# pathwayInfo

id: PF03636
description: Glycosyl hydrolase family 65, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03636
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03636_Glycosyl_hydrolase_family_65,_N-terminal_domain_


id: PF03706
description: Lysylphosphatidylglycerol synthase TM region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03706
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03706_Lysylphosphatidylglycerol_synthase_TM_region


id: PF03717
description: Penicillin-binding Protein dimerisation domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03717
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03717_Penicillin-binding_Protein_dimerisation_domain


id: PF03719
description: Ribosomal protein S5, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03719
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03719_Ribosomal_protein_S5,_C-terminal_domain


id: PF03729
description: Short repeat of unknown function (DUF308)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03729
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03729_Short_repeat_of_unknown_function_(DUF308)


id: PF03775
description: Septum formation inhibitor MinC, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03775
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03775_Septum_formation_inhibitor_MinC,_C-terminal_domain


id: PF03780
description: Asp23 family, cell envelope-related function
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03780
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03780_Asp23_family,_cell_envelope-related_function


id: PF03802
description: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03802
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03802_Apo-citrate_lyase_phosphoribosyl-dephospho-CoA_transferase


id: PF03807
description: NADP oxidoreductase coenzyme F420-dependent
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03807
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03807_NADP_oxidoreductase_coenzyme_F420-dependent


id: PF03819
description: MazG nucleotide pyrophosphohydrolase domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03819
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03819_MazG_nucleotide_pyrophosphohydrolase_domain


id: PF03830
description: PTS system sorbose subfamily IIB component
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03830
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03830_PTS_system_sorbose_subfamily_IIB_component


id: PF03894
description: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03894
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03894_D-xylulose_5-phosphate/D-fructose_6-phosphate_phosphoketolase


id: PF03948
description: Ribosomal protein L9, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03948
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03948_Ribosomal_protein_L9,_C-terminal_domain


id: PF03951
description: Glutamine synthetase, beta-Grasp domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03951
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03951_Glutamine_synthetase,_beta-Grasp_domain


id: PF03989
description: DNA gyrase C-terminal domain, beta-propeller
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03989
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF03989_DNA_gyrase_C-terminal_domain,_beta-propeller


id: PF04020
description: Mycobacterial 4 TMS phage holin, superfamily IV
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04020
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04020_Mycobacterial_4_TMS_phage_holin,_superfamily_IV


id: PF04069
description: Substrate binding domain of ABC-type glycine betaine transport system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04069
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04069_Substrate_binding_domain_of_ABC-type_glycine_betaine_transport_system


id: PF04079
description: Segregation and condensation complex subunit ScpB
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04079
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04079_Segregation_and_condensation_complex_subunit_ScpB


id: PF04095
description: Nicotinate phosphoribosyltransferase (NAPRTase) family
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04095
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04095_Nicotinate_phosphoribosyltransferase_(NAPRTase)_family


id: PF04127
description: DNA / pantothenate metabolism flavoprotein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04127
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04127_DNA_/_pantothenate_metabolism_flavoprotein


id: PF04131
description: Putative N-acetylmannosamine-6-phosphate epimerase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04131
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04131_Putative_N-acetylmannosamine-6-phosphate_epimerase


id: PF04263
description: Thiamin pyrophosphokinase, catalytic domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04263
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04263_Thiamin_pyrophosphokinase,_catalytic_domain


id: PF04313
description: Type I restriction enzyme R protein N terminus (HSDR_N)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04313
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04313_Type_I_restriction_enzyme_R_protein_N_terminus_(HSDR_N)


id: PF04371
description: Porphyromonas-type peptidyl-arginine deiminase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04371
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04371_Porphyromonas-type_peptidyl-arginine_deiminase


id: PF04392
description: ABC transporter substrate binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04392
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04392_ABC_transporter_substrate_binding_protein


id: PF04464
description: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04464
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04464_CDP-Glycerol:Poly(glycerophosphate)_glycerophosphotransferase_


id: PF04488
description: Glycosyltransferase sugar-binding region containing DXD motif
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04488
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04488_Glycosyltransferase_sugar-binding_region_containing_DXD_motif___


id: PF04657
description: Putative inner membrane exporter, YdcZ
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04657
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04657_Putative_inner_membrane_exporter,_YdcZ_


id: PF04760
description: Translation initiation factor IF-2, N-terminal region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04760
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04760_Translation_initiation_factor_IF-2,_N-terminal_region


id: PF04816
description: tRNA (adenine(22)-N(1))-methyltransferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04816
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04816_tRNA_(adenine(22)-N(1))-methyltransferase


id: PF04973
description: Nicotinamide mononucleotide transporter
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04973
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF04973_Nicotinamide_mononucleotide_transporter


id: PF05066
description: HB1, ASXL, restriction endonuclease HTH domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05066
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05066_HB1,_ASXL,_restriction_endonuclease_HTH_domain


id: PF05135
description: Phage gp6-like head-tail connector protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05135
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05135_Phage_gp6-like_head-tail_connector_protein


id: PF05173
description: Dihydrodipicolinate reductase, C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05173
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05173_Dihydrodipicolinate_reductase,_C-terminus


id: PF05198
description: Translation initiation factor IF-3, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05198
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05198_Translation_initiation_factor_IF-3,_N-terminal_domain


id: PF05256
description: Uncharacterised protein family (UPF0223)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05256
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05256_Uncharacterised_protein_family_(UPF0223)


