protein_coding
description:
  FAD-dependent oxidoreductase; Pfam: HI0933-like protein; TIGRFAM: TIGR00275: flavoprotein, HI0933 family; PRINTS: FAD-dependent pyridine nucleotide reductase signature; PRINTS: Pyridine nucleotide disulphide reductase class-I signature.


ensembl_gene_id: NC99_31720
symbol: KOH44021.1
gene_biotype: protein_coding
description:
  Peptidase S9; Pfam: Dipeptidyl peptidase IV (DPP IV) N-terminal region; Pfam: Prolyl oligopeptidase family; Pfam: WD40-like Beta Propeller Repeat.


ensembl_gene_id: NC99_31730
symbol: KOH44022.1
gene_biotype: protein_coding
description:
  Histidine kinase; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases; SMART: Domain present in phytochromes and cGMP-specific phosphodiesterases; SMART: His Kinase A (phosphoacceptor) domain; TIGRFAM: sensory_box: PAS domain S-box protein; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: GAF domain; Pfam: PAS fold; SMART: PAS domain; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_31750
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: NC99_31760
symbol: KOH44025.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: 4'-phosphopantetheinyl transferase superfamily; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: NC99_31810
symbol: KOH43965.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: NapC/NirT cytochrome c family, N-terminal region; Pfam: Sulfatase-modifying factor enzyme 1.


ensembl_gene_id: NC99_31900
symbol: KOH43974.1
gene_biotype: protein_coding
description:
  Mannose-6-phosphate isomerase; Pfam: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: NC99_31940
symbol: KOH43978.1
gene_biotype: protein_coding
description:
  Acylneuraminate cytidylyltransferase; TIGRFAM: YrbI-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Pfam: Cytidylyltransferase; Pfam: haloacid dehalogenase-like hydrolase.


ensembl_gene_id: NC99_31980
symbol: KOH43982.1
gene_biotype: protein_coding
description:
  Cell division protein FtsX; Pfam: FtsX-like permease family; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: NC99_32000
symbol: uppP
gene_biotype: protein_coding
description:
  UDP-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: NC99_32010
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: NC99_32020
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine tRNA ribosyltransferase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: NC99_32060
symbol: KOH43990.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: surface_SprA: cell surface protein SprA; Pfam: Motility related/secretion protein.


ensembl_gene_id: NC99_32070
symbol: ruvA
gene_biotype: protein_coding
description:
  Hypothetical protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: NC99_32080
symbol: KOH43992.1
gene_biotype: protein_coding
description:
  TIGRFAM: pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA; Pfam: Pyridoxal phosphate biosynthetic protein PdxA; Belongs to the PdxA family.


ensembl_gene_id: NC99_32130
symbol: KOH43997.1
gene_biotype: protein_coding
description:
  Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: His Kinase A (phosphoacceptor) domain; SMART: PAS domain; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: PAS domain; Pfam: PAS fold; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); TIGRFAM: sensory_box: PAS domain S-box protein; PRINTS: Bacterial sensor protein C-terminal signature; SMART: Histidine kinase-like ATPases.


ensembl_gene_id: NC99_32140
symbol: rlmN
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: NC99_32160
symbol: KOH44000.1
gene_biotype: protein_coding
description:
  Membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: NC99_32190
symbol: KOH44003.1
gene_biotype: protein_coding
description:
  Zinc ABC transporter ATP-binding protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.


ensembl_gene_id: NC99_32240
symbol: KOH43933.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Pfam: PKD domain.


ensembl_gene_id: NC99_32260
symbol: KOH43935.1
gene_biotype: protein_coding
description:
  Collagen-binding protein; Pfam: TonB-dependent Receptor Plug Domain; Pfam: TonB dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: Domain of unknown function (DUF4480); TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.


ensembl_gene_id: NC99_32270
symbol: KOH43936.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial regulatory proteins, luxR family; Pfam: Y_Y_Y domain; SMART: helix_turn_helix, Lux Regulon.


ensembl_gene_id: NC99_32280
symbol: KOH43937.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.


ensembl_gene_id: NC99_32300
symbol: KOH43939.1
gene_biotype: protein_coding
description:
  Beta-mannosidase; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: NC99_32310
symbol: KOH43940.1
gene_biotype: protein_coding
description:
  Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.


ensembl_gene_id: NC99_32380
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: NC99_32430
symbol: KOH43952.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Cyclo-malto-dextrinase C-terminal domain; SMART: Alpha-amylase domain; Pfam: Alpha amylase, catalytic domain; Pfam: Cyclomaltodextrinase, N-terminal; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: NC99_32440
symbol: KOH43953.1
gene_biotype: protein_coding
description:
  Maltose phosphorylase; Pfam: Glycosyl hydrolase family 65 central catalytic domain; Pfam: Glycosyl hydrolase family 65, N-terminal domain; Pfam: Glycosyl hydrolase family 65, C-terminal domain.


ensembl_gene_id: NC99_32450
symbol: KOH43954.1
gene_biotype: protein_coding
description:
  TIGRFAM: PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase; TIGRFAM: bPGM: beta-phosphoglucomutase; PRINTS: Haloacid dehalogenase/epoxide hydrolase family signature; Pfam: Haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3.


ensembl_gene_id: NC99_32510
symbol: KOH43960.1
gene_biotype: protein_coding
description:
  LacI family transcriptional regulator; SMART: helix_turn _helix lactose operon repressor; Pfam: Periplasmic binding proteins and sugar binding domain of LacI family; Pfam: Bacterial regulatory proteins, lacI family.


ensembl_gene_id: NC99_32680
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: NC99_32780
symbol: KOH43919.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Acetyltransferase (GNAT) domain; TIGRFAM: GNAT_ablB: putative beta-lysine N-acetyltransferase.


ensembl_gene_id: NC99_32790
symbol: KOH43920.1
gene_biotype: protein_coding
description:
  Pfam: Lysine-2,3-aminomutase; Pfam: Radical SAM superfamily; TIGRFAM: TIGR00238: KamA family protein; TIGRFAM: lys_2_3_AblA: lysine-2,3-aminomutase.


ensembl_gene_id: NC99_32800
symbol: KOH43921.1
gene_biotype: protein_coding
description:
  PRINTS: Bacterial regulatory protein MarR family signature; Pfam: MarR family; SMART: helix_turn_helix multiple antibiotic resistance protein.


ensembl_gene_id: NC99_32820
symbol: KOH43923.1
gene_biotype: protein_coding
description:
  Translation factor Sua5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: NC99_32830
symbol: KOH43924.1
gene_biotype: protein_coding
description:
  N5-carboxyaminoimidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: NC99_32860
symbol: KOH43927.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helix-turn-helix domain; Pfam: Cupin domain; SMART: Helix-turn-helix XRE-family like proteins.


ensembl_gene_id: NC99_32870
symbol: KOH43928.1
gene_biotype: protein_coding
description:
  DNA topoisomerase III; SMART: Bacterial DNA topoisomeraes I ATP-binding domain; SMART: Bacterial DNA topoisomerase I DNA-binding domain; SMART:; Pfam: Toprim domain; PRINTS: Prokaryotic DNA topoisomerase I signature; TIGRFAM: topB: DNA topoisomerase III; Pfam: DNA topoisomerase.


ensembl_gene_id: NC99_32910
symbol: KOH43795.1
gene_biotype: protein_coding
description:
  DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: NC99_32940
symbol: KOH43798.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: NC99_33090
symbol: KOH43813.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: CHASE3 domain; Pfam: Response regulator receiver domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: His Kinase A (phospho-acceptor) domain; SMART: cheY-homologous receiver domain; SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: NC99_33110
symbol: KOH43815.1
gene_biotype: protein_coding
description:
  SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain; SMART: ATPases associated with a variety of cellular activities; Pfam: Sigma-54 interaction domain.


