# geneInfo

ensembl_gene_id: A2140_00005
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: A2140_00010
symbol: OGI40294.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: A2140_00015
symbol: hslU
gene_biotype: protein_coding
description:
  HslU--HslV peptidase ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: A2140_00020
symbol: hslV
gene_biotype: protein_coding
description:
  HslU--HslV peptidase proteolytic subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: A2140_00025
symbol: OGI40297.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00045
symbol: OGI39036.1
gene_biotype: protein_coding
description:
  Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00050
symbol: OGI39029.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_00055
symbol: OGI39030.1
gene_biotype: protein_coding
description:
  Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00080
symbol: A2140_00080
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_00090
symbol: A2140_00090
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit N; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00095
symbol: OGI39035.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00125
symbol: A2140_00125
gene_biotype: protein_coding
description:
  Ammonia channel protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.


ensembl_gene_id: A2140_00145
symbol: OGI41623.1
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00150
symbol: OGI41624.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00170
symbol: nfi
gene_biotype: protein_coding
description:
  Hypothetical protein; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.


ensembl_gene_id: A2140_00190
symbol: A2140_00190
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00195
symbol: OGI41616.1
gene_biotype: protein_coding
description:
  Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00200
symbol: OGI41617.1
gene_biotype: protein_coding
description:
  MarC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00225
symbol: htpX
gene_biotype: protein_coding
description:
  Zinc metalloprotease HtpX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.


ensembl_gene_id: A2140_00230
symbol: msrP
gene_biotype: protein_coding
description:
  Mononuclear molybdenum enzyme YedY; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce bot [...]


ensembl_gene_id: A2140_00240
symbol: OGI40922.1
gene_biotype: protein_coding
description:
  MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00245
symbol: OGI40933.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00250
symbol: OGI40934.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: A2140_00260
symbol: bioC
gene_biotype: protein_coding
description:
  Cytochrome c oxidase subunit II; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.


ensembl_gene_id: A2140_00265
symbol: bioH
gene_biotype: protein_coding
description:
  Pimeloyl-[acyl-carrier protein] methyl ester esterase; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.


ensembl_gene_id: A2140_00290
symbol: A2140_00290
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_00295
symbol: OGI40935.1
gene_biotype: protein_coding
description:
  Pilus (MSHA type) biogenesis protein MshL; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00325
symbol: A2140_00325
gene_biotype: protein_coding
description:
  Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00340
symbol: A2140_00340
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_00355
symbol: OGI41571.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00365
symbol: OGI41573.1
gene_biotype: protein_coding
description:
  Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00390
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: A2140_00395
symbol: rpsI
gene_biotype: protein_coding
description:
  30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: A2140_00400
symbol: OGI41577.1
gene_biotype: protein_coding
description:
  Four helix bundle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00415
symbol: vapC
gene_biotype: protein_coding
description:
  Pilus assembly protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: A2140_00420
symbol: OGI41580.1
gene_biotype: protein_coding
description:
  AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00465
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: A2140_00520
symbol: OGI40891.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: A2140_00525
symbol: csrA
gene_biotype: protein_coding
description:
  Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.


ensembl_gene_id: A2140_00530
symbol: OGI40893.1
gene_biotype: protein_coding
description:
  Involved in methylation of ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the protein N5-glutamine methyltransferase family.


ensembl_gene_id: A2140_00570
symbol: A2140_00570
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; incomplete; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_00590
symbol: A2140_00590
gene_biotype: protein_coding
description:
  Aconitate hydratase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_00595
symbol: OGI38570.1
gene_biotype: protein_coding
description:
  ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00610
symbol: OGI38573.1
gene_biotype: protein_coding
description:
  ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00635
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: A2140_00660
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase subunit beta; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: A2140_00665
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: A2140_00675
symbol: A2140_00675
gene_biotype: protein_coding
description:
  Hypothetical protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00685
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA guanosine(34) transglycosylase Tgt; Metagenomic; derived from metagenome: subsurface metagenome.


ensembl_gene_id: A2140_00695
symbol: OGI40260.1
gene_biotype: protein_coding
description:
  Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00700
symbol: OGI40261.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: A2140_00715
symbol: OGI40263.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0276 family.


ensembl_gene_id: A2140_00755
symbol: A2140_00755
gene_biotype: protein_coding
description:
  Cation acetate symporter; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00770
symbol: OGI40314.1
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_00790
symbol: A2140_00790
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: A2140_00815
symbol: OGI39727.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial secretin family.


ensembl_gene_id: A2140_00820
symbol: OGI39728.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.


ensembl_gene_id: A2140_00845
symbol: A2140_00845
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_00885
symbol: moaC
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: A2140_00890
symbol: OGI41197.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: A2140_00895
symbol: OGI41198.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: A2140_00905
symbol: OGI41200.1
gene_biotype: protein_coding
description:
  2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00940
symbol: OGI38896.1
gene_biotype: protein_coding
description:
  3-deoxy-8-phosphooctulonate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00945
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: A2140_00950
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA lysidine(34) synthetase TilS; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: A2140_00955
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: A2140_00965
symbol: rnhB
gene_biotype: protein_coding
description:
  DNA polymerase III subunit alpha; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.


ensembl_gene_id: A2140_00970
symbol: OGI38902.1
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_00975
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: A2140_00980
symbol: fabZ
gene_biotype: protein_coding
description:
  3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: A2140_01000
symbol: purA
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase regulatory subunit; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: A2140_01015
symbol: A2140_01015
gene_biotype: protein_coding
description:
  Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: A2140_01035
symbol: rpsR
gene_biotype: protein_coding
description:
  30S ribosomal protein S6; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: A2140_01045
symbol: OGI39439.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: A2140_01050
symbol: OGI39437.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: A2140_01055
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: A2140_01060
symbol: parE
gene_biotype: protein_coding
description:
  Addiction module protein; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: A2140_01075
symbol: OGI38910.1
gene_biotype: protein_coding
description:
  Ferritin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01080
symbol: OGI38918.1
gene_biotype: protein_coding
description:
  Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01085
symbol: OGI38911.1
gene_biotype: protein_coding
description:
  Rubrerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01090
symbol: OGI38912.1
gene_biotype: protein_coding
description:
  Type IV-A pilus assembly ATPase PilB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01095
symbol: OGI38913.1
gene_biotype: protein_coding
description:
  Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01100
symbol: OGI38914.1
gene_biotype: protein_coding
description:
  Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.


ensembl_gene_id: A2140_01105
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: A2140_01110
symbol: argJ-2
gene_biotype: protein_coding
description:
  Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: A2140_01120
symbol: OGI39744.1
gene_biotype: protein_coding
description:
  Cadmium-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01175
symbol: OGI39752.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.


ensembl_gene_id: A2140_01190
symbol: sucC
gene_biotype: protein_coding
description:
  succinate--CoA ligase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: A2140_01230
symbol: A2140_01230
gene_biotype: protein_coding
description:
  Glutamine amidotransferase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0234 family.


ensembl_gene_id: A2140_01270
symbol: A2140_01270
gene_biotype: protein_coding
description:
  4-hydroxy-tetrahydrodipicolinate synthase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_01310
symbol: sdhB
gene_biotype: protein_coding
description:
  Succinate dehydrogenase flavoprotein subunit; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01315
symbol: OGI37429.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, cytochrome b556 subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01340
symbol: A2140_01340
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_01345
symbol: OGI37431.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: A2140_01375
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: A2140_01380
symbol: OGI40095.1
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01390
symbol: A2140_01390
gene_biotype: protein_coding
description:
  Succinyldiaminopimelate transaminase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01405
symbol: A2140_01405
gene_biotype: protein_coding
description:
  YggS family pyridoxal phosphate enzyme; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01415
symbol: OGI40078.1
gene_biotype: protein_coding
description:
  Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01420
symbol: lolD
gene_biotype: protein_coding
description:
  Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.


