# geneInfo

ensembl_gene_id: HMPREF3023_00020
symbol: HMPREF3023_00020
gene_biotype: protein_coding
description:
  Serine recombinase; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00025
symbol: OFO63424.1
gene_biotype: protein_coding
description:
  ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00030
symbol: OFO63425.1
gene_biotype: protein_coding
description:
  Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00035
symbol: OFO63426.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00040
symbol: OFO63427.1
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00050
symbol: OFO63429.1
gene_biotype: protein_coding
description:
  TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00060
symbol: HMPREF3023_00060
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3023_00065
symbol: OFO63390.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00075
symbol: OFO63392.1
gene_biotype: protein_coding
description:
  Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00080
symbol: OFO63393.1
gene_biotype: protein_coding
description:
  Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00090
symbol: OFO63395.1
gene_biotype: protein_coding
description:
  Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00095
symbol: OFO63396.1
gene_biotype: protein_coding
description:
  Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00100
symbol: OFO63397.1
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00105
symbol: OFO63398.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3023_00110
symbol: OFO63399.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00115
symbol: OFO63400.1
gene_biotype: protein_coding
description:
  DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00120
symbol: OFO63401.1
gene_biotype: protein_coding
description:
  DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00125
symbol: OFO63402.1
gene_biotype: protein_coding
description:
  Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00130
symbol: OFO63403.1
gene_biotype: protein_coding
description:
  DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00145
symbol: OFO63406.1
gene_biotype: protein_coding
description:
  Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00150
symbol: OFO63407.1
gene_biotype: protein_coding
description:
  Copper amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00165
symbol: OFO63414.1
gene_biotype: protein_coding
description:
  Conjugal transfer protein TraE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00170
symbol: OFO63410.1
gene_biotype: protein_coding
description:
  Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00195
symbol: HMPREF3023_00195
gene_biotype: protein_coding
description:
  Single-stranded DNA-binding protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00215
symbol: OFO60811.1
gene_biotype: protein_coding
description:
  Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00230
symbol: OFO60814.1
gene_biotype: protein_coding
description:
  Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00255
symbol: OFO60819.1
gene_biotype: protein_coding
description:
  Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00265
symbol: OFO60821.1
gene_biotype: protein_coding
description:
  Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00275
symbol: OFO60823.1
gene_biotype: protein_coding
description:
  Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00290
symbol: OFO60826.1
gene_biotype: protein_coding
description:
  Phage head-tail adapter protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00295
symbol: OFO60827.1
gene_biotype: protein_coding
description:
  AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00300
symbol: OFO60828.1
gene_biotype: protein_coding
description:
  Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00305
symbol: OFO60829.1
gene_biotype: protein_coding
description:
  Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S14 family.


ensembl_gene_id: HMPREF3023_00310
symbol: OFO60830.1
gene_biotype: protein_coding
description:
  Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00315
symbol: OFO60831.1
gene_biotype: protein_coding
description:
  Cell filamentation protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00320
symbol: OFO60832.1
gene_biotype: protein_coding
description:
  Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00335
symbol: OFO60835.1
gene_biotype: protein_coding
description:
  Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00340
symbol: OFO60836.1
gene_biotype: protein_coding
description:
  DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: HMPREF3023_00345
symbol: OFO60837.1
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00355
symbol: OFO60839.1
gene_biotype: protein_coding
description:
  HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00360
symbol: OFO60840.1
gene_biotype: protein_coding
description:
  AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00365
symbol: OFO60841.1
gene_biotype: protein_coding
description:
  Cytotoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00375
symbol: OFO60843.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00380
symbol: OFO60844.1
gene_biotype: protein_coding
description:
  Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00390
symbol: OFO60846.1
gene_biotype: protein_coding
description:
  DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00405
symbol: OFO60849.1
gene_biotype: protein_coding
description:
  XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00410
symbol: OFO60850.1
gene_biotype: protein_coding
description:
  ATP synthase F0 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00435
symbol: OFO60855.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00465
symbol: HMPREF3023_00465
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3023_00470
symbol: OFO59940.1
gene_biotype: protein_coding
description:
  Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: HMPREF3023_00475
symbol: hutG
gene_biotype: protein_coding
description:
  Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.


ensembl_gene_id: HMPREF3023_00485
symbol: OFO59943.1
gene_biotype: protein_coding
description:
  ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: HMPREF3023_00490
symbol: OFO59944.1
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00510
symbol: OFO59948.1
gene_biotype: protein_coding
description:
  2-Cys peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: HMPREF3023_00515
symbol: rlmH
gene_biotype: protein_coding
description:
  23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: HMPREF3023_00530
symbol: OFO59952.1
gene_biotype: protein_coding
description:
  Protein gufA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00540
symbol: OFO59954.1
gene_biotype: protein_coding
description:
  Peptidase S26; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00545
symbol: OFO59955.1
gene_biotype: protein_coding
description:
  Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: HMPREF3023_00550
symbol: OFO59956.1
gene_biotype: protein_coding
description:
  GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00555
symbol: hisS
gene_biotype: protein_coding
description:
  histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00560
symbol: OFO59958.1
gene_biotype: protein_coding
description:
  Sodium:glutamate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00565
symbol: OFO59959.1
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: HMPREF3023_00595
symbol: OFO59965.1
gene_biotype: protein_coding
description:
  Ornithine cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00600
symbol: OFO59966.1
gene_biotype: protein_coding
description:
  2-hydroxyglutaryl-CoA dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00615
symbol: OFO59969.1
gene_biotype: protein_coding
description:
  glutaconyl-CoA decarboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00620
symbol: OFO59970.1
gene_biotype: protein_coding
description:
  Glutaconate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00630
symbol: OFO59972.1
gene_biotype: protein_coding
description:
  glutaconyl-CoA decarboxylase subunit beta; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).


ensembl_gene_id: HMPREF3023_00635
symbol: OFO59973.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00640
symbol: OFO59974.1
gene_biotype: protein_coding
description:
  Sodium pump decarboxylase subunit gamma; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.


ensembl_gene_id: HMPREF3023_00650
symbol: HMPREF3023_00650
gene_biotype: protein_coding
description:
  Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00660
symbol: rsmA
gene_biotype: protein_coding
description:
  16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: HMPREF3023_00665
symbol: rnmV
gene_biotype: protein_coding
description:
  Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.


ensembl_gene_id: HMPREF3023_00670
symbol: OFO59979.1
gene_biotype: protein_coding
description:
  Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00675
symbol: metG
gene_biotype: protein_coding
description:
  methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: HMPREF3023_00690
symbol: OFO59983.1
gene_biotype: protein_coding
description:
  Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00705
symbol: HMPREF3023_00705
gene_biotype: protein_coding
description:
  ABC transporter substrate-binding protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00710
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: HMPREF3023_00715
symbol: OFO59751.1
gene_biotype: protein_coding
description:
  Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00720
symbol: OFO59752.1
gene_biotype: protein_coding
description:
  Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00730
symbol: OFO59754.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00745
symbol: OFO59757.1
gene_biotype: protein_coding
description:
  Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00750
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: HMPREF3023_00755
symbol: OFO59759.1
gene_biotype: protein_coding
description:
  CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00760
symbol: hppA
gene_biotype: protein_coding
description:
  Sodium-translocating pyrophosphatase; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.


ensembl_gene_id: HMPREF3023_00765
symbol: OFO59761.1
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: HMPREF3023_00770
symbol: OFO59762.1
gene_biotype: protein_coding
description:
  Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00775
symbol: OFO59763.1
gene_biotype: protein_coding
description:
  Type I glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF3023_00780
symbol: OFO59764.1
gene_biotype: protein_coding
description:
  Polyphosphate--nucleotide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00785
symbol: metAA
gene_biotype: protein_coding
description:
  Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.


ensembl_gene_id: HMPREF3023_00790
symbol: OFO59765.1
gene_biotype: protein_coding
description:
  citrate-ACP transferase, the alpha subunit catalyzes the formation of (3S)-citryl-CoA from acetyl-CoA and citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00795
symbol: OFO59766.1
gene_biotype: protein_coding
description:
  Citrate lyase subunit beta; citryl-ACP lyase; catalyzes the formation of acetate and oxaloacetate from citrate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: HMPREF3023_00805
symbol: OFO59768.1
gene_biotype: protein_coding
description:
  Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00810
symbol: OFO59769.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF3023_00815
symbol: OFO59770.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00825
symbol: OFO59772.1
gene_biotype: protein_coding
description:
  Hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00830
symbol: OFO59891.1
gene_biotype: protein_coding
description:
  Converts isocitrate to alpha ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the isocitrate and isopropylmalate dehydrogenases family.


ensembl_gene_id: HMPREF3023_00835
symbol: OFO59773.1
gene_biotype: protein_coding
description:
  ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00840
symbol: OFO59774.1
gene_biotype: protein_coding
description:
  [citrate (pro-3S)-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.


ensembl_gene_id: HMPREF3023_00845
symbol: OFO59775.1
gene_biotype: protein_coding
description:
  triphosphoribosyl-dephospho-CoA synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00850
symbol: OFO59776.1
gene_biotype: protein_coding
description:
  Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00860
symbol: OFO59778.1
gene_biotype: protein_coding
description:
  Mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00875
symbol: OFO59781.1
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: HMPREF3023_00880
symbol: OFO59782.1
gene_biotype: protein_coding
description:
  N-acetylmannosaminyltransferase; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.


ensembl_gene_id: HMPREF3023_00890
symbol: acpS
gene_biotype: protein_coding
description:
  Holo; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Belongs to the NnrD/CARKD family.


