# geneInfo

ensembl_gene_id: APY09_00020
symbol: KSW12793.1
gene_biotype: protein_coding
description:
  ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00030
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: APY09_00035
symbol: KSW12796.1
gene_biotype: protein_coding
description:
  Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00040
symbol: ftsX
gene_biotype: protein_coding
description:
  Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: APY09_00045
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: APY09_00050
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: APY09_00055
symbol: gdhA
gene_biotype: protein_coding
description:
  Converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: APY09_00060
symbol: KSW12801.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00065
symbol: KSW12802.1
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00075
symbol: KSW12804.1
gene_biotype: protein_coding
description:
  Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00085
symbol: KSW12806.1
gene_biotype: protein_coding
description:
  Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00090
symbol: KSW12807.1
gene_biotype: protein_coding
description:
  Phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00100
symbol: KSW12809.1
gene_biotype: protein_coding
description:
  Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00105
symbol: rmlA
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: APY09_00110
symbol: rfbC
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: APY09_00115
symbol: KSW12812.1
gene_biotype: protein_coding
description:
  Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00120
symbol: nudI
gene_biotype: protein_coding
description:
  NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.


ensembl_gene_id: APY09_00125
symbol: KSW12814.1
gene_biotype: protein_coding
description:
  Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00130
symbol: cwlC
gene_biotype: protein_coding
description:
  Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00135
symbol: KSW12816.1
gene_biotype: protein_coding
description:
  Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00140
symbol: tuaD_2
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: APY09_00150
symbol: KSW12818.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00160
symbol: iolG
gene_biotype: protein_coding
description:
  Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00165
symbol: arnB
gene_biotype: protein_coding
description:
  Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: APY09_00170
symbol: dapH
gene_biotype: protein_coding
description:
  Acetylglucosamine-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00175
symbol: KSW12823.1
gene_biotype: protein_coding
description:
  Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00185
symbol: yvhJ
gene_biotype: protein_coding
description:
  Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00195
symbol: galE
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00200
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: APY09_00205
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: APY09_00210
symbol: arlS_2
gene_biotype: protein_coding
description:
  Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00215
symbol: regX3
gene_biotype: protein_coding
description:
  Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00220
symbol: KSW12831.1
gene_biotype: protein_coding
description:
  Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00225
symbol: maf
gene_biotype: protein_coding
description:
  Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: APY09_00230
symbol: dapD
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.


ensembl_gene_id: APY09_00235
symbol: dapL
gene_biotype: protein_coding
description:
  Succinyldiaminopimelate transaminase; Catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00240
symbol: KSW12835.1
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: APY09_00245
symbol: KSW12836.1
gene_biotype: protein_coding
description:
  2-hydroxymuconic semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00250
symbol: typA
gene_biotype: protein_coding
description:
  GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00255
symbol: yeaD
gene_biotype: protein_coding
description:
  D-hexose-6-phosphate mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glucose-6-phosphate 1-epimerase family.


ensembl_gene_id: APY09_00260
symbol: plsC_2
gene_biotype: protein_coding
description:
  Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00270
symbol: glnA_1
gene_biotype: protein_coding
description:
  Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family.


ensembl_gene_id: APY09_00275
symbol: KSW12842.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 20; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00285
symbol: KSW13665.1
gene_biotype: protein_coding
description:
  GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00295
symbol: KSW12845.1
gene_biotype: protein_coding
description:
  EcsC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00310
symbol: amyS
gene_biotype: protein_coding
description:
  Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00320
symbol: KSW12848.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: APY09_00325
symbol: vapC
gene_biotype: protein_coding
description:
  Ribonuclease; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: APY09_00330
symbol: KSW13668.1
gene_biotype: protein_coding
description:
  Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00335
symbol: KSW12850.1
gene_biotype: protein_coding
description:
  Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00345
symbol: KSW12852.1
gene_biotype: protein_coding
description:
  DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00355
symbol: engD
gene_biotype: protein_coding
description:
  GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: APY09_00360
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: APY09_00365
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: APY09_00370
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: APY09_00375
symbol: iolC_2
gene_biotype: protein_coding
description:
  Ribokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00380
symbol: KSW12857.1
gene_biotype: protein_coding
description:
  UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: APY09_00385
symbol: yqfA
gene_biotype: protein_coding
description:
  Hemolysin III; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00390
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: APY09_00400
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: APY09_00405
symbol: fkbP
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00410
symbol: KSW12862.1
gene_biotype: protein_coding
description:
  Bax1 inhibitor-like family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00420
symbol: gppA
gene_biotype: protein_coding
description:
  Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00425
symbol: KSW12864.1
gene_biotype: protein_coding
description:
  Septum formation initiator family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00430
symbol: KSW12865.1
gene_biotype: protein_coding
description:
  Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00435
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: APY09_00445
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: APY09_00450
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: APY09_00460
symbol: galK
gene_biotype: protein_coding
description:
  Galactokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: APY09_00465
symbol: yjcG
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00470
symbol: exoA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00475
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: APY09_00480
symbol: glyA1
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: APY09_00485
symbol: wcaJ
gene_biotype: protein_coding
description:
  UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00490
symbol: KSW12877.1
gene_biotype: protein_coding
description:
  Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: APY09_00495
symbol: KSW12878.1
gene_biotype: protein_coding
description:
  Galactose oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00530
symbol: KSW12885.1
gene_biotype: protein_coding
description:
  Polypeptide N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00535
symbol: KSW12886.1
gene_biotype: protein_coding
description:
  CDP-alcohol phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00540
symbol: hldE
gene_biotype: protein_coding
description:
  Cytidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00545
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: APY09_00560
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.


ensembl_gene_id: APY09_00565
symbol: czcD
gene_biotype: protein_coding
description:
  Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00570
symbol: pgi
gene_biotype: protein_coding
description:
  Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family.


ensembl_gene_id: APY09_00575
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.


ensembl_gene_id: APY09_00580
symbol: sstT
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: APY09_00585
symbol: KSW12895.1
gene_biotype: protein_coding
description:
  Folate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00590
symbol: pta
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00595
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: APY09_00600
symbol: cobB
gene_biotype: protein_coding
description:
  NAD-dependent deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00620
symbol: nadE
gene_biotype: protein_coding
description:
  NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: APY09_00625
symbol: KSW12903.1
gene_biotype: protein_coding
description:
  Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00635
symbol: KSW12905.1
gene_biotype: protein_coding
description:
  Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00640
symbol: KSW12906.1
gene_biotype: protein_coding
description:
  Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00645
symbol: deoC1
gene_biotype: protein_coding
description:
  2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: APY09_00650
symbol: deoD
gene_biotype: protein_coding
description:
  Purine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00655
symbol: deoR_1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00660
symbol: pdp
gene_biotype: protein_coding
description:
  Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00665
symbol: cdd
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: APY09_00670
symbol: KSW12912.1
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: APY09_00680
symbol: rbsA_2
gene_biotype: protein_coding
description:
  Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00690
symbol: yhcR
gene_biotype: protein_coding
description:
  Metallophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: APY09_00695
symbol: KSW12917.1
gene_biotype: protein_coding
description:
  Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00700
symbol: KSW12918.1
gene_biotype: protein_coding
description:
  Inosine-5-monophosphate dehydrogenase; Catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00705
symbol: KSW12919.1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00710
symbol: fsaA
gene_biotype: protein_coding
description:
  Fructose-6-phosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00715
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: APY09_00720
symbol: yihS_2
gene_biotype: protein_coding
description:
  N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00725
symbol: ycgE
gene_biotype: protein_coding
description:
  Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00730
symbol: whiB
gene_biotype: protein_coding
description:
  WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: APY09_00735
symbol: bdbD
gene_biotype: protein_coding
description:
  Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00740
symbol: groS
gene_biotype: protein_coding
description:
  Molecular chaperone GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: APY09_00745
symbol: KSW12927.1
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00750
symbol: ybdK
gene_biotype: protein_coding
description:
  Carboxylate--amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.


ensembl_gene_id: APY09_00760
symbol: KSW12930.1
gene_biotype: protein_coding
description:
  Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00765
symbol: gcp
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyl adenosine modification protein TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: APY09_00770
symbol: KSW12932.1
gene_biotype: protein_coding
description:
  Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00775
symbol: frdB
gene_biotype: protein_coding
description:
  Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00780
symbol: sdhA
gene_biotype: protein_coding
description:
  Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00790
symbol: ypeA
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.


ensembl_gene_id: APY09_00795
symbol: yeaZ
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyladenosine biosynthesis protein TsaB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00800
symbol: ydiB
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00805
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: APY09_00815
symbol: KSW12940.1
gene_biotype: protein_coding
description:
  Multidrug DMT transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00820
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine amidotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: APY09_00825
symbol: coaA
gene_biotype: protein_coding
description:
  Type I pantothenate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00835
symbol: ycjP_2
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00845
symbol: KSW12945.1
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00850
symbol: lacZ_2
gene_biotype: protein_coding
description:
  Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00855
symbol: rbsR_2
gene_biotype: protein_coding
description:
  LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00865
symbol: KSW12949.1
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00870
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: APY09_00875
symbol: rpsI
gene_biotype: protein_coding
description:
  30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: APY09_00880
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: APY09_00885
symbol: truA
gene_biotype: protein_coding
description:
  Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: APY09_00890
symbol: ppgK_2
gene_biotype: protein_coding
description:
  ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00895
symbol: rplQ
gene_biotype: protein_coding
description:
  50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL17 family.