id: PF05362
description: Lon protease (S16) C-terminal proteolytic domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05362
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05362_Lon_protease_(S16)_C-terminal_proteolytic_domain


id: PF05389
description: Negative regulator of genetic competence (MecA)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05389
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05389_Negative_regulator_of_genetic_competence_(MecA)


id: PF05437
description: Branched-chain amino acid transport protein (AzlD)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05437
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05437_Branched-chain_amino_acid_transport_protein_(AzlD)


id: PF05525
description: Branched-chain amino acid transport protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05525
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05525_Branched-chain_amino_acid_transport_protein


id: PF05698
description: Bacterial trigger factor protein (TF) C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05698
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05698_Bacterial_trigger_factor_protein_(TF)_C-terminus


id: PF05728
description: Uncharacterised protein family (UPF0227)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05728
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05728_Uncharacterised_protein_family_(UPF0227)


id: PF05973
description: Phage derived protein Gp49-like (DUF891)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05973
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05973_Phage_derived_protein_Gp49-like_(DUF891)


id: PF05979
description: Bacterial protein of unknown function (DUF896)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05979
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF05979_Bacterial_protein_of_unknown_function_(DUF896)


id: PF06014
description: Bacterial protein of unknown function (DUF910)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06014
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06014_Bacterial_protein_of_unknown_function_(DUF910)


id: PF06026
description: Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06026
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06026_Ribose_5-phosphate_isomerase_A_(phosphoriboisomerase_A)


id: PF06028
description: Alpha/beta hydrolase of unknown function (DUF915)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06028
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06028_Alpha/beta_hydrolase_of_unknown_function_(DUF915)


id: PF06030
description: Bacterial protein of unknown function (DUF916)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06030
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06030_Bacterial_protein_of_unknown_function_(DUF916)


id: PF06103
description: Bacterial protein of unknown function (DUF948)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06103
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06103_Bacterial_protein_of_unknown_function_(DUF948)


id: PF06107
description: Bacterial protein of unknown function (DUF951)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06107
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06107_Bacterial_protein_of_unknown_function_(DUF951)


id: PF06124
description: Staphylococcal protein of unknown function (DUF960)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06124
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06124_Staphylococcal_protein_of_unknown_function_(DUF960)


id: PF06133
description: Control of competence regulator ComK, YlbF/YmcA
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06133
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06133_Control_of_competence_regulator_ComK,_YlbF/YmcA


id: PF06160
description: Septation ring formation regulator, EzrA
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06160
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06160_Septation_ring_formation_regulator,_EzrA_


id: PF06305
description: Lipopolysaccharide assembly protein A domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06305
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06305_Lipopolysaccharide_assembly_protein_A_domain


id: PF06779
description: Uncharacterised MFS-type transporter YbfB
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06779
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06779_Uncharacterised_MFS-type_transporter_YbfB


id: PF06857
description: Malonate decarboxylase delta subunit (MdcD)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06857
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06857_Malonate_decarboxylase_delta_subunit_(MdcD)


id: PF06970
description: Replication initiator protein A (RepA) N-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06970
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06970_Replication_initiator_protein_A_(RepA)_N-terminus


id: PF06971
description: Putative DNA-binding protein N-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06971
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06971_Putative_DNA-binding_protein_N-terminus


id: PF06983
description: 3-demethylubiquinone-9 3-methyltransferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06983
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF06983_3-demethylubiquinone-9_3-methyltransferase


id: PF07155
description: ECF-type riboflavin transporter, S component
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07155
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07155_ECF-type_riboflavin_transporter,_S_component


id: PF07261
description: Replication initiation and membrane attachment
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07261
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07261_Replication_initiation_and_membrane_attachment


id: PF07282
description: Putative transposase DNA-binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07282
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07282_Putative_transposase_DNA-binding_domain


id: PF07479
description: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07479
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07479_NAD-dependent_glycerol-3-phosphate_dehydrogenase_C-terminus


id: PF07521
description: Zn-dependent metallo-hydrolase RNA specificity domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07521
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07521_Zn-dependent_metallo-hydrolase_RNA_specificity_domain


id: PF07662
description: Na+ dependent nucleoside transporter C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07662
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07662_Na+_dependent_nucleoside_transporter_C-terminus


id: PF07664
description: Ferrous iron transport protein B C terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07664
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07664_Ferrous_iron_transport_protein_B_C_terminus


id: PF07685
description: CobB/CobQ-like glutamine amidotransferase domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07685
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07685_CobB/CobQ-like_glutamine_amidotransferase_domain


id: PF07733
description: Bacterial DNA polymerase III alpha NTPase domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07733
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07733_Bacterial_DNA_polymerase_III_alpha_NTPase_domain


id: PF07905
description: Purine catabolism regulatory protein-like family
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07905
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07905_Purine_catabolism_regulatory_protein-like_family


id: PF07963
description: Prokaryotic N-terminal methylation motif
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07963
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07963_Prokaryotic_N-terminal_methylation_motif


id: PF07992
description: Pyridine nucleotide-disulphide oxidoreductase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07992
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF07992_Pyridine_nucleotide-disulphide_oxidoreductase


id: PF08125
description: Mannitol dehydrogenase C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08125
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08125_Mannitol_dehydrogenase_C-terminal_domain


id: PF08207
description: Elongation factor P (EF-P) KOW-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08207
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08207_Elongation_factor_P_(EF-P)_KOW-like_domain