ensembl_gene_id: HMPREF3023_00895
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: HMPREF3023_00900
symbol: OFO59786.1
gene_biotype: protein_coding
description:
  Aminoacyl-histidine dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00905
symbol: OFO59892.1
gene_biotype: protein_coding
description:
  Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00910
symbol: OFO59787.1
gene_biotype: protein_coding
description:
  Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00915
symbol: OFO59788.1
gene_biotype: protein_coding
description:
  Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00930
symbol: OFO59791.1
gene_biotype: protein_coding
description:
  Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00935
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: HMPREF3023_00945
symbol: OFO59794.1
gene_biotype: protein_coding
description:
  Potassium transporter KefA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00950
symbol: OFO59795.1
gene_biotype: protein_coding
description:
  Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00955
symbol: OFO59796.1
gene_biotype: protein_coding
description:
  Cobalt-zinc-cadmium resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: HMPREF3023_00960
symbol: OFO59797.1
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiJ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00965
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: HMPREF3023_00970
symbol: OFO59799.1
gene_biotype: protein_coding
description:
  Chromate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00980
symbol: OFO59801.1
gene_biotype: protein_coding
description:
  ADP-ribosylglycohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00990
symbol: OFO59803.1
gene_biotype: protein_coding
description:
  Erythromycin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_00995
symbol: eutD
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; In Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01000
symbol: OFO59805.1
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: HMPREF3023_01005
symbol: OFO59806.1
gene_biotype: protein_coding
description:
  MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01025
symbol: HMPREF3023_01025
gene_biotype: protein_coding
description:
  Serine dehydrogenasease; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01040
symbol: HMPREF3023_01040
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01050
symbol: HMPREF3023_01050
gene_biotype: protein_coding
description:
  Hypothetical protein; Internal stop; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01085
symbol: OFO59819.1
gene_biotype: protein_coding
description:
  Surface protein PspC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01110
symbol: HMPREF3023_01110
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01175
symbol: OFO59893.1
gene_biotype: protein_coding
description:
  Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01225
symbol: OFO59844.1
gene_biotype: protein_coding
description:
  DNA replication protein DnaD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01300
symbol: OFO59857.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.


ensembl_gene_id: HMPREF3023_01310
symbol: OFO59858.1
gene_biotype: protein_coding
description:
  Teicoplanin resistance protein VanZ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01315
symbol: OFO59859.1
gene_biotype: protein_coding
description:
  Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01330
symbol: OFO59861.1
gene_biotype: protein_coding
description:
  Carbon starvation protein CstA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01335
symbol: OFO59862.1
gene_biotype: protein_coding
description:
  Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alkaline phosphatase family.


ensembl_gene_id: HMPREF3023_01340
symbol: hpf
gene_biotype: protein_coding
description:
  RNA-binding protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: HMPREF3023_01355
symbol: OFO59866.1
gene_biotype: protein_coding
description:
  Histidine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01365
symbol: OFO59868.1
gene_biotype: protein_coding
description:
  ArsC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: HMPREF3023_01375
symbol: HMPREF3023_01375
gene_biotype: protein_coding
description:
  Arsenical-resistance protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01385
symbol: rpsR
gene_biotype: protein_coding
description:
  30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: HMPREF3023_01390
symbol: OFO59871.1
gene_biotype: protein_coding
description:
  Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01405
symbol: pepT
gene_biotype: protein_coding
description:
  Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: HMPREF3023_01415
symbol: OFO59876.1
gene_biotype: protein_coding
description:
  Rubrerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01425
symbol: OFO59878.1
gene_biotype: protein_coding
description:
  YaiI/YqxD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01430
symbol: OFO59879.1
gene_biotype: protein_coding
description:
  Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01455
symbol: OFO59884.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01460
symbol: OFO59885.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01465
symbol: OFO59886.1
gene_biotype: protein_coding
description:
  Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01475
symbol: OFO59888.1
gene_biotype: protein_coding
description:
  ACT domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0237 family.


ensembl_gene_id: HMPREF3023_01535
symbol: OFO62044.1
gene_biotype: protein_coding
description:
  Sodium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.


ensembl_gene_id: HMPREF3023_01540
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: HMPREF3023_01545
symbol: OFO62046.1
gene_biotype: protein_coding
description:
  Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01550
symbol: OFO62047.1
gene_biotype: protein_coding
description:
  Peptidase M29; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01560
symbol: OFO62049.1
gene_biotype: protein_coding
description:
  Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01565
symbol: OFO62050.1
gene_biotype: protein_coding
description:
  DNA processing protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01570
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: HMPREF3023_01575
symbol: OFO62052.1
gene_biotype: protein_coding
description:
  Secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01580
symbol: OFO62053.1
gene_biotype: protein_coding
description:
  Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01585
symbol: OFO62054.1
gene_biotype: protein_coding
description:
  Type IV pilin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01590
symbol: OFO62055.1
gene_biotype: protein_coding
description:
  Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01600
symbol: OFO62057.1
gene_biotype: protein_coding
description:
  Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01605
symbol: OFO62058.1
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01610
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: HMPREF3023_01615
symbol: OFO62060.1
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: HMPREF3023_01635
symbol: OFO62061.1
gene_biotype: protein_coding
description:
  Heptaprenyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01640
symbol: OFO62062.1
gene_biotype: protein_coding
description:
  Septum formation inhibitor Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: HMPREF3023_01645
symbol: OFO62063.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0758 family.


ensembl_gene_id: HMPREF3023_01650
symbol: OFO62064.1
gene_biotype: protein_coding
description:
  GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01660
symbol: OFO62066.1
gene_biotype: protein_coding
description:
  N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01680
symbol: efp
gene_biotype: protein_coding
description:
  Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: HMPREF3023_01690
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: HMPREF3023_01695
symbol: OFO62072.1
gene_biotype: protein_coding
description:
  DUF4153 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01705
symbol: OFO62074.1
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of pyrophosphate to phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01710
symbol: OFO62103.1
gene_biotype: protein_coding
description:
  Flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01715
symbol: OFO62075.1
gene_biotype: protein_coding
description:
  NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01720
symbol: OFO62076.1
gene_biotype: protein_coding
description:
  Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01725
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: HMPREF3023_01730
symbol: glnQ
gene_biotype: protein_coding
description:
  Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01735
symbol: OFO62079.1
gene_biotype: protein_coding
description:
  Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01745
symbol: argG
gene_biotype: protein_coding
description:
  Argininosuccinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: HMPREF3023_01750
symbol: argH
gene_biotype: protein_coding
description:
  Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01755
symbol: OFO62083.1
gene_biotype: protein_coding
description:
  ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01765
symbol: OFO62085.1
gene_biotype: protein_coding
description:
  butyryl-CoA:acetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01770
symbol: OFO62086.1
gene_biotype: protein_coding
description:
  CarD family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01780
symbol: OFO62088.1
gene_biotype: protein_coding
description:
  Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01800
symbol: OFO62092.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: HMPREF3023_01805
symbol: OFO62093.1
gene_biotype: protein_coding
description:
  Purine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01810
symbol: crcB
gene_biotype: protein_coding
description:
  Chromosome condensation protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: HMPREF3023_01825
symbol: OFO62097.1
gene_biotype: protein_coding
description:
  Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01830
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: HMPREF3023_01835
symbol: hprK
gene_biotype: protein_coding
description:
  HPr kinase/phosphorylase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). The two antagonistic activities of HprK/P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon [...]


ensembl_gene_id: HMPREF3023_01840
symbol: OFO62100.1
gene_biotype: protein_coding
description:
  Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01845
symbol: fusA
gene_biotype: protein_coding
description:
  Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: HMPREF3023_01850
symbol: rpsG
gene_biotype: protein_coding
description:
  30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: HMPREF3023_01855
symbol: rpsL
gene_biotype: protein_coding
description:
  30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: HMPREF3023_01875
symbol: OFO61890.1
gene_biotype: protein_coding
description:
  Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01880
symbol: OFO61891.1
gene_biotype: protein_coding
description:
  Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: HMPREF3023_01885
symbol: OFO61892.1
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: HMPREF3023_01890
symbol: OFO61893.1
gene_biotype: protein_coding
description:
  Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01905
symbol: OFO61905.1
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01910
symbol: OFO61896.1
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01920
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.


ensembl_gene_id: HMPREF3023_01925
symbol: OFO61899.1
gene_biotype: protein_coding
description:
  Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01940
symbol: OFO61901.1
gene_biotype: protein_coding
description:
  LemA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01945
symbol: thiI
gene_biotype: protein_coding
description:
  tRNA sulfurtransferase ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.


ensembl_gene_id: HMPREF3023_01950
symbol: OFO61903.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01955
symbol: OFO61904.1
gene_biotype: protein_coding
description:
  Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_01990
symbol: OFO61478.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: HMPREF3023_01995
symbol: OFO61479.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02005
symbol: argS
gene_biotype: protein_coding
description:
  arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02010
symbol: mutS2
gene_biotype: protein_coding
description:
  Recombination and DNA strand exchange inhibitor protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: HMPREF3023_02015
symbol: OFO61483.1
gene_biotype: protein_coding
description:
  Peptidase U32; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02020
symbol: OFO61484.1
gene_biotype: protein_coding
description:
  Homogentisate 1,2-dioxygenase; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: HMPREF3023_02025
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: HMPREF3023_02030
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase subunit alpha; Catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: HMPREF3023_02035
symbol: OFO61487.1
gene_biotype: protein_coding
description:
  Antitoxin HicB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02045
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: HMPREF3023_02050
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.


ensembl_gene_id: HMPREF3023_02055
symbol: OFO61490.1
gene_biotype: protein_coding
description:
  RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02080
symbol: HMPREF3023_02080
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02135
symbol: HMPREF3023_02135
gene_biotype: protein_coding
description:
  ATPase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02140
symbol: OFO61371.1
gene_biotype: protein_coding
description:
  PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02150
symbol: OFO61373.1
gene_biotype: protein_coding
description:
  Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02155
symbol: OFO61374.1
gene_biotype: protein_coding
description:
  Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02165
symbol: OFO61376.1
gene_biotype: protein_coding
description:
  3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02170
symbol: OFO61377.1
gene_biotype: protein_coding
description:
  Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02175
symbol: OFO61378.1
gene_biotype: protein_coding
description:
  Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02185
symbol: OFO61380.1
gene_biotype: protein_coding
description:
  Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02200
symbol: OFO61383.1
gene_biotype: protein_coding
description:
  Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02205
symbol: OFO61384.1
gene_biotype: protein_coding
description:
  GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02215
symbol: OFO61386.1
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02220
symbol: OFO61387.1
gene_biotype: protein_coding
description:
  Na/Pi cotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02225
symbol: OFO61388.1
gene_biotype: protein_coding
description:
  Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02230
symbol: OFO61389.1
gene_biotype: protein_coding
description:
  DNA metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02245
symbol: OFO61392.1
gene_biotype: protein_coding
description:
  Phosphatidic acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02250
symbol: OFO61393.1
gene_biotype: protein_coding
description:
  LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF3023_02260
symbol: OFO61395.1
gene_biotype: protein_coding
description:
  Alginate O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: HMPREF3023_02270
symbol: nnrE
gene_biotype: protein_coding
description:
  NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.