ensembl_gene_id: NC99_33160
symbol: KOH43820.1
gene_biotype: protein_coding
description:
  tonB-linked outer membrane protein; Pfam: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_33180
symbol: KOH43822.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70, region 4.


ensembl_gene_id: NC99_33200
symbol: KOH43824.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: helix_turn_helix, Lux Regulon; Pfam: Bacterial regulatory proteins, luxR family; Pfam: Y_Y_Y domain.


ensembl_gene_id: NC99_33210
symbol: KOH43825.1
gene_biotype: protein_coding
description:
  tonB-dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: Domain of unknown function (DUF4480); Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_33250
symbol: KOH43829.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Putative glucoamylase; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain.


ensembl_gene_id: NC99_33270
symbol: KOH43831.1
gene_biotype: protein_coding
description:
  beta-D-glucoside glucohydrolase; Pfam: Fibronectin type III-like domain; Pfam: Glycosyl hydrolase family 3 N terminal domain; PRINTS: Glycosyl hydrolase family 3 signature; Pfam: Glycosyl hydrolase family 3 C-terminal domain; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: NC99_33290
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase 1; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: NC99_33320
symbol: KOH43836.1
gene_biotype: protein_coding
description:
  PRINTS: Alpha/beta hydrolase fold signature; Pfam: Alpha/beta hydrolase family; PRINTS: Epoxide hydrolase signature.


ensembl_gene_id: NC99_33350
symbol: clpX
gene_biotype: protein_coding
description:
  ATPase AAA; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: NC99_33360
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: NC99_33370
symbol: KOH43841.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial trigger factor protein (TF); TIGRFAM: tig: trigger factor; Pfam: Bacterial trigger factor protein (TF) C-terminus.


ensembl_gene_id: NC99_33390
symbol: tatC
gene_biotype: protein_coding
description:
  Preprotein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.


ensembl_gene_id: NC99_33400
symbol: KOH43844.1
gene_biotype: protein_coding
description:
  TIGRFAM: recQ_fam: ATP-dependent DNA helicase, RecQ family; SMART:; Pfam: HRDC domain; Pfam: Helicase conserved C-terminal domain; SMART: DEAD-like helicases superfamily; SMART: Helicase and RNase D C-terminal; Pfam: RQC domain; Pfam: DEAD/DEAH box helicase; SMART: helicase superfamily c-terminal domain; TIGRFAM: recQ: ATP-dependent DNA helicase RecQ.


ensembl_gene_id: NC99_33410
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: NC99_33430
symbol: KOH43847.1
gene_biotype: protein_coding
description:
  TIGRFAM: alaDH: alanine dehydrogenase; Pfam: Alanine dehydrogenase/PNT, N-terminal domain; Pfam: Alanine dehydrogenase/PNT, C-terminal domain; SMART: Alanine dehydrogenase/PNT, C-terminal domain; SMART: Alanine dehydrogenase/PNT, N-terminal domain; Belongs to the AlaDH/PNT family.


ensembl_gene_id: NC99_33460
symbol: KOH43850.1
gene_biotype: protein_coding
description:
  Glutamate-ammonia ligase; Pfam: Glutamine synthetase, catalytic domain; Pfam: Glutamine synthetase, beta-Grasp domain.


ensembl_gene_id: NC99_33470
symbol: KOH43851.1
gene_biotype: protein_coding
description:
  Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Pfam: Phosphoglucomutase/phosphomannomutase, C-terminal domain; PRINTS: Phosphoglucomutase/phosphomannomutase family signature; TIGRFAM: Arch_GlmM: phosphoglucosamine mutase; Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II.


ensembl_gene_id: NC99_33550
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.


ensembl_gene_id: NC99_33580
symbol: secF
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.


ensembl_gene_id: NC99_33610
symbol: lolD
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.


ensembl_gene_id: NC99_33630
symbol: KOH43867.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence; Pfam: NIPSNAP.


ensembl_gene_id: NC99_33640
symbol: nhaA
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: NC99_33690
symbol: KOH43873.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70 region 2; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: NC99_33770
symbol: KOH43881.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: CotH protein.


ensembl_gene_id: NC99_33820
symbol: KOH43886.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: KOW (Kyprides, Ouzounis, Woese) motif; Pfam: Transcription termination factor nusG.


ensembl_gene_id: NC99_33840
symbol: KOH43888.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: G-rich domain on putative tyrosine kinase; Pfam: AAA domain; Pfam: Chain length determinant protein.


ensembl_gene_id: NC99_33850
symbol: KOH43889.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Right handed beta helix region; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain.


ensembl_gene_id: NC99_33890
symbol: KOH43767.1
gene_biotype: protein_coding
description:
  Membrane protein; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB dependent receptor; Pfam: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: NC99_33930
symbol: KOH43771.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Alpha-amylase domain; Pfam: Alpha amylase, catalytic domain; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: NC99_34010
symbol: KOH43779.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; Pfam: Oxidoreductase family, C-terminal alpha/beta domain; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.


ensembl_gene_id: NC99_34040
symbol: KOH43782.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: YceI-like domain; SMART: YceI-like domain; Belongs to the UPF0312 family.


ensembl_gene_id: NC99_34050
symbol: KOH43783.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helix-turn-helix domain; Pfam: AraC-like ligand binding domain; SMART: helix_turn_helix, arabinose operon control protein.


ensembl_gene_id: NC99_34070
symbol: KOH43785.1
gene_biotype: protein_coding
description:
  crp/Fnr family transcriptional regulator; Pfam: Cyclic nucleotide-binding domain; PRINTS: CRP bacterial regulatory protein HTH signature; Pfam: Crp-like helix-turn-helix domain; SMART: Cyclic nucleotide-monophosphate binding domain; SMART: helix_turn_helix, cAMP Regulatory protein.


ensembl_gene_id: NC99_34110
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: NC99_34120
symbol: KOH43790.1
gene_biotype: protein_coding
description:
  Coproporphyrinogen dehydrogenase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: NC99_34140
symbol: KOH43792.1
gene_biotype: protein_coding
description:
  Iron-sulfur cluster binding protein; Pfam: Uncharacterised ACR, YkgG family COG1556; Pfam: 4Fe-4S dicluster domain.


ensembl_gene_id: NC99_34150
symbol: KOH43793.1
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase; TIGRFAM: rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: rpiB: ribose 5-phosphate isomerase B; Pfam: Ribose/Galactose Isomerase.


ensembl_gene_id: NC99_34170
symbol: KOH43750.1
gene_biotype: protein_coding
description:
  Inner membrane lipoprotein YiaD precursor; Pfam: Glycine zipper; PRINTS: OMPA domain signature; Pfam: OmpA family.


ensembl_gene_id: NC99_34200
symbol: KOH43753.1
gene_biotype: protein_coding
description:
  PRINTS: Cold shock protein signature; SMART: Cold shock protein domain; Pfam: 'Cold-shock' DNA-binding domain.


ensembl_gene_id: NC99_34210
symbol: KOH43754.1
gene_biotype: protein_coding
description:
  RNA pseudouridine synthase; SMART: S4 RNA-binding domain; Pfam: RNA pseudouridylate synthase; Pfam: S4 domain; TIGRFAM: TIGR00093: pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: NC99_34220
symbol: KOH43755.1
gene_biotype: protein_coding
description:
  SMART: RNA 2'-O ribose methyltransferase substrate binding; Pfam: RNA 2'-O ribose methyltransferase substrate binding; Pfam: SpoU rRNA Methylase family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: NC99_34240
symbol: KOH43757.1
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.


ensembl_gene_id: NC99_34250
symbol: KOH43758.1
gene_biotype: protein_coding
description:
  Na+-dependent transporter; Pfam: Sodium:neurotransmitter symporter family; PRINTS: Sodium/chloride neurotransmitter symporter signature; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.


