# pathwayInfo

id: PF00905
description: Penicillin binding protein transpeptidase domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF00905
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF00905_Penicillin_binding_protein_transpeptidase_domain


id: PF01035
description: 6-O-methylguanine DNA methyltransferase, DNA binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01035
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01035_6-O-methylguanine_DNA_methyltransferase,_DNA_binding_domain


id: PF01041
description: DegT/DnrJ/EryC1/StrS aminotransferase family
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01041
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01041_DegT/DnrJ/EryC1/StrS_aminotransferase_family


id: PF01075
description: Glycosyltransferase family 9 (heptosyltransferase)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01075
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01075_Glycosyltransferase_family_9_(heptosyltransferase)


id: PF01135
description: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01135
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01135_Protein-L-isoaspartate(D-aspartate)_O-methyltransferase_(PCMT)


id: PF01161
description: Phosphatidylethanolamine-binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01161
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01161_Phosphatidylethanolamine-binding_protein


id: PF01255
description: Putative undecaprenyl diphosphate synthase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01255
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01255_Putative_undecaprenyl_diphosphate_synthase


id: PF01258
description: Prokaryotic dksA/traR C4-type zinc finger
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01258
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01258_Prokaryotic_dksA/traR_C4-type_zinc_finger


id: PF01272
description: Transcription elongation factor, GreA/GreB, C-term
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01272
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01272_Transcription_elongation_factor,_GreA/GreB,_C-term


id: PF01281
description: Ribosomal protein L9, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01281
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01281_Ribosomal_protein_L9,_N-terminal_domain


id: PF01370
description: NAD dependent epimerase/dehydratase family
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01370
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01370_NAD_dependent_epimerase/dehydratase_family


id: PF01396
description: Topoisomerase DNA binding C4 zinc finger
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01396
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01396_Topoisomerase_DNA_binding_C4_zinc_finger


id: PF01409
description: tRNA synthetases class II core domain (F)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01409
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01409_tRNA_synthetases_class_II_core_domain_(F)


id: PF01420
description: Type I restriction modification DNA specificity domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01420
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01420_Type_I_restriction_modification_DNA_specificity_domain


id: PF01490
description: Transmembrane amino acid transporter protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01490
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01490_Transmembrane_amino_acid_transporter_protein


id: PF01832
description: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01832
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01832_Mannosyl-glycoprotein_endo-beta-N-acetylglucosaminidase


id: PF01978
description: Sugar-specific transcriptional regulator TrmB
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF01978
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF01978_Sugar-specific_transcriptional_regulator_TrmB


id: PF02075
description: Crossover junction endodeoxyribonuclease RuvC
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02075
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02075_Crossover_junction_endodeoxyribonuclease_RuvC


id: PF02367
description: Threonylcarbamoyl adenosine biosynthesis protein TsaE
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02367
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02367_Threonylcarbamoyl_adenosine_biosynthesis_protein_TsaE


id: PF02403
description: Seryl-tRNA synthetase N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02403
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02403_Seryl-tRNA_synthetase_N-terminal_domain


id: PF02482
description: Sigma 54 modulation protein / S30EA ribosomal protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02482
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02482_Sigma_54_modulation_protein_/_S30EA_ribosomal_protein


id: PF02683
description: Cytochrome C biogenesis protein transmembrane region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02683
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02683_Cytochrome_C_biogenesis_protein_transmembrane_region


id: PF02775
description: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02775
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02775_Thiamine_pyrophosphate_enzyme,_C-terminal_TPP_binding_domain


id: PF02776
description: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02776
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02776_Thiamine_pyrophosphate_enzyme,_N-terminal_TPP_binding_domain


id: PF02777
description: Iron/manganese superoxide dismutases, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02777
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02777_Iron/manganese_superoxide_dismutases,_C-terminal_domain


id: PF02812
description: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02812
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02812_Glu/Leu/Phe/Val_dehydrogenase,_dimerisation_domain


id: PF02861
description: Clp amino terminal domain, pathogenicity island component
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02861
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02861_Clp_amino_terminal_domain,_pathogenicity_island_component


id: PF02867
description: Ribonucleotide reductase, barrel domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02867
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02867_Ribonucleotide_reductase,_barrel_domain