ensembl_gene_id: HMPREF3023_02275
symbol: OFO61398.1
gene_biotype: protein_coding
description:
  MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02285
symbol: OFO61400.1
gene_biotype: protein_coding
description:
  ATP synthase F0 subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02290
symbol: OFO61401.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.


ensembl_gene_id: HMPREF3023_02295
symbol: OFO61402.1
gene_biotype: protein_coding
description:
  Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02300
symbol: OFO61403.1
gene_biotype: protein_coding
description:
  tRNA 2-thiocytidine biosynthesis protein TtcA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TtcA family.


ensembl_gene_id: HMPREF3023_02305
symbol: OFO61404.1
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: HMPREF3023_02320
symbol: OFO61407.1
gene_biotype: protein_coding
description:
  AI-2E family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02325
symbol: OFO61408.1
gene_biotype: protein_coding
description:
  Ferritin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02335
symbol: OFO61410.1
gene_biotype: protein_coding
description:
  Choline ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02340
symbol: OFO61411.1
gene_biotype: protein_coding
description:
  Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02345
symbol: OFO61412.1
gene_biotype: protein_coding
description:
  Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02350
symbol: OFO61413.1
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02355
symbol: OFO61414.1
gene_biotype: protein_coding
description:
  RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02365
symbol: OFO61416.1
gene_biotype: protein_coding
description:
  Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02390
symbol: OFO61421.1
gene_biotype: protein_coding
description:
  Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02395
symbol: OFO61424.1
gene_biotype: protein_coding
description:
  Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02415
symbol: OFO61348.1
gene_biotype: protein_coding
description:
  Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02425
symbol: OFO61350.1
gene_biotype: protein_coding
description:
  2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02430
symbol: OFO61351.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02435
symbol: OFO61352.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02440
symbol: OFO61353.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02445
symbol: OFO61354.1
gene_biotype: protein_coding
description:
  Murein hydrolase transporter LrgA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02455
symbol: OFO61287.1
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02470
symbol: OFO61290.1
gene_biotype: protein_coding
description:
  Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: HMPREF3023_02480
symbol: OFO61292.1
gene_biotype: protein_coding
description:
  Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02485
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: HMPREF3023_02490
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: HMPREF3023_02500
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: HMPREF3023_02505
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: HMPREF3023_02510
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: HMPREF3023_02515
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: HMPREF3023_02520
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: HMPREF3023_02525
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: HMPREF3023_02530
symbol: rpmC
gene_biotype: protein_coding
description:
  50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: HMPREF3023_02535
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: HMPREF3023_02540
symbol: rplN
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: HMPREF3023_02545
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: HMPREF3023_02550
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: HMPREF3023_02555
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: HMPREF3023_02560
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: HMPREF3023_02565
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: HMPREF3023_02570
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: HMPREF3023_02575
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: HMPREF3023_02580
symbol: rpmD
gene_biotype: protein_coding
description:
  50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02585
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: HMPREF3023_02590
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: HMPREF3023_02595
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: HMPREF3023_02600
symbol: OFO61316.1
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02605
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: HMPREF3023_02610
symbol: rpmJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L36; Smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02615
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: HMPREF3023_02620
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: HMPREF3023_02625
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: HMPREF3023_02630
symbol: rplQ
gene_biotype: protein_coding
description:
  50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02640
symbol: groS
gene_biotype: protein_coding
description:
  6-O-methylguanine DNA methyltransferase; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: HMPREF3023_02645
symbol: groEL
gene_biotype: protein_coding
description:
  Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: HMPREF3023_02655
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: HMPREF3023_02660
symbol: OFO61108.1
gene_biotype: protein_coding
description:
  Sodium-dependent tryptophan transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02665
symbol: OFO61109.1
gene_biotype: protein_coding
description:
  Class I fructose-bisphosphate aldolase; Catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02670
symbol: OFO61110.1
gene_biotype: protein_coding
description:
  RNase H; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02675
symbol: OFO61111.1
gene_biotype: protein_coding
description:
  CMP deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02700
symbol: mscL
gene_biotype: protein_coding
description:
  Mechanosensitive ion channel protein MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: HMPREF3023_02710
symbol: OFO61118.1
gene_biotype: protein_coding
description:
  Coenzyme A pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02725
symbol: OFO61121.1
gene_biotype: protein_coding
description:
  NrdH-redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02735
symbol: OFO61123.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02740
symbol: OFO61124.1
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02745
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: HMPREF3023_02750
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: HMPREF3023_02755
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: HMPREF3023_02775
symbol: OFO61131.1
gene_biotype: protein_coding
description:
  4-hydroxy-2-oxovalerate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02780
symbol: OFO61132.1
gene_biotype: protein_coding
description:
  3-phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: HMPREF3023_02785
symbol: OFO61133.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF3023_02810
symbol: OFO61138.1
gene_biotype: protein_coding
description:
  Tat pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02815
symbol: OFO61139.1
gene_biotype: protein_coding
description:
  Glycine cleavage system protein T; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.


ensembl_gene_id: HMPREF3023_02820
symbol: OFO61140.1
gene_biotype: protein_coding
description:
  Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: HMPREF3023_02825
symbol: OFO61141.1
gene_biotype: protein_coding
description:
  L-aspartate oxidase; Catalyzes the formation of oxaloacetate from L-aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02830
symbol: OFO61142.1
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide diphosphorylase (carboxylating); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NadC/ModD family.


ensembl_gene_id: HMPREF3023_02835
symbol: OFO61143.1
gene_biotype: protein_coding
description:
  DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02840
symbol: OFO61144.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02845
symbol: OFO61172.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: HMPREF3023_02850
symbol: OFO61145.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02855
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: HMPREF3023_02860
symbol: OFO61147.1
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: HMPREF3023_02870
symbol: OFO61149.1
gene_biotype: protein_coding
description:
  PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02880
symbol: OFO61151.1
gene_biotype: protein_coding
description:
  Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02890
symbol: OFO61153.1
gene_biotype: protein_coding
description:
  Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: HMPREF3023_02895
symbol: OFO61154.1
gene_biotype: protein_coding
description:
  Abortive infection protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02900
symbol: OFO61155.1
gene_biotype: protein_coding
description:
  NAD-dependent deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02910
symbol: hslO
gene_biotype: protein_coding
description:
  Molecular chaperone Hsp33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: HMPREF3023_02925
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.


ensembl_gene_id: HMPREF3023_02930
symbol: OFO61161.1
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02935
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: HMPREF3023_02940
symbol: OFO61163.1
gene_biotype: protein_coding
description:
  Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family.


ensembl_gene_id: HMPREF3023_02955
symbol: OFO61166.1
gene_biotype: protein_coding
description:
  5-methylcytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02980
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: HMPREF3023_02985
symbol: OFO61171.1
gene_biotype: protein_coding
description:
  Dipeptide epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_02995
symbol: HMPREF3023_02995
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3023_03000
symbol: OFO60912.1
gene_biotype: protein_coding
description:
  Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03005
symbol: OFO60913.1
gene_biotype: protein_coding
description:
  LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03010
symbol: OFO60914.1
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03020
symbol: OFO60916.1
gene_biotype: protein_coding
description:
  General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03030
symbol: OFO60917.1
gene_biotype: protein_coding
description:
  RNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: HMPREF3023_03035
symbol: nadK
gene_biotype: protein_coding
description:
  NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: HMPREF3023_03040
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: HMPREF3023_03045
symbol: OFO60920.1
gene_biotype: protein_coding
description:
  Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family.


ensembl_gene_id: HMPREF3023_03060
symbol: OFO60923.1
gene_biotype: protein_coding
description:
  Trehalose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0761 family.


ensembl_gene_id: HMPREF3023_03065
symbol: OFO60924.1
gene_biotype: protein_coding
description:
  Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03070
symbol: recD2
gene_biotype: protein_coding
description:
  Helicase RecD; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.


ensembl_gene_id: HMPREF3023_03080
symbol: OFO60927.1
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.


ensembl_gene_id: HMPREF3023_03085
symbol: rpsI
gene_biotype: protein_coding
description:
  30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: HMPREF3023_03090
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: HMPREF3023_03095
symbol: OFO60929.1
gene_biotype: protein_coding
description:
  Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03100
symbol: OFO60930.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03105
symbol: OFO60931.1
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03110
symbol: OFO60932.1
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03120
symbol: OFO60934.1
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: HMPREF3023_03140
symbol: tuf
gene_biotype: protein_coding
description:
  Dipeptide epimerase; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3023_03160
symbol: OFO60663.1
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.


ensembl_gene_id: HMPREF3023_03165
symbol: OFO60664.1
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03170
symbol: OFO60665.1
gene_biotype: protein_coding
description:
  Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03175
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: HMPREF3023_03180
symbol: OFO60667.1
gene_biotype: protein_coding
description:
  Sodium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03185
symbol: OFO60668.1
gene_biotype: protein_coding
description:
  5-nitroimidazole antibiotic resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03200
symbol: OFO60671.1
gene_biotype: protein_coding
description:
  2-polyprenylphenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03205
symbol: proB
gene_biotype: protein_coding
description:
  Gamma-glutamyl kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: HMPREF3023_03210
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: HMPREF3023_03215
symbol: OFO60726.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03225
symbol: OFO60675.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03230
symbol: OFO60676.1
gene_biotype: protein_coding
description:
  Conjugal transfer protein TraX; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03240
symbol: OFO60678.1
gene_biotype: protein_coding
description:
  Phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: HMPREF3023_03245
symbol: OFO60679.1
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03250
symbol: OFO60680.1
gene_biotype: protein_coding
description:
  Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03255
symbol: OFO60681.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03260
symbol: OFO60682.1
gene_biotype: protein_coding
description:
  Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03270
symbol: dinB
gene_biotype: protein_coding
description:
  DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: HMPREF3023_03280
symbol: OFO60686.1
gene_biotype: protein_coding
description:
  Formate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03285
symbol: OFO60687.1
gene_biotype: protein_coding
description:
  Na+/H+ antiporter NhaC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03290
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: HMPREF3023_03305
symbol: hutI
gene_biotype: protein_coding
description:
  Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03325
symbol: OFO60695.1
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03330
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: HMPREF3023_03335
symbol: uvrA
gene_biotype: protein_coding
description:
  ABC-ATPase UvrA; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: HMPREF3023_03345
symbol: OFO60727.1
gene_biotype: protein_coding
description:
  Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03370
symbol: hutH
gene_biotype: protein_coding
description:
  Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03375
symbol: OFO60704.1
gene_biotype: protein_coding
description:
  Glutamate formiminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03380
symbol: fhs
gene_biotype: protein_coding
description:
  Formate--tetrahydrofolate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the formate--tetrahydrofolate ligase family.