ensembl_gene_id: NC99_34270
symbol: rpsU
gene_biotype: protein_coding
description:
  PRINTS: Ribosomal protein S21 family signature; TIGRFAM: S21p: ribosomal protein S21; Pfam: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: NC99_34280
symbol: xerC-2
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: NC99_34290
symbol: KOH43762.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-54; Pfam: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: yfiA: ribosomal subunit interface protein.


ensembl_gene_id: NC99_34300
symbol: tuf
gene_biotype: protein_coding
description:
  Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: NC99_34310
symbol: secE
gene_biotype: protein_coding
description:
  Elongation factor Tu; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: NC99_34320
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: NC99_34330
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: NC99_34370
symbol: KOH43742.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: SelR domain; TIGRFAM: TIGR00357: methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: NC99_34390
symbol: KOH43744.1
gene_biotype: protein_coding
description:
  Dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: NC99_34400
symbol: KOH43745.1
gene_biotype: protein_coding
description:
  Sulfurtransferase; SMART: Rhodanese Homology Domain; Pfam: Rhodanese-like domain; Belongs to the UPF0176 family.


ensembl_gene_id: NC99_34430
symbol: KOH43748.1
gene_biotype: protein_coding
description:
  Histidine kinase; SMART: PAS domain; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Response regulator receiver domain; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: His Kinase A (phosphoacceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature; SMART: cheY-homologous receiver domain; Pfam: PAS fold.


ensembl_gene_id: NC99_34480
symbol: KOH43679.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helix-turn-helix domain; PRINTS: AraC bacterial regulatory protein HTH signature; SMART: helix_turn_helix, arabinose operon control protein.


ensembl_gene_id: NC99_34530
symbol: KOH43684.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: CBS domain; Pfam: Peptidase family M50; Belongs to the peptidase M50B family.


ensembl_gene_id: NC99_34560
symbol: KOH43687.1
gene_biotype: protein_coding
description:
  Pfam: Nitrogen regulatory protein P-II; PRINTS: P-II protein signature; SMART: Nitrogen regulatory protein P-II.


ensembl_gene_id: NC99_34580
symbol: KOH43689.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Helix-turn-helix domain; PRINTS: AraC bacterial regulatory protein HTH signature.


ensembl_gene_id: NC99_34700
symbol: KOH43701.1
gene_biotype: protein_coding
description:
  SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II; Pfam: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain.


ensembl_gene_id: NC99_34710
symbol: KOH43702.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Major Facilitator Superfamily; PRINTS: Tetracycline resistance protein signature.


ensembl_gene_id: NC99_34720
symbol: nuoN-2
gene_biotype: protein_coding
description:
  Hypothetical protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: NC99_34730
symbol: KOH43704.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); Pfam: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M; PRINTS: NADH-ubiquinone oxidoreductase subunit 4 signature.


ensembl_gene_id: NC99_34740
symbol: KOH43705.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit L; Pfam: NADH-Ubiquinone/plastoquinone (complex I), various chains; Pfam: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L; PRINTS: NADH-plastoquinone oxidoreductase chain 5 signature; PRINTS: NADH-ubiquinone oxidoreductase chain 5 signature.


ensembl_gene_id: NC99_34750
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: NC99_34760
symbol: KOH43707.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: NC99_34770
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: NC99_34790
symbol: KOH43710.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: NC99_34800
symbol: KOH43711.1
gene_biotype: protein_coding
description:
  Hypothetical protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: NC99_34810
symbol: KOH43712.1
gene_biotype: protein_coding
description:
  TIGRFAM: nuoE_fam: NADH-quinone oxidoreductase, E subunit; Pfam: Thioredoxin-like [2Fe-2S] ferredoxin.


ensembl_gene_id: NC99_34820
symbol: KOH43713.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit C/D; TIGRFAM: NuoD: NADH dehydrogenase (quinone), D subunit; Pfam: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C; Pfam: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; In the N-terminal section; belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: NC99_34950
symbol: KOH43726.1
gene_biotype: protein_coding
description:
  DNA methyltransferase; Pfam: HsdM N-terminal domain; Pfam: N-6 DNA Methylase; PRINTS: N12 class N6 adenine-specific DNA methyltransferase signature.


ensembl_gene_id: NC99_35010
symbol: KOH43732.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Pfam: ATP-dependent DNA helicase recG C-terminal; Pfam: Winged helix-turn-helix DNA-binding; Pfam: Divergent AAA domain.


ensembl_gene_id: NC99_35020
symbol: KOH43733.1
gene_biotype: protein_coding
description:
  Type I restriction-modification system, restriction subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.


ensembl_gene_id: NC99_35080
symbol: rplA
gene_biotype: protein_coding
description:
  50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: NC99_35090
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: NC99_35100
symbol: rplL
gene_biotype: protein_coding
description:
  50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: NC99_35110
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: NC99_35190
symbol: KOH43599.1
gene_biotype: protein_coding
description:
  Oxaloacetate decarboxylase; Pfam: HMGL-like; Pfam: Biotin-requiring enzyme; Pfam: Conserved carboxylase domain.


ensembl_gene_id: NC99_35200
symbol: KOH43600.1
gene_biotype: protein_coding
description:
  Pfam: Na+-transporting oxaloacetate decarboxylase beta subunit; TIGRFAM: Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit.


ensembl_gene_id: NC99_35260
symbol: KOH43606.1
gene_biotype: protein_coding
description:
  Hydrogenase; Pfam: 4Fe-4S binding domain; Pfam: Iron only hydrogenase large subunit, C-terminal domain; TIGRFAM: FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3; Pfam: 4Fe-4S dicluster domain.


ensembl_gene_id: NC99_35320
symbol: KOH43612.1
gene_biotype: protein_coding
description:
  SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: NC99_35330
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: NC99_35360
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: NC99_35380
symbol: smpB
gene_biotype: protein_coding
description:
  Single-stranded DNA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome t [...]


ensembl_gene_id: NC99_35410
symbol: KOH43621.1
gene_biotype: protein_coding
description:
  PRINTS: Uridine kinase signature; TIGRFAM: udk: uridine kinase; Pfam: Phosphoribulokinase / Uridine kinase family.


ensembl_gene_id: NC99_35420
symbol: KOH43622.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Stress responsive A/B Barrel Domain; SMART: Stress responsive A/B Barrel Domain.


ensembl_gene_id: NC99_35450
symbol: engB
gene_biotype: protein_coding
description:
  GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: NC99_35460
symbol: KOH43626.1
gene_biotype: protein_coding
description:
  Pfam: N-terminal domain of ribose phosphate pyrophosphokinase; Pfam: Phosphoribosyl synthetase-associated domain; TIGRFAM: ribP_PPkin: ribose-phosphate diphosphokinase.


ensembl_gene_id: NC99_35470
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: NC99_35480
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: NC99_35540
symbol: KOH43634.1
gene_biotype: protein_coding
description:
  2',3'-cyclic-nucleotide 2'-phosphodiesterase; Pfam: Calcineurin-like phosphoesterase; PRINTS: Apyrase family signature; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: NC99_35550
symbol: lnt
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: NC99_35590
symbol: KOH43639.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: helix_turn_helix, Lux Regulon; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70 region 2.


ensembl_gene_id: NC99_35610
symbol: KOH43641.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.


ensembl_gene_id: NC99_35630
symbol: KOH43643.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl hydrolases family 32 N-terminal domain; SMART: Glycosyl hydrolases family 32; Pfam: Glycosyl hydrolases family 32 C terminal; Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: NC99_35650
symbol: KOH43645.1
gene_biotype: protein_coding
description:
  MFS transporter; Pfam: Sugar (and other) transporter; TIGRFAM: SP: MFS transporter, sugar porter (SP) family; PRINTS: Sugar transporter signature; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: NC99_35670
symbol: KOH43647.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Glycosyl hydrolases family 32; Pfam: Glycosyl hydrolases family 32 N-terminal domain.