ensembl_gene_id: A2140_01430
symbol: OGI40096.1
gene_biotype: protein_coding
description:
  DNA internalization-related competence protein ComEC/Rec2; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01435
symbol: OGI40081.1
gene_biotype: protein_coding
description:
  Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01445
symbol: msbA
gene_biotype: protein_coding
description:
  Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: A2140_01450
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: A2140_01455
symbol: OGI40085.1
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0434 family.


ensembl_gene_id: A2140_01460
symbol: OGI40086.1
gene_biotype: protein_coding
description:
  3-deoxy-manno-octulosonate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the KdsB family.


ensembl_gene_id: A2140_01465
symbol: OGI40087.1
gene_biotype: protein_coding
description:
  Phosphotyrosine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: A2140_01485
symbol: OGI40091.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: A2140_01500
symbol: OGI40094.1
gene_biotype: protein_coding
description:
  Peptidase S49; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01520
symbol: OGI41292.1
gene_biotype: protein_coding
description:
  Cytochrome-c oxidase, cbb3-type subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: A2140_01525
symbol: OGI41293.1
gene_biotype: protein_coding
description:
  Cytochrome-c oxidase, cbb3-type subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01540
symbol: A2140_01540
gene_biotype: protein_coding
description:
  Cytochrome-c oxidase, cbb3-type subunit III; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01555
symbol: OGI37981.1
gene_biotype: protein_coding
description:
  Putative toxin-antitoxin system toxin component, PIN family; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01570
symbol: OGI37984.1
gene_biotype: protein_coding
description:
  glycine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01580
symbol: A2140_01580
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; incomplete; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01585
symbol: OGI37986.1
gene_biotype: protein_coding
description:
  D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01595
symbol: A2140_01595
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01605
symbol: OGI40098.1
gene_biotype: protein_coding
description:
  Sulfur relay protein DsrC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01615
symbol: A2140_01615
gene_biotype: protein_coding
description:
  3-mercaptopyruvate sulfurtransferase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01625
symbol: msrB
gene_biotype: protein_coding
description:
  Peptide-methionine (R)-S-oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: A2140_01630
symbol: OGI40102.1
gene_biotype: protein_coding
description:
  Fe2+-dependent dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01645
symbol: msrA
gene_biotype: protein_coding
description:
  Hypothetical protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: A2140_01660
symbol: OGI37931.1
gene_biotype: protein_coding
description:
  Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_01665
symbol: OGI37932.1
gene_biotype: protein_coding
description:
  Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01710
symbol: OGI37940.1
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_01725
symbol: A2140_01725
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: A2140_01730
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: A2140_01740
symbol: A2140_01740
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Frameshifted; too many ambiguous residues; incomplete; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01745
symbol: OGI41514.1
gene_biotype: protein_coding
description:
  Adenylyl-sulfate reductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01750
symbol: OGI41515.1
gene_biotype: protein_coding
description:
  50S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01780
symbol: A2140_01780
gene_biotype: protein_coding
description:
  Cytochrome c oxidase accessory protein CcoG; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.


ensembl_gene_id: A2140_01800
symbol: OGI41522.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Global transcription factor that controls the expression of over 100 target genes in response to anoxia; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01810
symbol: A2140_01810
gene_biotype: protein_coding
description:
  Cation transporter; Too many ambiguous residues; incomplete; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_01865
symbol: speE
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.


ensembl_gene_id: A2140_01885
symbol: OGI37449.1
gene_biotype: protein_coding
description:
  DUF4139 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01905
symbol: A2140_01905
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_01925
symbol: dksA
gene_biotype: protein_coding
description:
  RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: A2140_01985
symbol: A2140_01985
gene_biotype: protein_coding
description:
  Reactive intermediate/imine deaminase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02010
symbol: OGI40880.1
gene_biotype: protein_coding
description:
  YicC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02020
symbol: A2140_02020
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; incomplete; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02025
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: A2140_02030
symbol: OGI40878.1
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: A2140_02035
symbol: OGI40879.1
gene_biotype: protein_coding
description:
  YggW family oxidoreductase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: A2140_02100
symbol: A2140_02100
gene_biotype: protein_coding
description:
  Hypothetical protein; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).


ensembl_gene_id: A2140_02120
symbol: OGI41391.1
gene_biotype: protein_coding
description:
  Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.


ensembl_gene_id: A2140_02125
symbol: recA
gene_biotype: protein_coding
description:
  Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: A2140_02135
symbol: OGI41394.1
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02145
symbol: OGI38997.1
gene_biotype: protein_coding
description:
  CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02190
symbol: rsmA
gene_biotype: protein_coding
description:
  16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: A2140_02200
symbol: surA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase PdxA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.


ensembl_gene_id: A2140_02215
symbol: A2140_02215
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02225
symbol: A2140_02225
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanylyltransferase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02230
symbol: OGI39008.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: A2140_02240
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: A2140_02245
symbol: OGI40980.1
gene_biotype: protein_coding
description:
  LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02250
symbol: OGI40981.1
gene_biotype: protein_coding
description:
  LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02305
symbol: OGI40988.1
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02320
symbol: A2140_02320
gene_biotype: protein_coding
description:
  Cation efflux family transporter; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02345
symbol: atpF
gene_biotype: protein_coding
description:
  Hypothetical protein; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: A2140_02350
symbol: atpE
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: A2140_02355
symbol: atpB
gene_biotype: protein_coding
description:
  F0F1 ATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: A2140_02370
symbol: OGI40961.1
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.


ensembl_gene_id: A2140_02385
symbol: A2140_02385
gene_biotype: protein_coding
description:
  ABC-F family ATPase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02400
symbol: OGI40964.1
gene_biotype: protein_coding
description:
  Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02415
symbol: OGI40967.1
gene_biotype: protein_coding
description:
  RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02430
symbol: OGI40970.1
gene_biotype: protein_coding
description:
  Hemolysin III; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02435
symbol: OGI40971.1
gene_biotype: protein_coding
description:
  DUF5062 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02445
symbol: OGI40973.1
gene_biotype: protein_coding
description:
  Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02450
symbol: OGI41143.1
gene_biotype: protein_coding
description:
  N-ethylammeline chlorohydrolase; Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02460
symbol: gyrA
gene_biotype: protein_coding
description:
  S-methyl-5-thioribose-1-phosphate isomerase; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-d [...]


ensembl_gene_id: A2140_02470
symbol: A2140_02470
gene_biotype: protein_coding
description:
  Phosphoserine transaminase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: A2140_02475
symbol: OGI41145.1
gene_biotype: protein_coding
description:
  Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02485
symbol: A2140_02485
gene_biotype: protein_coding
description:
  Histidinol-phosphate transaminase; Frameshifted; too many ambiguous residues; incomplete; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02490
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: A2140_02500
symbol: A2140_02500
gene_biotype: protein_coding
description:
  Cytidylate kinase; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: A2140_02505
symbol: ihfB
gene_biotype: protein_coding
description:
  Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: A2140_02515
symbol: lapB
gene_biotype: protein_coding
description:
  Lipopolysaccharide assembly protein LapB; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.


ensembl_gene_id: A2140_02530
symbol: A2140_02530
gene_biotype: protein_coding
description:
  Cytochrome C oxidase Cbb3; CcoN; FixN; incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02545
symbol: OGI41137.1
gene_biotype: protein_coding
description:
  Amino acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02550
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: A2140_02555
symbol: acsA
gene_biotype: protein_coding
description:
  acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: A2140_02590
symbol: OGI38927.1
gene_biotype: protein_coding
description:
  Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02600
symbol: A2140_02600
gene_biotype: protein_coding
description:
  O-succinylhomoserine sulfhydrylase; SAM riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.