ensembl_gene_id: HMPREF3023_03385
symbol: OFO60706.1
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03390
symbol: OFO60707.1
gene_biotype: protein_coding
description:
  Glutamate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03410
symbol: OFO60711.1
gene_biotype: protein_coding
description:
  Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: HMPREF3023_03415
symbol: OFO60712.1
gene_biotype: protein_coding
description:
  Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03435
symbol: OFO60716.1
gene_biotype: protein_coding
description:
  NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03440
symbol: cysS
gene_biotype: protein_coding
description:
  cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3023_03445
symbol: mrnC
gene_biotype: protein_coding
description:
  Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.


ensembl_gene_id: HMPREF3023_03450
symbol: thyX
gene_biotype: protein_coding
description:
  FAD-dependent thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: HMPREF3023_03455
symbol: OFO60720.1
gene_biotype: protein_coding
description:
  23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: HMPREF3023_03460
symbol: OFO60721.1
gene_biotype: protein_coding
description:
  RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03465
symbol: OFO60722.1
gene_biotype: protein_coding
description:
  Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03470
symbol: OFO60723.1
gene_biotype: protein_coding
description:
  Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03480
symbol: OFO60725.1
gene_biotype: protein_coding
description:
  Ferrous iron transporter B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: HMPREF3023_03495
symbol: OFO60597.1
gene_biotype: protein_coding
description:
  Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03525
symbol: OFO60603.1
gene_biotype: protein_coding
description:
  FMN-binding domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03540
symbol: HMPREF3023_03540
gene_biotype: protein_coding
description:
  Transposase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03545
symbol: OFO60606.1
gene_biotype: protein_coding
description:
  ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03550
symbol: OFO60607.1
gene_biotype: protein_coding
description:
  ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.


ensembl_gene_id: HMPREF3023_03560
symbol: OFO60609.1
gene_biotype: protein_coding
description:
  ATP synthase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03565
symbol: OFO60610.1
gene_biotype: protein_coding
description:
  ATP synthase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03570
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: HMPREF3023_03575
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.


ensembl_gene_id: HMPREF3023_03585
symbol: OFO60614.1
gene_biotype: protein_coding
description:
  Antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03590
symbol: OFO60615.1
gene_biotype: protein_coding
description:
  GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03625
symbol: rrf
gene_biotype: protein_coding
description:
  23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch; Belongs to the glutathione peroxidase family.


ensembl_gene_id: HMPREF3023_03630
symbol: OFO60280.1
gene_biotype: protein_coding
description:
  Redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03635
symbol: OFO60281.1
gene_biotype: protein_coding
description:
  Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03650
symbol: OFO60284.1
gene_biotype: protein_coding
description:
  ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.


ensembl_gene_id: HMPREF3023_03655
symbol: OFO60285.1
gene_biotype: protein_coding
description:
  ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family.


ensembl_gene_id: HMPREF3023_03670
symbol: atpF
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: HMPREF3023_03685
symbol: atpD-2
gene_biotype: protein_coding
description:
  V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: HMPREF3023_03690
symbol: OFO60292.1
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03700
symbol: OFO60294.1
gene_biotype: protein_coding
description:
  LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03715
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.


ensembl_gene_id: HMPREF3023_03720
symbol: OFO60298.1
gene_biotype: protein_coding
description:
  Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03735
symbol: OFO60301.1
gene_biotype: protein_coding
description:
  Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03740
symbol: OFO60302.1
gene_biotype: protein_coding
description:
  Polysaccharide pyruvyl transferase CsaB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03750
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase 1; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: HMPREF3023_03755
symbol: OFO60304.1
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03760
symbol: purE
gene_biotype: protein_coding
description:
  N5-carboxyaminoimidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: HMPREF3023_03765
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03770
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: HMPREF3023_03775
symbol: purH
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03780
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; Catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family.


ensembl_gene_id: HMPREF3023_03795
symbol: OFO60312.1
gene_biotype: protein_coding
description:
  Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03820
symbol: OFO60317.1
gene_biotype: protein_coding
description:
  Antibiotic ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03825
symbol: OFO60318.1
gene_biotype: protein_coding
description:
  Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03835
symbol: OFO60320.1
gene_biotype: protein_coding
description:
  PTS sugar transporter subunit IID; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03850
symbol: HMPREF3023_03850
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03865
symbol: OFO60324.1
gene_biotype: protein_coding
description:
  DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03885
symbol: tmcAL
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.


ensembl_gene_id: HMPREF3023_03890
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: HMPREF3023_03900
symbol: rpmF
gene_biotype: protein_coding
description:
  50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: HMPREF3023_03910
symbol: OFO60333.1
gene_biotype: protein_coding
description:
  Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03930
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: HMPREF3023_03935
symbol: OFO60338.1
gene_biotype: protein_coding
description:
  acyl-ACP thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03940
symbol: OFO60339.1
gene_biotype: protein_coding
description:
  Foldase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03945
symbol: OFO60340.1
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03980
symbol: HMPREF3023_03980
gene_biotype: protein_coding
description:
  alanyl-tRNS synthetase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3023_03985
symbol: OFO60007.1
gene_biotype: protein_coding
description:
  Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_03990
symbol: OFO60008.1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04000
symbol: OFO60010.1
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: HMPREF3023_04005
symbol: lepA
gene_biotype: protein_coding
description:
  Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: HMPREF3023_04010
symbol: OFO60012.1
gene_biotype: protein_coding
description:
  Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.


ensembl_gene_id: HMPREF3023_04015
symbol: hrcA
gene_biotype: protein_coding
description:
  HrcA family transcriptional regulator; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: HMPREF3023_04020
symbol: grpE
gene_biotype: protein_coding
description:
  Nucleotide exchange factor GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds [...]


ensembl_gene_id: HMPREF3023_04030
symbol: dnaJ
gene_biotype: protein_coding
description:
  Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]


ensembl_gene_id: HMPREF3023_04035
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: HMPREF3023_04040
symbol: OFO60018.1
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: HMPREF3023_04045
symbol: OFO60019.1
gene_biotype: protein_coding
description:
  tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04055
symbol: OFO60021.1
gene_biotype: protein_coding
description:
  Histidine triad nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04060
symbol: OFO60022.1
gene_biotype: protein_coding
description:
  Patatin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04070
symbol: rpsU
gene_biotype: protein_coding
description:
  30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: HMPREF3023_04075
symbol: OFO60025.1
gene_biotype: protein_coding
description:
  aspartyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04085
symbol: OFO60027.1
gene_biotype: protein_coding
description:
  Nodulation protein NfeD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04100
symbol: OFO60184.1
gene_biotype: protein_coding
description:
  Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04105
symbol: ybeY
gene_biotype: protein_coding
description:
  rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: HMPREF3023_04115
symbol: OFO60032.1
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: HMPREF3023_04120
symbol: era
gene_biotype: protein_coding
description:
  GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: HMPREF3023_04130
symbol: glyQ
gene_biotype: protein_coding
description:
  glycine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04135
symbol: glyS
gene_biotype: protein_coding
description:
  glycine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04145
symbol: OFO60038.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase regulatory protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: HMPREF3023_04150
symbol: OFO60039.1
gene_biotype: protein_coding
description:
  Deoxyguanosinetriphosphate triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: HMPREF3023_04155
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: HMPREF3023_04160
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: HMPREF3023_04170
symbol: OFO60043.1
gene_biotype: protein_coding
description:
  Nif3-like dinuclear metal center hexameric protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04190
symbol: OFO60046.1
gene_biotype: protein_coding
description:
  Alkaline-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04205
symbol: OFO60049.1
gene_biotype: protein_coding
description:
  Sodium:dicarboxylate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: HMPREF3023_04210
symbol: OFO60050.1
gene_biotype: protein_coding
description:
  Sodium:glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.


ensembl_gene_id: HMPREF3023_04245
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: HMPREF3023_04250
symbol: OFO60058.1
gene_biotype: protein_coding
description:
  Bacteriocin leader domain-containing protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: HMPREF3023_04255
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: HMPREF3023_04260
symbol: ftsH
gene_biotype: protein_coding
description:
  Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: HMPREF3023_04270
symbol: OFO60185.1
gene_biotype: protein_coding
description:
  Transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.


ensembl_gene_id: HMPREF3023_04275
symbol: OFO60062.1
gene_biotype: protein_coding
description:
  Zinc-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: HMPREF3023_04285
symbol: OFO60064.1
gene_biotype: protein_coding
description:
  Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04290
symbol: OFO60065.1
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: HMPREF3023_04295
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: HMPREF3023_04300
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: HMPREF3023_04305
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: HMPREF3023_04310
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: HMPREF3023_04315
symbol: OFO60069.1
gene_biotype: protein_coding
description:
  Aminodeoxychorismate synthase components I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04320
symbol: OFO60186.1
gene_biotype: protein_coding
description:
  3-deoxy-7-phosphoheptulonate synthase; Catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04325
symbol: OFO60070.1
gene_biotype: protein_coding
description:
  Aminotransferase class IV; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04330
symbol: OFO60071.1
gene_biotype: protein_coding
description:
  aminoacyl-tRNA deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: HMPREF3023_04335
symbol: OFO60072.1
gene_biotype: protein_coding
description:
  Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04340
symbol: OFO60073.1
gene_biotype: protein_coding
description:
  Tagatose-6-phosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04350
symbol: OFO60075.1
gene_biotype: protein_coding
description:
  Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04365
symbol: OFO60078.1
gene_biotype: protein_coding
description:
  Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04370
symbol: OFO60079.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: HMPREF3023_04385
symbol: OFO60082.1
gene_biotype: protein_coding
description:
  Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04390
symbol: OFO60083.1
gene_biotype: protein_coding
description:
  S-layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04400
symbol: OFO60085.1
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyladenosine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04405
symbol: OFO60086.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04410
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase (NAD(+)) LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: HMPREF3023_04415
symbol: gatC
gene_biotype: protein_coding
description:
  Glutamyl amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: HMPREF3023_04420
symbol: gatA
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: HMPREF3023_04425
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: HMPREF3023_04440
symbol: der
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: HMPREF3023_04445
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: HMPREF3023_04450
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; Catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF3023_04460
symbol: OFO60097.1
gene_biotype: protein_coding
description:
  YggS family pyridoxal phosphate enzyme; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: HMPREF3023_04465
symbol: sepF
gene_biotype: protein_coding
description:
  Cell division protein SepF; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: HMPREF3023_04475
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: HMPREF3023_04480
symbol: OFO60101.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: HMPREF3023_04485
symbol: OFO60102.1
gene_biotype: protein_coding
description:
  FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04490
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: HMPREF3023_04495
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: HMPREF3023_04500
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: HMPREF3023_04505
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: HMPREF3023_04515
symbol: OFO60108.1
gene_biotype: protein_coding
description:
  Cytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04520
symbol: lexA
gene_biotype: protein_coding
description:
  Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: HMPREF3023_04525
symbol: OFO60110.1
gene_biotype: protein_coding
description:
  Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04535
symbol: OFO60112.1
gene_biotype: protein_coding
description:
  Recombinase XerC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.