ensembl_gene_id: NC99_35920
symbol: KOH43672.1
gene_biotype: protein_coding
description:
  Putative DNA helicase; Pfam: Protein of unknown function (DUF4011); Pfam: Protein of unknown function (DUF3320); Pfam: Part of AAA domain; Pfam: AAA domain.


ensembl_gene_id: NC99_35930
symbol: KOH43673.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: BRCA1 C Terminus (BRCT) domain; SMART: breast cancer carboxy-terminal domain; Pfam: Exonuclease; SMART:.


ensembl_gene_id: NC99_36010
symbol: KOH43517.1
gene_biotype: protein_coding
description:
  Pfam: Acyl-CoA dehydrogenase, C-terminal domain; Pfam: Acyl-CoA dehydrogenase, middle domain; Pfam: Acyl-CoA dehydrogenase, N-terminal domain.


ensembl_gene_id: NC99_36090
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: NC99_36110
symbol: KOH43527.1
gene_biotype: protein_coding
description:
  TIGRFAM: Cu_nitrite_red: nitrite reductase, copper-containing; PRINTS: Copper containing nitrite reductase signature; Pfam: Multicopper oxidase.


ensembl_gene_id: NC99_36170
symbol: KOH43533.1
gene_biotype: protein_coding
description:
  Iron transporter FeoB; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: NC99_36190
symbol: KOH43535.1
gene_biotype: protein_coding
description:
  Pfam: Ribulose-phosphate 3 epimerase family; TIGRFAM: rpe: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: NC99_36200
symbol: KOH43536.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: NC99_36210
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: NC99_36220
symbol: KOH43538.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Creatinase/Prolidase N-terminal domain; Pfam: Metallopeptidase family M24.


ensembl_gene_id: NC99_36260
symbol: KOH43542.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Thioesterase superfamily; TIGRFAM: TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family.


ensembl_gene_id: NC99_36270
symbol: KOH43543.1
gene_biotype: protein_coding
description:
  PRINTS: Short-chain dehydrogenase/reductase (SDR) superfamily signature; Pfam: short chain dehydrogenase; SMART:; PRINTS: Glucose/ribitol dehydrogenase family signature; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: NC99_36280
symbol: KOH43544.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: YicC-like family, N-terminal region; TIGRFAM: TIGR00255: TIGR00255 family protein; Pfam: Domain of unknown function (DUF1732).


ensembl_gene_id: NC99_36300
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: NC99_36310
symbol: KOH43547.1
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxyphosphogluconate aldolase; Pfam: DAHP synthetase I family; TIGRFAM: KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase; Belongs to the KdsA family.


ensembl_gene_id: NC99_36320
symbol: KOH43548.1
gene_biotype: protein_coding
description:
  Tat (twin-arginine translocation) pathway signal sequence domain-containing protein; SMART: Stress responsive A/B Barrel Domain; Pfam: Stress responsive A/B Barrel Domain.


ensembl_gene_id: NC99_36370
symbol: KOH43553.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: NC99_36440
symbol: KOH43560.1
gene_biotype: protein_coding
description:
  Cation transporter; Pfam: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_36480
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: NC99_36510
symbol: KOH43567.1
gene_biotype: protein_coding
description:
  Histidine kinase sensor protein; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); TIGRFAM: sensory_box: PAS domain S-box protein; Pfam: PAS fold; SMART: Histidine kinase-like ATPases; SMART: PAS domain; Pfam: His Kinase A (phospho-acceptor) domain; SMART: His Kinase A (phosphoacceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Pfam: PAS domain.


ensembl_gene_id: NC99_36580
symbol: KOH43574.1
gene_biotype: protein_coding
description:
  Aminoacyl-histidine dipeptidase; Pfam: Peptidase dimerisation domain; Pfam: Peptidase family M20/M25/M40; TIGRFAM: aa-his-dipept: Xaa-His dipeptidase; PRINTS: X-His dipeptidase (M25) signature.


ensembl_gene_id: NC99_36590
symbol: KOH43575.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: YceI-like domain; Pfam: YceI-like domain; Belongs to the UPF0312 family.


ensembl_gene_id: NC99_36650
symbol: KOH43581.1
gene_biotype: protein_coding
description:
  Pfam: Sulfate transporter family; Pfam: STAS domain; Pfam: Sulfate transporter N-terminal domain with GLY motif.


ensembl_gene_id: NC99_36670
symbol: KOH43583.1
gene_biotype: protein_coding
description:
  Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases.


ensembl_gene_id: NC99_36690
symbol: KOH43585.1
gene_biotype: protein_coding
description:
  SMART: Aminopeptidase P, N-terminal domain; Pfam: Aminopeptidase P, N-terminal domain; Pfam: Metallopeptidase family M24.


ensembl_gene_id: NC99_36770
symbol: KOH43492.1
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: NC99_36790
symbol: KOH43494.1
gene_biotype: protein_coding
description:
  SMART: Delta-aminolevulinic acid dehydratase; PRINTS: Delta-aminolevulinic acid dehydratase signature; Pfam: Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.


ensembl_gene_id: NC99_36800
symbol: KOH43495.1
gene_biotype: protein_coding
description:
  uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: NC99_36810
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: NC99_36820
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: NC99_36840
symbol: KOH43499.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Possible lysine decarboxylase; TIGRFAM: TIGR00730: TIGR00730 family protein; Belongs to the LOG family.


ensembl_gene_id: NC99_36850
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA-cytosine methyltransferase; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: NC99_36920
symbol: KOH43507.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: BlaR1 peptidase M56; Pfam: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: tonB_Cterm: TonB family C-terminal domain.


ensembl_gene_id: NC99_36930
symbol: KOH43508.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: Tetratricopeptide repeats; Pfam: Tetratricopeptide repeat; Pfam: TPR repeat.


ensembl_gene_id: NC99_37040
symbol: hisB
gene_biotype: protein_coding
description:
  Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-SF-IIIA: HAD hydrolase, family IIIA; Pfam: Imidazoleglycerol-phosphate dehydratase; Pfam: HAD-hyrolase-like; TIGRFAM: Histidinol-ppas: histidinol-phosphate phosphatase domain; TIGRFAM: hisB_Nterm: histidinol-phosphatase; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.


ensembl_gene_id: NC99_37050
symbol: hisC
gene_biotype: protein_coding
description:
  TIGRFAM: hisC: histidinol-phosphate transaminase; Pfam: Aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: NC99_37060
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: NC99_37070
symbol: hisG
gene_biotype: protein_coding
description:
  aTP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: NC99_37090
symbol: dnaJ
gene_biotype: protein_coding
description:
  Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]


ensembl_gene_id: NC99_37100
symbol: grpE
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dep [...]


ensembl_gene_id: NC99_37140
symbol: KOH43435.1
gene_biotype: protein_coding
description:
  Pfam: Bacterial regulatory proteins, luxR family; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain; Pfam: PAS domain; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: helix_turn_helix, Lux Regulon; PRINTS: LuxR bacterial regulatory protein HTH signature.


ensembl_gene_id: NC99_37150
symbol: KOH43436.1
gene_biotype: protein_coding
description:
  PRINTS: X-His dipeptidase (M25) signature; Pfam: Peptidase family M20/M25/M40; TIGRFAM: aa-his-dipept: Xaa-His dipeptidase.


ensembl_gene_id: NC99_37170
symbol: nnrD
gene_biotype: protein_coding
description:
  Sugar kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of  [...]


ensembl_gene_id: NC99_37190
symbol: KOH43440.1
gene_biotype: protein_coding
description:
  Peptide transporter; TIGRFAM: yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter); Pfam: POT family.


ensembl_gene_id: NC99_37220
symbol: KOH43443.1
gene_biotype: protein_coding
description:
  acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.