ensembl_gene_id: A2140_02630
symbol: queC
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine synthase QueC; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: A2140_02635
symbol: queE
gene_biotype: protein_coding
description:
  7-carboxy-7-deazaguanine synthase QueE; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: A2140_02640
symbol: cpoB
gene_biotype: protein_coding
description:
  Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: A2140_02645
symbol: OGI39996.1
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02650
symbol: tolB
gene_biotype: protein_coding
description:
  Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: A2140_02660
symbol: tolR
gene_biotype: protein_coding
description:
  Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: A2140_02665
symbol: OGI39999.1
gene_biotype: protein_coding
description:
  Protein TolQ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02670
symbol: OGI40000.1
gene_biotype: protein_coding
description:
  Tol-pal system-associated acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02675
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: A2140_02680
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: A2140_02685
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: A2140_02700
symbol: OGI40006.1
gene_biotype: protein_coding
description:
  Dihydroneopterin triphosphate diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02710
symbol: A2140_02710
gene_biotype: protein_coding
description:
  aspartate--tRNA ligase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02715
symbol: OGI40007.1
gene_biotype: protein_coding
description:
  FmdB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02725
symbol: A2140_02725
gene_biotype: protein_coding
description:
  2-hydroxyglutaryl-CoA dehydratase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02750
symbol: OGI41302.1
gene_biotype: protein_coding
description:
  Toxin-activating lysine-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02780
symbol: OGI41309.1
gene_biotype: protein_coding
description:
  ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02815
symbol: A2140_02815
gene_biotype: protein_coding
description:
  Efflux transporter periplasmic adaptor subunit; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02820
symbol: OGI38985.1
gene_biotype: protein_coding
description:
  3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02840
symbol: gluQ
gene_biotype: protein_coding
description:
  Alkene reductase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.


ensembl_gene_id: A2140_02860
symbol: A2140_02860
gene_biotype: protein_coding
description:
  Glycolate oxidase subunit GlcD; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02875
symbol: A2140_02875
gene_biotype: protein_coding
description:
  Phosphate ABC transporter permease subunit PstC; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02880
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: A2140_02885
symbol: OGI40249.1
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: A2140_02895
symbol: OGI40251.1
gene_biotype: protein_coding
description:
  Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.


ensembl_gene_id: A2140_02900
symbol: ppk
gene_biotype: protein_coding
description:
  RNA degradosome polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: A2140_02905
symbol: OGI40253.1
gene_biotype: protein_coding
description:
  Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02910
symbol: OGI40254.1
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: A2140_02915
symbol: OGI40255.1
gene_biotype: protein_coding
description:
  UDP-2,3-diacylglucosamine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02920
symbol: OGI40256.1
gene_biotype: protein_coding
description:
  Alpha-mannosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02930
symbol: hldD
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.


ensembl_gene_id: A2140_02940
symbol: A2140_02940
gene_biotype: protein_coding
description:
  GDP-mannose dehydrogenase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_02955
symbol: nusB
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: A2140_02960
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: A2140_02965
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: A2140_02985
symbol: OGI40271.1
gene_biotype: protein_coding
description:
  Riboflavin synthase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_02995
symbol: nrdR
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: A2140_03000
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: A2140_03030
symbol: secF
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: A2140_03035
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: A2140_03040
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase subunit YajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: A2140_03065
symbol: OGI37372.1
gene_biotype: protein_coding
description:
  AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03080
symbol: A2140_03080
gene_biotype: protein_coding
description:
  Heterodisulfide reductase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03085
symbol: OGI37374.1
gene_biotype: protein_coding
description:
  Heterodisulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03095
symbol: A2140_03095
gene_biotype: protein_coding
description:
  Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03120
symbol: uvrD
gene_biotype: protein_coding
description:
  DNA helicase II; Unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair; too many ambiguous residues; incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_03135
symbol: A2140_03135
gene_biotype: protein_coding
description:
  C4-dicarboxylate ABC transporter; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03160
symbol: OGI40036.1
gene_biotype: protein_coding
description:
  Rossman fold protein, TIGR00730 family; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.


ensembl_gene_id: A2140_03165
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: A2140_03195
symbol: A2140_03195
gene_biotype: protein_coding
description:
  2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03210
symbol: OGI39145.1
gene_biotype: protein_coding
description:
  Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: A2140_03230
symbol: trpC
gene_biotype: protein_coding
description:
  Indole-3-glycerol-phosphate synthase; Involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TrpC family.


ensembl_gene_id: A2140_03240
symbol: A2140_03240
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Frameshifted; too many ambiguous residues; incomplete; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03245
symbol: OGI39151.1
gene_biotype: protein_coding
description:
  GxxExxY protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03250
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: A2140_03280
symbol: A2140_03280
gene_biotype: protein_coding
description:
  Copper-translocating P-type ATPase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03290
symbol: OGI39828.1
gene_biotype: protein_coding
description:
  Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03300
symbol: A2140_03300
gene_biotype: protein_coding
description:
  RNA helicase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_03305
symbol: nfi-2
gene_biotype: protein_coding
description:
  Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.


ensembl_gene_id: A2140_03320
symbol: OGI38211.1
gene_biotype: protein_coding
description:
  MarC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_03330
symbol: A2140_03330
gene_biotype: protein_coding
description:
  Metal-dependent phosphohydrolase; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_03360
symbol: A2140_03360
gene_biotype: protein_coding
description:
  Adenylylsulfate reductase subunit alpha; Metagenomic; derived from metagenome: subsurface metagenome.


ensembl_gene_id: A2140_03380
symbol: A2140_03380
gene_biotype: protein_coding
description:
  Molecular chaperone; incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_03425
symbol: A2140_03425
gene_biotype: protein_coding
description:
  Hypothetical protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: A2140_03445
symbol: OGI41043.1
gene_biotype: protein_coding
description:
  DUF2281 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03455
symbol: rplC
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: A2140_03465
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: A2140_03470
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: A2140_03475
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: A2140_03480
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: A2140_03485
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: A2140_03490
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: A2140_03495
symbol: rpmC
gene_biotype: protein_coding
description:
  50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: A2140_03500
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: A2140_03505
symbol: rplN
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: A2140_03510
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: A2140_03515
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: A2140_03520
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: A2140_03525
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: A2140_03530
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: A2140_03535
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: A2140_03545
symbol: rpmD
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03550
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: A2140_03555
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: A2140_03560
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: A2140_03565
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: A2140_03570
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: A2140_03575
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: A2140_03670
symbol: A2140_03670
gene_biotype: protein_coding
description:
  D-arabinose 5-phosphate isomerase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_03675
symbol: OGI38173.1
gene_biotype: protein_coding
description:
  LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_03680
symbol: OGI38174.1
gene_biotype: protein_coding
description:
  Lipopolysaccharide transport periplasmic protein LptA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_03685
symbol: OGI38175.1
gene_biotype: protein_coding
description:
  LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03690
symbol: OGI38176.1
gene_biotype: protein_coding
description:
  RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: A2140_03695
symbol: OGI38177.1
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03715
symbol: OGI40059.1
gene_biotype: protein_coding
description:
  Transcriptional regulator CynR; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: A2140_03765
symbol: OGI40064.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: A2140_03770
symbol: OGI40065.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03840
symbol: moaA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: A2140_03845
symbol: OGI39695.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Rsd/AlgQ family.


ensembl_gene_id: A2140_03850
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: A2140_03865
symbol: OGI37789.1
gene_biotype: protein_coding
description:
  Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03880
symbol: OGI37792.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: A2140_03900
symbol: OGI38814.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: A2140_03965
symbol: OGI38823.1
gene_biotype: protein_coding
description:
  Phosphoglucomutase; Catalyzes the interconversion of alpha-D-mannose 1-phosphate to alpha-D-mannose 6-phosphate and alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_03970
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: A2140_03975
symbol: OGI38824.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: A2140_03980
symbol: OGI38825.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0758 family.


ensembl_gene_id: A2140_03985
symbol: rpmB
gene_biotype: protein_coding
description:
  50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: A2140_03990
symbol: rpmG
gene_biotype: protein_coding
description:
  50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: A2140_04015
symbol: OGI38829.1
gene_biotype: protein_coding
description:
  Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04020
symbol: OGI38830.1
gene_biotype: protein_coding
description:
  NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.