ensembl_gene_id: HMPREF3023_04550
symbol: OFO60115.1
gene_biotype: protein_coding
description:
  TrpR-like protein YerC/YecD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04565
symbol: OFO60118.1
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04570
symbol: OFO60119.1
gene_biotype: protein_coding
description:
  Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04575
symbol: recA
gene_biotype: protein_coding
description:
  DNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: HMPREF3023_04580
symbol: cinA
gene_biotype: protein_coding
description:
  Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.


ensembl_gene_id: HMPREF3023_04585
symbol: OFO60122.1
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: HMPREF3023_04590
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: HMPREF3023_04595
symbol: OFO60124.1
gene_biotype: protein_coding
description:
  Stage III sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04600
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: HMPREF3023_04605
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: HMPREF3023_04610
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: HMPREF3023_04615
symbol: OFO60128.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.


ensembl_gene_id: HMPREF3023_04620
symbol: truB
gene_biotype: protein_coding
description:
  Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: HMPREF3023_04625
symbol: OFO60129.1
gene_biotype: protein_coding
description:
  Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04630
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: HMPREF3023_04635
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: HMPREF3023_04640
symbol: OFO60132.1
gene_biotype: protein_coding
description:
  Nucleic acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04645
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: HMPREF3023_04650
symbol: rimP
gene_biotype: protein_coding
description:
  Ribosome maturation factor; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: HMPREF3023_04655
symbol: polC
gene_biotype: protein_coding
description:
  PolC-type DNA polymerase III; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: HMPREF3023_04660
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: HMPREF3023_04665
symbol: OFO60135.1
gene_biotype: protein_coding
description:
  RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04670
symbol: OFO60136.1
gene_biotype: protein_coding
description:
  Phosphatidate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDS family.


ensembl_gene_id: HMPREF3023_04675
symbol: OFO60137.1
gene_biotype: protein_coding
description:
  Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: HMPREF3023_04680
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: HMPREF3023_04690
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: HMPREF3023_04695
symbol: rpsB
gene_biotype: protein_coding
description:
  30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: HMPREF3023_04700
symbol: OFO60142.1
gene_biotype: protein_coding
description:
  Rubrerythrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04705
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: HMPREF3023_04710
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: HMPREF3023_04720
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: HMPREF3023_04725
symbol: OFO60147.1
gene_biotype: protein_coding
description:
  Fructose 1,6-bisphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04730
symbol: tal
gene_biotype: protein_coding
description:
  Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: HMPREF3023_04735
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: HMPREF3023_04740
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: HMPREF3023_04745
symbol: OFO60150.1
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04750
symbol: OFO60151.1
gene_biotype: protein_coding
description:
  Cell cycle protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.


ensembl_gene_id: HMPREF3023_04755
symbol: OFO60152.1
gene_biotype: protein_coding
description:
  FHA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04775
symbol: OFO60156.1
gene_biotype: protein_coding
description:
  Single-stranded DNA endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04780
symbol: rsmI
gene_biotype: protein_coding
description:
  rRNA (cytidine-2'-O-)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: HMPREF3023_04790
symbol: OFO60159.1
gene_biotype: protein_coding
description:
  Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04795
symbol: queH
gene_biotype: protein_coding
description:
  Recombinase; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).


ensembl_gene_id: HMPREF3023_04800
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: HMPREF3023_04805
symbol: deoC
gene_biotype: protein_coding
description:
  2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: HMPREF3023_04840
symbol: OFO60169.1
gene_biotype: protein_coding
description:
  O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04855
symbol: OFO60172.1
gene_biotype: protein_coding
description:
  DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04865
symbol: OFO60174.1
gene_biotype: protein_coding
description:
  ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04890
symbol: OFO60179.1
gene_biotype: protein_coding
description:
  Oleate hydratase; In group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04900
symbol: OFO60181.1
gene_biotype: protein_coding
description:
  Potassium channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04915
symbol: HMPREF3023_04915
gene_biotype: protein_coding
description:
  Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04920
symbol: OFO60183.1
gene_biotype: protein_coding
description:
  Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04955
symbol: OFO59685.1
gene_biotype: protein_coding
description:
  Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: HMPREF3023_04965
symbol: OFO59687.1
gene_biotype: protein_coding
description:
  Nicotinamide mononucleotide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04985
symbol: OFO59691.1
gene_biotype: protein_coding
description:
  Butanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04990
symbol: OFO59692.1
gene_biotype: protein_coding
description:
  Superoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_04995
symbol: OFO59693.1
gene_biotype: protein_coding
description:
  RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05020
symbol: OFO59697.1
gene_biotype: protein_coding
description:
  Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05040
symbol: OFO59701.1
gene_biotype: protein_coding
description:
  Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05050
symbol: OFO59703.1
gene_biotype: protein_coding
description:
  ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05060
symbol: OFO59705.1
gene_biotype: protein_coding
description:
  Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05070
symbol: OFO59707.1
gene_biotype: protein_coding
description:
  Tetracycline resistance ribosomal protection protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05090
symbol: OFO59711.1
gene_biotype: protein_coding
description:
  Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05095
symbol: OFO59712.1
gene_biotype: protein_coding
description:
  Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.


ensembl_gene_id: HMPREF3023_05110
symbol: OFO59715.1
gene_biotype: protein_coding
description:
  Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05130
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: HMPREF3023_05140
symbol: HMPREF3023_05140
gene_biotype: protein_coding
description:
  Peptidase; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05150
symbol: OFO59507.1
gene_biotype: protein_coding
description:
  Peptidase C26; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05155
symbol: OFO59508.1
gene_biotype: protein_coding
description:
  Multidrug transporter MATE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05160
symbol: OFO59509.1
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05165
symbol: tadA
gene_biotype: protein_coding
description:
  tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: HMPREF3023_05175
symbol: OFO59512.1
gene_biotype: protein_coding
description:
  Internalin protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05220
symbol: OFO59521.1
gene_biotype: protein_coding
description:
  CsoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05225
symbol: OFO59522.1
gene_biotype: protein_coding
description:
  Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05235
symbol: OFO59524.1
gene_biotype: protein_coding
description:
  ScdA protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.


ensembl_gene_id: HMPREF3023_05240
symbol: OFO59525.1
gene_biotype: protein_coding
description:
  Threonine aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05250
symbol: OFO59527.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein GumN; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05255
symbol: OFO59528.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0597 family.


ensembl_gene_id: HMPREF3023_05280
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.


ensembl_gene_id: HMPREF3023_05290
symbol: OFO59535.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.


ensembl_gene_id: HMPREF3023_05295
symbol: OFO59536.1
gene_biotype: protein_coding
description:
  Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05300
symbol: OFO59537.1
gene_biotype: protein_coding
description:
  Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: HMPREF3023_05305
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: HMPREF3023_05310
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: HMPREF3023_05315
symbol: recF
gene_biotype: protein_coding
description:
  DNA recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.


ensembl_gene_id: HMPREF3023_05325
symbol: OFO59542.1
gene_biotype: protein_coding
description:
  DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of  [...]


ensembl_gene_id: HMPREF3023_05330
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiation protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: HMPREF3023_05335
symbol: rpmH
gene_biotype: protein_coding
description:
  50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: HMPREF3023_05340
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: HMPREF3023_05345
symbol: OFO59546.1
gene_biotype: protein_coding
description:
  Membrane protein insertion efficiency factor YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: HMPREF3023_05355
symbol: OFO59548.1
gene_biotype: protein_coding
description:
  SpoIIIJ-associated protein Jag; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05360
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: HMPREF3023_05365
symbol: mnmG
gene_biotype: protein_coding
description:
  tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: HMPREF3023_05370
symbol: rsmG
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: HMPREF3023_05375
symbol: OFO59552.1
gene_biotype: protein_coding
description:
  Sporulation initiation inhibitor Soj; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05380
symbol: OFO59553.1
gene_biotype: protein_coding
description:
  Stage 0 sporulation protein J; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.


ensembl_gene_id: HMPREF3023_05385
symbol: OFO59554.1
gene_biotype: protein_coding
description:
  Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05410
symbol: OFO59558.1
gene_biotype: protein_coding
description:
  D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.


ensembl_gene_id: HMPREF3023_05415
symbol: folE
gene_biotype: protein_coding
description:
  Type I GTP cyclohydrolase I FolE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05425
symbol: OFO59561.1
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: HMPREF3023_05430
symbol: OFO59562.1
gene_biotype: protein_coding
description:
  Glucosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05460
symbol: OFO59568.1
gene_biotype: protein_coding
description:
  Response regulator SirA; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: HMPREF3023_05465
symbol: OFO59569.1
gene_biotype: protein_coding
description:
  Ribonucleotide-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: HMPREF3023_05475
symbol: OFO59571.1
gene_biotype: protein_coding
description:
  Glutathione-dependent reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05480
symbol: OFO59572.1
gene_biotype: protein_coding
description:
  Dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05485
symbol: OFO59573.1
gene_biotype: protein_coding
description:
  Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05495
symbol: OFO59575.1
gene_biotype: protein_coding
description:
  Zinc ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: HMPREF3023_05500
symbol: OFO59576.1
gene_biotype: protein_coding
description:
  Zinc-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05505
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: HMPREF3023_05510
symbol: glsA
gene_biotype: protein_coding
description:
  Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.