ensembl_gene_id: NC99_37280
symbol: KOH43449.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: Two component regulator propeller; SMART: Histidine kinase-like ATPases; SMART: His Kinase A (phosphoacceptor) domain; Pfam: Y_Y_Y domain; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PRINTS: Bacterial sensor protein C-terminal signature.


ensembl_gene_id: NC99_37300
symbol: KOH43451.1
gene_biotype: protein_coding
description:
  Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Pfam: 3-beta hydroxysteroid dehydrogenase/isomerase family.


ensembl_gene_id: NC99_37460
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: NC99_37470
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: NC99_37510
symbol: KOH43428.1
gene_biotype: protein_coding
description:
  Pfam: Glycosyl hydrolases family 32 C terminal; Pfam: Concanavalin A-like lectin/glucanases superfamily; Pfam: Glycosyl hydrolases family 32 N-terminal domain; SMART: Glycosyl hydrolases family 32; Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: NC99_37540
symbol: KOH43431.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Sugar (and other) transporter; PRINTS: Sugar transporter signature; TIGRFAM: SP: MFS transporter, sugar porter (SP) family; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: NC99_37580
symbol: KOH43417.1
gene_biotype: protein_coding
description:
  beta-L-N-acetylhexosaminidase; Pfam: Glycosyl hydrolase family 3 C-terminal domain; Pfam: Beta-lactamase; Pfam: Glycosyl hydrolase family 3 N terminal domain.


ensembl_gene_id: NC99_37610
symbol: KOH43420.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: helicase superfamily c-terminal domain; SMART: DEAD-like helicases superfamily; Pfam: DbpA RNA binding domain; Pfam: Helicase conserved C-terminal domain; Pfam: DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: NC99_37640
symbol: KOH43423.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: LuxR bacterial regulatory protein HTH signature; SMART: cheY-homologous receiver domain; Pfam: Bacterial regulatory proteins, luxR family; Pfam: Response regulator receiver domain; SMART: helix_turn_helix, Lux Regulon.


ensembl_gene_id: NC99_37650
symbol: KOH43424.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: LuxR bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory proteins, luxR family; SMART: helix_turn_helix, Lux Regulon; Pfam: Response regulator receiver domain.


ensembl_gene_id: NC99_37710
symbol: KOH43344.1
gene_biotype: protein_coding
description:
  SMART: His Kinase A (phosphoacceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Pfam: His Kinase A (phospho-acceptor) domain; SMART: Histidine kinase-like ATPases.


ensembl_gene_id: NC99_37720
symbol: KOH43345.1
gene_biotype: protein_coding
description:
  Chemotaxis protein CheY; SMART: cheY-homologous receiver domain; Pfam: Transcriptional regulatory protein, C terminal; SMART: Transcriptional regulatory protein, C terminal; Pfam: Response regulator receiver domain.


ensembl_gene_id: NC99_37740
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate-transporting ATPase; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: NC99_37750
symbol: KOH43348.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: 3a0107s02c: phosphate ABC transporter, permease protein PstA; Pfam: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: NC99_37760
symbol: KOH43349.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: NC99_37770
symbol: KOH43350.1
gene_biotype: protein_coding
description:
  Pfam: PBP superfamily domain; TIGRFAM: 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS; Belongs to the PstS family.


ensembl_gene_id: NC99_37830
symbol: KOH43356.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: A domain in the BMP inhibitor chordin and in microbial proteins; Pfam: CHRD domain.


ensembl_gene_id: NC99_37870
symbol: KOH43360.1
gene_biotype: protein_coding
description:
  TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4.


ensembl_gene_id: NC99_37900
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: NC99_37920
symbol: KOH43365.1
gene_biotype: protein_coding
description:
  Histidine kinase; Pfam: Tetratricopeptide repeat; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Pfam: His Kinase A (phospho-acceptor) domain; SMART: Tetratricopeptide repeats; SMART: His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: NC99_37940
symbol: KOH43367.1
gene_biotype: protein_coding
description:
  UDP-galactose-4-epimerase; Pfam: NAD dependent epimerase/dehydratase family; TIGRFAM: galE: UDP-glucose 4-epimerase GalE; Pfam: UDP-glucose 4-epimerase C-term subunit; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: NC99_37960
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: NC99_38050
symbol: KOH43378.1
gene_biotype: protein_coding
description:
  Flavin reductase-like protein; SMART: Flavin reductase like domain; Pfam: Flavin reductase like domain.


ensembl_gene_id: NC99_38090
symbol: KOH43382.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Peptidase family M3; TIGRFAM: pepF: oligoendopeptidase F; Pfam: Oligopeptidase F.


ensembl_gene_id: NC99_38100
symbol: KOH43383.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: AmmeMemoSam_rS: AmmeMemoRadiSam system radical SAM enzyme; Pfam: Radical SAM superfamily; Pfam: 4Fe-4S single cluster domain.


ensembl_gene_id: NC99_38110
symbol: KOH43384.1
gene_biotype: protein_coding
description:
  Pfam: Memo-like protein; TIGRFAM: AmmeMemoSam_B: AmmeMemoRadiSam system protein B; Belongs to the MEMO1 family.


ensembl_gene_id: NC99_38130
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: NC99_38190
symbol: KOH43392.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: NC99_38200
symbol: KOH43393.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: Glycosyl hydrolase family 29 signature; Pfam: Alpha-L-fucosidase; SMART: Alpha-L-fucosidase.


ensembl_gene_id: NC99_38280
symbol: KOH43401.1
gene_biotype: protein_coding
description:
  Glycine/betaine ABC transporter; Pfam: BCCT family transporter; TIGRFAM: bcct: transporter, betaine/carnitine/choline transporter (BCCT) family; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: NC99_38290
symbol: mscL
gene_biotype: protein_coding
description:
  Hypothetical protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: NC99_38340
symbol: coaX
gene_biotype: protein_coding
description:
  Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: NC99_38430
symbol: KOH43338.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Domain of unknown function (DUF4469) with IG-like fold; Pfam: DNA-binding domain.


ensembl_gene_id: NC99_38460
symbol: KOH43286.1
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; overlaps another CDS with the same product name.


ensembl_gene_id: NC99_38490
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase subunit alpha; Pfam: tRNA synthetases class II core domain (F); Pfam: Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: pheS: phenylalanine--tRNA ligase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: NC99_38530
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: NC99_38540
symbol: KOH43294.1
gene_biotype: protein_coding
description:
  RfaE bifunctional protein, domain II; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.


ensembl_gene_id: NC99_38550
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: NC99_38560
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: NC99_38590
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine amidotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: NC99_38660
symbol: KOH43306.1
gene_biotype: protein_coding
description:
  tonB-denpendent receptor; Pfam: Carboxypeptidase regulatory-like domain; Pfam: TonB dependent receptor; Pfam: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: NC99_38680
symbol: KOH43308.1
gene_biotype: protein_coding
description:
  tonB-dependent receptor; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor; Pfam: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: NC99_38720
symbol: KOH43312.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: NC99_38810
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: NC99_38830
symbol: lspA
gene_biotype: protein_coding
description:
  Peptidase A8; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: NC99_38840
symbol: KOH43324.1
gene_biotype: protein_coding
description:
  Pfam: HlyD family secretion protein; PRINTS: Gram-negative bacterial RTX secretion protein D signature.


ensembl_gene_id: NC99_38850
symbol: KOH43325.1
gene_biotype: protein_coding
description:
  Pfam: ABC transporter; Pfam: Peptidase C39 family; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter transmembrane region.


ensembl_gene_id: NC99_38860
symbol: KOH43326.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: thiopep_ocin: thiopeptide-type bacteriocin biosynthesis domain; Pfam: SpaB C-terminal domain.


ensembl_gene_id: NC99_38870
symbol: KOH43327.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Lantibiotic dehydratase, C terminus; Pfam: Lantibiotic dehydratase, N terminus.