ensembl_gene_id: APY09_00900
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: APY09_00905
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: APY09_00910
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: APY09_00915
symbol: rpmJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L36; Smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00920
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: APY09_00925
symbol: map_2
gene_biotype: protein_coding
description:
  Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: APY09_00930
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: APY09_00935
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: APY09_00940
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: APY09_00945
symbol: rpmD
gene_biotype: protein_coding
description:
  50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_00950
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: APY09_00955
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: APY09_00960
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: APY09_00965
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: APY09_00970
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: APY09_00975
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: APY09_00980
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: APY09_00985
symbol: rplN
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: APY09_00990
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: APY09_00995
symbol: rpmC
gene_biotype: protein_coding
description:
  50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: APY09_01000
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: APY09_01005
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: APY09_01010
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: APY09_01015
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: APY09_01020
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: APY09_01025
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: APY09_01035
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: APY09_01040
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: APY09_01045
symbol: tuf
gene_biotype: protein_coding
description:
  Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: APY09_01050
symbol: fusA
gene_biotype: protein_coding
description:
  Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: APY09_01055
symbol: rpsG
gene_biotype: protein_coding
description:
  30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: APY09_01060
symbol: rpsL
gene_biotype: protein_coding
description:
  30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: APY09_01065
symbol: bglB_4
gene_biotype: protein_coding
description:
  Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01070
symbol: KSW12989.1
gene_biotype: protein_coding
description:
  Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01075
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: APY09_01090
symbol: KSW12992.1
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase; Catalyzes the formation of acetate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01095
symbol: KSW12993.1
gene_biotype: protein_coding
description:
  Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01100
symbol: KSW12994.1
gene_biotype: protein_coding
description:
  Fructosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the fructosamine kinase family.


ensembl_gene_id: APY09_01110
symbol: KSW12996.1
gene_biotype: protein_coding
description:
  Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01115
symbol: KSW12997.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01120
symbol: KSW12998.1
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01140
symbol: APY09_01140
gene_biotype: protein_coding
description:
  tRNA-Ala; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01150
symbol: moeA_1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: APY09_01155
symbol: gtaB
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01160
symbol: KSW13004.1
gene_biotype: protein_coding
description:
  5-formyltetrahydrofolate cyclo-ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01165
symbol: mscL
gene_biotype: protein_coding
description:
  Mechanosensitive ion channel protein MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: APY09_01175
symbol: KSW13007.1
gene_biotype: protein_coding
description:
  Prevent-host-death family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01190
symbol: KSW13009.1
gene_biotype: protein_coding
description:
  Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01195
symbol: iap
gene_biotype: protein_coding
description:
  Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01200
symbol: ideR_2
gene_biotype: protein_coding
description:
  DtxR family iron (metal) dependent repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01205
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: APY09_01210
symbol: KSW13013.1
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01225
symbol: csp
gene_biotype: protein_coding
description:
  Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01250
symbol: KSW13020.1
gene_biotype: protein_coding
description:
  Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01255
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: APY09_01260
symbol: gla
gene_biotype: protein_coding
description:
  Glycerol transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: APY09_01270
symbol: lysX
gene_biotype: protein_coding
description:
  lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: APY09_01275
symbol: ydjH
gene_biotype: protein_coding
description:
  Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: APY09_01280
symbol: malH
gene_biotype: protein_coding
description:
  6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01285
symbol: KSW13027.1
gene_biotype: protein_coding
description:
  LmbE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01290
symbol: mdxE_2
gene_biotype: protein_coding
description:
  Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01295
symbol: ycjP_3
gene_biotype: protein_coding
description:
  Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01305
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: APY09_01310
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: APY09_01315
symbol: KSW13677.1
gene_biotype: protein_coding
description:
  F420-dependent NADP oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01320
symbol: KSW13033.1
gene_biotype: protein_coding
description:
  PH domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01345
symbol: KSW13038.1
gene_biotype: protein_coding
description:
  Type VII secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.


ensembl_gene_id: APY09_01350
symbol: groEL
gene_biotype: protein_coding
description:
  Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: APY09_01360
symbol: KSW13041.1
gene_biotype: protein_coding
description:
  LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01365
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: APY09_01380
symbol: afsK
gene_biotype: protein_coding
description:
  Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01385
symbol: ugpC
gene_biotype: protein_coding
description:
  Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.


ensembl_gene_id: APY09_01390
symbol: KSW13678.1
gene_biotype: protein_coding
description:
  Lipopolysaccharide kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01395
symbol: ugpQ_2
gene_biotype: protein_coding
description:
  Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01410
symbol: yqiK
gene_biotype: protein_coding
description:
  Flotillin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01415
symbol: fba
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.


ensembl_gene_id: APY09_01425
symbol: trmH
gene_biotype: protein_coding
description:
  RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01430
symbol: nagD
gene_biotype: protein_coding
description:
  HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01435
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: APY09_01440
symbol: actIII
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: APY09_01450
symbol: xthA
gene_biotype: protein_coding
description:
  Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01455
symbol: pbpE
gene_biotype: protein_coding
description:
  Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01460
symbol: KSW13058.1
gene_biotype: protein_coding
description:
  TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01465
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01490
symbol: KSW13064.1
gene_biotype: protein_coding
description:
  Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01495
symbol: KSW13680.1
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01500
symbol: glnR
gene_biotype: protein_coding
description:
  Heat-shock protein HspR; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01505
symbol: cbpA
gene_biotype: protein_coding
description:
  Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01510
symbol: grpE
gene_biotype: protein_coding
description:
  Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...]


ensembl_gene_id: APY09_01515
symbol: dnaK
gene_biotype: protein_coding
description:
  Fe-S protein assembly chaperone HscA; Acts as a chaperone; Belongs to the heat shock protein 70 family.


ensembl_gene_id: APY09_01520
symbol: KSW13069.1
gene_biotype: protein_coding
description:
  alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01525
symbol: rlmC
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: APY09_01535
symbol: dkgB
gene_biotype: protein_coding
description:
  2,5-diketo-D-gluconic acid reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01540
symbol: apeB
gene_biotype: protein_coding
description:
  Aminopeptidase; Catalyzes the removal of amino acids from the N termini of peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01545
symbol: ohrB
gene_biotype: protein_coding
description:
  Ohr subfamily peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01550
symbol: KSW13075.1
gene_biotype: protein_coding
description:
  ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01555
symbol: KSW13076.1
gene_biotype: protein_coding
description:
  Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01565
symbol: KSW13078.1
gene_biotype: protein_coding
description:
  3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01580
symbol: KSW13681.1
gene_biotype: protein_coding
description:
  Small transmembrane and glycosylated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01590
symbol: hslR
gene_biotype: protein_coding
description:
  Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01600
symbol: macB_7
gene_biotype: protein_coding
description:
  Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01640
symbol: KSW13092.1
gene_biotype: protein_coding
description:
  Cytochrome C oxidase subunit IV; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01645
symbol: pcs
gene_biotype: protein_coding
description:
  Phosphatidylcholine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01650
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide synthetase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the tr [...]


ensembl_gene_id: APY09_01655
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in  [...]


ensembl_gene_id: APY09_01665
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole-succinocarboxamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SAICAR synthetase family.


ensembl_gene_id: APY09_01670
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family.


ensembl_gene_id: APY09_01700
symbol: KSW13682.1
gene_biotype: protein_coding
description:
  AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01705
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: APY09_01710
symbol: KSW13105.1
gene_biotype: protein_coding
description:
  Phosphate transport regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01715
symbol: pitA
gene_biotype: protein_coding
description:
  Inorganic phosphate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01720
symbol: KSW13107.1
gene_biotype: protein_coding
description:
  Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01740
symbol: KSW13110.1
gene_biotype: protein_coding
description:
  ADP-ribosylglycohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01755
symbol: msrB
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: APY09_01760
symbol: KSW13114.1
gene_biotype: protein_coding
description:
  Mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01780
symbol: KSW13115.1
gene_biotype: protein_coding
description:
  Collagen-binding domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01785
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: APY09_01790
symbol: cas1
gene_biotype: protein_coding
description:
  Type II CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: APY09_01820
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01825
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: APY09_01830
symbol: KSW13125.1
gene_biotype: protein_coding
description:
  Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01835
symbol: mopII
gene_biotype: protein_coding
description:
  Molybdenum-pterin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01845
symbol: dcd
gene_biotype: protein_coding
description:
  Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.


ensembl_gene_id: APY09_01860
symbol: mutY
gene_biotype: protein_coding
description:
  Base excision DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01865
symbol: macB_6
gene_biotype: protein_coding
description:
  Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01870
symbol: macB_5
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01875
symbol: KSW13134.1
gene_biotype: protein_coding
description:
  Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01880
symbol: paiA
gene_biotype: protein_coding
description:
  Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01885
symbol: trxA
gene_biotype: protein_coding
description:
  Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.


ensembl_gene_id: APY09_01920
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: APY09_01925
symbol: lysC
gene_biotype: protein_coding
description:
  Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family.