id: PF02875
description: Mur ligase family, glutamate ligase domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02875
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02875_Mur_ligase_family,_glutamate_ligase_domain


id: PF02882
description: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02882
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02882_Tetrahydrofolate_dehydrogenase/cyclohydrolase,_NAD(P)-binding_domain


id: PF02912
description: Aminoacyl tRNA synthetase class II, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF02912
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF02912_Aminoacyl_tRNA_synthetase_class_II,_N-terminal_domain


id: PF03033
description: Glycosyltransferase family 28 N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03033
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF03033_Glycosyltransferase_family_28_N-terminal_domain


id: PF03449
description: Transcription elongation factor, N-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03449
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF03449_Transcription_elongation_factor,_N-terminal


id: PF03706
description: Lysylphosphatidylglycerol synthase TM region
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03706
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF03706_Lysylphosphatidylglycerol_synthase_TM_region


id: PF03717
description: Penicillin-binding Protein dimerisation domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03717
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF03717_Penicillin-binding_Protein_dimerisation_domain


id: PF03948
description: Ribosomal protein L9, C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03948
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF03948_Ribosomal_protein_L9,_C-terminal_domain


id: PF03989
description: DNA gyrase C-terminal domain, beta-propeller
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF03989
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF03989_DNA_gyrase_C-terminal_domain,_beta-propeller


id: PF04041
description: beta-1,4-mannooligosaccharide phosphorylase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04041
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF04041_beta-1,4-mannooligosaccharide_phosphorylase


id: PF04101
description: Glycosyltransferase family 28 C-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF04101
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF04101_Glycosyltransferase_family_28_C-terminal_domain


id: PF05016
description: ParE toxin of type II toxin-antitoxin system, parDE
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05016
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF05016_ParE_toxin_of_type_II_toxin-antitoxin_system,_parDE


id: PF05157
description: Type II secretion system (T2SS), protein E, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05157
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF05157_Type_II_secretion_system_(T2SS),_protein_E,_N-terminal_domain


id: PF05198
description: Translation initiation factor IF-3, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05198
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF05198_Translation_initiation_factor_IF-3,_N-terminal_domain


id: PF05698
description: Bacterial trigger factor protein (TF) C-terminus
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF05698
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF05698_Bacterial_trigger_factor_protein_(TF)_C-terminus


id: PF06415
description: BPG-independent PGAM N-terminus (iPGM_N)
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06415
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF06415_BPG-independent_PGAM_N-terminus_(iPGM_N)


id: PF06750
description: Bacterial Peptidase A24 N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06750
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF06750_Bacterial_Peptidase_A24_N-terminal_domain


id: PF06769
description: YoeB-like toxin of bacterial type II toxin-antitoxin system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF06769
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF06769_YoeB-like_toxin_of_bacterial_type_II_toxin-antitoxin_system


id: PF07521
description: Zn-dependent metallo-hydrolase RNA specificity domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07521
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF07521_Zn-dependent_metallo-hydrolase_RNA_specificity_domain


id: PF07733
description: Bacterial DNA polymerase III alpha NTPase domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07733
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF07733_Bacterial_DNA_polymerase_III_alpha_NTPase_domain


id: PF07927
description: HicA toxin of bacterial toxin-antitoxin,
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07927
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF07927_HicA_toxin_of_bacterial_toxin-antitoxin,_


id: PF07963
description: Prokaryotic N-terminal methylation motif
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07963
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF07963_Prokaryotic_N-terminal_methylation_motif


id: PF07992
description: Pyridine nucleotide-disulphide oxidoreductase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF07992
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF07992_Pyridine_nucleotide-disulphide_oxidoreductase


id: PF08207
description: Elongation factor P (EF-P) KOW-like domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08207
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF08207_Elongation_factor_P_(EF-P)_KOW-like_domain


id: PF08264
description: Anticodon-binding domain of tRNA ligase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08264
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF08264_Anticodon-binding_domain_of_tRNA_ligase


id: PF08275
description: DNA primase catalytic core, N-terminal domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08275
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF08275_DNA_primase_catalytic_core,_N-terminal_domain


id: PF08843
description: Nucleotidyl transferase AbiEii toxin, Type IV TA system
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF08843
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF08843_Nucleotidyl_transferase_AbiEii_toxin,_Type_IV_TA_system