id: PF08240
description: Alcohol dehydrogenase GroES-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08240
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08240_Alcohol_dehydrogenase_GroES-like_domain


id: PF08264
description: Anticodon-binding domain of tRNA ligase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08264
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08264_Anticodon-binding_domain_of_tRNA_ligase


id: PF08267
description: Cobalamin-independent synthase, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08267
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08267_Cobalamin-independent_synthase,_N-terminal_domain


id: PF08275
description: DNA primase catalytic core, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08275
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08275_DNA_primase_catalytic_core,_N-terminal_domain


id: PF08352
description: Oligopeptide/dipeptide transporter, C-terminal region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08352
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08352_Oligopeptide/dipeptide_transporter,_C-terminal_region


id: PF08501
description: Shikimate dehydrogenase substrate binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08501
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08501_Shikimate_dehydrogenase_substrate_binding_domain


id: PF08503
description: Tetrahydrodipicolinate succinyltransferase N-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08503
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08503_Tetrahydrodipicolinate_succinyltransferase_N-terminal


id: PF08540
description: Hydroxymethylglutaryl-coenzyme A synthase C terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08540
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08540_Hydroxymethylglutaryl-coenzyme_A_synthase_C_terminal


id: PF08546
description: Ketopantoate reductase PanE/ApbA C terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08546
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08546_Ketopantoate_reductase_PanE/ApbA_C_terminal


id: PF08551
description: Eukaryotic integral membrane protein (DUF1751)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08551
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF08551_Eukaryotic_integral_membrane_protein_(DUF1751)


id: PF09168
description: X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09168
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09168_X-Prolyl_dipeptidyl_aminopeptidase_PepX,_N-terminal


id: PF09297
description: NADH pyrophosphatase zinc ribbon domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09297
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09297_NADH_pyrophosphatase_zinc_ribbon_domain


id: PF09481
description: CRISPR-associated protein Cse1 (CRISPR_cse1)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09481
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09481_CRISPR-associated_protein_Cse1_(CRISPR_cse1)


id: PF09485
description: CRISPR-associated protein Cse2 (CRISPR_cse2)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09485
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09485_CRISPR-associated_protein_Cse2_(CRISPR_cse2)


id: PF09524
description: Conserved phage C-terminus (Phg_2220_C)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09524
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09524_Conserved_phage_C-terminus_(Phg_2220_C)


id: PF09664
description: Protein of unknown function C-terminus (DUF2399)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09664
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09664_Protein_of_unknown_function_C-terminus_(DUF2399)


id: PF09682
description: Bacteriophage holin of superfamily 6 (Holin_LLH)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09682
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09682_Bacteriophage_holin_of_superfamily_6_(Holin_LLH)


id: PF09707
description: CRISPR-associated protein (Cas_Cas2CT1978)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09707
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09707_CRISPR-associated_protein_(Cas_Cas2CT1978)


id: PF09819
description: ABC-type cobalt transport system, permease component
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09819
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09819_ABC-type_cobalt_transport_system,_permease_component


id: PF09860
description: Uncharacterized protein conserved in bacteria (DUF2087)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09860
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09860_Uncharacterized_protein_conserved_in_bacteria_(DUF2087)


id: PF09902
description: Uncharacterized protein conserved in bacteria (DUF2129)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09902
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09902_Uncharacterized_protein_conserved_in_bacteria_(DUF2129)


id: PF09911
description: Uncharacterized protein conserved in bacteria (DUF2140)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF09911
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF09911_Uncharacterized_protein_conserved_in_bacteria_(DUF2140)


id: PF10009
description: Uncharacterized protein conserved in bacteria (DUF2252)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10009
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10009_Uncharacterized_protein_conserved_in_bacteria_(DUF2252)


id: PF10022
description: Uncharacterized protein conserved in bacteria (DUF2264)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10022
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10022_Uncharacterized_protein_conserved_in_bacteria_(DUF2264)


id: PF10035
description: Uncharacterized protein conserved in bacteria (DUF2179)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10035
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10035_Uncharacterized_protein_conserved_in_bacteria_(DUF2179)


id: PF10110
description: Membrane domain of glycerophosphoryl diester phosphodiesterase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10110
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10110_Membrane_domain_of_glycerophosphoryl_diester_phosphodiesterase


id: PF10140
description: WXG100 protein secretion system (Wss), protein YukC
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10140
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10140_WXG100_protein_secretion_system_(Wss),_protein_YukC


id: PF10141
description: Single-strand DNA-specific exonuclease, C terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10141
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10141_Single-strand_DNA-specific_exonuclease,_C_terminal_domain


id: PF10385
description: RNA polymerase beta subunit external 1 domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10385
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10385_RNA_polymerase_beta_subunit_external_1_domain


id: PF10410
description: DnaB-helicase binding domain of primase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10410
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10410_DnaB-helicase_binding_domain_of_primase


id: PF10412
description: Type IV secretion-system coupling protein DNA-binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10412
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10412_Type_IV_secretion-system_coupling_protein_DNA-binding_domain


id: PF10417
description: C-terminal domain of 1-Cys peroxiredoxin
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10417
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10417_C-terminal_domain_of_1-Cys_peroxiredoxin


id: PF10437
description: Bacterial lipoate protein ligase C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10437
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10437_Bacterial_lipoate_protein_ligase_C-terminus


id: PF10509
description: Galactokinase galactose-binding signature
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10509
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10509_Galactokinase_galactose-binding_signature