ensembl_gene_id: APY09_01940
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: APY09_01945
symbol: dnaX_1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit gamma/tau; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01950
symbol: KSW13148.1
gene_biotype: protein_coding
description:
  Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01975
symbol: pgm
gene_biotype: protein_coding
description:
  Phosphoglucomutase; Catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_01995
symbol: APY09_01995
gene_biotype: protein_coding
description:
  Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02005
symbol: aniA
gene_biotype: protein_coding
description:
  Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02025
symbol: KSW13159.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02030
symbol: KSW13160.1
gene_biotype: protein_coding
description:
  Sodium pump decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02035
symbol: KSW13161.1
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02040
symbol: nrdD
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase; Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02065
symbol: rhlE
gene_biotype: protein_coding
description:
  Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02070
symbol: KSW13166.1
gene_biotype: protein_coding
description:
  Alkaline protease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02090
symbol: KSW13170.1
gene_biotype: protein_coding
description:
  Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02120
symbol: KSW13175.1
gene_biotype: protein_coding
description:
  Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02140
symbol: KSW13179.1
gene_biotype: protein_coding
description:
  Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02145
symbol: crp
gene_biotype: protein_coding
description:
  Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02155
symbol: whiB-2
gene_biotype: protein_coding
description:
  Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: APY09_02160
symbol: ponA
gene_biotype: protein_coding
description:
  Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02165
symbol: KSW13184.1
gene_biotype: protein_coding
description:
  Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02175
symbol: KSW13185.1
gene_biotype: protein_coding
description:
  Endo alpha-1,4 polygalactosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02180
symbol: KSW13687.1
gene_biotype: protein_coding
description:
  RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02200
symbol: KSW13188.1
gene_biotype: protein_coding
description:
  Bile acid:sodium symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02210
symbol: pat
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: APY09_02230
symbol: purB
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02245
symbol: KSW13197.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02255
symbol: KSW13199.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02270
symbol: copZ
gene_biotype: protein_coding
description:
  Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02275
symbol: copA
gene_biotype: protein_coding
description:
  ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02300
symbol: KSW13207.1
gene_biotype: protein_coding
description:
  Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02325
symbol: KSW13212.1
gene_biotype: protein_coding
description:
  Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02330
symbol: serS
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: APY09_02335
symbol: KSW13214.1
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02340
symbol: pheA
gene_biotype: protein_coding
description:
  Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02350
symbol: dedA
gene_biotype: protein_coding
description:
  Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02365
symbol: prtP_5
gene_biotype: protein_coding
description:
  Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.


ensembl_gene_id: APY09_02395
symbol: cls_1
gene_biotype: protein_coding
description:
  Cardiolipin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02405
symbol: ykoD_1
gene_biotype: protein_coding
description:
  Cobalt ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02415
symbol: cycA
gene_biotype: protein_coding
description:
  Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02430
symbol: KSW13231.1
gene_biotype: protein_coding
description:
  Hemerythrin HHE cation-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02435
symbol: tdcF
gene_biotype: protein_coding
description:
  LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02445
symbol: KSW13234.1
gene_biotype: protein_coding
description:
  Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02455
symbol: azoB
gene_biotype: protein_coding
description:
  NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02465
symbol: mlc_1
gene_biotype: protein_coding
description:
  MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02470
symbol: xylA_2
gene_biotype: protein_coding
description:
  Xylose isomerase; Catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02475
symbol: xylB_1
gene_biotype: protein_coding
description:
  Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02480
symbol: patB_2
gene_biotype: protein_coding
description:
  Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02485
symbol: mleN
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02495
symbol: dhaL_1
gene_biotype: protein_coding
description:
  Dak phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02500
symbol: dhaK_1
gene_biotype: protein_coding
description:
  With DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02525
symbol: glpR
gene_biotype: protein_coding
description:
  DeoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02530
symbol: KSW13251.1
gene_biotype: protein_coding
description:
  Damage-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02570
symbol: troA_2
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: APY09_02575
symbol: KSW13260.1
gene_biotype: protein_coding
description:
  Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02590
symbol: lysN
gene_biotype: protein_coding
description:
  GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02595
symbol: ddlB
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: APY09_02605
symbol: parB_1
gene_biotype: protein_coding
description:
  Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.


ensembl_gene_id: APY09_02610
symbol: soj_1
gene_biotype: protein_coding
description:
  Chromosome partitioning protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02615
symbol: rsmG
gene_biotype: protein_coding
description:
  16S rRNA (guanine(527)-N(7))-methyltransferase RsmG; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: APY09_02620
symbol: KSW13268.1
gene_biotype: protein_coding
description:
  Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02630
symbol: yidD
gene_biotype: protein_coding
description:
  Membrane protein insertion efficiency factor YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: APY09_02635
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: APY09_02640
symbol: rpmH
gene_biotype: protein_coding
description:
  50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: APY09_02645
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: APY09_02650
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of  [...]


ensembl_gene_id: APY09_02655
symbol: recF
gene_biotype: protein_coding
description:
  Recombinase RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: APY09_02670
symbol: gyrB_1
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: APY09_02675
symbol: gyrA_1
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: APY09_02700
symbol: phrB
gene_biotype: protein_coding
description:
  FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.


ensembl_gene_id: APY09_02705
symbol: KSW13282.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02715
symbol: ychJ
gene_biotype: protein_coding
description:
  Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family.


ensembl_gene_id: APY09_02720
symbol: trxB
gene_biotype: protein_coding
description:
  Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02735
symbol: KSW13288.1
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.


ensembl_gene_id: APY09_02740
symbol: cca
gene_biotype: protein_coding
description:
  CCA tRNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: APY09_02745
symbol: yqjI
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: APY09_02760
symbol: rpsR1
gene_biotype: protein_coding
description:
  30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: APY09_02775
symbol: mdtK
gene_biotype: protein_coding
description:
  MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02780
symbol: dnaB
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: APY09_02785
symbol: rarD
gene_biotype: protein_coding
description:
  Protein RarD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02790
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: APY09_02795
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: APY09_02805
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: APY09_02810
symbol: KSW13301.1
gene_biotype: protein_coding
description:
  uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: APY09_02815
symbol: hemB
gene_biotype: protein_coding
description:
  Delta-aminolevulinic acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ALAD family.


ensembl_gene_id: APY09_02820
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02830
symbol: KSW13305.1
gene_biotype: protein_coding
description:
  DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02835
symbol: KSW13306.1
gene_biotype: protein_coding
description:
  Cysteine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02840
symbol: KSW13307.1
gene_biotype: protein_coding
description:
  Protein HldE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02860
symbol: KSW13311.1
gene_biotype: protein_coding
description:
  Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: APY09_02865
symbol: KSW13312.1
gene_biotype: protein_coding
description:
  Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02870
symbol: KSW13313.1
gene_biotype: protein_coding
description:
  5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02880
symbol: ecfA1
gene_biotype: protein_coding
description:
  Energy-coupling factor transporter ATP-binding protein EcfA1; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02885
symbol: ecfT
gene_biotype: protein_coding
description:
  Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02895
symbol: KSW13316.1
gene_biotype: protein_coding
description:
  Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02900
symbol: cmtR
gene_biotype: protein_coding
description:
  ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02945
symbol: artM_2
gene_biotype: protein_coding
description:
  Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02960
symbol: KSW13327.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02970
symbol: KSW13329.1
gene_biotype: protein_coding
description:
  Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_02975
symbol: ahcY
gene_biotype: protein_coding
description:
  S-adenosyl-L-homocysteine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03040
symbol: KSW13695.1
gene_biotype: protein_coding
description:
  Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03070
symbol: KSW13697.1
gene_biotype: protein_coding
description:
  Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03105
symbol: cypB
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: APY09_03110
symbol: gluP
gene_biotype: protein_coding
description:
  Peptidase, S54 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03130
symbol: KSW13356.1
gene_biotype: protein_coding
description:
  Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03135
symbol: trpG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03140
symbol: pknB
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03155
symbol: ftsW_1
gene_biotype: protein_coding
description:
  Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.


ensembl_gene_id: APY09_03180
symbol: nrdF2
gene_biotype: protein_coding
description:
  Ribonucleotide-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: APY09_03235
symbol: KSW13374.1
gene_biotype: protein_coding
description:
  Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03240
symbol: pip
gene_biotype: protein_coding
description:
  Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03245
symbol: KSW13376.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid transporter AzlD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03250
symbol: ygaZ
gene_biotype: protein_coding
description:
  Branched-chain amino acid transporter AzlC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03255
symbol: artJ
gene_biotype: protein_coding
description:
  Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03260
symbol: glnP
gene_biotype: protein_coding
description:
  Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03265
symbol: tcyB_1
gene_biotype: protein_coding
description:
  Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03270
symbol: artM_1
gene_biotype: protein_coding
description:
  Glutamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03295
symbol: KSW13706.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein GtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03300
symbol: KSW13382.1
gene_biotype: protein_coding
description:
  Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03305
symbol: nrdH_1
gene_biotype: protein_coding
description:
  NrdH-redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03310
symbol: nrdI
gene_biotype: protein_coding
description:
  Ribonucleotide reductase stimulatory protein; Probably involved in ribonucleotide reductase function.


ensembl_gene_id: APY09_03315
symbol: nrdE2
gene_biotype: protein_coding
description:
  Ribonucleotide-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: APY09_03340
symbol: KSW13390.1
gene_biotype: protein_coding
description:
  Isopentenyl-diphosphate delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03355
symbol: sdaA
gene_biotype: protein_coding
description:
  Serine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03380
symbol: mtnN
gene_biotype: protein_coding
description:
  Nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.


ensembl_gene_id: APY09_03385
symbol: KSW13399.1
gene_biotype: protein_coding
description:
  Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03395
symbol: dipZ
gene_biotype: protein_coding
description:
  Cytochrome C biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03400
symbol: KSW13402.1
gene_biotype: protein_coding
description:
  Phosphoribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03405
symbol: KSW13403.1
gene_biotype: protein_coding
description:
  Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03410
symbol: KSW13404.1
gene_biotype: protein_coding
description:
  Transcription elongation protein SprT; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03415
symbol: KSW13405.1
gene_biotype: protein_coding
description:
  ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03420
symbol: draG_1
gene_biotype: protein_coding
description:
  ADP-ribosyl-(dinitrogen reductase) hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03430
symbol: KSW13408.1
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03455
symbol: KSW13413.1
gene_biotype: protein_coding
description:
  Deoxyribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03460
symbol: KSW13414.1
gene_biotype: protein_coding
description:
  Antibiotic resistance protein VanZ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03485
symbol: gsiA_5
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.