id: PF10385
description: RNA polymerase beta subunit external 1 domain
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF10385
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF10385_RNA_polymerase_beta_subunit_external_1_domain


id: PF13231
description: Dolichyl-phosphate-mannose-protein mannosyltransferase
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13231
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF13231_Dolichyl-phosphate-mannose-protein_mannosyltransferase


id: PF13335
description: Magnesium chelatase, subunit ChlI C-terminal
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13335
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF13335_Magnesium_chelatase,_subunit_ChlI_C-terminal


id: PF13367
description: PrsW family intramembrane metalloprotease
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13367
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF13367_PrsW_family_intramembrane_metalloprotease


id: PF13416
description: Bacterial extracellular solute-binding protein
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13416
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF13416_Bacterial_extracellular_solute-binding_protein


id: PF13491
description: 4TM region of DNA translocase FtsK/SpoIIIE
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF13491
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF13491_4TM_region_of_DNA_translocase_FtsK/SpoIIIE


id: PF15738
description: Bacterial toxin of type II toxin-antitoxin system, YafQ
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF15738
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF15738_Bacterial_toxin_of_type_II_toxin-antitoxin_system,_YafQ_


id: PF17136
description: Ribosomal proteins 50S L24/mitochondrial 39S L24
memo: https://www.ebi.ac.uk/interpro/entry/pfam/PF17136
name:
  Protein Domains (Pfam).STRING_v12.0_1618869_STRINGid_PF17136_Ribosomal_proteins_50S_L24/mitochondrial_39S_L24


id: SM00089
description: Repeats in polycystic kidney disease 1 (PKD1) and other proteins
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00089
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00089_Repeats_in_polycystic_kidney_disease_1_(PKD1)_and_other_proteins


id: SM00228
description: Domain present in PSD-95, Dlg, and ZO-1/2.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00228
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00228_Domain_present_in_PSD-95,_Dlg,_and_ZO-1/2.


id: SM00271
description: DnaJ molecular chaperone homology domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00271
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00271_DnaJ_molecular_chaperone_homology_domain


id: SM00278
description: Helix-hairpin-helix DNA-binding motif class 1
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00278
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00278_Helix-hairpin-helix_DNA-binding_motif_class_1


id: SM00279
description: Helix-hairpin-helix class 2 (Pol1 family) motifs
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00279
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00279_Helix-hairpin-helix_class_2_(Pol1_family)_motifs


id: SM00316
description: Ribosomal protein S1-like RNA-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00316
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00316_Ribosomal_protein_S1-like_RNA-binding_domain


id: SM00382
description: ATPases associated with a variety of cellular activities
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00382
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00382_ATPases_associated_with_a_variety_of_cellular_activities


id: SM00411
description: Bacterial (prokaryotic) histone like domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00411
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00411_Bacterial_(prokaryotic)_histone_like_domain


id: SM00436
description: Bacterial DNA topoisomeraes I ATP-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00436
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00436_Bacterial_DNA_topoisomeraes_I_ATP-binding_domain


id: SM00437
description: Bacterial DNA topoisomerase I DNA-binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00437
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00437_Bacterial_DNA_topoisomerase_I_DNA-binding_domain


id: SM00471
description: Metal dependent phosphohydrolases with conserved HD motif.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00471
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00471_Metal_dependent_phosphohydrolases_with_conserved_HD_motif.


id: SM00481
description: DNA polymerase alpha chain like domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00481
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00481_DNA_polymerase_alpha_chain_like_domain


id: SM00493
description: Topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00493
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00493_Topoisomerases,_DnaG-type_primases,_OLD_family_nucleases_and_RecR_proteins


id: SM00530
description: Helix-turn-helix XRE-family like proteins
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00530
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00530_Helix-turn-helix_XRE-family_like_proteins


id: SM00562
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00562
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00562_These_are_enzymes_that_catalyze_nonsubstrate_specific_conversions_of_nucleoside_diphosphates_to_nucleoside_triphosphates._These_enzymes_play_important_roles_in_bacterial_growth,_signal_transduction_and_pathogenicity.

description:
  These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.