ensembl_gene_id: NC99_38890
symbol: KOH43329.1
gene_biotype: protein_coding
description:
  PRINTS: Frankia sp. LanC-like protein signature; Pfam: Lanthionine synthetase C-like protein; PRINTS: LanC-like protein superfamily signature.


ensembl_gene_id: NC99_38930
symbol: KOH43333.1
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-GALP_mutase: UDP-galactopyranose mutase; Pfam: UDP-galactopyranose mutase; Pfam: NAD(P)-binding Rossmann-like domain.


ensembl_gene_id: NC99_38980
symbol: KOH43268.1
gene_biotype: protein_coding
description:
  Pfam: Protein of unknown function (DUF3972); SMART: Helix-turn-helix XRE-family like proteins; Pfam: Helix-turn-helix domain.


ensembl_gene_id: NC99_39000
symbol: KOH43270.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Domain of unknown function (DUF4480); Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_39170
symbol: KOH43249.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Tetratricopeptide repeat; SMART: Tetratricopeptide repeats; Pfam: CHAT domain.


ensembl_gene_id: NC99_39190
symbol: KOH43251.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART:; Pfam: Putative RNA methylase family UPF0020; Pfam: THUMP domain; Belongs to the methyltransferase superfamily.


ensembl_gene_id: NC99_39210
symbol: KOH43253.1
gene_biotype: protein_coding
description:
  TIGRFAM: cysK: cysteine synthase A; Pfam: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysKM: cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: NC99_39230
symbol: KOH43255.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC; Pfam: Nicotinamide mononucleotide transporter.


ensembl_gene_id: NC99_39240
symbol: KOH43256.1
gene_biotype: protein_coding
description:
  Peptidase S41; SMART: tail specific protease; TIGRFAM: prc: C-terminal processing peptidase; SMART: Domain present in PSD-95, Dlg, and ZO-1/2; Pfam: PDZ domain; Pfam: Peptidase family S41; Belongs to the peptidase S41A family.


ensembl_gene_id: NC99_39280
symbol: KOH43260.1
gene_biotype: protein_coding
description:
  Aminotransferase; Pfam: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: NC99_39300
symbol: KOH43262.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Glycosyl transferases group 1; Pfam: Glycosyl transferase 4-like domain.


ensembl_gene_id: NC99_39370
symbol: KOH43206.1
gene_biotype: protein_coding
description:
  Glycoside hydrolase family 5; SMART: Cellulose Binding Domain Type IV; Pfam: Cellulase (glycosyl hydrolase family 5); TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: Carbohydrate binding module (family 6).


ensembl_gene_id: NC99_39390
symbol: KOH43208.1
gene_biotype: protein_coding
description:
  Licheninase; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: Glycosyl hydrolases family 16.


ensembl_gene_id: NC99_39400
symbol: KOH43209.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: Haloacid dehalogenase/epoxide hydrolase family signature; TIGRFAM: HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3; Pfam: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: NC99_39410
symbol: ispG
gene_biotype: protein_coding
description:
  (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: NC99_39430
symbol: KOH43212.1
gene_biotype: protein_coding
description:
  Gliding motility protein GldA; SMART: ATPases associated with a variety of cellular activities; TIGRFAM: GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA; Pfam: ABC transporter.


ensembl_gene_id: NC99_39460
symbol: KOH43215.1
gene_biotype: protein_coding
description:
  RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: NC99_39470
symbol: KOH43216.1
gene_biotype: protein_coding
description:
  TIGRFAM: dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; Pfam: NAD dependent epimerase/dehydratase family; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: NC99_39510
symbol: KOH43220.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: Two component regulator propeller.


ensembl_gene_id: NC99_39520
symbol: KOH43221.1
gene_biotype: protein_coding
description:
  Deoxyribonucleoside-triphosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: NC99_39540
symbol: KOH43223.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Oxidoreductase family, C-terminal alpha/beta domain; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence; Pfam: Oxidoreductase family, NAD-binding Rossmann fold.


ensembl_gene_id: NC99_39580
symbol: KOH43227.1
gene_biotype: protein_coding
description:
  Pfam: TonB-dependent Receptor Plug Domain; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_39640
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: NC99_39660
symbol: cobQ
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: NC99_39670
symbol: KOH43236.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Histidine phosphatase superfamily (branch 1); SMART: Phosphoglycerate mutase family.


ensembl_gene_id: NC99_39690
symbol: cobS
gene_biotype: protein_coding
description:
  Hypothetical protein; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: NC99_39700
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: NC99_39770
symbol: KOH43246.1
gene_biotype: protein_coding
description:
  Beta-galactosidase; PRINTS: Glycosyl hydrolase family 2 signature; SMART: Beta galactosidase small chain; Pfam: Glycosyl hydrolases family 2, sugar binding domain; Pfam: Glycosyl hydrolases family 2, TIM barrel domain; Pfam: Glycosyl hydrolases family 2; Pfam: Beta galactosidase small chain.


ensembl_gene_id: NC99_39780
symbol: KOH43247.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2.


ensembl_gene_id: NC99_39790
symbol: KOH43199.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Flavodoxin; Pfam: Oxidoreductase NAD-binding domain; PRINTS: Flavoprotein pyridine nucleotide cytochrome reductase signature; Pfam: FAD binding domain; PRINTS: Flavodoxin signature.


ensembl_gene_id: NC99_39870
symbol: KOH43163.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Pfam: CoA-binding domain; Pfam: Bacterial sugar transferase.


ensembl_gene_id: NC99_39880
symbol: KOH43164.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: NC99_39950
symbol: KOH43171.1
gene_biotype: protein_coding
description:
  PRINTS: Prolyl oligopeptidase serine protease (S9A) signature; Pfam: Prolyl oligopeptidase, N-terminal beta-propeller domain; Pfam: Prolyl oligopeptidase family.


ensembl_gene_id: NC99_39970
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: NC99_39980
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: NC99_40000
symbol: KOH43176.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: F5/8 type C domain; Pfam: Alpha-L-fucosidase; SMART: Alpha-L-fucosidase.


ensembl_gene_id: NC99_40160
symbol: KOH43192.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Nucleotidyltransferase substrate binding protein like; TIGRFAM: HI0074: nucleotidyltransferase substrate binding protein, HI0074 family.


ensembl_gene_id: NC99_40250
symbol: KOH43136.1
gene_biotype: protein_coding
description:
  TIGRFAM: cysK: cysteine synthase A; TIGRFAM: cysKM: cysteine synthase; Pfam: Pyridoxal-phosphate dependent enzyme; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: NC99_40270
symbol: KOH43138.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; SMART: ATPases associated with a variety of cellular activities; Pfam: Domain of unknown function (DUF4162); Pfam: ABC transporter.


ensembl_gene_id: NC99_40290
symbol: KOH43140.1
gene_biotype: protein_coding
description:
  Pfam: Outer membrane efflux protein; TIGRFAM: outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.


ensembl_gene_id: NC99_40300
symbol: KOH43141.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Pfam: Biotin-lipoyl like; Pfam: HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: NC99_40310
symbol: KOH43142.1
gene_biotype: protein_coding
description:
  Multidrug transporter; Pfam: AcrB/AcrD/AcrF family; PRINTS: Acriflavin resistance protein family signature; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: NC99_40340
symbol: KOH43145.1
gene_biotype: protein_coding
description:
  SMART: Biotin and Thiamin Synthesis associated domain; Pfam: Radical SAM superfamily; TIGRFAM: rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE; SMART: Elongator protein 3, MiaB family, Radical SAM.


ensembl_gene_id: NC99_40350
symbol: KOH43146.1
gene_biotype: protein_coding
description:
  methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: NC99_40370
symbol: KOH43148.1
gene_biotype: protein_coding
description:
  Ferredoxin; Pfam: Iron only hydrogenase large subunit, C-terminal domain; TIGRFAM: FeFe_hydrog_A: [FeFe] hydrogenase, group A; Pfam: Iron hydrogenase small subunit; Pfam: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Pfam: 4Fe-4S dicluster domain; Pfam: 2Fe-2S iron-sulfur cluster binding domain; SMART: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; SMART: Iron hydrogenase small subunit.


