# geneInfo

ensembl_gene_id: c2080
symbol: ydiH
gene_biotype: protein_coding
description:
  Hypothetical protein ydiH; Escherichia coli K-12 ortholog: b1685; Escherichia coli O157:H7 ortholog: z2713.


ensembl_gene_id: c2081
symbol: ydiI
gene_biotype: protein_coding
description:
  Hypothetical protein ydiI; Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA).


ensembl_gene_id: c2082
symbol: ydiJ
gene_biotype: protein_coding
description:
  Hypothetical protein ydiJ; Escherichia coli K-12 ortholog: b1687; Escherichia coli O157:H7 ortholog: z2715.


ensembl_gene_id: c2083
symbol: ydiK
gene_biotype: protein_coding
description:
  Hypothetical protein ydiK; Escherichia coli K-12 ortholog: b1688; Escherichia coli O157:H7 ortholog: z2716.


ensembl_gene_id: c2084
symbol: ydiL
gene_biotype: protein_coding
description:
  Hypothetical protein ydiL; Escherichia coli K-12 ortholog: b1689; Escherichia coli O157:H7 ortholog: z2717.


ensembl_gene_id: c2085
symbol: ydiM
gene_biotype: protein_coding
description:
  Hypothetical transport protein ydiM; Escherichia coli K-12 ortholog: b1690; Escherichia coli O157:H7 ortholog: z2718.


ensembl_gene_id: c2086
symbol: ydiN
gene_biotype: protein_coding
description:
  Hypothetical transport protein ydiN; Escherichia coli K-12 ortholog: b1691; Escherichia coli O157:H7 ortholog: z2719.


ensembl_gene_id: c2087
symbol: ydiB
gene_biotype: protein_coding
description:
  Hypothetical shikimate 5-dehydrogenase-like protein ydiB; The actual biological function of YdiB remains unclear, nor is it known whether 3-dehydroshikimate or quinate represents the natural substrate. Catalyzes the reversible NAD-dependent reduction of both 3-dehydroshikimate (DHSA) and 3-dehydroquinate to yield shikimate (SA) and quinate, respectively. It can use both NAD or NADP for catalysis, however it has higher catalytic efficiency with NAD.


ensembl_gene_id: c2088
symbol: aroD
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family.


ensembl_gene_id: c2089
symbol: ydiF
gene_biotype: protein_coding
description:
  Hypothetical protein ydiF; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.


ensembl_gene_id: c2090
symbol: ydiO
gene_biotype: protein_coding
description:
  Hypothetical protein ydiO; Escherichia coli K-12 ortholog: b1695; Escherichia coli O157:H7 ortholog: z2723; Belongs to the acyl-CoA dehydrogenase family.


ensembl_gene_id: c2091
symbol: ydiP
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ydiP; Escherichia coli K-12 ortholog: b1696; Escherichia coli O157:H7 ortholog: z2724.


ensembl_gene_id: c2093
symbol: ydiQ
gene_biotype: protein_coding
description:
  Putative electron transfer flavoprotein subunit ydiQ; Escherichia coli K-12 ortholog: b1697; Escherichia coli O157:H7 ortholog: z2726.


ensembl_gene_id: c2094
symbol: ydiR
gene_biotype: protein_coding
description:
  Putative electron transfer flavoprotein subunit ydiR; Escherichia coli K-12 ortholog: b1698; Escherichia coli O157:H7 ortholog: z2727.


ensembl_gene_id: c2095
symbol: ydiS
gene_biotype: protein_coding
description:
  Probable electron transfer flavoprotein-quinone oxidoreductase ydiS; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.


ensembl_gene_id: c2097
symbol: ydiD
gene_biotype: protein_coding
description:
  Hypothetical protein ydiD; Escherichia coli K-12 ortholog: b1701; Escherichia coli O157:H7 ortholog: z2730.


ensembl_gene_id: c2098
symbol: ppsA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: c2099
symbol: ydiA
gene_biotype: protein_coding
description:
  Hypothetical protein ydiA; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: c2101
symbol: ydiE
gene_biotype: protein_coding
description:
  Hypothetical protein ydiE; Escherichia coli K-12 ortholog: b1705; Escherichia coli O157:H7 ortholog: z2734.