id: SM00729
description: Elongator protein 3, MiaB family, Radical SAM
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00729
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00729_Elongator_protein_3,_MiaB_family,_Radical_SAM


id: SM00732
description: Likely ribonuclease with RNase H fold.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00732
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00732_Likely_ribonuclease_with_RNase_H_fold.


id: SM00738
description: In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00738
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00738_In_Spt5p,_this_domain_may_confer_affinity_for_Spt4p._It_possesses_a_RNP-like_fold.


id: SM00739
description: KOW (Kyprides, Ouzounis, Woese) motif.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00739
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00739_KOW_(Kyprides,_Ouzounis,_Woese)_motif.


id: SM00756
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00756
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00756_Family_of_likely_enzymes_that_includes_the_catalytic_subunit_of_vitamin_K_epoxide_reductase._Bacterial_homologues_are_fused_to_members_of_the_thioredoxin_family_of_oxidoreductases.

description:
  Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.


id: SM00760
description: Bacterial dnaA protein helix-turn-helix domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00760
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00760_Bacterial_dnaA_protein_helix-turn-helix_domain


id: SM00839
description: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00839
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00839_Glutamate/Leucine/Phenylalanine/Valine_dehydrogenase


id: SM00840
description: This DALR domain is found in cysteinyl-tRNA-synthetases.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00840
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00840_This_DALR_domain_is_found_in_cysteinyl-tRNA-synthetases.


id: SM00843
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00843
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00843_This_domain_directs_oriented_DNA_translocation_and_forms_a_winged_helix_structure._Mutated_proteins_with_substitutions_in_the_FtsK_gamma_DNA-recognition_helix_are_impaired_in_DNA_binding.

description:
  This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


id: SM00854
description: Bacterial capsule synthesis protein PGA_cap
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00854
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00854_Bacterial_capsule_synthesis_protein_PGA_cap


id: SM00861
description: Transketolase, pyrimidine binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00861
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00861_Transketolase,_pyrimidine_binding_domain


id: SM00863
description: Threonyl and Alanyl tRNA synthetase second additional domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00863
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00863_Threonyl_and_Alanyl_tRNA_synthetase_second_additional_domain


id: SM00865
description: Tubulin/FtsZ family, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00865
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00865_Tubulin/FtsZ_family,_C-terminal_domain


id: SM00896
description: Ferredoxin-fold anticodon binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00896
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00896_Ferredoxin-fold_anticodon_binding_domain


id: SM00898
description: Formamidopyrimidine-DNA glycosylase N-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00898
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00898_Formamidopyrimidine-DNA_glycosylase_N-terminal_domain


id: SM00937
description: This domain is found in peptide chain release factors.
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00937
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM00937_This_domain_is_found_in_peptide_chain_release_factors.


id: SM01016
description: Arginyl tRNA synthetase N terminal dom
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01016
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM01016_Arginyl_tRNA_synthetase_N_terminal_dom


id: SM01086
description: C-terminal, D2-small domain, of ClpB protein
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01086
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM01086_C-terminal,_D2-small_domain,_of_ClpB_protein


id: SM01232
description: Formamidopyrimidine-DNA glycosylase H2TH domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01232
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM01232_Formamidopyrimidine-DNA_glycosylase_H2TH_domain


id: SM01234
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01234
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM01234_This_domain_has_haemolytic_activity_(PMID:19306042)._It_is_found_in_short_(73-103_amino_acid)_proteins_and_contains_three_conserved_cysteine_residues.

description:
  This domain has haemolytic activity (PMID:19306042). It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.


id: SM01382
description: Ribosomal Proteins L2, C-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01382
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM01382_Ribosomal_Proteins_L2,_C-terminal_domain


id: SM01383
description: Ribosomal Proteins L2, RNA binding domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01383
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM01383_Ribosomal_Proteins_L2,_RNA_binding_domain


id: SM01390
description: Ribosomal protein S4/S9 N-terminal domain
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01390
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM01390_Ribosomal_protein_S4/S9_N-terminal_domain


id: SM01488
description: DDE transposase retroviral integrase sub-family
memo: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM01488
name:
  Protein Domains (SMART).STRING_v12.0_1618869_STRINGid_SM01488_DDE_transposase_retroviral_integrase_sub-family