id: PF10555
description: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10555
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10555_Phospho-N-acetylmuramoyl-pentapeptide-transferase_signature_1_


id: PF10604
description: Polyketide cyclase / dehydrase and lipid transport
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10604
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10604_Polyketide_cyclase_/_dehydrase_and_lipid_transport


id: PF10947
description: Protein of unknown function (DUF2628)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10947
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF10947_Protein_of_unknown_function_(DUF2628)____


id: PF11490
description: DNA polymerase III polC-type N-terminus II
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF11490
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF11490_DNA_polymerase_III_polC-type_N-terminus_II


id: PF11762
description: L-arabinose isomerase C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF11762
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF11762_L-arabinose_isomerase_C-terminal_domain


id: PF11797
description: Protein of unknown function C-terminal (DUF3324)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF11797
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF11797_Protein_of_unknown_function_C-terminal_(DUF3324)


id: PF11799
description: impB/mucB/samB family C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF11799
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF11799_impB/mucB/samB_family_C-terminal_domain


id: PF12008
description: Type I restriction and modification enzyme - subunit R C terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12008
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12008_Type_I_restriction_and_modification_enzyme_-_subunit_R_C_terminal


id: PF12169
description: DNA polymerase III subunits gamma and tau domain III
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12169
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12169_DNA_polymerase_III_subunits_gamma_and_tau_domain_III


id: PF12320
description: Type 5 capsule protein repressor C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12320
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12320_Type_5_capsule_protein_repressor_C-terminal_domain


id: PF12399
description: Branched-chain amino acid ATP-binding cassette transporter
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12399
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12399_Branched-chain_amino_acid_ATP-binding_cassette_transporter


id: PF12535
description: Hydrolase of X-linked nucleoside diphosphate N terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12535
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12535_Hydrolase_of_X-linked_nucleoside_diphosphate_N_terminal_


id: PF12627
description: Probable RNA and SrmB- binding site of polymerase A
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12627
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12627_Probable_RNA_and_SrmB-_binding_site_of_polymerase_A


id: PF12769
description: 4TM region of pyridine nucleotide transhydrogenase, mitoch
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12769
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12769_4TM_region_of_pyridine_nucleotide_transhydrogenase,_mitoch


id: PF12822
description: ECF transporter, substrate-specific component
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12822
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12822_ECF_transporter,_substrate-specific_component


id: PF12850
description: Calcineurin-like phosphoesterase superfamily domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12850
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12850_Calcineurin-like_phosphoesterase_superfamily_domain


id: PF12911
description: N-terminal TM domain of oligopeptide transport permease C
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF12911
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF12911_N-terminal_TM_domain_of_oligopeptide_transport_permease_C


id: PF13090
description: Polyphosphate kinase C-terminal domain 2
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13090
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13090_Polyphosphate_kinase_C-terminal_domain_2


id: PF13231
description: Dolichyl-phosphate-mannose-protein mannosyltransferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13231
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13231_Dolichyl-phosphate-mannose-protein_mannosyltransferase


id: PF13304
description: AAA domain, putative AbiEii toxin, Type IV TA system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13304
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13304_AAA_domain,_putative_AbiEii_toxin,_Type_IV_TA_system


id: PF13306
description: BspA type Leucine rich repeat region (6 copies)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13306
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13306_BspA_type_Leucine_rich_repeat_region_(6_copies)


id: PF13367
description: PrsW family intramembrane metalloprotease
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13367
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13367_PrsW_family_intramembrane_metalloprotease


id: PF13376
description: Bacteriocin-protection, YdeI or OmpD-Associated
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13376
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13376_Bacteriocin-protection,_YdeI_or_OmpD-Associated


id: PF13377
description: Periplasmic binding protein-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13377
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13377_Periplasmic_binding_protein-like_domain


id: PF13416
description: Bacterial extracellular solute-binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13416
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13416_Bacterial_extracellular_solute-binding_protein


id: PF13531
description: Bacterial extracellular solute-binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13531
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13531_Bacterial_extracellular_solute-binding_protein


id: PF13556
description: PucR C-terminal helix-turn-helix domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13556
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13556_PucR_C-terminal_helix-turn-helix_domain


id: PF13636
description: RNA-binding PUA-like domain of methyltransferase RsmF
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13636
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13636_RNA-binding_PUA-like_domain_of_methyltransferase_RsmF


id: PF13669
description: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13669
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13669_Glyoxalase/Bleomycin_resistance_protein/Dioxygenase_superfamily


id: PF13735
description: tRNA nucleotidyltransferase domain 2 putative
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13735
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13735_tRNA_nucleotidyltransferase_domain_2_putative


id: PF13738
description: Pyridine nucleotide-disulphide oxidoreductase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13738
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13738_Pyridine_nucleotide-disulphide_oxidoreductase


id: PF13787
description: Protein of unknown function with HXXEE motif
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13787
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF13787_Protein_of_unknown_function_with_HXXEE_motif


id: PF14278
description: Transcriptional regulator C-terminal region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14278
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF14278_Transcriptional_regulator_C-terminal_region


id: PF14480
description: DNA polymerase III polC-type N-terminus I
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14480
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF14480_DNA_polymerase_III_polC-type_N-terminus_I


id: PF14572
description: Phosphoribosyl synthetase-associated domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14572
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF14572_Phosphoribosyl_synthetase-associated_domain


id: PF14602
description: Hexapeptide repeat of succinyl-transferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14602
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF14602_Hexapeptide_repeat_of_succinyl-transferase