ensembl_gene_id: c2102
symbol: ydiU
gene_biotype: protein_coding
description:
  Hypothetical protein ydiU; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).


ensembl_gene_id: c2103
symbol: ydiV
gene_biotype: protein_coding
description:
  Hypothetical protein ydiV; Escherichia coli K-12 ortholog: b1707; Escherichia coli O157:H7 ortholog: z2736.


ensembl_gene_id: c2104
symbol: nlpC
gene_biotype: protein_coding
description:
  Probable lipoprotein nlpC precursor; ORF-17; Escherichia coli K-12 ortholog: b1708; Escherichia coli O157:H7 ortholog: z2737.


ensembl_gene_id: c2105
symbol: btuD
gene_biotype: protein_coding
description:
  Vitamin B12 transport ATP-binding protein btuD; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system.


ensembl_gene_id: c2106
symbol: btuE
gene_biotype: protein_coding
description:
  Vitamin B12 transport periplasmic protein btuE; Non-specific peroxidase that can use thioredoxin or glutathione as a reducing agent.


ensembl_gene_id: c2107
symbol: btuC
gene_biotype: protein_coding
description:
  Vitamin B12 transport system permease protein btuC; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Involved in the translocation of the substrate across the membrane (By similarity).


ensembl_gene_id: c2109
symbol: himA
gene_biotype: protein_coding
description:
  Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: c2112
symbol: pheS
gene_biotype: protein_coding
description:
  Phenylalanyl-tRNA synthetase alpha chain; Escherichia coli K-12 ortholog: b1714; Escherichia coli O157:H7 ortholog: z2743; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: c2113
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity).


ensembl_gene_id: c2115
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: c2116
symbol: thrS
gene_biotype: protein_coding
description:
  Threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).


ensembl_gene_id: c2117
symbol: c2117
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 12 to 97 of 121 are 88.37 pct identical to residues 66 to 151 of 157 from MG1655 : b1720.


ensembl_gene_id: c2118
symbol: c2118
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 83 of 103 are 93.97 pct identical to residues 22 to 104 of 471 from MG1655 : b1721.


ensembl_gene_id: c2119
symbol: c2119
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 63 of 63 are 93.54 pct identical to residues 571 to 632 of 632 from GenPept.129 : >gb|AAG56707.1|AE005395_3 (AE005395) Z2749 gene product [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2120
symbol: ydiY
gene_biotype: protein_coding
description:
  Hypothetical protein ydiY precursor; Escherichia coli K-12 ortholog: b1722; Escherichia coli O157:H7 ortholog: z2751.


ensembl_gene_id: c2121
symbol: pfkB
gene_biotype: protein_coding
description:
  6-phosphofructokinase isozyme 2; Escherichia coli K-12 ortholog: b1723; Escherichia coli O157:H7 ortholog: z2752; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: c2123
symbol: ydiZ
gene_biotype: protein_coding
description:
  Hypothetical protein ydiZ; Escherichia coli K-12 ortholog: b1724; Escherichia coli O157:H7 ortholog: z2753.


ensembl_gene_id: c2124
symbol: yniA
gene_biotype: protein_coding
description:
  Hypothetical protein yniA; Escherichia coli K-12 ortholog: b1725; Escherichia coli O157:H7 ortholog: z2754; Belongs to the fructosamine kinase family.


ensembl_gene_id: c2125
symbol: yniB
gene_biotype: protein_coding
description:
  Hypothetical protein yniB; Escherichia coli K-12 ortholog: b1726; Escherichia coli O157:H7 ortholog: z2755.


ensembl_gene_id: c2126
symbol: yniC
gene_biotype: protein_coding
description:
  Hypothetical protein yniC; Escherichia coli K-12 ortholog: b1727; Escherichia coli O157:H7 ortholog: z2756.


ensembl_gene_id: c2127
symbol: ydjM
gene_biotype: protein_coding
description:
  Hypothetical protein ydjM precursor; Escherichia coli K-12 ortholog: b1728; Escherichia coli O157:H7 ortholog: z2757.


ensembl_gene_id: c2128
symbol: ydjN
gene_biotype: protein_coding
description:
  Hypothetical symporter ydjN; Escherichia coli K-12 ortholog: b1729; Escherichia coli O157:H7 ortholog: z2758; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: c2129
symbol: cedA
gene_biotype: protein_coding
description:
  Cell division activator cedA; Activates the cell division inhibited by chromosomal DNA over-replication.