ensembl_gene_id: A2140_04045
symbol: purN
gene_biotype: protein_coding
description:
  RNA polymerase subunit sigma-24; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: A2140_04050
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04055
symbol: OGI38836.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: A2140_04065
symbol: OGI38838.1
gene_biotype: protein_coding
description:
  DnaA regulatory inactivator Hda; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DnaA family.


ensembl_gene_id: A2140_04080
symbol: A2140_04080
gene_biotype: protein_coding
description:
  NAD(P)H:quinone oxidoreductase, type IV; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.


ensembl_gene_id: A2140_04110
symbol: aspA
gene_biotype: protein_coding
description:
  Aspartate ammonia-lyase; Catalyzes the formation of fumarate from aspartate; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04130
symbol: A2140_04130
gene_biotype: protein_coding
description:
  Cation transporter; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04155
symbol: OGI38849.1
gene_biotype: protein_coding
description:
  Acylphosphatase; Catalyzes the hydrolysis of acylphosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_04160
symbol: OGI38850.1
gene_biotype: protein_coding
description:
  Transglycosylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_04190
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]


ensembl_gene_id: A2140_04235
symbol: OGI40845.1
gene_biotype: protein_coding
description:
  Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04240
symbol: OGI40846.1
gene_biotype: protein_coding
description:
  Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04270
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: A2140_04280
symbol: A2140_04280
gene_biotype: protein_coding
description:
  Di-trans,poly-cis-decaprenylcistransferase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04285
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: A2140_04290
symbol: OGI41683.1
gene_biotype: protein_coding
description:
  RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04295
symbol: bamA
gene_biotype: protein_coding
description:
  Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: A2140_04300
symbol: OGI41685.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the skp family.


ensembl_gene_id: A2140_04310
symbol: OGI39223.1
gene_biotype: protein_coding
description:
  Sulfite reductase, dissimilatory-type beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04320
symbol: A2140_04320
gene_biotype: protein_coding
description:
  Sulfite reductase, dissimilatory-type subunit alpha; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04345
symbol: OGI39218.1
gene_biotype: protein_coding
description:
  3-mercaptopyruvate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04365
symbol: A2140_04365
gene_biotype: protein_coding
description:
  PKHD-type hydroxylase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04385
symbol: OGI41233.1
gene_biotype: protein_coding
description:
  Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04400
symbol: OGI41236.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase S8 family.


ensembl_gene_id: A2140_04425
symbol: mtnB
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.


ensembl_gene_id: A2140_04435
symbol: OGI41182.1
gene_biotype: protein_coding
description:
  Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04450
symbol: rhlB
gene_biotype: protein_coding
description:
  Hypothetical protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.


ensembl_gene_id: A2140_04460
symbol: OGI41189.1
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04475
symbol: A2140_04475
gene_biotype: protein_coding
description:
  tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Metagenomic; derived from metagenome: subsurface metagenome.


ensembl_gene_id: A2140_04500
symbol: A2140_04500
gene_biotype: protein_coding
description:
  Dimethylmenaquinone methyltransferase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.


ensembl_gene_id: A2140_04505
symbol: gmhA
gene_biotype: protein_coding
description:
  Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.


ensembl_gene_id: A2140_04510
symbol: OGI38238.1
gene_biotype: protein_coding
description:
  YraN family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.


ensembl_gene_id: A2140_04525
symbol: rsmI
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: A2140_04535
symbol: mraZ
gene_biotype: protein_coding
description:
  Cell division/cell wall cluster transcriptional repressor MraZ; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MraZ family.


ensembl_gene_id: A2140_04540
symbol: rsmH
gene_biotype: protein_coding
description:
  16S rRNA (cytosine(1402)-N(4))-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: A2140_04550
symbol: ftsI
gene_biotype: protein_coding
description:
  Cell division protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.


ensembl_gene_id: A2140_04570
symbol: mraY
gene_biotype: protein_coding
description:
  Hypothetical protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: A2140_04605
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: A2140_04610
symbol: ftsQ
gene_biotype: protein_coding
description:
  Hypothetical protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.


ensembl_gene_id: A2140_04615
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: A2140_04620
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: A2140_04625
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: A2140_04635
symbol: OGI38254.1
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_04650
symbol: OGI37262.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: A2140_04665
symbol: A2140_04665
gene_biotype: protein_coding
description:
  NADP-dependent isocitrate dehydrogenase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04670
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adapter ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: A2140_04675
symbol: OGI37278.1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family.


ensembl_gene_id: A2140_04700
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: A2140_04710
symbol: bpt
gene_biotype: protein_coding
description:
  Hypothetical protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: A2140_04715
symbol: aat
gene_biotype: protein_coding
description:
  leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: A2140_04735
symbol: A2140_04735
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: A2140_04740
symbol: OGI37274.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: A2140_04745
symbol: OGI37275.1
gene_biotype: protein_coding
description:
  TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04755
symbol: OGI37279.1
gene_biotype: protein_coding
description:
  Macrolide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04770
symbol: A2140_04770
gene_biotype: protein_coding
description:
  Ribonucleoside reductase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_04775
symbol: OGI41640.1
gene_biotype: protein_coding
description:
  Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04800
symbol: A2140_04800
gene_biotype: protein_coding
description:
  LysR family transcriptional regulator; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04805
symbol: OGI41645.1
gene_biotype: protein_coding
description:
  Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04810
symbol: OGI41646.1
gene_biotype: protein_coding
description:
  Long-chain fatty acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04815
symbol: OGI41647.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04820
symbol: OGI41648.1
gene_biotype: protein_coding
description:
  Preprotein translocase subunit TatC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: A2140_04830
symbol: OGI41652.1
gene_biotype: protein_coding
description:
  Sulfur oxidation c-type cytochrome SoxX; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04840
symbol: OGI39042.1
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_04850
symbol: dusB
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.


ensembl_gene_id: A2140_04855
symbol: OGI39044.1
gene_biotype: protein_coding
description:
  Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transcriptional regulatory Fis family.


ensembl_gene_id: A2140_04865
symbol: purD
gene_biotype: protein_coding
description:
  Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family.


ensembl_gene_id: A2140_04870
symbol: OGI39046.1
gene_biotype: protein_coding
description:
  tRNA threonylcarbamoyladenosine biosynthesis protein RimN; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.


ensembl_gene_id: A2140_04895
symbol: hemF
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: A2140_04900
symbol: OGI39050.1
gene_biotype: protein_coding
description:
  acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04925
symbol: nnrD
gene_biotype: protein_coding
description:
  NAD(P)H-hydrate dehydratase; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.


ensembl_gene_id: A2140_04930
symbol: OGI39202.1
gene_biotype: protein_coding
description:
  tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04960
symbol: A2140_04960
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_04965
symbol: OGI39206.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05030
symbol: OGI37465.1
gene_biotype: protein_coding
description:
  ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05040
symbol: OGI37486.1
gene_biotype: protein_coding
description:
  Alkene reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05050
symbol: OGI37468.1
gene_biotype: protein_coding
description:
  Quercetin 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family.


ensembl_gene_id: A2140_05100
symbol: A2140_05100
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: A2140_05110
symbol: OGI37476.1
gene_biotype: protein_coding
description:
  SseB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05115
symbol: OGI37477.1
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: A2140_05130
symbol: A2140_05130
gene_biotype: protein_coding
description:
  Biotin synthase BioB; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.