id: PF14659
description: Phage integrase, N-terminal SAM-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14659
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF14659_Phage_integrase,_N-terminal_SAM-like_domain


id: PF14667
description: Polysaccharide biosynthesis C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14667
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF14667_Polysaccharide_biosynthesis_C-terminal_domain


id: PF14691
description: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14691
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF14691_Dihydroprymidine_dehydrogenase_domain_II,_4Fe-4S_cluster


id: PF14748
description: Pyrroline-5-carboxylate reductase dimerisation
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14748
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF14748_Pyrroline-5-carboxylate_reductase_dimerisation


id: PF14833
description: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF14833
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF14833_NAD-binding_of_NADP-dependent_3-hydroxyisobutyrate_dehydrogenase


id: PF15738
description: Bacterial toxin of type II toxin-antitoxin system, YafQ
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF15738
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF15738_Bacterial_toxin_of_type_II_toxin-antitoxin_system,_YafQ_


id: PF15781
description: ParE-like toxin of type II bacterial toxin-antitoxin system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF15781
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF15781_ParE-like_toxin_of_type_II_bacterial_toxin-antitoxin_system


id: PF16198
description: tRNA pseudouridylate synthase B C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16198
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16198_tRNA_pseudouridylate_synthase_B_C-terminal_domain


id: PF16320
description: Ribosomal protein L7/L12 dimerisation domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16320
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16320_Ribosomal_protein_L7/L12_dimerisation_domain


id: PF16321
description: Sigma 54 modulation/S30EA ribosomal protein C terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16321
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16321_Sigma_54_modulation/S30EA_ribosomal_protein_C_terminus


id: PF16656
description: Purple acid Phosphatase, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16656
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16656_Purple_acid_Phosphatase,_N-terminal_domain


id: PF16658
description: Class II release factor RF3, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16658
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16658_Class_II_release_factor_RF3,_C-terminal_domain


id: PF16859
description: Tetracyclin repressor-like, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16859
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16859_Tetracyclin_repressor-like,_C-terminal_domain


id: PF16874
description: Glycosyl hydrolase family 36 C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16874
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16874_Glycosyl_hydrolase_family_36_C-terminal_domain


id: PF16875
description: Glycosyl hydrolase family 36 N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16875
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16875_Glycosyl_hydrolase_family_36_N-terminal_domain


id: PF16916
description: Dimerisation domain of Zinc Transporter
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16916
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16916_Dimerisation_domain_of_Zinc_Transporter


id: PF16943
description: Cag pathogenicity island, type IV secretory system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF16943
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF16943_Cag_pathogenicity_island,_type_IV_secretory_system


id: PF17125
description: N-terminal domain of 16S rRNA methyltransferase RsmF
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17125
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF17125_N-terminal_domain_of_16S_rRNA_methyltransferase_RsmF


id: PF17126
description: RsmF rRNA methyltransferase first C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17126
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF17126_RsmF_rRNA_methyltransferase_first_C-terminal_domain


id: PF17136
description: Ribosomal proteins 50S L24/mitochondrial 39S L24
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17136
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF17136_Ribosomal_proteins_50S_L24/mitochondrial_39S_L24


id: PF17189
description: Glycosyl hydrolase family 30 beta sandwich domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17189
name:
  Protein Domains (Pfam).STRING_v12.0_1423715_STRINGid_PF17189_Glycosyl_hydrolase_family_30_beta_sandwich_domain


id: SM00046
description: Diacylglycerol kinase catalytic domain (presumed)
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00046
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00046_Diacylglycerol_kinase_catalytic_domain_(presumed)


id: SM00052
description: Putative diguanylate phosphodiesterase
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00052
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00052_Putative_diguanylate_phosphodiesterase


id: SM00062
description: Bacterial periplasmic substrate-binding proteins
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00062
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00062_Bacterial_periplasmic_substrate-binding_proteins


id: SM00065
description: Domain present in phytochromes and cGMP-specific phosphodiesterases.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00065
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00065_Domain_present_in_phytochromes_and_cGMP-specific_phosphodiesterases.


id: SM00086
description: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00086
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00086_Motif_C-terminal_to_PAS_motifs_(likely_to_contribute_to_PAS_structural_domain)


id: SM00100
description: Cyclic nucleotide-monophosphate binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00100
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00100_Cyclic_nucleotide-monophosphate_binding_domain


id: SM00116
description: Domain in cystathionine beta-synthase and other proteins.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00116
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00116_Domain_in_cystathionine_beta-synthase_and_other_proteins.


id: SM00226
description: Low molecular weight phosphatase family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00226
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00226_Low_molecular_weight_phosphatase_family


id: SM00228
description: Domain present in PSD-95, Dlg, and ZO-1/2.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00228
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00228_Domain_present_in_PSD-95,_Dlg,_and_ZO-1/2.


id: SM00271
description: DnaJ molecular chaperone homology domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00271
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00271_DnaJ_molecular_chaperone_homology_domain


id: SM00278
description: Helix-hairpin-helix DNA-binding motif class 1
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00278
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00278_Helix-hairpin-helix_DNA-binding_motif_class_1


id: SM00279
description: Helix-hairpin-helix class 2 (Pol1 family) motifs
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00279
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00279_Helix-hairpin-helix_class_2_(Pol1_family)_motifs


id: SM00283
description: Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00283
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00283_Methyl-accepting_chemotaxis-like_domains_(chemotaxis_sensory_transducer).