ensembl_gene_id: NC99_40380
symbol: KOH43149.1
gene_biotype: protein_coding
description:
  SMART: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Pfam: SLBB domain; Pfam: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Pfam: Respiratory-chain NADH dehydrogenase 51 Kd subunit.


ensembl_gene_id: NC99_40440
symbol: KOH43155.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: P-type cation-transporting ATPase superfamily signature; Pfam: Putative metal-binding domain of cation transport ATPase; Pfam: E1-E2 ATPase; Pfam: haloacid dehalogenase-like hydrolase; PRINTS: Copper-transporting ATPase signature; TIGRFAM: ATPase_P-type: HAD ATPase, P-type, family IC; Pfam: Heavy-metal-associated domain.


ensembl_gene_id: NC99_40450
symbol: KOH43156.1
gene_biotype: protein_coding
description:
  Pfam: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: ccoS: cytochrome oxidase maturation protein, cbb3-type.


ensembl_gene_id: NC99_40460
symbol: KOH43157.1
gene_biotype: protein_coding
description:
  Pfam: Cytochrome C oxidase, mono-heme subunit/FixO; Pfam: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: ccoO: cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: ccoN: cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: NC99_40480
symbol: KOH43159.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Cytochrome C oxidase, cbb3-type, subunit III; Pfam: N-terminal domain of cytochrome oxidase-cbb3, FixP.


ensembl_gene_id: NC99_40490
symbol: KOH43160.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: 4Fe-4S binding domain; Pfam: 4Fe-4S dicluster domain; Pfam: IG-like fold at C-terminal of FixG, putative oxidoreductase; TIGRFAM: ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG.


ensembl_gene_id: NC99_40510
symbol: KOH43097.1
gene_biotype: protein_coding
description:
  30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: NC99_40530
symbol: fusA
gene_biotype: protein_coding
description:
  Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: NC99_40540
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: NC99_40550
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: NC99_40570
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: NC99_40580
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: NC99_40590
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: NC99_40600
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: NC99_40610
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: NC99_40620
symbol: KOH43108.1
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: NC99_40630
symbol: rpmC
gene_biotype: protein_coding
description:
  TIGRFAM: L29: ribosomal protein L29; Pfam: Ribosomal L29 protein; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: NC99_40640
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: NC99_40660
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: NC99_40670
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: NC99_40680
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: NC99_40690
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: NC99_40700
symbol: KOH43116.1
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.


ensembl_gene_id: NC99_40720
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: NC99_40750
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: NC99_40760
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: NC99_40770
symbol: rpmJ
gene_biotype: protein_coding
description:
  Pfam: Ribosomal protein L36; TIGRFAM: rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: NC99_40780
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: NC99_40790
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: NC99_40810
symbol: KOH43127.1
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; SMART: S4 RNA-binding domain; Pfam: S4 domain; TIGRFAM: rpsD_bact: ribosomal protein S4; Pfam: Ribosomal protein S4/S9 N-terminal domain; Belongs to the universal ribosomal protein uS4 family.


ensembl_gene_id: NC99_40820
symbol: KOH43128.1
gene_biotype: protein_coding
description:
  SMART: RNA polymerases D; TIGRFAM: rpoA: DNA-directed RNA polymerase, alpha subunit; Pfam: RNA polymerase Rpb3/Rpb11 dimerisation domain; Pfam: Bacterial RNA polymerase, alpha chain C terminal domain; Pfam: RNA polymerase Rpb3/RpoA insert domain.


ensembl_gene_id: NC99_40830
symbol: KOH43129.1
gene_biotype: protein_coding
description:
  Pfam: Ribosomal protein L17; TIGRFAM: L17: ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.


ensembl_gene_id: NC99_40850
symbol: KOH43131.1
gene_biotype: protein_coding
description:
  Pfam: ABC transporter; TIGRFAM: ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family; SMART: ATPases associated with a variety of cellular activities.


ensembl_gene_id: NC99_40860
symbol: KOH43132.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PRINTS: OMPA domain signature; Pfam: OmpA family; Pfam: Outer membrane protein beta-barrel domain.


ensembl_gene_id: NC99_40870
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: NC99_40890
symbol: KOH43086.1
gene_biotype: protein_coding
description:
  Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: NC99_40970
symbol: KOH43094.1
gene_biotype: protein_coding
description:
  Collagen-binding protein; Pfam: Domain of unknown function (DUF4480); TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Secretin and TonB N terminus short domain; SMART: Secretin and TonB N terminus short domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB-dependent Receptor Plug Domain; Pfam: TonB dependent receptor.


ensembl_gene_id: NC99_41000
symbol: lolD-2
gene_biotype: protein_coding
description:
  ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.


ensembl_gene_id: NC99_41020
symbol: KOH43068.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Pyridine nucleotide-disulphide oxidoreductase; PRINTS: Pyridine nucleotide disulphide reductase class-I signature; SMART: Rhodanese Homology Domain; Pfam: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Pfam: Rhodanese-like domain; PRINTS: FAD-dependent pyridine nucleotide reductase signature.


ensembl_gene_id: NC99_41030
symbol: KOH43069.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Thioredoxin; TIGRFAM: thioredoxin: thioredoxin; PRINTS: Thioredoxin family signature; Belongs to the thioredoxin family.


ensembl_gene_id: NC99_41050
symbol: KOH43071.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: helix_turn_helix, cAMP Regulatory protein; Pfam: Crp-like helix-turn-helix domain; Pfam: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-monophosphate binding domain.


ensembl_gene_id: NC99_41110
symbol: KOH43077.1
gene_biotype: protein_coding
description:
  Pfam: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent.


ensembl_gene_id: NC99_41120
symbol: KOH43078.1
gene_biotype: protein_coding
description:
  Pfam: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent; Belongs to the isocitrate and isopropylmalate dehydrogenases family.


ensembl_gene_id: NC99_41130
symbol: KOH43079.1
gene_biotype: protein_coding
description:
  Pfam: Aconitase family (aconitate hydratase); PRINTS: Aconitase family signature; Pfam: Aconitase C-terminal domain; TIGRFAM: aconitase_mito: aconitate hydratase, mitochondrial.


ensembl_gene_id: NC99_41180
symbol: KOH43084.1
gene_biotype: protein_coding
description:
  TIGRFAM: TIGR01212: radical SAM protein, TIGR01212 family; Pfam: Radical SAM superfamily; SMART: Elongator protein 3, MiaB family, Radical SAM.


ensembl_gene_id: NC99_41200
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: NC99_41260
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: NC99_41310
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: NC99_41340
symbol: KOH43047.1
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase; Pfam: HD domain; Pfam: Probable RNA and SrmB- binding site of polymerase A; Pfam: Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: NC99_41360
symbol: KOH43049.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Subunit R is required for both nuclease and ATPase activities, but not for modification.


ensembl_gene_id: NC99_41380
symbol: KOH43051.1
gene_biotype: protein_coding
description:
  TIGRFAM: hsdM: type I restriction-modification system, M subunit; PRINTS: N12 class N6 adenine-specific DNA methyltransferase signature; Pfam: Type I restriction modification DNA specificity domain; Pfam: N-6 DNA Methylase; Pfam: HsdM N-terminal domain.


ensembl_gene_id: NC99_41390
symbol: KOH43052.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Pfam: Helix-turn-helix; SMART: Helix-turn-helix XRE-family like proteins.


ensembl_gene_id: NC99_41530
symbol: KOH43020.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Alanine racemase, N-terminal domain; Pfam: Putative serine dehydratase domain.