ensembl_gene_id: HMPREF3023_05515
symbol: OFO59579.1
gene_biotype: protein_coding
description:
  Amino acid carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05545
symbol: surE
gene_biotype: protein_coding
description:
  5'-3' exonuclease; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: HMPREF3023_05550
symbol: OFO59585.1
gene_biotype: protein_coding
description:
  Metallohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05580
symbol: OFO59590.1
gene_biotype: protein_coding
description:
  GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05585
symbol: OFO59591.1
gene_biotype: protein_coding
description:
  Primosomal replication protein N; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05590
symbol: OFO59592.1
gene_biotype: protein_coding
description:
  DNA replication protein DnaC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05595
symbol: OFO59593.1
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05605
symbol: OFO59595.1
gene_biotype: protein_coding
description:
  K+/H+ antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05615
symbol: OFO59597.1
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05645
symbol: plsX
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: HMPREF3023_05655
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: HMPREF3023_05665
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: HMPREF3023_05680
symbol: HMPREF3023_05680
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.


ensembl_gene_id: HMPREF3023_05685
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: HMPREF3023_05690
symbol: rpsP
gene_biotype: protein_coding
description:
  30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: HMPREF3023_05695
symbol: OFO59216.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0109 family.


ensembl_gene_id: HMPREF3023_05700
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: HMPREF3023_05705
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine(37)-N(1))-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: HMPREF3023_05710
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: HMPREF3023_05715
symbol: OFO59220.1
gene_biotype: protein_coding
description:
  Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05725
symbol: asnA
gene_biotype: protein_coding
description:
  Aspartate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05735
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: HMPREF3023_05740
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: HMPREF3023_05745
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: HMPREF3023_05750
symbol: OFO59303.1
gene_biotype: protein_coding
description:
  Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05755
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: HMPREF3023_05760
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine(34) transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form [...]


ensembl_gene_id: HMPREF3023_05765
symbol: OFO59229.1
gene_biotype: protein_coding
description:
  Preprotein translocase subunit YajC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05770
symbol: OFO59230.1
gene_biotype: protein_coding
description:
  Fe-S protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05775
symbol: OFO59231.1
gene_biotype: protein_coding
description:
  SCIFF radical SAM maturase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05780
symbol: OFO59232.1
gene_biotype: protein_coding
description:
  single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05785
symbol: OFO59233.1
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: HMPREF3023_05790
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: HMPREF3023_05795
symbol: OFO59235.1
gene_biotype: protein_coding
description:
  MBL fold hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05800
symbol: OFO59236.1
gene_biotype: protein_coding
description:
  Coproporphyrinogen dehydrogenase HemZ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05805
symbol: OFO59237.1
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05810
symbol: aspS
gene_biotype: protein_coding
description:
  aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: HMPREF3023_05815
symbol: OFO59239.1
gene_biotype: protein_coding
description:
  Polyunsaturated fatty acid synthase PfaC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05830
symbol: OFO59242.1
gene_biotype: protein_coding
description:
  Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05845
symbol: mraZ
gene_biotype: protein_coding
description:
  Division/cell wall cluster transcriptional repressor MraZ; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MraZ family.


ensembl_gene_id: HMPREF3023_05850
symbol: rsmH
gene_biotype: protein_coding
description:
  16S rRNA (cytosine(1402)-N(4))-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: HMPREF3023_05855
symbol: OFO59247.1
gene_biotype: protein_coding
description:
  Cell division protein FtsL; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05865
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: HMPREF3023_05870
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: HMPREF3023_05875
symbol: OFO59251.1
gene_biotype: protein_coding
description:
  Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.


ensembl_gene_id: HMPREF3023_05880
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: HMPREF3023_05890
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: HMPREF3023_05900
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: HMPREF3023_05905
symbol: OFO59257.1
gene_biotype: protein_coding
description:
  AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05910
symbol: asnS
gene_biotype: protein_coding
description:
  asparagine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05915
symbol: leuS
gene_biotype: protein_coding
description:
  leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3023_05920
symbol: OFO59260.1
gene_biotype: protein_coding
description:
  YicC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05930
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: HMPREF3023_05935
symbol: OFO59263.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: HMPREF3023_05940
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: HMPREF3023_05945
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: HMPREF3023_05950
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: HMPREF3023_05955
symbol: OFO59267.1
gene_biotype: protein_coding
description:
  Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05960
symbol: OFO59268.1
gene_biotype: protein_coding
description:
  16S rRNA (cytosine(967)-C(5))-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.


ensembl_gene_id: HMPREF3023_05965
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: HMPREF3023_05970
symbol: OFO59270.1
gene_biotype: protein_coding
description:
  Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05975
symbol: OFO59271.1
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05980
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: HMPREF3023_05985
symbol: OFO59273.1
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: HMPREF3023_05990
symbol: OFO59274.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_05995
symbol: OFO59275.1
gene_biotype: protein_coding
description:
  Carboxylate--amine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06010
symbol: map
gene_biotype: protein_coding
description:
  Type I methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: HMPREF3023_06020
symbol: OFO59280.1
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: HMPREF3023_06025
symbol: OFO59281.1
gene_biotype: protein_coding
description:
  Thymidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06030
symbol: OFO59282.1
gene_biotype: protein_coding
description:
  Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06035
symbol: psuG
gene_biotype: protein_coding
description:
  Pseudouridine-5-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.


ensembl_gene_id: HMPREF3023_06040
symbol: OFO59304.1
gene_biotype: protein_coding
description:
  acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06050
symbol: OFO59285.1
gene_biotype: protein_coding
description:
  Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.


ensembl_gene_id: HMPREF3023_06055
symbol: OFO59286.1
gene_biotype: protein_coding
description:
  Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06075
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: HMPREF3023_06080
symbol: OFO59291.1
gene_biotype: protein_coding
description:
  Vancomycin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06095
symbol: OFO59294.1
gene_biotype: protein_coding
description:
  RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CvfB family.


ensembl_gene_id: HMPREF3023_06100
symbol: OFO59295.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: HMPREF3023_06105
symbol: OFO59296.1
gene_biotype: protein_coding
description:
  Replication initiator protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06110
symbol: OFO59297.1
gene_biotype: protein_coding
description:
  Nucleoside triphosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06120
symbol: OFO59299.1
gene_biotype: protein_coding
description:
  Antirepressor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06125
symbol: OFO59300.1
gene_biotype: protein_coding
description:
  Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06130
symbol: OFO59301.1
gene_biotype: protein_coding
description:
  Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06150
symbol: OFO63365.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: HMPREF3023_06175
symbol: OFO63174.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06190
symbol: ispE
gene_biotype: protein_coding
description:
  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: HMPREF3023_06210
symbol: birA
gene_biotype: protein_coding
description:
  Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.


ensembl_gene_id: HMPREF3023_06215
symbol: OFO63180.1
gene_biotype: protein_coding
description:
  Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06220
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: HMPREF3023_06240
symbol: OFO63185.1
gene_biotype: protein_coding
description:
  Stage 0 sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06255
symbol: OFO63188.1
gene_biotype: protein_coding
description:
  MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06260
symbol: OFO63189.1
gene_biotype: protein_coding
description:
  Biotin biosynthesis protein BioY; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06265
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: HMPREF3023_06270
symbol: OFO63191.1
gene_biotype: protein_coding
description:
  Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: HMPREF3023_06280
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: HMPREF3023_06285
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: HMPREF3023_06290
symbol: OFO63195.1
gene_biotype: protein_coding
description:
  Protein veg; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06295
symbol: OFO63196.1
gene_biotype: protein_coding
description:
  F420-0--gamma-glutamyl ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06300
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: HMPREF3023_06305
symbol: OFO63198.1
gene_biotype: protein_coding
description:
  Cell division protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: HMPREF3023_06310
symbol: OFO63199.1
gene_biotype: protein_coding
description:
  Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06315
symbol: OFO63200.1
gene_biotype: protein_coding
description:
  Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family.


ensembl_gene_id: HMPREF3023_06330
symbol: OFO63156.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: HMPREF3023_06335
symbol: fni
gene_biotype: protein_coding
description:
  Type 2 isopentenyl-diphosphate Delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).


ensembl_gene_id: HMPREF3023_06350
symbol: OFO63160.1
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06370
symbol: OFO63164.1
gene_biotype: protein_coding
description:
  DNA-entry nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06375
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanosine(46)-N7)-methyltransferase TrmB; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: HMPREF3023_06380
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase BioB; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: HMPREF3023_06400
symbol: OFO63021.1
gene_biotype: protein_coding
description:
  Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06440
symbol: HMPREF3023_06440
gene_biotype: protein_coding
description:
  Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06465
symbol: HMPREF3023_06465
gene_biotype: protein_coding
description:
  Phage tail protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06470
symbol: OFO63030.1
gene_biotype: protein_coding
description:
  Head-tail adaptor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06495
symbol: HMPREF3023_06495
gene_biotype: protein_coding
description:
  Portal protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06520
symbol: HMPREF3023_06520
gene_biotype: protein_coding
description:
  Conjugal transfer protein TraG; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06535
symbol: HMPREF3023_06535
gene_biotype: protein_coding
description:
  Replication initiation protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06555
symbol: HMPREF3023_06555
gene_biotype: protein_coding
description:
  MBL fold metallo-hydrolase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06570
symbol: HMPREF3023_06570
gene_biotype: protein_coding
description:
  Transposase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.


ensembl_gene_id: HMPREF3023_06580
symbol: HMPREF3023_06580
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06615
symbol: OFO63051.1
gene_biotype: protein_coding
description:
  Serine recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06620
symbol: OFO63052.1
gene_biotype: protein_coding
description:
  Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06625
symbol: OFO63053.1
gene_biotype: protein_coding
description:
  Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06650
symbol: HMPREF3023_06650
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the inositol monophosphatase superfamily.


ensembl_gene_id: HMPREF3023_06655
symbol: OFO62816.1
gene_biotype: protein_coding
description:
  Peptidase M16C family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06665
symbol: tsaD
gene_biotype: protein_coding
description:
  N(6)-L-threonylcarbamoyladenine synthase TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: HMPREF3023_06670
symbol: OFO62819.1
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine N-acetyltransferase RimI; Acetylates the N-terminal alanine of ribosomal protein S18.