id: SM00304
description: HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00304
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00304_HAMP_(Histidine_kinases,_Adenylyl_cyclases,_Methyl_binding_proteins,_Phosphatases)_domain


id: SM00316
description: Ribosomal protein S1-like RNA-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00316
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00316_Ribosomal_protein_S1-like_RNA-binding_domain


id: SM00342
description: Helix_turn_helix, arabinose operon control protein
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00342
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00342_Helix_turn_helix,_arabinose_operon_control_protein


id: SM00345
description: Helix_turn_helix gluconate operon transcriptional repressor
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00345
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00345_Helix_turn_helix_gluconate_operon_transcriptional_repressor


id: SM00347
description: Helix_turn_helix multiple antibiotic resistance protein
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00347
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00347_Helix_turn_helix_multiple_antibiotic_resistance_protein


id: SM00354
description: Helix_turn _helix lactose operon repressor
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00354
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00354_Helix_turn__helix_lactose_operon_repressor


id: SM00382
description: ATPases associated with a variety of cellular activities
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00382
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00382_ATPases_associated_with_a_variety_of_cellular_activities


id: SM00411
description: Bacterial (prokaryotic) histone like domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00411
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00411_Bacterial_(prokaryotic)_histone_like_domain


id: SM00418
description: Helix_turn_helix, Arsenical Resistance Operon Repressor
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00418
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00418_Helix_turn_helix,_Arsenical_Resistance_Operon_Repressor


id: SM00419
description: Helix_turn_helix, cAMP Regulatory protein
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00419
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00419_Helix_turn_helix,_cAMP_Regulatory_protein


id: SM00420
description: Helix_turn_helix, Deoxyribose operon repressor
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00420
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00420_Helix_turn_helix,_Deoxyribose_operon_repressor


id: SM00436
description: Bacterial DNA topoisomeraes I ATP-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00436
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00436_Bacterial_DNA_topoisomeraes_I_ATP-binding_domain


id: SM00437
description: Bacterial DNA topoisomerase I DNA-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00437
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00437_Bacterial_DNA_topoisomerase_I_DNA-binding_domain


id: SM00471
description: Metal dependent phosphohydrolases with conserved HD motif.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00471
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00471_Metal_dependent_phosphohydrolases_with_conserved_HD_motif.


id: SM00479
description: Exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00479
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00479_Exonuclease_domain_in_DNA-polymerase_alpha_and_epsilon_chain,_ribonuclease_T_and_other_exonucleases


id: SM00481
description: DNA polymerase alpha chain like domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00481
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00481_DNA_polymerase_alpha_chain_like_domain


id: SM00490
description: Helicase superfamily c-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00490
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00490_Helicase_superfamily_c-terminal_domain


id: SM00493
description: Topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00493
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00493_Topoisomerases,_DnaG-type_primases,_OLD_family_nucleases_and_RecR_proteins


id: SM00529
description: Helix-turn-helix diphteria tox regulatory element
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00529
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00529_Helix-turn-helix_diphteria_tox_regulatory_element


id: SM00530
description: Helix-turn-helix XRE-family like proteins
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00530
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00530_Helix-turn-helix_XRE-family_like_proteins


id: SM00533
description: DNA-binding domain of DNA mismatch repair MUTS family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00533
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00533_DNA-binding_domain_of_DNA_mismatch_repair_MUTS_family


id: SM00534
description: ATPase domain of DNA mismatch repair MUTS family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00534
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00534_ATPase_domain_of_DNA_mismatch_repair_MUTS_family


id: SM00670
description: Large family of predicted nucleotide-binding domains
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00670
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00670_Large_family_of_predicted_nucleotide-binding_domains


id: SM00732
description: Likely ribonuclease with RNase H fold.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00732
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00732_Likely_ribonuclease_with_RNase_H_fold.


id: SM00738
description: In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00738
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00738_In_Spt5p,_this_domain_may_confer_affinity_for_Spt4p._It_possesses_a_RNP-like_fold.


id: SM00739
description: KOW (Kyprides, Ouzounis, Woese) motif.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00739
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00739_KOW_(Kyprides,_Ouzounis,_Woese)_motif.


id: SM00760
description: Bacterial dnaA protein helix-turn-helix domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00760
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00760_Bacterial_dnaA_protein_helix-turn-helix_domain


id: SM00764
description: Citrate lyase ligase C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00764
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00764_Citrate_lyase_ligase_C-terminal_domain


id: SM00840
description: This DALR domain is found in cysteinyl-tRNA-synthetases.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00840
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00840_This_DALR_domain_is_found_in_cysteinyl-tRNA-synthetases.


id: SM00843
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00843
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00843_This_domain_directs_oriented_DNA_translocation_and_forms_a_winged_helix_structure._Mutated_proteins_with_substitutions_in_the_FtsK_gamma_DNA-recognition_helix_are_impaired_in_DNA_binding.