ensembl_gene_id: NC99_41540
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: NC99_41560
symbol: KOH43023.1
gene_biotype: protein_coding
description:
  GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: NC99_41620
symbol: KOH43029.1
gene_biotype: protein_coding
description:
  TIGRFAM: GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I; Pfam: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; PRINTS: Glyceraldehyde-3-phosphate dehydrogenase signature; SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Pfam: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: NC99_41660
symbol: KOH43033.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; Pfam: Bacterial Ig-like domain; Pfam: SprB repeat.


ensembl_gene_id: NC99_41680
symbol: KOH43035.1
gene_biotype: protein_coding
description:
  Hypothetical protein; SMART: LytTr DNA-binding domain; Pfam: LytTr DNA-binding domain; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain.


ensembl_gene_id: NC99_41720
symbol: KOH42956.1
gene_biotype: protein_coding
description:
  Inositol-1-monophosphatase; PRINTS: SuhB family inositol monophosphatase signature; PRINTS: Inositol monophosphatase superfamily signature; Pfam: Inositol monophosphatase family.


ensembl_gene_id: NC99_41770
symbol: KOH42961.1
gene_biotype: protein_coding
description:
  Thiamin-regulated outer membrane receptor Omr1; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Carboxypeptidase regulatory-like domain.


ensembl_gene_id: NC99_41810
symbol: KOH42965.1
gene_biotype: protein_coding
description:
  Nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: mazG: MazG family protein; Pfam: MazG nucleotide pyrophosphohydrolase domain.


ensembl_gene_id: NC99_41850
symbol: KOH42969.1
gene_biotype: protein_coding
description:
  Cytochrome C551; Pfam: Iron-binding zinc finger CDGSH type; SMART: CDGSH-type zinc finger. Function unknown.


ensembl_gene_id: NC99_41910
symbol: KOH42975.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Pfam: AsnC family; SMART: helix_turn_helix ASNC type; Pfam: Winged helix-turn-helix DNA-binding; PRINTS: AsnC bacterial regulatory protein HTH signature.


ensembl_gene_id: NC99_41920
symbol: KOH42976.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 3; SMART: RNA 2'-O ribose methyltransferase substrate binding; Pfam: RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3; Pfam: SpoU rRNA Methylase family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: NC99_41930
symbol: KOH42977.1
gene_biotype: protein_coding
description:
  Glycosyl transferase family 2; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.


ensembl_gene_id: NC99_41940
symbol: KOH42978.1
gene_biotype: protein_coding
description:
  TIGRFAM: rumA: 23S rRNA (uracil-5-)-methyltransferase RumA; Pfam: TRAM domain; Pfam: tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: NC99_41960
symbol: KOH42980.1
gene_biotype: protein_coding
description:
  ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose.


ensembl_gene_id: NC99_41990
symbol: KOH42983.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC-2 type transporter.


ensembl_gene_id: NC99_42030
symbol: KOH42987.1
gene_biotype: protein_coding
description:
  Type I deoxyribonuclease HsdR; SMART: Domain present in PSD-95, Dlg, and ZO-1/2; PRINTS: HtrA/DegQ protease family signature; Pfam: Trypsin-like peptidase domain; TIGRFAM: degP_htrA_DO: peptidase Do; Pfam: PDZ domain.


ensembl_gene_id: NC99_42040
symbol: KOH42988.1
gene_biotype: protein_coding
description:
  SMART: His Kinase A (phosphoacceptor) domain; SMART: Histidine kinase-like ATPases; Pfam: Cache domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: NC99_42050
symbol: KOH42989.1
gene_biotype: protein_coding
description:
  Histidine kinase; SMART: Tetratricopeptide repeats; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: His Kinase A (phosphoacceptor) domain; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Tetratricopeptide repeat.


ensembl_gene_id: NC99_42090
symbol: KOH42993.1
gene_biotype: protein_coding
description:
  Pfam: D-Ala-D-Ala carboxypeptidase 3 (S13) family; PRINTS: D-Ala-D-Ala carboxypeptidase 3 (S13) family signature; TIGRFAM: PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.


ensembl_gene_id: NC99_42100
symbol: crcB
gene_biotype: protein_coding
description:
  Hypothetical protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: NC99_42130
symbol: KOH42997.1
gene_biotype: protein_coding
description:
  Chemotaxis protein CheY; SMART: cheY-homologous receiver domain; SMART: ATPases associated with a variety of cellular activities; PRINTS: FIS bacterial regulatory protein HTH signature; Pfam: Sigma-54 interaction domain; Pfam: Response regulator receiver domain; Pfam: Bacterial regulatory protein, Fis family.


ensembl_gene_id: NC99_42170
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: NC99_42190
symbol: KOH43003.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 5; Pfam: TAT (twin-arginine translocation) pathway signal sequence; Pfam: Cellulase (glycosyl hydrolase family 5); TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: NC99_42230
symbol: KOH43007.1
gene_biotype: protein_coding
description:
  Collagen-binding protein; Pfam: TonB dependent receptor; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: Domain of unknown function (DUF4480); Pfam: TonB-dependent Receptor Plug Domain.


ensembl_gene_id: NC99_42320
symbol: KOH42925.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2.


ensembl_gene_id: NC99_42360
symbol: KOH42929.1
gene_biotype: protein_coding
description:
  Membrane protein; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB-dependent Receptor Plug Domain; SMART: Secretin and TonB N terminus short domain; Pfam: Secretin and TonB N terminus short domain.


ensembl_gene_id: NC99_42490
symbol: KOH42942.1
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1; Pfam: Haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3; PRINTS: Haloacid dehalogenase/epoxide hydrolase family signature.


ensembl_gene_id: NC99_42500
symbol: KOH42943.1
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: NC99_42640
symbol: KOH42902.1
gene_biotype: protein_coding
description:
  SMART: helix_turn_helix gluconate operon transcriptional repressor; PRINTS: GntR bacterial regulatory protein HTH signature; Pfam: UTRA domain; SMART:; Pfam: Bacterial regulatory proteins, gntR family.


ensembl_gene_id: NC99_42690
symbol: KOH42907.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Polysaccharide lyase family 4, domain III; TIGRFAM: aman2_put: putative alpha-1,2-mannosidase; Pfam: Glycosyl hydrolase family 92.


ensembl_gene_id: NC99_42700
symbol: KOH42908.1
gene_biotype: protein_coding
description:
  Beta-glucosidase; SMART:; Pfam: Glycosyl hydrolase family 3 C-terminal domain; Pfam: Fibronectin type III-like domain; Pfam: PA14 domain; Pfam: Glycosyl hydrolase family 3 N terminal domain; PRINTS: Glycosyl hydrolase family 3 signature.


ensembl_gene_id: NC99_42760
symbol: KOH42914.1
gene_biotype: protein_coding
description:
  Membrane protein; Pfam: Domain of unknown function (DUF3817); TIGRFAM: integ_memb_HG: integral membrane protein.


ensembl_gene_id: NC99_42780
symbol: KOH42916.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Pfam: Helix-turn-helix domain; SMART: Helix-turn-helix XRE-family like proteins; Pfam: Cupin domain.


ensembl_gene_id: NC99_42800
symbol: KOH42918.1
gene_biotype: protein_coding
description:
  Non-reducing end alpha-L-arabinofuranosidase; SMART: Alpha-L-arabinofuranosidase C-terminus; Pfam: Alpha-L-arabinofuranosidase C-terminus.


ensembl_gene_id: NC99_42870
symbol: KOH42844.1
gene_biotype: protein_coding
description:
  5'-nucleotidase; PRINTS: Apyrase family signature; Pfam: 5'-nucleotidase, C-terminal domain; Pfam: Calcineurin-like phosphoesterase; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: NC99_42880
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.


ensembl_gene_id: NC99_42910
symbol: KOH42848.1
gene_biotype: protein_coding
description:
  TIGRFAM: asp_race: aspartate racemase; Pfam: Asp/Glu/Hydantoin racemase; Belongs to the aspartate/glutamate racemases family.