ensembl_gene_id: APY09_03490
symbol: gsiD_3
gene_biotype: protein_coding
description:
  Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03505
symbol: opuCC
gene_biotype: protein_coding
description:
  Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03530
symbol: KSW13428.1
gene_biotype: protein_coding
description:
  Ion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03535
symbol: rutG
gene_biotype: protein_coding
description:
  Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03560
symbol: gltX_2
gene_biotype: protein_coding
description:
  glutamyl-Q tRNA(Asp) ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: APY09_03565
symbol: crcB
gene_biotype: protein_coding
description:
  Chromosome condensation protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: APY09_03570
symbol: crcB-2
gene_biotype: protein_coding
description:
  Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: APY09_03575
symbol: metN
gene_biotype: protein_coding
description:
  ABC transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.


ensembl_gene_id: APY09_03580
symbol: metP
gene_biotype: protein_coding
description:
  Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03585
symbol: KSW13437.1
gene_biotype: protein_coding
description:
  ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: APY09_03595
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: APY09_03605
symbol: tadA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: APY09_03610
symbol: moaB
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03615
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03620
symbol: moeA_2
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: APY09_03625
symbol: moaA
gene_biotype: protein_coding
description:
  Cyclic pyranopterin phosphate synthase MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: APY09_03635
symbol: narZ
gene_biotype: protein_coding
description:
  Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: APY09_03640
symbol: narY
gene_biotype: protein_coding
description:
  Nitrate reductase; With NarZV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03655
symbol: KSW13450.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03660
symbol: moaE
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03665
symbol: moeZ
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiF; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03670
symbol: KSW13453.1
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03675
symbol: KSW13454.1
gene_biotype: protein_coding
description:
  Cell wall-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03680
symbol: mog
gene_biotype: protein_coding
description:
  Molybdopterin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03685
symbol: ModA
gene_biotype: protein_coding
description:
  Molybdate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03690
symbol: glnQ_4
gene_biotype: protein_coding
description:
  Molybdenum ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: APY09_03695
symbol: hgdC
gene_biotype: protein_coding
description:
  Activase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03700
symbol: lacZ_3
gene_biotype: protein_coding
description:
  Glycoside hydrolase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03705
symbol: KSW13460.1
gene_biotype: protein_coding
description:
  Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03715
symbol: sodA
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: APY09_03725
symbol: KSW13462.1
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily.


ensembl_gene_id: APY09_03745
symbol: KSW13466.1
gene_biotype: protein_coding
description:
  Addiction module protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03760
symbol: KSW13469.1
gene_biotype: protein_coding
description:
  Elongation factor 3; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03775
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: APY09_03780
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: APY09_03785
symbol: dnaX_2
gene_biotype: protein_coding
description:
  DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03790
symbol: tap
gene_biotype: protein_coding
description:
  TAP-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03800
symbol: ftpA
gene_biotype: protein_coding
description:
  DNA starvation/stationary phase protection protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.


ensembl_gene_id: APY09_03805
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: APY09_03810
symbol: metB
gene_biotype: protein_coding
description:
  Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03815
symbol: clcA_1
gene_biotype: protein_coding
description:
  Chloride channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03825
symbol: lsr2
gene_biotype: protein_coding
description:
  Nucleoid-associated protein Lsr2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03835
symbol: psaB_3
gene_biotype: protein_coding
description:
  Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03845
symbol: KSW13485.1
gene_biotype: protein_coding
description:
  CarD family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03850
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: APY09_03880
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: APY09_03890
symbol: thrC
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03895
symbol: cysS
gene_biotype: protein_coding
description:
  cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: APY09_03900
symbol: KSW13496.1
gene_biotype: protein_coding
description:
  Phosphopentomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03905
symbol: rlmB_2
gene_biotype: protein_coding
description:
  RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: APY09_03925
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: APY09_03945
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: APY09_03950
symbol: clpC
gene_biotype: protein_coding
description:
  NDP-hexose 4-ketoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family.


ensembl_gene_id: APY09_03970
symbol: KSW13709.1
gene_biotype: protein_coding
description:
  Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_03995
symbol: ppdK
gene_biotype: protein_coding
description:
  Pyruvate phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: APY09_04000
symbol: KSW13513.1
gene_biotype: protein_coding
description:
  CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04010
symbol: efeU
gene_biotype: protein_coding
description:
  OfeT family oxidase-dependent iron (Fe2+) transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04045
symbol: KSW13521.1
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ApbE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04055
symbol: KSW13522.1
gene_biotype: protein_coding
description:
  Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04085
symbol: metX
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: APY09_04090
symbol: mdeA
gene_biotype: protein_coding
description:
  O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04105
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: APY09_04110
symbol: dacC
gene_biotype: protein_coding
description:
  D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04120
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: APY09_04125
symbol: hpt
gene_biotype: protein_coding
description:
  Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: APY09_04130
symbol: ftsH_2
gene_biotype: protein_coding
description:
  Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: APY09_04135
symbol: folE
gene_biotype: protein_coding
description:
  GTP cyclohydrolase I; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04140
symbol: folP1
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: APY09_04145
symbol: folB
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: APY09_04160
symbol: disA
gene_biotype: protein_coding
description:
  DNA integrity scanning protein DisA; Non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DisA family.


ensembl_gene_id: APY09_04165
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: APY09_04190
symbol: KSW13548.1
gene_biotype: protein_coding
description:
  Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04220
symbol: eccCa1
gene_biotype: protein_coding
description:
  ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04230
symbol: KSW13556.1
gene_biotype: protein_coding
description:
  Translation initiation factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04240
symbol: KSW13558.1
gene_biotype: protein_coding
description:
  Type VII secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04245
symbol: KSW13559.1
gene_biotype: protein_coding
description:
  Type VII secretion system protein YukD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04265
symbol: KSW13561.1
gene_biotype: protein_coding
description:
  Subtilisin BPN; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04290
symbol: ktrA
gene_biotype: protein_coding
description:
  Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04300
symbol: ktrB
gene_biotype: protein_coding
description:
  Potassium transporter Trk; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04310
symbol: KSW13568.1
gene_biotype: protein_coding
description:
  Fructose-2,6-bisphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04320
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: APY09_04350
symbol: menA
gene_biotype: protein_coding
description:
  1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.


ensembl_gene_id: APY09_04355
symbol: menE_2
gene_biotype: protein_coding
description:
  acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04370
symbol: KSW13578.1
gene_biotype: protein_coding
description:
  Maltose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04395
symbol: menB
gene_biotype: protein_coding
description:
  Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.


ensembl_gene_id: APY09_04400
symbol: ykfB
gene_biotype: protein_coding
description:
  O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).


ensembl_gene_id: APY09_04405
symbol: menD
gene_biotype: protein_coding
description:
  2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.


ensembl_gene_id: APY09_04410
symbol: degQ
gene_biotype: protein_coding
description:
  Trypsin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04415
symbol: dhbC
gene_biotype: protein_coding
description:
  Isochorismate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04420
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).


ensembl_gene_id: APY09_04425
symbol: apr_7
gene_biotype: protein_coding
description:
  Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04445
symbol: KSW13592.1
gene_biotype: protein_coding
description:
  Cell wall anchor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04460
symbol: KSW13594.1
gene_biotype: protein_coding
description:
  Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04465
symbol: KSW13595.1
gene_biotype: protein_coding
description:
  ROK family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04475
symbol: KSW13597.1
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04500
symbol: KSW13602.1
gene_biotype: protein_coding
description:
  Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04505
symbol: KSW13603.1
gene_biotype: protein_coding
description:
  Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04515
symbol: KSW13605.1
gene_biotype: protein_coding
description:
  Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04520
symbol: ndhC
gene_biotype: protein_coding
description:
  NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: APY09_04525
symbol: nqo6
gene_biotype: protein_coding
description:
  NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: APY09_04530
symbol: KSW13608.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04535
symbol: nqo4
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04545
symbol: nuoF
gene_biotype: protein_coding
description:
  NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: APY09_04550
symbol: nqo3
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit G; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04555
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: APY09_04560
symbol: nqo9
gene_biotype: protein_coding
description:
  NADH:quinone oxidoreductase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: APY09_04565
symbol: nuoJ
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: APY09_04570
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: APY09_04575
symbol: nuoL
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04580
symbol: ndhD1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04585
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: APY09_04590
symbol: hepT
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: APY09_04600
symbol: htpX
gene_biotype: protein_coding
description:
  Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.


ensembl_gene_id: APY09_04605
symbol: KSW13622.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0234 family.


ensembl_gene_id: APY09_04625
symbol: rpmG
gene_biotype: protein_coding
description:
  50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: APY09_04630
symbol: KSW13624.1
gene_biotype: protein_coding
description:
  Sialidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04650
symbol: gsiA_7
gene_biotype: protein_coding
description:
  ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: APY09_04660
symbol: dapA_2
gene_biotype: protein_coding
description:
  Glucose dehydrogenase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. Belongs to the DapA family.


ensembl_gene_id: APY09_04670
symbol: nanE
gene_biotype: protein_coding
description:
  N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).