description:
  This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


id: SM00846
description: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00846
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00846_Glyceraldehyde_3-phosphate_dehydrogenase,_NAD_binding_domain


id: SM00854
description: Bacterial capsule synthesis protein PGA_cap
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00854
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00854_Bacterial_capsule_synthesis_protein_PGA_cap


id: SM00859
description: Semialdehyde dehydrogenase, NAD binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00859
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00859_Semialdehyde_dehydrogenase,_NAD_binding_domain


id: SM00861
description: Transketolase, pyrimidine binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00861
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00861_Transketolase,_pyrimidine_binding_domain


id: SM00862
description: Transcriptional regulatory protein, C terminal
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00862
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00862_Transcriptional_regulatory_protein,_C_terminal


id: SM00863
description: Threonyl and Alanyl tRNA synthetase second additional domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00863
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00863_Threonyl_and_Alanyl_tRNA_synthetase_second_additional_domain


id: SM00865
description: Tubulin/FtsZ family, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00865
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00865_Tubulin/FtsZ_family,_C-terminal_domain


id: SM00866
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00866
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00866_The_UbiC_transcription_regulator-associated_(UTRA)_domain_is_a_conserved_ligand-binding_domain_that_has_a_similar_fold_to_PUBMED:12757941._It_is_believed_to_modulate_activity_of_bacterial_transcription_factors_in_response_to_binding_small_molecules.

description:
  The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain that has a similar fold to PUBMED:12757941. It is believed to modulate activity of bacterial transcription factors in response to binding small molecules.


id: SM00870
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00870
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00870_Asparaginase,_which_is_found_in_various_plant,_animal_and_bacterial_cells,_catalyses_the_deamination_of_asparagine_to_yield_aspartic_acid_and_an_ammonium_ion,_resulting_in_a_depletion_of_free_circulatory_asparagine_in_plasma_PUBMED:3026924._The_...

description:
  Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The ...


id: SM00895
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00895
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00895_This_entry_represents_the_C-terminal_ligand_binding_domain_of_many_members_of_the_GntR_family._This_domain_probably_binds_to_a_range_of_effector_molecules_that_regulate_the_transcription_of_genes_through_the_action_of_the_N-terminal_DNA-binding_...

description:
  This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding ...


id: SM00896
description: Ferredoxin-fold anticodon binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00896
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00896_Ferredoxin-fold_anticodon_binding_domain


id: SM00898
description: Formamidopyrimidine-DNA glycosylase N-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00898
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00898_Formamidopyrimidine-DNA_glycosylase_N-terminal_domain


id: SM00899
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00899
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00899_This_entry_represents_the_core_domain_of_the_ferrous_iron_(Fe2+)_transport_protein_FeoA_found_in_bacteria._This_domain_also_occurs_at_the_C-terminus_in_related_proteins._The_transporter_Feo_is_composed_of_three_proteins:_FeoA_a_small,_soluble_...

description:
  This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C-terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble ...


id: SM00900
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00900
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00900_This_conserved_region_includes_the_FMN-binding_site_of_the_NqrC_protein_as_well_as_the_NosR_and_NirI_regulatory_proteins.

description:
  This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins.


id: SM00930
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00930
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00930_This_domain_is_found_at_the_C-terminus_of_ABC_transporter_proteins_involved_in_D-methionine_transport_as_well_as_a_number_of_ferredoxin-like_proteins._This_domain_is_likely_to_act_as_a_substrate_binding_domain._The_domain_has_been_named_after_a_...

description:
  This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a ...


id: SM00934
description: Orotidine 5-phosphate decarboxylase / HUMPS family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00934
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00934_Orotidine_5-phosphate_decarboxylase_/_HUMPS_family


id: SM00936
description: Penicillin-binding protein 5, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00936
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00936_Penicillin-binding_protein_5,_C-terminal_domain


id: SM00937
description: This domain is found in peptide chain release factors.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00937
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00937_This_domain_is_found_in_peptide_chain_release_factors.


id: SM00939
description: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00939
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00939_X-Pro_dipeptidyl-peptidase_C-terminal_non-catalytic_domain


id: SM00941
description: Pyrimidine nucleoside phosphorylase C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00941
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00941_Pyrimidine_nucleoside_phosphorylase_C-terminal_domain


id: SM00955
description: This domain is the catalytic domain of ribonuclease II.PUBMED:16806266
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00955
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00955_This_domain_is_the_catalytic_domain_of_ribonuclease_II.PUBMED:16806266


id: SM00956
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00956
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00956_This_DNA-binding_domain_is_found_in_the_RecQ_helicase_among_others_and_has_a_helix-turn-helix_structure._The_RQC_domain,_found_only_in_RecQ_family_enzymes,_is_a_high_affinity_G4_DNA_binding_domain_PUBMED:16530788.

description:
  This DNA-binding domain is found in the RecQ helicase among others and has a helix-turn-helix structure. The RQC domain, found only in RecQ family enzymes, is a high affinity G4 DNA binding domain PUBMED:16530788.


id: SM00963
description: SRP54-type protein, helical bundle domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00963
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00963_SRP54-type_protein,_helical_bundle_domain


id: SM00967
description: RNA 2-O ribose methyltransferase substrate binding
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00967
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00967_RNA_2-O_ribose_methyltransferase_substrate_binding


id: SM00981
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00981
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00981_The_THUMP_domain_is_named_after_after_thiouridine_synthases,_methylases_and_PSUSs_PUBMED:11295541._The_THUMP_domain_consists_of_about_110_amino_acid_residues._The_structure_of_ThiI_reveals_that_the_THUMP_has_a_fold_unlike_that_of_previously_...

description:
  The THUMP domain is named after after thiouridine synthases, methylases and PSUSs PUBMED:11295541. The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously ...