ensembl_gene_id: A2140_05140
symbol: OGI37481.1
gene_biotype: protein_coding
description:
  YfcE family phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05145
symbol: hppA
gene_biotype: protein_coding
description:
  Sodium-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: A2140_05170
symbol: A2140_05170
gene_biotype: protein_coding
description:
  Oxidoreductase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05175
symbol: OGI41322.1
gene_biotype: protein_coding
description:
  Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05185
symbol: OGI41324.1
gene_biotype: protein_coding
description:
  Hydrogenase 4 subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05190
symbol: OGI41325.1
gene_biotype: protein_coding
description:
  Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05225
symbol: A2140_05225
gene_biotype: protein_coding
description:
  Hypoxanthine-guanine phosphoribosyltransferase; Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_05230
symbol: OGI40397.1
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05240
symbol: A2140_05240
gene_biotype: protein_coding
description:
  UDP-glucose 6-dehydrogenase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: A2140_05245
symbol: OGI40399.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: A2140_05250
symbol: OGI40400.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: A2140_05260
symbol: OGI40402.1
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: A2140_05265
symbol: OGI40403.1
gene_biotype: protein_coding
description:
  Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05270
symbol: OGI40404.1
gene_biotype: protein_coding
description:
  Addiction module antidote protein, HigA family; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05275
symbol: OGI40405.1
gene_biotype: protein_coding
description:
  Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05315
symbol: A2140_05315
gene_biotype: protein_coding
description:
  23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05330
symbol: OGI37817.1
gene_biotype: protein_coding
description:
  Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05345
symbol: A2140_05345
gene_biotype: protein_coding
description:
  Cytochrome C oxidase Cbb3; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05350
symbol: OGI41191.1
gene_biotype: protein_coding
description:
  Two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_05360
symbol: napF
gene_biotype: protein_coding
description:
  Ferredoxin-type protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.


ensembl_gene_id: A2140_05365
symbol: napD
gene_biotype: protein_coding
description:
  Hypothetical protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.


ensembl_gene_id: A2140_05370
symbol: napA
gene_biotype: protein_coding
description:
  Nitrate reductase catalytic subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.


ensembl_gene_id: A2140_05385
symbol: A2140_05385
gene_biotype: protein_coding
description:
  AAA family ATPase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RuBisCO large chain family.


ensembl_gene_id: A2140_05390
symbol: OGI41558.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: A2140_05415
symbol: OGI41547.1
gene_biotype: protein_coding
description:
  DUF3368 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05430
symbol: OGI41550.1
gene_biotype: protein_coding
description:
  Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05435
symbol: OGI41551.1
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: A2140_05440
symbol: OGI41552.1
gene_biotype: protein_coding
description:
  Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyruvate kinase family.


ensembl_gene_id: A2140_05445
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: A2140_05455
symbol: A2140_05455
gene_biotype: protein_coding
description:
  Type I glyceraldehyde-3-phosphate dehydrogenase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: A2140_05460
symbol: OGI41559.1
gene_biotype: protein_coding
description:
  Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05465
symbol: OGI41555.1
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05475
symbol: bioA
gene_biotype: protein_coding
description:
  Adenosylmethionine--8-amino-7-oxononanoate transaminase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.


ensembl_gene_id: A2140_05485
symbol: uvrD-2
gene_biotype: protein_coding
description:
  DNA helicase II; Unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair; too many ambiguous residues; incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_05495
symbol: OGI40053.1
gene_biotype: protein_coding
description:
  Sulfite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05515
symbol: vapC-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: A2140_05545
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: A2140_05555
symbol: A2140_05555
gene_biotype: protein_coding
description:
  isoleucine--tRNA ligase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.


ensembl_gene_id: A2140_05565
symbol: murJ
gene_biotype: protein_coding
description:
  Murein biosynthesis integral membrane protein MurJ; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: A2140_05595
symbol: A2140_05595
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic acid transferase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05605
symbol: OGI41478.1
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05610
symbol: thiC
gene_biotype: protein_coding
description:
  Phosphomethylpyrimidine synthase ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: A2140_05620
symbol: OGI41480.1
gene_biotype: protein_coding
description:
  Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05625
symbol: OGI41481.1
gene_biotype: protein_coding
description:
  Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05630
symbol: OGI41482.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05640
symbol: A2140_05640
gene_biotype: protein_coding
description:
  Pseudouridine synthase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05655
symbol: OGI41485.1
gene_biotype: protein_coding
description:
  Rhombotarget lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05665
symbol: A2140_05665
gene_biotype: protein_coding
description:
  Agglutinin biogenesis protein MshI; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_05715
symbol: A2140_05715
gene_biotype: protein_coding
description:
  Ammonia channel protein; Frameshifted; incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.


ensembl_gene_id: A2140_05735
symbol: A2140_05735
gene_biotype: protein_coding
description:
  Among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05745
symbol: OGI41207.1
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05755
symbol: A2140_05755
gene_biotype: protein_coding
description:
  Dihydrolipoamide succinyltransferase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05765
symbol: mpl
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.


ensembl_gene_id: A2140_05770
symbol: rnd
gene_biotype: protein_coding
description:
  Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.


ensembl_gene_id: A2140_05785
symbol: OGI38960.1
gene_biotype: protein_coding
description:
  Zinc-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05795
symbol: OGI38962.1
gene_biotype: protein_coding
description:
  Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05805
symbol: OGI38964.1
gene_biotype: protein_coding
description:
  Protein nirF; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05810
symbol: OGI38965.1
gene_biotype: protein_coding
description:
  AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05830
symbol: A2140_05830
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: A2140_05840
symbol: OGI41249.1
gene_biotype: protein_coding
description:
  Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05860
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: A2140_05905
symbol: OGI38588.1
gene_biotype: protein_coding
description:
  O-acetyl-ADP-ribose deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05930
symbol: OGI38593.1
gene_biotype: protein_coding
description:
  Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: A2140_05935
symbol: OGI38594.1
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: A2140_05950
symbol: OGI38612.1
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05960
symbol: tatA
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: A2140_05965
symbol: hisE
gene_biotype: protein_coding
description:
  phosphoribosyl-ATP diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05970
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: A2140_05975
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: A2140_05980
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_05985
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: A2140_05995
symbol: hisC
gene_biotype: protein_coding
description:
  Imidazoleglycerol-phosphate dehydratase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: A2140_06000
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: A2140_06005
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: A2140_06010
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: A2140_06015
symbol: OGI38606.1
gene_biotype: protein_coding
description:
  Monothiol glutaredoxin, Grx4 family; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: A2140_06020
symbol: OGI38614.1
gene_biotype: protein_coding
description:
  BolA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BolA/IbaG family.


ensembl_gene_id: A2140_06025
symbol: OGI38607.1
gene_biotype: protein_coding
description:
  Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06045
symbol: OGI38611.1
gene_biotype: protein_coding
description:
  Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06050
symbol: OGI38615.1
gene_biotype: protein_coding
description:
  ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06065
symbol: ilvA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: A2140_06070
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: A2140_06100
symbol: OGI40998.1
gene_biotype: protein_coding
description:
  Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06120
symbol: A2140_06120
gene_biotype: protein_coding
description:
  Cell division protein FtsH; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06130
symbol: A2140_06130
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06135
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: A2140_06140
symbol: OGI40243.1
gene_biotype: protein_coding
description:
  Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: A2140_06160
symbol: OGI40246.1
gene_biotype: protein_coding
description:
  Peptidase C39; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_06185
symbol: A2140_06185
gene_biotype: protein_coding
description:
  ArsR family transcriptional regulator; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_06195
symbol: arsM
gene_biotype: protein_coding
description:
  Methyltransferase type 11; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_06220
symbol: OGI41240.1
gene_biotype: protein_coding
description:
  HPr(Ser) kinase/phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the HPrK/P family.


ensembl_gene_id: A2140_06235
symbol: OGI41243.1
gene_biotype: protein_coding
description:
  Phosphocarrier protein HPr; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06240
symbol: OGI41244.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate--protein phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06245
symbol: OGI41245.1
gene_biotype: protein_coding
description:
  Plasmid maintenance system killer; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06275
symbol: OGI37647.1
gene_biotype: protein_coding
description:
  50S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_06305
symbol: A2140_06305
gene_biotype: protein_coding
description:
  Adenylyl-sulfate reductase subunit alpha; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06310
symbol: sat
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfate adenylyltransferase family.