ensembl_gene_id: APY09_04685
symbol: KSW13635.1
gene_biotype: protein_coding
description:
  Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04695
symbol: KSW13637.1
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04705
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: APY09_04710
symbol: nusG
gene_biotype: protein_coding
description:
  Antitermination protein NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: APY09_04715
symbol: RplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04720
symbol: rplA
gene_biotype: protein_coding
description:
  50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL1 family.


ensembl_gene_id: APY09_04725
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: APY09_04730
symbol: rplL
gene_biotype: protein_coding
description:
  50S ribosomal protein L7; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: APY09_04735
symbol: KSW13644.1
gene_biotype: protein_coding
description:
  MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04755
symbol: rbsA_3
gene_biotype: protein_coding
description:
  D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04760
symbol: rbsC_2
gene_biotype: protein_coding
description:
  Ribose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: APY09_04775
symbol: rhaB_2
gene_biotype: protein_coding
description:
  Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04785
symbol: fucU
gene_biotype: protein_coding
description:
  RbsD or FucU transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family.


ensembl_gene_id: APY09_04795
symbol: pdhC
gene_biotype: protein_coding
description:
  Acetoin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04810
symbol: KSW13658.1
gene_biotype: protein_coding
description:
  Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04815
symbol: srlD
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04820
symbol: KSW13660.1
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04830
symbol: KSW13662.1
gene_biotype: protein_coding
description:
  Amino acid carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04840
symbol: azr
gene_biotype: protein_coding
description:
  Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04845
symbol: KSW10807.1
gene_biotype: protein_coding
description:
  Dolichyl-phosphate-mannose-protein mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04860
symbol: znuB_1
gene_biotype: protein_coding
description:
  Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04870
symbol: rsmI
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: APY09_04875
symbol: KSW10813.1
gene_biotype: protein_coding
description:
  Nicotinamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04880
symbol: metG
gene_biotype: protein_coding
description:
  methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: APY09_04885
symbol: scrB
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 32; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04890
symbol: bglF_1
gene_biotype: protein_coding
description:
  PTS sucrose transporter subunit IIABC; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04905
symbol: ptsI
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: APY09_04915
symbol: KSW10821.1
gene_biotype: protein_coding
description:
  PspC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04925
symbol: nreC_1
gene_biotype: protein_coding
description:
  LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04930
symbol: KSW10823.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0371 family.


ensembl_gene_id: APY09_04935
symbol: pcrA_1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04940
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: APY09_04945
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: APY09_04955
symbol: purH
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase; Involved in de novo purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04960
symbol: bioY2
gene_biotype: protein_coding
description:
  BioY family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04980
symbol: KSW10833.1
gene_biotype: protein_coding
description:
  Prevent-host-death protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_04985
symbol: KSW10834.1
gene_biotype: protein_coding
description:
  Death-on-curing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05055
symbol: KSW10847.1
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05060
symbol: yaeJ
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05070
symbol: KSW10849.1
gene_biotype: protein_coding
description:
  Damage-inducible protein J; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05075
symbol: KSW10850.1
gene_biotype: protein_coding
description:
  Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05080
symbol: ltaE
gene_biotype: protein_coding
description:
  Threonine aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05085
symbol: KSW10852.1
gene_biotype: protein_coding
description:
  Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05090
symbol: KSW10853.1
gene_biotype: protein_coding
description:
  Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05095
symbol: KSW10854.1
gene_biotype: protein_coding
description:
  Antitoxin PHD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05110
symbol: KSW10857.1
gene_biotype: protein_coding
description:
  MFS transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05125
symbol: macB_1
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.


ensembl_gene_id: APY09_05145
symbol: KSW10864.1
gene_biotype: protein_coding
description:
  Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05155
symbol: rsmA
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: APY09_05160
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: APY09_05170
symbol: KSW10868.1
gene_biotype: protein_coding
description:
  Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05205
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: APY09_05210
symbol: ctc
gene_biotype: protein_coding
description:
  50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: APY09_05215
symbol: manC1
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05230
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05235
symbol: yvdD
gene_biotype: protein_coding
description:
  DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.


ensembl_gene_id: APY09_05245
symbol: ylxH
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: APY09_05255
symbol: KSW10884.1
gene_biotype: protein_coding
description:
  Magnesium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05265
symbol: pepPI
gene_biotype: protein_coding
description:
  Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family.


ensembl_gene_id: APY09_05270
symbol: ansA
gene_biotype: protein_coding
description:
  L-asparaginase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05275
symbol: pheP
gene_biotype: protein_coding
description:
  L-asparagine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05280
symbol: KSW10888.1
gene_biotype: protein_coding
description:
  Metal-dependent phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05285
symbol: yhgN
gene_biotype: protein_coding
description:
  Antibiotic resistance protein MarC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05300
symbol: malP
gene_biotype: protein_coding
description:
  Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: APY09_05325
symbol: cshA_1
gene_biotype: protein_coding
description:
  DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.


ensembl_gene_id: APY09_05330
symbol: KSW10898.1
gene_biotype: protein_coding
description:
  tRNA-(ms[2]io[6]A)-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05345
symbol: pcrA_2
gene_biotype: protein_coding
description:
  DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: APY09_05375
symbol: iolE
gene_biotype: protein_coding
description:
  Myo-inosose-2 dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05385
symbol: KSW10908.1
gene_biotype: protein_coding
description:
  Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05395
symbol: idhA
gene_biotype: protein_coding
description:
  Inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05400
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05410
symbol: iolC_1
gene_biotype: protein_coding
description:
  5-dehydro-2-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05415
symbol: iolB
gene_biotype: protein_coding
description:
  5-deoxy-glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05420
symbol: iolD
gene_biotype: protein_coding
description:
  3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.


ensembl_gene_id: APY09_05425
symbol: mmsA
gene_biotype: protein_coding
description:
  Methylmalonate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05430
symbol: KSW10917.1
gene_biotype: protein_coding
description:
  2-keto-myo-inositol dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05440
symbol: KSW10919.1
gene_biotype: protein_coding
description:
  Protein iolH; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05475
symbol: KSW10926.1
gene_biotype: protein_coding
description:
  LicD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05485
symbol: KSW10928.1
gene_biotype: protein_coding
description:
  Lic-1 operon protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05515
symbol: KSW10934.1
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05520
symbol: KSW10935.1
gene_biotype: protein_coding
description:
  Rhamnan synthesis protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05565
symbol: rmlB
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: APY09_05605
symbol: KSW10950.1
gene_biotype: protein_coding
description:
  RDD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05650
symbol: KSW10959.1
gene_biotype: protein_coding
description:
  Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05655
symbol: KSW11271.1
gene_biotype: protein_coding
description:
  Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05660
symbol: hpf
gene_biotype: protein_coding
description:
  30S ribosomal protein S30; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: APY09_05665
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: APY09_05675
symbol: KSW10963.1
gene_biotype: protein_coding
description:
  Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05690
symbol: KSW11272.1
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlgA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05705
symbol: sbcC
gene_biotype: protein_coding
description:
  ATP-dependent dsDNA exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05710
symbol: sbcD
gene_biotype: protein_coding
description:
  Metallophosphatase; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: APY09_05730
symbol: rsgA
gene_biotype: protein_coding
description:
  GTP-binding protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: APY09_05735
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: APY09_05740
symbol: KSW10973.1
gene_biotype: protein_coding
description:
  DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05745
symbol: rpoE_2
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: APY09_05800
symbol: kgd
gene_biotype: protein_coding
description:
  Alpha-ketoglutarate decarboxylase; Kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05830
symbol: KSW10990.1
gene_biotype: protein_coding
description:
  XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05845
symbol: rpiB_1
gene_biotype: protein_coding
description:
  Catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05850
symbol: mntH
gene_biotype: protein_coding
description:
  Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05855
symbol: argS
gene_biotype: protein_coding
description:
  arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05860
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: APY09_05875
symbol: KSW10997.1
gene_biotype: protein_coding
description:
  CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05900
symbol: pdhD
gene_biotype: protein_coding
description:
  Mercuric reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05915
symbol: ybeZ
gene_biotype: protein_coding
description:
  Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05920
symbol: ybeY
gene_biotype: protein_coding
description:
  rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: APY09_05930
symbol: era
gene_biotype: protein_coding
description:
  GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: APY09_05935
symbol: uvrA_1
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05940
symbol: lutC
gene_biotype: protein_coding
description:
  Lactate utilization protein B/C; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05945
symbol: lutB
gene_biotype: protein_coding
description:
  (4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_05985
symbol: lutP
gene_biotype: protein_coding
description:
  L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: APY09_05990
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: APY09_06020
symbol: fur
gene_biotype: protein_coding
description:
  Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.


ensembl_gene_id: APY09_06050
symbol: malF
gene_biotype: protein_coding
description:
  Maltose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06075
symbol: glyQS
gene_biotype: protein_coding
description:
  glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: APY09_06085
symbol: aroD
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family.


ensembl_gene_id: APY09_06090
symbol: bglF_2
gene_biotype: protein_coding
description:
  PTS mannose transporter subunit IIABC; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06095
symbol: dgt
gene_biotype: protein_coding
description:
  Deoxyguanosinetriphosphate triphosphohydrolase; dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06100
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: APY09_06105
symbol: luxS
gene_biotype: protein_coding
description:
  S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.