id: SM00982
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00982
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00982_This_domain_is_found_in_proteins_necessary_for_strand-specific_repair_in_DNA_such_as_TRCF_in_Escherichia_coli._A_lesion_in_the_template_strand_blocks_the_RNA_polymerase_complex_(RNAP)._The_RNAP-DNA-RNA_complex_is_specifically_recognised_by_the_...

description:
  This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the ...


id: SM00983
description: Thiamin pyrophosphokinase, vitamin B1 binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00983
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00983_Thiamin_pyrophosphokinase,_vitamin_B1_binding_domain


id: SM00987
description: UreE urease accessory protein, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00987
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM00987_UreE_urease_accessory_protein,_C-terminal_domain


id: SM01002
description: Alanine dehydrogenase/PNT, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01002
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01002_Alanine_dehydrogenase/PNT,_C-terminal_domain


id: SM01003
description: Alanine dehydrogenase/PNT, N-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01003
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01003_Alanine_dehydrogenase/PNT,_N-terminal_domain


id: SM01007
description: Class II Aldolase and Adducin N-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01007
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01007_Class_II_Aldolase_and_Adducin_N-terminal_domain


id: SM01016
description: Arginyl tRNA synthetase N terminal dom
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01016
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01016_Arginyl_tRNA_synthetase_N_terminal_dom


id: SM01086
description: C-terminal, D2-small domain, of ClpB protein
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01086
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01086_C-terminal,_D2-small_domain,_of_ClpB_protein


id: SM01096
description: Carbamoyl-phosphate synthetase large chain, oligomerisation domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01096
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01096_Carbamoyl-phosphate_synthetase_large_chain,_oligomerisation_domain


id: SM01097
description: Carbamoyl-phosphate synthase small chain, CPSase domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01097
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01097_Carbamoyl-phosphate_synthase_small_chain,_CPSase_domain


id: SM01101
description: This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01101
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01101_This_domain_forms_an_anti-parallel_beta_strand_structure_with_flanking_alpha_helical_regions.


id: SM01103
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01103
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01103_Escherichia_coli_YhbY_is_associated_with_pre-50S_ribosomal_subunits,_which_implies_a_function_in_ribosome_assembly._GFP_fused_to_a_single-domain_CRM_protein_from_maize_localises_to_the_nucleolus,_suggesting_that_an_analogous_activity_may_have_been_...

description:
  Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been ...


id: SM01117
description: Cytochrome b5-like Heme/Steroid binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01117
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01117_Cytochrome_b5-like_Heme/Steroid_binding_domain


id: SM01120
description: This domain is the predicted phosphatase domain of the dihydroxyacetone kinase family.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01120
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01120_This_domain_is_the_predicted_phosphatase_domain_of_the_dihydroxyacetone_kinase_family.


id: SM01121
description: This is the kinase domain of the dihydroxyacetone kinase family.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01121
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01121_This_is_the_kinase_domain_of_the_dihydroxyacetone_kinase_family.


id: SM01131
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01131
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01131_This_domain_is_often_found_adjacent_to_the_DHH_domain_PF01368_and_is_called_DHHA2_for_DHH_associated_domain._This_domain_is_diagnostic_of_DHH_subfamily_2_members_(PUBMED:9478130)._The_domain_is_about_120_residues_long_and_contains_a_conserved_DXK_...

description:
  This domain is often found adjacent to the DHH domain PF01368 and is called DHHA2 for DHH associated domain. This domain is diagnostic of DHH subfamily 2 members (PUBMED:9478130). The domain is about 120 residues long and contains a conserved DXK ...


id: SM01230
description: Glutamine synthetase, catalytic domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01230
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01230_Glutamine_synthetase,_catalytic_domain


id: SM01232
description: Formamidopyrimidine-DNA glycosylase H2TH domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01232
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01232_Formamidopyrimidine-DNA_glycosylase_H2TH_domain


id: SM01234
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01234
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01234_This_domain_has_haemolytic_activity_(PMID:19306042)._It_is_found_in_short_(73-103_amino_acid)_proteins_and_contains_three_conserved_cysteine_residues.

description:
  This domain has haemolytic activity (PMID:19306042). It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.


id: SM01240
description: IMP dehydrogenase / GMP reductase domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01240
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01240_IMP_dehydrogenase_/_GMP_reductase_domain


id: SM01245
description: This domain is found at the N-terminus of jag proteins.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01245
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01245_This_domain_is_found_at_the_N-terminus_of_jag_proteins.


id: SM01340
description: DNA mismatch repair protein, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01340
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01340_DNA_mismatch_repair_protein,_C-terminal_domain


id: SM01350
description: 6-phosphogluconate dehydrogenase, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01350
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01350_6-phosphogluconate_dehydrogenase,_C-terminal_domain


id: SM01382
description: Ribosomal Proteins L2, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01382
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01382_Ribosomal_Proteins_L2,_C-terminal_domain


id: SM01383
description: Ribosomal Proteins L2, RNA binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01383
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01383_Ribosomal_Proteins_L2,_RNA_binding_domain


id: SM01390
description: Ribosomal protein S4/S9 N-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01390
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01390_Ribosomal_protein_S4/S9_N-terminal_domain


id: SM01400
description: N-terminal domain of ribose phosphate pyrophosphokinase
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01400
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01400_N-terminal_domain_of_ribose_phosphate_pyrophosphokinase


id: SM01468
description: HUH conjugative element mobility domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01468
name:
  Protein Domains (SMART).STRING_v12.0_1423715_STRINGid_SM01468_HUH_conjugative_element_mobility_domain