ensembl_gene_id: c2132
symbol: ydjC
gene_biotype: protein_coding
description:
  Hypothetical protein ydjC; Involved in the degradation of chitin. ChbG is essential for growth on the acetylated chitooligosaccharides chitobiose and chitotriose but is dispensable for growth on cellobiose and chitosan dimer, the deacetylated form of chitobiose. Deacetylation of chitobiose-6-P and chitotriose-6-P is necessary for both the activation of the chb promoter by the regulatory protein ChbR and the hydrolysis of phosphorylated beta-glucosides by the phospho-beta-glucosidase ChbF. Catalyzes the removal of only one acetyl group from chitobiose-6-P to yield monoacetylchitobiose-6 [...]


ensembl_gene_id: c2133
symbol: celF
gene_biotype: protein_coding
description:
  6-phospho-beta-glucosidase; Escherichia coli K-12 ortholog: b1734; Escherichia coli O157:H7 ortholog: z2764.


ensembl_gene_id: c2134
symbol: celD
gene_biotype: protein_coding
description:
  Cel operon repressor; Escherichia coli K-12 ortholog: b1735; Escherichia coli O157:H7 ortholog: z2765.


ensembl_gene_id: c2135
symbol: celC
gene_biotype: protein_coding
description:
  PTS system, cellobiose-specific IIA component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II ChbABC PTS system is involved in the transport of the chitin disaccharide N,N'-diacetylchitobiose (GlcNAc2).


ensembl_gene_id: c2136
symbol: celB
gene_biotype: protein_coding
description:
  PTS system, cellobiose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.


ensembl_gene_id: c2137
symbol: celA
gene_biotype: protein_coding
description:
  PTS system, cellobiose-specific IIB component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II ChbABC PTS system is involved in the transport of the chitin disaccharide N,N'-diacetylchitobiose (GlcNAc2).


ensembl_gene_id: c2138
symbol: osmE
gene_biotype: protein_coding
description:
  Osmotically inducible lipoprotein E precursor; Activator of ntr-like gene; Escherichia coli K-12 ortholog: b1739; Escherichia coli O157:H7 ortholog: z2769.


ensembl_gene_id: c2139
symbol: nadE
gene_biotype: protein_coding
description:
  NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.


ensembl_gene_id: c2140
symbol: ydjQ
gene_biotype: protein_coding
description:
  Hypothetical protein ydjQ; Incises the DNA at the 3' side of a lesion during nucleotide excision repair. Incises the DNA farther away from the lesion than UvrC. Not able to incise the 5' site of a lesion. When a lesion remains because UvrC is not able to induce the 3' incision, Cho incises the DNA. Then UvrC makes the 5' incision. The combined action of Cho and UvrC broadens the substrate range of nucleotide excision repair (By similarity).


ensembl_gene_id: c2141
symbol: ydjR
gene_biotype: protein_coding
description:
  Hypothetical protein ydjR; Escherichia coli K-12 ortholog: b1742; Escherichia coli O157:H7 ortholog: z2774; Belongs to the Ves family.


ensembl_gene_id: c2143
symbol: spy
gene_biotype: protein_coding
description:
  Spheroplast protein Y precursor; Escherichia coli K-12 ortholog: b1743; Escherichia coli O157:H7 ortholog: z2775.


ensembl_gene_id: c2144
symbol: ydjS
gene_biotype: protein_coding
description:
  Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.


ensembl_gene_id: c2145
symbol: astB
gene_biotype: protein_coding
description:
  Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).


ensembl_gene_id: c2146
symbol: astD
gene_biotype: protein_coding
description:
  Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.


ensembl_gene_id: c2147
symbol: astA
gene_biotype: protein_coding
description:
  Arginine N-succinyltransferase; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.


ensembl_gene_id: c2148
symbol: cstC
gene_biotype: protein_coding
description:
  Succinylornithine transaminase; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.


ensembl_gene_id: c2150
symbol: xthA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Escherichia coli K-12 ortholog: b1749; Escherichia coli O157:H7 ortholog: z2781.