ensembl_gene_id: APY09_06115
symbol: ilvE
gene_biotype: protein_coding
description:
  Catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06120
symbol: cysL
gene_biotype: protein_coding
description:
  LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: APY09_06140
symbol: manA
gene_biotype: protein_coding
description:
  Mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06150
symbol: metE_1
gene_biotype: protein_coding
description:
  Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06155
symbol: ilvD
gene_biotype: protein_coding
description:
  Dihydroxy-acid dehydratase; Catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IlvD/Edd family.


ensembl_gene_id: APY09_06160
symbol: lplA
gene_biotype: protein_coding
description:
  Lipoate--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06170
symbol: KSW11053.1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06180
symbol: ybaK
gene_biotype: protein_coding
description:
  cys-tRNA(pro)/cys-tRNA(cys) deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: APY09_06185
symbol: KSW11056.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06200
symbol: KSW11058.1
gene_biotype: protein_coding
description:
  Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06205
symbol: KSW11059.1
gene_biotype: protein_coding
description:
  NADPH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06215
symbol: KSW11061.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06220
symbol: KSW11281.1
gene_biotype: protein_coding
description:
  Sodium:alanine symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06225
symbol: KSW11062.1
gene_biotype: protein_coding
description:
  2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06230
symbol: KSW11063.1
gene_biotype: protein_coding
description:
  Allantoin permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the purine-cytosine permease (2.A.39) family.


ensembl_gene_id: APY09_06235
symbol: punA
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06245
symbol: gltX_1
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: APY09_06265
symbol: pulA
gene_biotype: protein_coding
description:
  Alpha-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: APY09_06270
symbol: srpS
gene_biotype: protein_coding
description:
  IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06275
symbol: leuC
gene_biotype: protein_coding
description:
  Isopropylmalate isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: APY09_06280
symbol: leuD
gene_biotype: protein_coding
description:
  Isopropylmalate isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: APY09_06285
symbol: murAA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: APY09_06295
symbol: plsC_1
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.


ensembl_gene_id: APY09_06305
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: APY09_06315
symbol: KSW11076.1
gene_biotype: protein_coding
description:
  Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06325
symbol: adhC2
gene_biotype: protein_coding
description:
  Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06340
symbol: KSW11078.1
gene_biotype: protein_coding
description:
  FMN-dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06345
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: APY09_06350
symbol: clpP1_1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: APY09_06360
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: APY09_06365
symbol: tyrA
gene_biotype: protein_coding
description:
  Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06390
symbol: KSW11087.1
gene_biotype: protein_coding
description:
  Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06395
symbol: KSW11088.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system antitoxin subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06405
symbol: valS
gene_biotype: protein_coding
description:
  valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.


ensembl_gene_id: APY09_06410
symbol: argE
gene_biotype: protein_coding
description:
  Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06420
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: APY09_06430
symbol: KSW11095.1
gene_biotype: protein_coding
description:
  Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06435
symbol: KSW11096.1
gene_biotype: protein_coding
description:
  Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06460
symbol: KSW11101.1
gene_biotype: protein_coding
description:
  Growth inhibitor PemK; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06470
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: APY09_06475
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N7)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: APY09_06480
symbol: hemN
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: APY09_06500
symbol: hrcA
gene_biotype: protein_coding
description:
  HrcA family transcriptional regulator; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: APY09_06505
symbol: dnaJ
gene_biotype: protein_coding
description:
  Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]


ensembl_gene_id: APY09_06510
symbol: rsmE
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: APY09_06515
symbol: galM
gene_biotype: protein_coding
description:
  Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06520
symbol: pepC
gene_biotype: protein_coding
description:
  Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase C1 family.


ensembl_gene_id: APY09_06525
symbol: Add
gene_biotype: protein_coding
description:
  Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.


ensembl_gene_id: APY09_06535
symbol: maa
gene_biotype: protein_coding
description:
  Maltose acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06540
symbol: def_1
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: APY09_06545
symbol: pflA
gene_biotype: protein_coding
description:
  Pyruvate formate lyase-activating protein; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: APY09_06550
symbol: pflB_1
gene_biotype: protein_coding
description:
  Formate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06560
symbol: hom
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06565
symbol: thrB_1
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: APY09_06570
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: APY09_06595
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: APY09_06600
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06605
symbol: rimN
gene_biotype: protein_coding
description:
  Translation factor Sua5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUA5 family.


ensembl_gene_id: APY09_06610
symbol: mraY_1
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl pentapeptide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06620
symbol: atpB
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: APY09_06625
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: APY09_06630
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0F1 subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: APY09_06635
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1 subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: APY09_06640
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: APY09_06645
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F0F1 subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: APY09_06650
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: APY09_06655
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06665
symbol: nucS
gene_biotype: protein_coding
description:
  Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.


ensembl_gene_id: APY09_06675
symbol: nagA
gene_biotype: protein_coding
description:
  N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06700
symbol: glgB_2
gene_biotype: protein_coding
description:
  Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: APY09_06705
symbol: glgE1
gene_biotype: protein_coding
description:
  Alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.


ensembl_gene_id: APY09_06715
symbol: trpS2
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: APY09_06720
symbol: glgX_1
gene_biotype: protein_coding
description:
  Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: APY09_06725
symbol: etfB_1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06730
symbol: etfA_1
gene_biotype: protein_coding
description:
  Electron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06740
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: APY09_06750
symbol: bcp
gene_biotype: protein_coding
description:
  Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06770
symbol: KSW11156.1
gene_biotype: protein_coding
description:
  Cell wall protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06785
symbol: ideR_1
gene_biotype: protein_coding
description:
  DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06790
symbol: hit_1
gene_biotype: protein_coding
description:
  Diadenosine tetraphosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06795
symbol: leuS
gene_biotype: protein_coding
description:
  leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: APY09_06800
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06805
symbol: KSW11161.1
gene_biotype: protein_coding
description:
  N-acetyltransferase Ats1; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06810
symbol: cysE
gene_biotype: protein_coding
description:
  Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06815
symbol: cysK1
gene_biotype: protein_coding
description:
  Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: APY09_06820
symbol: yigZ
gene_biotype: protein_coding
description:
  IMPACT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06825
symbol: rpmF
gene_biotype: protein_coding
description:
  50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: APY09_06840
symbol: metF
gene_biotype: protein_coding
description:
  Methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: APY09_06845
symbol: metE_2
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: APY09_06860
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: APY09_06875
symbol: acpS
gene_biotype: protein_coding
description:
  4-phosphopantetheinyl transferase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: APY09_06880
symbol: KSW11175.1
gene_biotype: protein_coding
description:
  ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06885
symbol: accD5
gene_biotype: protein_coding
description:
  methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06890
symbol: accC
gene_biotype: protein_coding
description:
  Carboxylate--amine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06895
symbol: KSW11178.1
gene_biotype: protein_coding
description:
  biotin--acetyl-CoA-carboxylase ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06905
symbol: glcB
gene_biotype: protein_coding
description:
  PTS sugar transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06910
symbol: malQ
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06915
symbol: crr
gene_biotype: protein_coding
description:
  PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06920
symbol: ptsG
gene_biotype: protein_coding
description:
  PTS sugar transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06935
symbol: bglB_1
gene_biotype: protein_coding
description:
  Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: APY09_06955
symbol: KSW11189.1
gene_biotype: protein_coding
description:
  Beta-carotene 15,15'-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06960
symbol: lytR_1
gene_biotype: protein_coding
description:
  LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06965
symbol: rfbD
gene_biotype: protein_coding
description:
  UDP-galactopyranose mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_06985
symbol: KSW11195.1
gene_biotype: protein_coding
description:
  rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: APY09_06990
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: APY09_07010
symbol: KSW11198.1
gene_biotype: protein_coding
description:
  Glycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07015
symbol: ErpA
gene_biotype: protein_coding
description:
  Iron-sulfur cluster insertion protein ErpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.


ensembl_gene_id: APY09_07030
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: APY09_07040
symbol: KSW11204.1
gene_biotype: protein_coding
description:
  Glycerol acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07045
symbol: pfp
gene_biotype: protein_coding
description:
  Pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: APY09_07050
symbol: aroH
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II DAHP synthase family.


ensembl_gene_id: APY09_07065
symbol: ispB
gene_biotype: protein_coding
description:
  Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: APY09_07070
symbol: hrdB
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: APY09_07080
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: APY09_07085
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: APY09_07090
symbol: KSW11214.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07095
symbol: rpsP
gene_biotype: protein_coding
description:
  30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: APY09_07100
symbol: KSW11216.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0109 family.


ensembl_gene_id: APY09_07105
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: APY09_07110
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: APY09_07115
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: APY09_07120
symbol: sipS
gene_biotype: protein_coding
description:
  S26 family signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.


ensembl_gene_id: APY09_07130
symbol: KSW11222.1
gene_biotype: protein_coding
description:
  Protein often found in actinomycetes clustered with signal peptidase and/or RNaseHII; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07135
symbol: KSW11223.1
gene_biotype: protein_coding
description:
  Choloylglycine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.


ensembl_gene_id: APY09_07140
symbol: comM
gene_biotype: protein_coding
description:
  Mg chelatase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07145
symbol: smf
gene_biotype: protein_coding
description:
  DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07150
symbol: xerC_1
gene_biotype: protein_coding
description:
  Recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: APY09_07155
symbol: rpsB
gene_biotype: protein_coding
description:
  30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: APY09_07160
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: APY09_07170
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome-recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: APY09_07175
symbol: cdsA
gene_biotype: protein_coding
description:
  Phosphatidate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDS family.