ensembl_gene_id: A2140_06320
symbol: A2140_06320
gene_biotype: protein_coding
description:
  Molybdopterin synthase sulfur carrier subunit; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06330
symbol: OGI37656.1
gene_biotype: protein_coding
description:
  Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06335
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: A2140_06340
symbol: OGI37658.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06380
symbol: OGI37663.1
gene_biotype: protein_coding
description:
  YggU family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0235 family.


ensembl_gene_id: A2140_06390
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: A2140_06395
symbol: OGI37666.1
gene_biotype: protein_coding
description:
  Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06400
symbol: OGI37667.1
gene_biotype: protein_coding
description:
  Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06415
symbol: OGI37669.1
gene_biotype: protein_coding
description:
  Integron cassette protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06430
symbol: OGI37671.1
gene_biotype: protein_coding
description:
  Dihydroorotase; Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06435
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: A2140_06440
symbol: OGI37682.1
gene_biotype: protein_coding
description:
  Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06460
symbol: OGI37673.1
gene_biotype: protein_coding
description:
  Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06470
symbol: A2140_06470
gene_biotype: protein_coding
description:
  Glutathione synthase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06475
symbol: OGI37675.1
gene_biotype: protein_coding
description:
  Pilus assembly protein PilG; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06480
symbol: OGI37676.1
gene_biotype: protein_coding
description:
  Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06530
symbol: OGI39756.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family.


ensembl_gene_id: A2140_06535
symbol: bamE
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: A2140_06540
symbol: fur
gene_biotype: protein_coding
description:
  Transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.


ensembl_gene_id: A2140_06545
symbol: OGI39759.1
gene_biotype: protein_coding
description:
  Zinc/manganese transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06550
symbol: OGI39767.1
gene_biotype: protein_coding
description:
  Zinc ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06565
symbol: OGI39761.1
gene_biotype: protein_coding
description:
  GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the acetyltransferase family.


ensembl_gene_id: A2140_06575
symbol: nadK
gene_biotype: protein_coding
description:
  NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: A2140_06580
symbol: hrcA
gene_biotype: protein_coding
description:
  Hypothetical protein; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: A2140_06585
symbol: grpE
gene_biotype: protein_coding
description:
  Nucleotide exchange factor GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds [...]


ensembl_gene_id: A2140_06635
symbol: crcB
gene_biotype: protein_coding
description:
  Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: A2140_06645
symbol: serS
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: A2140_06685
symbol: A2140_06685
gene_biotype: protein_coding
description:
  uroporphyrinogen-III C-methyltransferase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06695
symbol: OGI41270.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.


ensembl_gene_id: A2140_06700
symbol: OGI41271.1
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06705
symbol: OGI41272.1
gene_biotype: protein_coding
description:
  Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06725
symbol: A2140_06725
gene_biotype: protein_coding
description:
  Glutamate synthase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06730
symbol: OGI41276.1
gene_biotype: protein_coding
description:
  Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06735
symbol: OGI41277.1
gene_biotype: protein_coding
description:
  Sulfurtransferase TusE; Transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06740
symbol: OGI41280.1
gene_biotype: protein_coding
description:
  Sulfurtransferase TusB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06745
symbol: OGI41278.1
gene_biotype: protein_coding
description:
  Sulfurtransferase TusC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06750
symbol: OGI41279.1
gene_biotype: protein_coding
description:
  Sulfurtransferase TusD; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06760
symbol: A2140_06760
gene_biotype: protein_coding
description:
  Restriction endonuclease; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_06780
symbol: A2140_06780
gene_biotype: protein_coding
description:
  Putative toxin-antitoxin system toxin component, PIN family; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06785
symbol: rimP
gene_biotype: protein_coding
description:
  Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: A2140_06790
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: A2140_06800
symbol: rbfA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: A2140_06805
symbol: OGI39597.1
gene_biotype: protein_coding
description:
  tRNA pseudouridine(55) synthase TruB; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: A2140_06810
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: A2140_06815
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: A2140_06845
symbol: mtnC
gene_biotype: protein_coding
description:
  2,3-diketo-5-methylthio-1-phosphopentane phosphatase; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). Belongs to the HAD-like hydrolase superfamily. MasA/MtnC family.


ensembl_gene_id: A2140_06855
symbol: OGI39815.1
gene_biotype: protein_coding
description:
  DNA (cytosine-5-)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06860
symbol: OGI39816.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.


ensembl_gene_id: A2140_06880
symbol: A2140_06880
gene_biotype: protein_coding
description:
  Carbohydrate kinase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06935
symbol: A2140_06935
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_06950
symbol: cysS
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: A2140_06955
symbol: gltX
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: A2140_06960
symbol: OGI41031.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: A2140_06965
symbol: lpxH
gene_biotype: protein_coding
description:
  UDP-2,3-diacylglucosamine diphosphatase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: A2140_06990
symbol: A2140_06990
gene_biotype: protein_coding
description:
  L-aspartate oxidase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: A2140_07005
symbol: OGI40111.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S1C family.


ensembl_gene_id: A2140_07010
symbol: lepA
gene_biotype: protein_coding
description:
  Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: A2140_07015
symbol: OGI40113.1
gene_biotype: protein_coding
description:
  Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.


ensembl_gene_id: A2140_07025
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: A2140_07040
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: A2140_07045
symbol: acpS
gene_biotype: protein_coding
description:
  holo-ACP synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: A2140_07065
symbol: OGI40121.1
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07070
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: A2140_07085
symbol: thrS
gene_biotype: protein_coding
description:
  threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: A2140_07090
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: A2140_07095
symbol: rpmI
gene_biotype: protein_coding
description:
  50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: A2140_07100
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: A2140_07105
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: A2140_07110
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: A2140_07115
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: A2140_07130
symbol: surE
gene_biotype: protein_coding
description:
  5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: A2140_07135
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: A2140_07145
symbol: rpoS
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.


ensembl_gene_id: A2140_07155
symbol: OGI40133.1
gene_biotype: protein_coding
description:
  Alanine transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07160
symbol: OGI40134.1
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07165
symbol: OGI40135.1
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: A2140_07190
symbol: A2140_07190
gene_biotype: protein_coding
description:
  Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: A2140_07230
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: A2140_07240
symbol: OGI38641.1
gene_biotype: protein_coding
description:
  Formate transporter FocA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07260
symbol: OGI39864.1
gene_biotype: protein_coding
description:
  Heme ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07280
symbol: OGI39868.1
gene_biotype: protein_coding
description:
  Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07285
symbol: OGI39875.1
gene_biotype: protein_coding
description:
  Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.


ensembl_gene_id: A2140_07290
symbol: OGI39869.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07300
symbol: OGI39871.1
gene_biotype: protein_coding
description:
  HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07305
symbol: OGI39872.1
gene_biotype: protein_coding
description:
  Sulfite reductase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07335
symbol: prs
gene_biotype: protein_coding
description:
  tRNA-Gln; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: A2140_07340
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25/general stress protein Ctc; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: A2140_07345
symbol: pth
gene_biotype: protein_coding
description:
  aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: A2140_07350
symbol: ychF
gene_biotype: protein_coding
description:
  Redox-regulated ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: A2140_07365
symbol: OGI38523.1
gene_biotype: protein_coding
description:
  Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07370
symbol: OGI38524.1
gene_biotype: protein_coding
description:
  DNA modification methylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: A2140_07380
symbol: OGI38281.1
gene_biotype: protein_coding
description:
  MSHA biogenesis protein MshG; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07385
symbol: OGI38282.1
gene_biotype: protein_coding
description:
  MSHA biogenesis protein MshE; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07405
symbol: A2140_07405
gene_biotype: protein_coding
description:
  Protein-export chaperone SecB; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: A2140_07460
symbol: ubiB
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis regulatory protein kinase UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.