ensembl_gene_id: HMPREF3023_06675
symbol: OFO62820.1
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyladenosine biosynthesis protein TsaB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06680
symbol: OFO62821.1
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06700
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: HMPREF3023_06705
symbol: OFO62826.1
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.


ensembl_gene_id: HMPREF3023_06710
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06720
symbol: OFO62829.1
gene_biotype: protein_coding
description:
  rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06725
symbol: OFO62830.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: HMPREF3023_06730
symbol: OFO62831.1
gene_biotype: protein_coding
description:
  SMC-Scp complex subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: HMPREF3023_06735
symbol: scpA
gene_biotype: protein_coding
description:
  Chromosome segregation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: HMPREF3023_06745
symbol: deoA
gene_biotype: protein_coding
description:
  Pyrimidine-nucleoside phosphorylase; Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06750
symbol: OFO62835.1
gene_biotype: protein_coding
description:
  Purine-nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: HMPREF3023_06755
symbol: OFO62836.1
gene_biotype: protein_coding
description:
  ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.


ensembl_gene_id: HMPREF3023_06770
symbol: OFO62839.1
gene_biotype: protein_coding
description:
  Geranyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: HMPREF3023_06775
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: HMPREF3023_06780
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: HMPREF3023_06785
symbol: nusB
gene_biotype: protein_coding
description:
  N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: HMPREF3023_06795
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine(38,39,40) synthase TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: HMPREF3023_06800
symbol: ecfT
gene_biotype: protein_coding
description:
  Transporter; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.


ensembl_gene_id: HMPREF3023_06805
symbol: cbiO
gene_biotype: protein_coding
description:
  Energy-coupling factor transporter ATPase; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.


ensembl_gene_id: HMPREF3023_06815
symbol: OFO62937.1
gene_biotype: protein_coding
description:
  3-methyladenine DNA glycosylase; Responsible for recognizing base lesions in the genome and initiating base excision DNA repair; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: HMPREF3023_06825
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: HMPREF3023_06830
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: HMPREF3023_06835
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: HMPREF3023_06845
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: HMPREF3023_06850
symbol: OFO62853.1
gene_biotype: protein_coding
description:
  16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06855
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: HMPREF3023_06860
symbol: OFO62855.1
gene_biotype: protein_coding
description:
  Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06870
symbol: rpmB
gene_biotype: protein_coding
description:
  50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: HMPREF3023_06875
symbol: OFO62858.1
gene_biotype: protein_coding
description:
  Bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: HMPREF3023_06880
symbol: OFO62859.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid transporter; Component of the transport system for branched-chain amino acids.


ensembl_gene_id: HMPREF3023_06885
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: HMPREF3023_06890
symbol: OFO62861.1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family.


ensembl_gene_id: HMPREF3023_06895
symbol: OFO62862.1
gene_biotype: protein_coding
description:
  ATP--guanido phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06900
symbol: OFO62863.1
gene_biotype: protein_coding
description:
  DNA helicase UvrB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06905
symbol: OFO62864.1
gene_biotype: protein_coding
description:
  CtsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CtsR family.


ensembl_gene_id: HMPREF3023_06915
symbol: fusA-2
gene_biotype: protein_coding
description:
  Elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06920
symbol: OFO62867.1
gene_biotype: protein_coding
description:
  Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06925
symbol: OFO62868.1
gene_biotype: protein_coding
description:
  Cytochrome C biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06945
symbol: guaB
gene_biotype: protein_coding
description:
  IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: HMPREF3023_06955
symbol: dacA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.


ensembl_gene_id: HMPREF3023_06965
symbol: OFO62876.1
gene_biotype: protein_coding
description:
  Alkylphosphonate utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06975
symbol: xpt
gene_biotype: protein_coding
description:
  Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.


ensembl_gene_id: HMPREF3023_06980
symbol: OFO62879.1
gene_biotype: protein_coding
description:
  Tellurium resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TelA family.


ensembl_gene_id: HMPREF3023_06990
symbol: OFO62881.1
gene_biotype: protein_coding
description:
  Fatty acid-binding protein DegV; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_06995
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: HMPREF3023_07000
symbol: OFO62883.1
gene_biotype: protein_coding
description:
  tRNA adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07020
symbol: OFO62886.1
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: HMPREF3023_07050
symbol: OFO62889.1
gene_biotype: protein_coding
description:
  Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07055
symbol: sfsA
gene_biotype: protein_coding
description:
  Sugar fermentation stimulation protein SfsA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SfsA family.


ensembl_gene_id: HMPREF3023_07060
symbol: OFO62891.1
gene_biotype: protein_coding
description:
  Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07075
symbol: OFO62894.1
gene_biotype: protein_coding
description:
  DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07125
symbol: rnfB
gene_biotype: protein_coding
description:
  Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: HMPREF3023_07130
symbol: rnfA
gene_biotype: protein_coding
description:
  Electron transport complex subunit A; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: HMPREF3023_07135
symbol: rnfE
gene_biotype: protein_coding
description:
  Electron transport complex subunit RsxE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: HMPREF3023_07140
symbol: OFO62907.1
gene_biotype: protein_coding
description:
  Electron transporter RnfG; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07145
symbol: rnfD
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.


ensembl_gene_id: HMPREF3023_07150
symbol: rnfC
gene_biotype: protein_coding
description:
  Electron transporter RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.


ensembl_gene_id: HMPREF3023_07160
symbol: OFO62911.1
gene_biotype: protein_coding
description:
  Class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07165
symbol: OFO62912.1
gene_biotype: protein_coding
description:
  poly(R)-hydroxyalkanoic acid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07175
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: HMPREF3023_07190
symbol: murJ
gene_biotype: protein_coding
description:
  Murein biosynthesis protein MurJ; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: HMPREF3023_07235
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: HMPREF3023_07240
symbol: gpmI
gene_biotype: protein_coding
description:
  2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: HMPREF3023_07245
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: HMPREF3023_07250
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: HMPREF3023_07255
symbol: OFO62929.1
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07280
symbol: OFO62934.1
gene_biotype: protein_coding
description:
  Damage-inducible protein J; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07300
symbol: lysS
gene_biotype: protein_coding
description:
  lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3023_07305
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: HMPREF3023_07315
symbol: OFO62763.1
gene_biotype: protein_coding
description:
  tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: HMPREF3023_07320
symbol: coaX
gene_biotype: protein_coding
description:
  Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: HMPREF3023_07325
symbol: OFO62693.1
gene_biotype: protein_coding
description:
  BioY family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07330
symbol: OFO62694.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07335
symbol: ftsH-3
gene_biotype: protein_coding
description:
  Zinc metalloprotease; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: HMPREF3023_07345
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: HMPREF3023_07350
symbol: OFO62698.1
gene_biotype: protein_coding
description:
  RNA-binding protein S1; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07355
symbol: OFO62699.1
gene_biotype: protein_coding
description:
  Cell division protein FtsB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07365
symbol: OFO62701.1
gene_biotype: protein_coding
description:
  DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: HMPREF3023_07370
symbol: OFO62702.1
gene_biotype: protein_coding
description:
  Tetrapyrrole methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07380
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: HMPREF3023_07395
symbol: OFO62707.1
gene_biotype: protein_coding
description:
  Disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07405
symbol: OFO62709.1
gene_biotype: protein_coding
description:
  Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07415
symbol: gltX
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: HMPREF3023_07425
symbol: OFO62713.1
gene_biotype: protein_coding
description:
  Guanine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07485
symbol: OFO62725.1
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07500
symbol: OFO62728.1
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07505
symbol: OFO62729.1
gene_biotype: protein_coding
description:
  Serine/threonine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07520
symbol: OFO62732.1
gene_biotype: protein_coding
description:
  Glutamate:sodium symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07525
symbol: glsA-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glutaminase family.


ensembl_gene_id: HMPREF3023_07545
symbol: OFO62736.1
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07550
symbol: OFO62737.1
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07555
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: HMPREF3023_07560
symbol: OFO62739.1
gene_biotype: protein_coding
description:
  Guanylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07565
symbol: OFO62740.1
gene_biotype: protein_coding
description:
  Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: HMPREF3023_07570
symbol: OFO62765.1
gene_biotype: protein_coding
description:
  Riboflavin synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07575
symbol: ribBA
gene_biotype: protein_coding
description:
  Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: HMPREF3023_07580
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: HMPREF3023_07590
symbol: OFO62766.1
gene_biotype: protein_coding
description:
  Pyrroloquinoline quinone biosynthesis protein PqqE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07595
symbol: OFO62744.1
gene_biotype: protein_coding
description:
  3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07600
symbol: OFO62745.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: HMPREF3023_07605
symbol: OFO62746.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: HMPREF3023_07610
symbol: OFO62747.1
gene_biotype: protein_coding
description:
  UDP-N-acetyl glucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: HMPREF3023_07615
symbol: OFO62748.1
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07620
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: HMPREF3023_07625
symbol: OFO62750.1
gene_biotype: protein_coding
description:
  Ribose-5-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07630
symbol: OFO62751.1
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyladenosine biosynthesis protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: HMPREF3023_07635
symbol: OFO62752.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M20A family.


ensembl_gene_id: HMPREF3023_07640
symbol: OFO62753.1
gene_biotype: protein_coding
description:
  Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07655
symbol: OFO62756.1
gene_biotype: protein_coding
description:
  Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: HMPREF3023_07665
symbol: OFO62758.1
gene_biotype: protein_coding
description:
  Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07670
symbol: metN
gene_biotype: protein_coding
description:
  Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: HMPREF3023_07685
symbol: OFO62767.1
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07795
symbol: OFO62591.1
gene_biotype: protein_coding
description:
  Peptidase S58; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07810
symbol: mtaD
gene_biotype: protein_coding
description:
  N-ethylammeline chlorohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.


ensembl_gene_id: HMPREF3023_07820
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF3023_07830
symbol: valS
gene_biotype: protein_coding
description:
  valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: HMPREF3023_07835
symbol: OFO62598.1
gene_biotype: protein_coding
description:
  FolC bifunctional protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: HMPREF3023_07860
symbol: OFO62603.1
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH/MDH superfamily.


ensembl_gene_id: HMPREF3023_07880
symbol: OFO62559.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.