ensembl_gene_id: APY09_07180
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: APY09_07190
symbol: KSW11233.1
gene_biotype: protein_coding
description:
  Cell division protein DivIVA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07195
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: APY09_07200
symbol: mmpA
gene_biotype: protein_coding
description:
  Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07205
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: APY09_07220
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]


ensembl_gene_id: APY09_07235
symbol: KSW11241.1
gene_biotype: protein_coding
description:
  Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07240
symbol: aspA
gene_biotype: protein_coding
description:
  Aspartate ammonia-lyase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07245
symbol: KSW11243.1
gene_biotype: protein_coding
description:
  Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07250
symbol: aceE
gene_biotype: protein_coding
description:
  Alpha-ketoglutarate dehydrogenase; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: APY09_07270
symbol: menE_1
gene_biotype: protein_coding
description:
  AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07275
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: APY09_07280
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: APY09_07300
symbol: YaaA
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0246 family.


ensembl_gene_id: APY09_07305
symbol: ppgK_1
gene_biotype: protein_coding
description:
  Polyphosphate glucokinase; Catalyzes the phosphorylation of glucose using polyphosphate or ATP as the phosphoryl donor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07315
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: APY09_07320
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: APY09_07325
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: APY09_07330
symbol: KSW11258.1
gene_biotype: protein_coding
description:
  Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07340
symbol: argG
gene_biotype: protein_coding
description:
  Argininosuccinate synthase; Catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: APY09_07345
symbol: KSW11261.1
gene_biotype: protein_coding
description:
  Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07350
symbol: argH
gene_biotype: protein_coding
description:
  Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07355
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: APY09_07380
symbol: KSW10328.1
gene_biotype: protein_coding
description:
  dUTP diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07385
symbol: tlyA
gene_biotype: protein_coding
description:
  Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07390
symbol: ppnK
gene_biotype: protein_coding
description:
  ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: APY09_07400
symbol: KSW10332.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07410
symbol: KSW10673.1
gene_biotype: protein_coding
description:
  ADP-ribose diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07420
symbol: SufB
gene_biotype: protein_coding
description:
  Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07430
symbol: sufC
gene_biotype: protein_coding
description:
  Fe-S cluster assembly ATPase SufC; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07435
symbol: sufS
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: APY09_07440
symbol: nifU
gene_biotype: protein_coding
description:
  Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07445
symbol: KSW10340.1
gene_biotype: protein_coding
description:
  Metal-sulfur cluster biosynthetic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07450
symbol: fadD_2
gene_biotype: protein_coding
description:
  Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07455
symbol: KSW10342.1
gene_biotype: protein_coding
description:
  Neutral zinc metallopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07460
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: APY09_07465
symbol: yhhQ
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: APY09_07475
symbol: tcyC
gene_biotype: protein_coding
description:
  Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07485
symbol: artP_1
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: APY09_07505
symbol: dlaT
gene_biotype: protein_coding
description:
  Dihydrolipoamide acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07510
symbol: lpd
gene_biotype: protein_coding
description:
  Dihydrolipoamide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07520
symbol: trmL
gene_biotype: protein_coding
description:
  RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: APY09_07525
symbol: ybcL
gene_biotype: protein_coding
description:
  PEBP family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07535
symbol: dinB_2
gene_biotype: protein_coding
description:
  ImpB/MucB/SamB family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07545
symbol: gutB
gene_biotype: protein_coding
description:
  Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07550
symbol: dnaE_2
gene_biotype: protein_coding
description:
  DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.


ensembl_gene_id: APY09_07575
symbol: KSW10361.1
gene_biotype: protein_coding
description:
  phosphoribosyl-ATP diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07590
symbol: yhdN
gene_biotype: protein_coding
description:
  Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07595
symbol: KSW10365.1
gene_biotype: protein_coding
description:
  Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07605
symbol: mpa
gene_biotype: protein_coding
description:
  Proteasome ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07610
symbol: dop
gene_biotype: protein_coding
description:
  Proteasome accessory factor PafA2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07615
symbol: pup
gene_biotype: protein_coding
description:
  Ubiquitin; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family.


ensembl_gene_id: APY09_07620
symbol: pafA
gene_biotype: protein_coding
description:
  Pup--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07630
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: APY09_07635
symbol: aroK_1
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: APY09_07640
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: APY09_07645
symbol: aroK_2
gene_biotype: protein_coding
description:
  Shikimate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07650
symbol: efp
gene_biotype: protein_coding
description:
  Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: APY09_07655
symbol: nusB
gene_biotype: protein_coding
description:
  Antitermination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: APY09_07665
symbol: uhpT
gene_biotype: protein_coding
description:
  Antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07670
symbol: suhB
gene_biotype: protein_coding
description:
  Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07680
symbol: pyrR
gene_biotype: protein_coding
description:
  Transcriptional regulator; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.


ensembl_gene_id: APY09_07685
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: APY09_07690
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: APY09_07695
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarA family.


ensembl_gene_id: APY09_07700
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl phosphate synthase large subunit; Four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07705
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OMP decarboxylase family. Type 2 subfamily.


ensembl_gene_id: APY09_07720
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: APY09_07725
symbol: coaBC
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: APY09_07730
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: APY09_07735
symbol: KSW10393.1
gene_biotype: protein_coding
description:
  Vitamin K epoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07740
symbol: priA_2
gene_biotype: protein_coding
description:
  Primosomal protein N; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07745
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: APY09_07750
symbol: rsmB
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: APY09_07755
symbol: rpe
gene_biotype: protein_coding
description:
  Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: APY09_07785
symbol: lnt
gene_biotype: protein_coding
description:
  Acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: APY09_07790
symbol: KSW10404.1
gene_biotype: protein_coding
description:
  Polyprenol monophosphomannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07795
symbol: rbpA
gene_biotype: protein_coding
description:
  Electron transporter; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.


ensembl_gene_id: APY09_07805
symbol: dnaK_2
gene_biotype: protein_coding
description:
  Chaperone HscA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family.


ensembl_gene_id: APY09_07845
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.


ensembl_gene_id: APY09_07850
symbol: der
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: APY09_07855
symbol: tag
gene_biotype: protein_coding
description:
  3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07880
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07885
symbol: tyrC
gene_biotype: protein_coding
description:
  Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07890
symbol: rluB
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: APY09_07895
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: APY09_07900
symbol: scpA
gene_biotype: protein_coding
description:
  Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: APY09_07910
symbol: xerD
gene_biotype: protein_coding
description:
  Recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: APY09_07915
symbol: tkt
gene_biotype: protein_coding
description:
  Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.


ensembl_gene_id: APY09_07920
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: APY09_07925
symbol: KSW10430.1
gene_biotype: protein_coding
description:
  Oxppcycle protein OpcA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_07940
symbol: SecG
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: APY09_07945
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: APY09_07950
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: APY09_07955
symbol: gap
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: APY09_07965
symbol: YvcK
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: APY09_07975
symbol: purT
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.


ensembl_gene_id: APY09_07980
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: APY09_07985
symbol: glnA_3
gene_biotype: protein_coding
description:
  Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08000
symbol: KSW10444.1
gene_biotype: protein_coding
description:
  Polysaccharide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08005
symbol: uvrA_2
gene_biotype: protein_coding
description:
  ABC-ATPase UvrA; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: APY09_08020
symbol: alx_1
gene_biotype: protein_coding
description:
  Tellurium resistance protein TerC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08030
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: APY09_08035
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: APY09_08040
symbol: brnQ
gene_biotype: protein_coding
description:
  Branched-chain amino acid transporter; Component of the transport system for branched-chain amino acids.


ensembl_gene_id: APY09_08045
symbol: rpsA
gene_biotype: protein_coding
description:
  30S ribosomal protein S1; In Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08050
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: APY09_08055
symbol: KSW10453.1
gene_biotype: protein_coding
description:
  Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08075
symbol: pyk
gene_biotype: protein_coding
description:
  Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08080
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: APY09_08085
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: APY09_08090
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: APY09_08095
symbol: trpC
gene_biotype: protein_coding
description:
  Indole-3-glycerol phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TrpC family.


ensembl_gene_id: APY09_08100
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08105
symbol: KSW10461.1
gene_biotype: protein_coding
description:
  Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08110
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the shikimate dehydrogenase family.


ensembl_gene_id: APY09_08115
symbol: yceG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: APY09_08120
symbol: yrrK
gene_biotype: protein_coding
description:
  RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: APY09_08125
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: APY09_08130
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: APY09_08140
symbol: KSW10466.1
gene_biotype: protein_coding
description:
  Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08150
symbol: fecE
gene_biotype: protein_coding
description:
  Iron-dicitrate transporter ATP-binding subunit; Part of the FecBCDE citrate-dependent iron (III) transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08155
symbol: fepG
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: APY09_08165
symbol: yfiY
gene_biotype: protein_coding
description:
  Iron siderophore ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08180
symbol: aspS
gene_biotype: protein_coding
description:
  aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: APY09_08190
symbol: cshA_2
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.