ensembl_gene_id: c2151
symbol: ydjX
gene_biotype: protein_coding
description:
  Hypothetical protein ydjX; Escherichia coli K-12 ortholog: b1750; Escherichia coli O157:H7 ortholog: z2782.


ensembl_gene_id: c2152
symbol: ydjY
gene_biotype: protein_coding
description:
  Hypothetical protein ydjY precursor; Escherichia coli K-12 ortholog: b1751; Escherichia coli O157:H7 ortholog: z2783.


ensembl_gene_id: c2153
symbol: ydjZ
gene_biotype: protein_coding
description:
  Hypothetical protein ydjZ; Escherichia coli K-12 ortholog: b1752; Escherichia coli O157:H7 ortholog: z2784.


ensembl_gene_id: c2154
symbol: ynjA
gene_biotype: protein_coding
description:
  Hypothetical protein ynjA; Escherichia coli K-12 ortholog: b1753; Escherichia coli O157:H7 ortholog: z2785.


ensembl_gene_id: c2156
symbol: ynjC
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein ynjC; Escherichia coli K-12 ortholog: b1755; Escherichia coli O157:H7 ortholog: z2787.


ensembl_gene_id: c2157
symbol: ynjD
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein ynjD; Escherichia coli K-12 ortholog: b1756; Escherichia coli O157:H7 ortholog: z2788.


ensembl_gene_id: c2158
symbol: c2158
gene_biotype: protein_coding
description:
  Putative thiosulfate sulfurtransferase ynjE precursor; Escherichia coli K-12 ortholog: b1757; Escherichia coli O157:H7 ortholog: z2789.


ensembl_gene_id: c2159
symbol: ynjF
gene_biotype: protein_coding
description:
  Hypothetical protein ynjF; Escherichia coli K-12 ortholog: b1758; Escherichia coli O157:H7 ortholog: z2790; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: c2160
symbol: c2160
gene_biotype: protein_coding
description:
  CTP pyrophosphohydrolase; Escherichia coli K-12 ortholog: b1759; Escherichia coli O157:H7 ortholog: z2791; Belongs to the Nudix hydrolase family.


ensembl_gene_id: c2161
symbol: ynjH
gene_biotype: protein_coding
description:
  Hypothetical protein ynjH precursor; Escherichia coli K-12 ortholog: b1760; Escherichia coli O157:H7 ortholog: z2792.


ensembl_gene_id: c2162
symbol: gdhA
gene_biotype: protein_coding
description:
  NADP-specific glutamate dehydrogenase; Escherichia coli K-12 ortholog: b1761; Escherichia coli O157:H7 ortholog: z2793; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: c2163
symbol: c2163
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 319 to 628 of 647 are 30.22 pct identical to residues 22 to 328 of 331 from GenPept.129 : >gb|AAL19605.1| (AE008726) putative TPR repeat protein [Salmonella typhimurium LT2].


ensembl_gene_id: c2164
symbol: ybeW
gene_biotype: protein_coding
description:
  Chaperone protein hscC; Hsc62; Escherichia coli K-12 ortholog: b0650; Escherichia coli O157:H7 ortholog: z0800; Belongs to the heat shock protein 70 family.


ensembl_gene_id: c2166
symbol: topB
gene_biotype: protein_coding
description:
  DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...]


ensembl_gene_id: c2172
symbol: ydjB
gene_biotype: protein_coding
description:
  Pyrazinamidase/nicotinamidase; Escherichia coli K-12 ortholog: b1768; Escherichia coli O157:H7 ortholog: z2802; bifunctional; Pyrazinamidase; Nicotinamidase.


ensembl_gene_id: c2173
symbol: ydjE
gene_biotype: protein_coding
description:
  Hypothetical metabolite transport protein ydjE; Escherichia coli K-12 ortholog: b1769; Escherichia coli O157:H7 ortholog: z2803.


ensembl_gene_id: c2174
symbol: ydjF
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ydjF; Escherichia coli K-12 ortholog: b1770; Escherichia coli O157:H7 ortholog: z2808.


ensembl_gene_id: c2175
symbol: ydjG
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ydjG; Escherichia coli K-12 ortholog: b1771; Escherichia coli O157:H7 ortholog: z2809.