ensembl_gene_id: HMPREF3023_07900
symbol: HMPREF3023_07900
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: HMPREF3023_07930
symbol: OFO62467.1
gene_biotype: protein_coding
description:
  Proline dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_07990
symbol: OFO62214.1
gene_biotype: protein_coding
description:
  5-formyltetrahydrofolate cyclo-ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: HMPREF3023_08005
symbol: OFO62216.1
gene_biotype: protein_coding
description:
  Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: HMPREF3023_08010
symbol: OFO62217.1
gene_biotype: protein_coding
description:
  Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08020
symbol: OFO62218.1
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08045
symbol: OFO62222.1
gene_biotype: protein_coding
description:
  tRNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: HMPREF3023_08055
symbol: rpmG
gene_biotype: protein_coding
description:
  50S ribosomal protein L33; In Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08060
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: HMPREF3023_08065
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: HMPREF3023_08070
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: HMPREF3023_08075
symbol: rplA
gene_biotype: protein_coding
description:
  50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: HMPREF3023_08090
symbol: OFO62231.1
gene_biotype: protein_coding
description:
  Energy-coupled thiamine transporter ThiT; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08095
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: HMPREF3023_08100
symbol: rplL
gene_biotype: protein_coding
description:
  50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: HMPREF3023_08105
symbol: nfo
gene_biotype: protein_coding
description:
  Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.


ensembl_gene_id: HMPREF3023_08110
symbol: OFO62235.1
gene_biotype: protein_coding
description:
  Serine O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08115
symbol: OFO62236.1
gene_biotype: protein_coding
description:
  Cysteine synthase A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: HMPREF3023_08125
symbol: glmU
gene_biotype: protein_coding
description:
  Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: HMPREF3023_08130
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: HMPREF3023_08135
symbol: pth
gene_biotype: protein_coding
description:
  aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: HMPREF3023_08140
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: HMPREF3023_08155
symbol: OFO62244.1
gene_biotype: protein_coding
description:
  PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08160
symbol: dnaE
gene_biotype: protein_coding
description:
  DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08165
symbol: pfkA
gene_biotype: protein_coding
description:
  ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.


ensembl_gene_id: HMPREF3023_08170
symbol: OFO62247.1
gene_biotype: protein_coding
description:
  Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08180
symbol: OFO62249.1
gene_biotype: protein_coding
description:
  Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08190
symbol: murJ-2
gene_biotype: protein_coding
description:
  Lipid II flippase MurJ; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: HMPREF3023_08195
symbol: OFO62252.1
gene_biotype: protein_coding
description:
  Thiamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08210
symbol: OFO62255.1
gene_biotype: protein_coding
description:
  Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08215
symbol: OFO62256.1
gene_biotype: protein_coding
description:
  Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08220
symbol: OFO62257.1
gene_biotype: protein_coding
description:
  Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08225
symbol: pxpA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: HMPREF3023_08235
symbol: OFO62260.1
gene_biotype: protein_coding
description:
  Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08245
symbol: OFO62262.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-glutamate cyclase family.


ensembl_gene_id: HMPREF3023_08275
symbol: OFO62268.1
gene_biotype: protein_coding
description:
  RNase III inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08290
symbol: hflX
gene_biotype: protein_coding
description:
  GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: HMPREF3023_08295
symbol: OFO62271.1
gene_biotype: protein_coding
description:
  Thymidylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08300
symbol: nadE
gene_biotype: protein_coding
description:
  NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: HMPREF3023_08355
symbol: OFO62282.1
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: HMPREF3023_08370
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: HMPREF3023_08380
symbol: OFO62287.1
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.


ensembl_gene_id: HMPREF3023_08390
symbol: OFO62289.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.


ensembl_gene_id: HMPREF3023_08400
symbol: OFO62330.1
gene_biotype: protein_coding
description:
  Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08405
symbol: OFO62291.1
gene_biotype: protein_coding
description:
  Fe-S cluster assembly protein SufD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08410
symbol: OFO62292.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: HMPREF3023_08415
symbol: OFO62293.1
gene_biotype: protein_coding
description:
  Iron-sulfur cluster assembly scaffold protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08420
symbol: OFO62294.1
gene_biotype: protein_coding
description:
  AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08425
symbol: OFO62331.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase NifS; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08435
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: HMPREF3023_08440
symbol: OFO62297.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0297 family.


ensembl_gene_id: HMPREF3023_08445
symbol: OFO62298.1
gene_biotype: protein_coding
description:
  Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: HMPREF3023_08460
symbol: rnj
gene_biotype: protein_coding
description:
  Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: HMPREF3023_08475
symbol: udk
gene_biotype: protein_coding
description:
  Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08480
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: HMPREF3023_08485
symbol: rpmI
gene_biotype: protein_coding
description:
  50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: HMPREF3023_08490
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: HMPREF3023_08495
symbol: OFO62307.1
gene_biotype: protein_coding
description:
  ATP synthase subunit J; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08500
symbol: OFO62308.1
gene_biotype: protein_coding
description:
  Potassium transporter Trk; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08510
symbol: OFO62310.1
gene_biotype: protein_coding
description:
  Ubiquitin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08530
symbol: HMPREF3023_08530
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08535
symbol: thrS
gene_biotype: protein_coding
description:
  threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: HMPREF3023_08540
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: HMPREF3023_08545
symbol: OFO62316.1
gene_biotype: protein_coding
description:
  Ribosomal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08550
symbol: rpmA
gene_biotype: protein_coding
description:
  50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: HMPREF3023_08555
symbol: obg
gene_biotype: protein_coding
description:
  GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: HMPREF3023_08565
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nicotinamide nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: HMPREF3023_08580
symbol: rsfS
gene_biotype: protein_coding
description:
  Ribosome silencing factor RsfS; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: HMPREF3023_08585
symbol: OFO62324.1
gene_biotype: protein_coding
description:
  Reactive intermediate/imine deaminase; Has endoribonuclease activity on mRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08615
symbol: HMPREF3023_08615
gene_biotype: protein_coding
description:
  Serine recombinase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: HMPREF3023_08625
symbol: OFO61790.1
gene_biotype: protein_coding
description:
  Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08645
symbol: OFO61794.1
gene_biotype: protein_coding
description:
  Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08660
symbol: HMPREF3023_08660
gene_biotype: protein_coding
description:
  Mobilization protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08685
symbol: OFO61733.1
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase RumA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: HMPREF3023_08690
symbol: OFO61734.1
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08695
symbol: phnC
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.


ensembl_gene_id: HMPREF3023_08700
symbol: OFO61736.1
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08710
symbol: OFO61754.1
gene_biotype: protein_coding
description:
  Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: HMPREF3023_08725
symbol: OFO61740.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: HMPREF3023_08735
symbol: OFO61742.1
gene_biotype: protein_coding
description:
  Exoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08750
symbol: engB
gene_biotype: protein_coding
description:
  YihA family ribosome biogenesis GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: HMPREF3023_08755
symbol: lon
gene_biotype: protein_coding
description:
  Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: HMPREF3023_08760
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: HMPREF3023_08765
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: HMPREF3023_08770
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: HMPREF3023_08780
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]


ensembl_gene_id: HMPREF3023_08790
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated endonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: HMPREF3023_08795
symbol: cas1
gene_biotype: protein_coding
description:
  Subtype I-C CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: HMPREF3023_08800
symbol: OFO61553.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: HMPREF3023_08805
symbol: OFO61554.1
gene_biotype: protein_coding
description:
  Type I-C CRISPR-associated protein Cas7/Csd2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08810
symbol: OFO61555.1
gene_biotype: protein_coding
description:
  Type I-C CRISPR-associated protein Cas8c/Csd1; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08815
symbol: OFO61556.1
gene_biotype: protein_coding
description:
  Type I-C CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08820
symbol: OFO61557.1
gene_biotype: protein_coding
description:
  CRISPR-associated helicase/endonuclease Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08825
symbol: OFO61558.1
gene_biotype: protein_coding
description:
  4-phosphoerythronate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: HMPREF3023_08855
symbol: OFO61563.1
gene_biotype: protein_coding
description:
  Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08860
symbol: OFO61564.1
gene_biotype: protein_coding
description:
  Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.


ensembl_gene_id: HMPREF3023_08880
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: HMPREF3023_08890
symbol: OFO61570.1
gene_biotype: protein_coding
description:
  8-oxoguanine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08895
symbol: rex
gene_biotype: protein_coding
description:
  Redox-sensing transcriptional repressor Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: HMPREF3023_08900
symbol: OFO61572.1
gene_biotype: protein_coding
description:
  SrtB family sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08910
symbol: OFO61574.1
gene_biotype: protein_coding
description:
  Amidinotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08915
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: HMPREF3023_08930
symbol: OFO61577.1
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: HMPREF3023_08935
symbol: OFO61578.1
gene_biotype: protein_coding
description:
  Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: HMPREF3023_08945
symbol: OFO61580.1
gene_biotype: protein_coding
description:
  Aminobenzoyl-glutamate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08960
symbol: OFO61583.1
gene_biotype: protein_coding
description:
  MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_08975
symbol: OFO61586.1
gene_biotype: protein_coding
description:
  Phosphoesterase; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.


ensembl_gene_id: HMPREF3023_08985
symbol: OFO61620.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: HMPREF3023_08990
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: HMPREF3023_09015
symbol: OFO61593.1
gene_biotype: protein_coding
description:
  Thiamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09020
symbol: OFO61594.1
gene_biotype: protein_coding
description:
  Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/glutamate racemases family.


ensembl_gene_id: HMPREF3023_09025
symbol: OFO61595.1
gene_biotype: protein_coding
description:
  Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09030
symbol: OFO61596.1
gene_biotype: protein_coding
description:
  Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09040
symbol: OFO61598.1
gene_biotype: protein_coding
description:
  DUF368 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09045
symbol: OFO61599.1
gene_biotype: protein_coding
description:
  Hemerythrin HHE cation-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09070
symbol: OFO61604.1
gene_biotype: protein_coding
description:
  L(+)-tartrate dehydratase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09075
symbol: OFO61605.1
gene_biotype: protein_coding
description:
  Involved in the tartrate degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09095
symbol: OFO61609.1
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09100
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: HMPREF3023_09105
symbol: mprF
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.


ensembl_gene_id: HMPREF3023_09120
symbol: OFO61614.1
gene_biotype: protein_coding
description:
  M18 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09135
symbol: OFO61621.1
gene_biotype: protein_coding
description:
  NAD(P)(+) transhydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: HMPREF3023_09140
symbol: OFO61617.1
gene_biotype: protein_coding
description:
  NADP oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