ensembl_gene_id: A2140_07470
symbol: ubiE
gene_biotype: protein_coding
description:
  Hypothetical protein; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: A2140_07475
symbol: OGI38292.1
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07480
symbol: OGI38293.1
gene_biotype: protein_coding
description:
  Phosphate regulon transcriptional regulatory protein PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07550
symbol: A2140_07550
gene_biotype: protein_coding
description:
  Protease; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: A2140_07555
symbol: bamB
gene_biotype: protein_coding
description:
  Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: A2140_07575
symbol: A2140_07575
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07590
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA (adenine(2503)-C(2))-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: A2140_07595
symbol: OGI37589.1
gene_biotype: protein_coding
description:
  Fe-S assembly protein IscX; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07600
symbol: OGI37576.1
gene_biotype: protein_coding
description:
  Ferredoxin, 2Fe-2S type, ISC system; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07610
symbol: hscB
gene_biotype: protein_coding
description:
  Fe-S protein assembly chaperone HscA; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family.


ensembl_gene_id: A2140_07615
symbol: OGI37577.1
gene_biotype: protein_coding
description:
  Iron-sulfur cluster assembly protein IscA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.


ensembl_gene_id: A2140_07620
symbol: OGI37578.1
gene_biotype: protein_coding
description:
  Fe-S cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.


ensembl_gene_id: A2140_07625
symbol: iscS
gene_biotype: protein_coding
description:
  IscS subfamily cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.


ensembl_gene_id: A2140_07630
symbol: OGI37580.1
gene_biotype: protein_coding
description:
  Fe-S cluster assembly transcriptional regulator IscR; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07635
symbol: OGI37581.1
gene_biotype: protein_coding
description:
  Serine O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07640
symbol: trmJ
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: A2140_07645
symbol: OGI37583.1
gene_biotype: protein_coding
description:
  Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily.


ensembl_gene_id: A2140_07655
symbol: OGI37591.1
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: A2140_07665
symbol: OGI37586.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: A2140_07670
symbol: OGI41281.1
gene_biotype: protein_coding
description:
  Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07680
symbol: OGI41283.1
gene_biotype: protein_coding
description:
  Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07685
symbol: OGI41284.1
gene_biotype: protein_coding
description:
  Nitrite reductase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: A2140_07710
symbol: guaA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: A2140_07725
symbol: A2140_07725
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII large subunit; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07745
symbol: OGI37998.1
gene_biotype: protein_coding
description:
  Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.


ensembl_gene_id: A2140_07750
symbol: OGI37999.1
gene_biotype: protein_coding
description:
  Oxaloacetate decarboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07755
symbol: OGI38000.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: A2140_07765
symbol: rpmF
gene_biotype: protein_coding
description:
  50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: A2140_07770
symbol: plsX
gene_biotype: protein_coding
description:
  Phosphate acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: A2140_07780
symbol: A2140_07780
gene_biotype: protein_coding
description:
  3-oxoacyl-ACP synthase; FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07795
symbol: OGI38019.1
gene_biotype: protein_coding
description:
  Beta-ketoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: A2140_07800
symbol: OGI38020.1
gene_biotype: protein_coding
description:
  Aminodeoxychorismate synthase, component I; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07805
symbol: OGI38021.1
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07830
symbol: OGI38008.1
gene_biotype: protein_coding
description:
  Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07865
symbol: uvrC
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: A2140_07875
symbol: A2140_07875
gene_biotype: protein_coding
description:
  SPO1 DNA polymerase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.


ensembl_gene_id: A2140_07880
symbol: nagZ
gene_biotype: protein_coding
description:
  beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.


ensembl_gene_id: A2140_07890
symbol: rlmD
gene_biotype: protein_coding
description:
  23S rRNA (uracil(1939)-C(5))-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.


ensembl_gene_id: A2140_07895
symbol: OGI38016.1
gene_biotype: protein_coding
description:
  3'-5' exonuclease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_07975
symbol: A2140_07975
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit A; Too many ambiguous residues; incomplete; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_07980
symbol: OGI41086.1
gene_biotype: protein_coding
description:
  Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: A2140_07990
symbol: A2140_07990
gene_biotype: protein_coding
description:
  Histidine triad nucleotide-binding protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_07995
symbol: OGI41088.1
gene_biotype: protein_coding
description:
  DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: A2140_08030
symbol: mutM
gene_biotype: protein_coding
description:
  DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: A2140_08120
symbol: OGI40902.1
gene_biotype: protein_coding
description:
  Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08130
symbol: A2140_08130
gene_biotype: protein_coding
description:
  Antibiotic biosynthesis monooxygenase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08140
symbol: purT
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.


ensembl_gene_id: A2140_08145
symbol: OGI40221.1
gene_biotype: protein_coding
description:
  YgiQ family radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08160
symbol: coaX
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: A2140_08190
symbol: efp
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: A2140_08205
symbol: orn
gene_biotype: protein_coding
description:
  Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: A2140_08220
symbol: queG
gene_biotype: protein_coding
description:
  tRNA epoxyqueuosine(34) reductase QueG; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: A2140_08265
symbol: OGI38946.1
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: A2140_08280
symbol: OGI38956.1
gene_biotype: protein_coding
description:
  SirA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: A2140_08285
symbol: OGI38948.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: A2140_08290
symbol: OGI38949.1
gene_biotype: protein_coding
description:
  Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08300
symbol: ntrC
gene_biotype: protein_coding
description:
  Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: A2140_08315
symbol: OGI38953.1
gene_biotype: protein_coding
description:
  SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_08390
symbol: OGI37242.1
gene_biotype: protein_coding
description:
  Delta-aminolevulinic acid dehydratase; Catalyzes the formation of porphobilinogen from 5-aminolevulinate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ALAD family.


ensembl_gene_id: A2140_08430
symbol: mltF
gene_biotype: protein_coding
description:
  Hypothetical protein; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella.


ensembl_gene_id: A2140_08455
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: A2140_08470
symbol: OGI39742.1
gene_biotype: protein_coding
description:
  Nucleoid-associated protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: A2140_08485
symbol: OGI40281.1
gene_biotype: protein_coding
description:
  D-hexose-6-phosphate mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glucose-6-phosphate 1-epimerase family.


ensembl_gene_id: A2140_08490
symbol: OGI40286.1
gene_biotype: protein_coding
description:
  Plastocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08535
symbol: OGI40285.1
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08565
symbol: argB-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: A2140_08595
symbol: lptD
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.


ensembl_gene_id: A2140_08600
symbol: OGI40045.1
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08620
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: A2140_08655
symbol: OGI40483.1
gene_biotype: protein_coding
description:
  EVE domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08660
symbol: OGI40484.1
gene_biotype: protein_coding
description:
  Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08675
symbol: ssrS
gene_biotype: protein_coding
description:
  6S RNA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: A2140_08680
symbol: OGI40486.1
gene_biotype: protein_coding
description:
  TIGR02449 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08700
symbol: OGI40488.1
gene_biotype: protein_coding
description:
  Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08710
symbol: OGI41534.1
gene_biotype: protein_coding
description:
  Thiosulfate oxidation carrier complex protein SoxZ; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08715
symbol: OGI41539.1
gene_biotype: protein_coding
description:
  Sulfur oxidation c-type cytochrome SoxA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08720
symbol: OGI41535.1
gene_biotype: protein_coding
description:
  Thiosulfohydrolase SoxB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: A2140_08725
symbol: OGI41536.1
gene_biotype: protein_coding
description:
  Phosphoribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08735
symbol: OGI41537.1
gene_biotype: protein_coding
description:
  Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08740
symbol: OGI41538.1
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: A2140_08750
symbol: OGI39771.1
gene_biotype: protein_coding
description:
  Plasmid maintenance system killer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08775
symbol: dnaG
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoD; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: A2140_08780
symbol: OGI39775.1
gene_biotype: protein_coding
description:
  glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08790
symbol: tsaD
gene_biotype: protein_coding
description:
  30S ribosomal protein S21; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: A2140_08805
symbol: plsY
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: A2140_08810
symbol: OGI39780.1
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: A2140_08815
symbol: OGI39781.1
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08825
symbol: OGI39783.1
gene_biotype: protein_coding
description:
  Involved in pteridine salvage and antifolate resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08835
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: A2140_08845
symbol: cca
gene_biotype: protein_coding
description:
  2',3'-cyclic phosphodiesterase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.