ensembl_gene_id: APY09_08205
symbol: hisS
gene_biotype: protein_coding
description:
  histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08210
symbol: KSW10479.1
gene_biotype: protein_coding
description:
  MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08220
symbol: relA
gene_biotype: protein_coding
description:
  GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: APY09_08225
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: APY09_08230
symbol: secF
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: APY09_08235
symbol: secDF
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: APY09_08240
symbol: KSW10485.1
gene_biotype: protein_coding
description:
  Preprotein translocase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08245
symbol: ruvB
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: APY09_08250
symbol: ruvA
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: APY09_08255
symbol: ruvC
gene_biotype: protein_coding
description:
  Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: APY09_08260
symbol: pdxT
gene_biotype: protein_coding
description:
  Glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: APY09_08265
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: APY09_08275
symbol: KSW10492.1
gene_biotype: protein_coding
description:
  Histidine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08285
symbol: KSW10494.1
gene_biotype: protein_coding
description:
  Histidine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: APY09_08290
symbol: glnE
gene_biotype: protein_coding
description:
  Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]


ensembl_gene_id: APY09_08305
symbol: KSW10498.1
gene_biotype: protein_coding
description:
  Nodulation efficiency protein NfeD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08310
symbol: fbpC_1
gene_biotype: protein_coding
description:
  Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08320
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: APY09_08325
symbol: serB
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08330
symbol: rppH
gene_biotype: protein_coding
description:
  NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08350
symbol: pimA_3
gene_biotype: protein_coding
description:
  Alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08355
symbol: KSW10508.1
gene_biotype: protein_coding
description:
  Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08365
symbol: KSW10510.1
gene_biotype: protein_coding
description:
  HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08370
symbol: thrS
gene_biotype: protein_coding
description:
  threonine--tRNA ligase; Catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: APY09_08395
symbol: KSW10516.1
gene_biotype: protein_coding
description:
  Adventurous gliding motility protein AgmX; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08450
symbol: rnd
gene_biotype: protein_coding
description:
  3'-5' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08455
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: APY09_08470
symbol: KSW10525.1
gene_biotype: protein_coding
description:
  TRAM domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: APY09_08480
symbol: trkA_2
gene_biotype: protein_coding
description:
  Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08505
symbol: KSW10532.1
gene_biotype: protein_coding
description:
  dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08515
symbol: KSW10534.1
gene_biotype: protein_coding
description:
  Nucleotide pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08525
symbol: gyrA_2
gene_biotype: protein_coding
description:
  DNA topoisomerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08530
symbol: KSW10537.1
gene_biotype: protein_coding
description:
  Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08535
symbol: xylE_1
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: APY09_08550
symbol: gyrB_2
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08565
symbol: KSW10544.1
gene_biotype: protein_coding
description:
  Hemin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08580
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: APY09_08585
symbol: ndkA
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: APY09_08590
symbol: dhaM
gene_biotype: protein_coding
description:
  Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08605
symbol: fgs
gene_biotype: protein_coding
description:
  Tetrahydrofolate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08620
symbol: ileS
gene_biotype: protein_coding
description:
  Isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: APY09_08640
symbol: betC
gene_biotype: protein_coding
description:
  Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08650
symbol: chuR
gene_biotype: protein_coding
description:
  Anaerobic sulfatase maturase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08675
symbol: glpC
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08680
symbol: glpB
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08685
symbol: glpA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08690
symbol: pepO
gene_biotype: protein_coding
description:
  Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08720
symbol: ybeB
gene_biotype: protein_coding
description:
  Ribosome silencing factor; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: APY09_08725
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: APY09_08730
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: APY09_08735
symbol: proB
gene_biotype: protein_coding
description:
  Gamma-glutamyl kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: APY09_08740
symbol: obgE
gene_biotype: protein_coding
description:
  GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: APY09_08745
symbol: rpmA
gene_biotype: protein_coding
description:
  50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: APY09_08750
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: APY09_08760
symbol: appC
gene_biotype: protein_coding
description:
  Cytochrome BD ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08765
symbol: cydB
gene_biotype: protein_coding
description:
  Cytochrome C oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08770
symbol: cydD
gene_biotype: protein_coding
description:
  Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08795
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: APY09_08810
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: APY09_08815
symbol: rsmD
gene_biotype: protein_coding
description:
  16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08820
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08830
symbol: rpmB
gene_biotype: protein_coding
description:
  50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: APY09_08835
symbol: putA
gene_biotype: protein_coding
description:
  1-pyrroline-5-carboxylate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08855
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: APY09_08865
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: APY09_08870
symbol: rpmI
gene_biotype: protein_coding
description:
  50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: APY09_08875
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: APY09_08885
symbol: priA_1
gene_biotype: protein_coding
description:
  Catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08900
symbol: dnaE_1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08905
symbol: rluD
gene_biotype: protein_coding
description:
  RNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: APY09_08910
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: APY09_08925
symbol: sepF
gene_biotype: protein_coding
description:
  Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: APY09_08935
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: APY09_08940
symbol: KSW10611.1
gene_biotype: protein_coding
description:
  Cell division protein FtsQ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_08950
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: APY09_08955
symbol: ftsW_2
gene_biotype: protein_coding
description:
  Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.


ensembl_gene_id: APY09_08960
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: APY09_08965
symbol: mraY_2
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: APY09_08970
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: APY09_08985
symbol: rsmH
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: APY09_08990
symbol: MraZ
gene_biotype: protein_coding
description:
  Division/cell wall cluster transcriptional repressor MraZ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09000
symbol: dinB_1
gene_biotype: protein_coding
description:
  DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: APY09_09020
symbol: serA
gene_biotype: protein_coding
description:
  D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: APY09_09030
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: APY09_09035
symbol: KSW10630.1
gene_biotype: protein_coding
description:
  Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09045
symbol: lexA
gene_biotype: protein_coding
description:
  LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: APY09_09050
symbol: ldh2
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.


ensembl_gene_id: APY09_09060
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: APY09_09070
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine.


ensembl_gene_id: APY09_09075
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: APY09_09090
symbol: miaB
gene_biotype: protein_coding
description:
  (dimethylallyl)adenosine tRNA methylthiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: APY09_09095
symbol: ygaD
gene_biotype: protein_coding
description:
  Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.


ensembl_gene_id: APY09_09105
symbol: recA
gene_biotype: protein_coding
description:
  DNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: APY09_09120
symbol: PgsA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09125
symbol: spoIIIE
gene_biotype: protein_coding
description:
  Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FtsK/SpoIIIE/SftA family.


ensembl_gene_id: APY09_09135
symbol: rnj
gene_biotype: protein_coding
description:
  Ribonuclease; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: APY09_09145
symbol: KSW10649.1
gene_biotype: protein_coding
description:
  Multidrug ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09165
symbol: dapA_1
gene_biotype: protein_coding
description:
  4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: APY09_09175
symbol: dapB
gene_biotype: protein_coding
description:
  4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: APY09_09180
symbol: ptrA
gene_biotype: protein_coding
description:
  Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.


ensembl_gene_id: APY09_09185
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: APY09_09190
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: APY09_09195
symbol: ribF
gene_biotype: protein_coding
description:
  Bifunctional riboflavin kinase/FMN adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.


ensembl_gene_id: APY09_09200
symbol: truB
gene_biotype: protein_coding
description:
  Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: APY09_09205
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: APY09_09210
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: APY09_09215
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription elongation factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: APY09_09220
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: APY09_09230
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily.


ensembl_gene_id: APY09_09240
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: APY09_09245
symbol: ilvH
gene_biotype: protein_coding
description:
  Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09250
symbol: ilvB1
gene_biotype: protein_coding
description:
  Acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09300
symbol: APY09_09300
gene_biotype: protein_coding
description:
  CHAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09625
symbol: KSW10321.1
gene_biotype: protein_coding
description:
  Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09640
symbol: KSW10256.1
gene_biotype: protein_coding
description:
  Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09655
symbol: ybjQ
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0145 family.


ensembl_gene_id: APY09_09680
symbol: ygfU
gene_biotype: protein_coding
description:
  Uracil-xanthine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09690
symbol: KSW10266.1
gene_biotype: protein_coding
description:
  L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09695
symbol: AraA
gene_biotype: protein_coding
description:
  L-arabinose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09715
symbol: hup
gene_biotype: protein_coding
description:
  Integration host factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: APY09_09720
symbol: gsiA_4
gene_biotype: protein_coding
description:
  Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.


ensembl_gene_id: APY09_09745
symbol: KSW10277.1
gene_biotype: protein_coding
description:
  Microcystin degradation protein MlrC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09755
symbol: cutC
gene_biotype: protein_coding
description:
  Copper homeostasis protein CutC; Participates in the control of copper homeostasis. Belongs to the CutC family.


ensembl_gene_id: APY09_09760
symbol: nagB
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.


ensembl_gene_id: APY09_09775
symbol: KSW10282.1
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: APY09_09780
symbol: clpS
gene_biotype: protein_coding
description:
  Clp protease ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: APY09_09810
symbol: rdgB
gene_biotype: protein_coding
description:
  dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: APY09_09815
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: APY09_09820
symbol: nudC
gene_biotype: protein_coding
description:
  NADH pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09825
symbol: rep
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09840
symbol: ylbL
gene_biotype: protein_coding
description:
  Peptidase S16; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09875
symbol: lysP
gene_biotype: protein_coding
description:
  Gamma-aminobutyrate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09895
symbol: KSW10302.1
gene_biotype: protein_coding
description:
  Protein CrcB-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09910
symbol: KSW10304.1
gene_biotype: protein_coding
description:
  NAD(P)H dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09920
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: APY09_09930
symbol: folA
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09935
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: APY09_09940
symbol: KSW10310.1
gene_biotype: protein_coding
description:
  Osmotically inducible protein OsmC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09960
symbol: KSW10314.1
gene_biotype: protein_coding
description:
  Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: APY09_09965
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: APY09_09975
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: APY09_09980
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: APY09_09985
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: APY09_09990
symbol: maeB
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