ensembl_gene_id: A2140_08850
symbol: OGI39788.1
gene_biotype: protein_coding
description:
  Aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_08880
symbol: lgt
gene_biotype: protein_coding
description:
  Succinate-semialdehyde dehydrogenase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: A2140_08945
symbol: argS
gene_biotype: protein_coding
description:
  arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_08970
symbol: A2140_08970
gene_biotype: protein_coding
description:
  Spermidine synthase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09000
symbol: rpsB
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: A2140_09005
symbol: map
gene_biotype: protein_coding
description:
  Type I methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: A2140_09010
symbol: OGI40041.1
gene_biotype: protein_coding
description:
  [protein-PII] uridylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GlnD family.


ensembl_gene_id: A2140_09015
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: A2140_09025
symbol: OGI39733.1
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_09045
symbol: A2140_09045
gene_biotype: protein_coding
description:
  Argininosuccinate lyase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09050
symbol: OGI39737.1
gene_biotype: protein_coding
description:
  Nucleotide pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09060
symbol: A2140_09060
gene_biotype: protein_coding
description:
  Copper resistance protein CopA; Internal stop; incomplete; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09075
symbol: A2140_09075
gene_biotype: protein_coding
description:
  ATPase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_09110
symbol: lolA
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: A2140_09115
symbol: OGI37959.1
gene_biotype: protein_coding
description:
  Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09120
symbol: OGI37970.1
gene_biotype: protein_coding
description:
  Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09125
symbol: OGI37960.1
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09130
symbol: OGI37961.1
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09145
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: A2140_09150
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: A2140_09165
symbol: def-2
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: A2140_09180
symbol: OGI37969.1
gene_biotype: protein_coding
description:
  Methylthioadenosine phosphorylase; Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage.


ensembl_gene_id: A2140_09205
symbol: OGI41289.1
gene_biotype: protein_coding
description:
  Phosphoribosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09210
symbol: OGI41290.1
gene_biotype: protein_coding
description:
  AMMECR1 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09260
symbol: OGI40867.1
gene_biotype: protein_coding
description:
  16S rRNA pseudouridine(516) synthase; Catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: A2140_09265
symbol: metAS
gene_biotype: protein_coding
description:
  Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.


ensembl_gene_id: A2140_09285
symbol: OGI38440.1
gene_biotype: protein_coding
description:
  Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09310
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: A2140_09315
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: A2140_09330
symbol: gltD
gene_biotype: protein_coding
description:
  Glutamate synthase subunit alpha; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09335
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: A2140_09365
symbol: A2140_09365
gene_biotype: protein_coding
description:
  MBL fold metallo-hydrolase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09395
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: A2140_09450
symbol: A2140_09450
gene_biotype: protein_coding
description:
  Glycerol acyltransferase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_09455
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: A2140_09510
symbol: A2140_09510
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate decarboxylase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_09525
symbol: OGI38315.1
gene_biotype: protein_coding
description:
  Chromate resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09540
symbol: A2140_09540
gene_biotype: protein_coding
description:
  Sulfurtransferase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_09550
symbol: OGI38318.1
gene_biotype: protein_coding
description:
  23S rRNA pseudouridylate synthase B; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: A2140_09560
symbol: OGI38320.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: A2140_09565
symbol: OGI38321.1
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: A2140_09580
symbol: A2140_09580
gene_biotype: protein_coding
description:
  GTPase HflX; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: A2140_09585
symbol: lysS
gene_biotype: protein_coding
description:
  lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: A2140_09590
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: A2140_09700
symbol: panB
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: A2140_09715
symbol: A2140_09715
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: A2140_09755
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: A2140_09775
symbol: OGI38271.1
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.


ensembl_gene_id: A2140_09785
symbol: A2140_09785
gene_biotype: protein_coding
description:
  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09790
symbol: OGI38273.1
gene_biotype: protein_coding
description:
  50S ribosomal protein L25/general stress protein Ctc; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: A2140_09820
symbol: A2140_09820
gene_biotype: protein_coding
description:
  Nitrate reductase catalytic subunit; Too many ambiguous residues; incomplete; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09850
symbol: OGI37832.1
gene_biotype: protein_coding
description:
  Energy-dependent translational throttle protein EttA; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09860
symbol: OGI37834.1
gene_biotype: protein_coding
description:
  Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.


ensembl_gene_id: A2140_09865
symbol: OGI37835.1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: A2140_09870
symbol: argD
gene_biotype: protein_coding
description:
  Acetylornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: A2140_09935
symbol: A2140_09935
gene_biotype: protein_coding
description:
  Type IV-A pilus assembly ATPase PilB; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09950
symbol: A2140_09950
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_09975
symbol: A2140_09975
gene_biotype: protein_coding
description:
  ABC transporter; Frameshifted; too many ambiguous residues; incomplete; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: A2140_10040
symbol: ctaG
gene_biotype: protein_coding
description:
  Cytochrome c oxidase assembly protein; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.


ensembl_gene_id: A2140_10060
symbol: A2140_10060
gene_biotype: protein_coding
description:
  Cytochrome c oxidase subunit I; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: A2140_10070
symbol: A2140_10070
gene_biotype: protein_coding
description:
  Haloacid dehalogenase; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the Nudix hydrolase family.


ensembl_gene_id: A2140_10110
symbol: A2140_10110
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_10120
symbol: purC
gene_biotype: protein_coding
description:
  Hypothetical protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SAICAR synthetase family.


ensembl_gene_id: A2140_10155
symbol: OGI39840.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_10185
symbol: greB
gene_biotype: protein_coding
description:
  Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.


ensembl_gene_id: A2140_10190
symbol: OGI38467.1
gene_biotype: protein_coding
description:
  Magnesium transporter MgtC; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_10195
symbol: OGI38468.1
gene_biotype: protein_coding
description:
  3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: A2140_10215
symbol: A2140_10215
gene_biotype: protein_coding
description:
  Methionine synthase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_10240
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: A2140_10275
symbol: OGI38480.1
gene_biotype: protein_coding
description:
  LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: A2140_10280
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: A2140_10295
symbol: asd
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: A2140_10310
symbol: OGI38484.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: A2140_10315
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: A2140_10325
symbol: A2140_10325
gene_biotype: protein_coding
description:
  Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the MtfA family.


ensembl_gene_id: A2140_10360
symbol: tig
gene_biotype: protein_coding
description:
  tRNA-Leu; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: A2140_10365
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: A2140_10370
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: A2140_10375
symbol: lon
gene_biotype: protein_coding
description:
  Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: A2140_10380
symbol: OGI38489.1
gene_biotype: protein_coding
description:
  DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: A2140_10400
symbol: OGI38491.1
gene_biotype: protein_coding
description:
  Enoyl-[acyl-carrier-protein] reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_10445
symbol: A2140_10445
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_10450
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: A2140_10470
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: A2140_10580
symbol: xseB
gene_biotype: protein_coding
description:
  Geranyl transferase; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: A2140_10605
symbol: A2140_10605
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.


ensembl_gene_id: A2140_10640
symbol: OGI41346.1
gene_biotype: protein_coding
description:
  Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_10675
symbol: OGI41340.1
gene_biotype: protein_coding
description:
  Thiosulfate oxidation carrier protein SoxY; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_10700
symbol: A2140_10700
gene_biotype: protein_coding
description:
  Phosphoribulokinase; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.


ensembl_gene_id: A2140_10720
symbol: gluQ-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.


ensembl_gene_id: A2140_10735
symbol: rpoH
gene_biotype: protein_coding
description:
  RNA polymerase factor sigma-32; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: A2140_10740
symbol: OGI40150.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: A2140_10745
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