ensembl_gene_id: c2176
symbol: ydjH
gene_biotype: protein_coding
description:
  Hypothetical sugar kinase ydjH; Escherichia coli K-12 ortholog: b1772; Escherichia coli O157:H7 ortholog: z2810; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: c2177
symbol: ydjI
gene_biotype: protein_coding
description:
  Hypothetical protein ydjI; Escherichia coli K-12 ortholog: b1773; Escherichia coli O157:H7 ortholog: z2811.


ensembl_gene_id: c2178
symbol: ydjJ
gene_biotype: protein_coding
description:
  Hypothetical zinc-type alcohol dehydrogenase-like protein ydjJ; Escherichia coli K-12 ortholog: b1774; Escherichia coli O157:H7 ortholog: z2812.


ensembl_gene_id: c2179
symbol: ydjK
gene_biotype: protein_coding
description:
  Hypothetical metabolite transport protein ydjK; Escherichia coli K-12 ortholog: b1775; Escherichia coli O157:H7 ortholog: z2813.


ensembl_gene_id: c2181
symbol: ydjL
gene_biotype: protein_coding
description:
  Hypothetical zinc-type alcohol dehydrogenase-like protein ydjL; Escherichia coli K-12 ortholog: b1776; Escherichia coli O157:H7 ortholog: z2815.


ensembl_gene_id: c2182
symbol: yeaC
gene_biotype: protein_coding
description:
  Hypothetical protein yeaC; Escherichia coli K-12 ortholog: b1777; Escherichia coli O157:H7 ortholog: z2816.


ensembl_gene_id: c2183
symbol: yeaA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase msrB; Escherichia coli K-12 ortholog: b1778; Escherichia coli O157:H7 ortholog: z2817; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: c2184
symbol: gapA
gene_biotype: protein_coding
description:
  Glyceraldehyde 3-phosphate dehydrogenase A; Catalyzes the oxidative phosphorylation of glyceraldehyde 3- phosphate (G3P) to 1,3-bisphosphoglycerate (BPG) using the cofactor NAD. The first reaction step involves the formation of a hemiacetal intermediate between G3P and a cysteine residue, and this hemiacetal intermediate is then oxidized to a thioester, with concomitant reduction of NAD to NADH. The reduced NADH is then exchanged with the second NAD, and the thioester is attacked by a nucleophilic inorganic phosphate to produce BPG.


ensembl_gene_id: c2185
symbol: yeaD
gene_biotype: protein_coding
description:
  Unknown protein from 2D-page; Spots T26/PR37; Escherichia coli K-12 ortholog: b1780; Escherichia coli O157:H7 ortholog: z2820; Belongs to the glucose-6-phosphate 1-epimerase family.


ensembl_gene_id: c2186
symbol: yeaE
gene_biotype: protein_coding
description:
  Hypothetical protein yeaE; Escherichia coli K-12 ortholog: b1781; Escherichia coli O157:H7 ortholog: z2821.


ensembl_gene_id: c2187
symbol: yeaF
gene_biotype: protein_coding
description:
  MltA-interacting protein precursor; Escherichia coli K-12 ortholog: b1782; Escherichia coli O157:H7 ortholog: z2822.


ensembl_gene_id: c2188
symbol: yeaG
gene_biotype: protein_coding
description:
  Hypothetical protein yeaG; Escherichia coli K-12 ortholog: b1783; Escherichia coli O157:H7 ortholog: z2823; Belongs to the PrkA family.


ensembl_gene_id: c2189
symbol: yeaH
gene_biotype: protein_coding
description:
  Hypothetical protein yeaH; Escherichia coli K-12 ortholog: b1784; Escherichia coli O157:H7 ortholog: z2824; Belongs to the UPF0229 family.


ensembl_gene_id: c2190
symbol: yeaI
gene_biotype: protein_coding
description:
  Hypothetical protein yeaI; Escherichia coli K-12 ortholog: b1785; Escherichia coli O157:H7 ortholog: z2825.


ensembl_gene_id: c2191
symbol: yeaJ
gene_biotype: protein_coding
description:
  Hypothetical protein yeaJ; Escherichia coli K-12 ortholog: b1786; Escherichia coli O157:H7 ortholog: z2826.


ensembl_gene_id: c2192
symbol: yeaK
gene_biotype: protein_coding
description:
  Hypothetical protein yeaK; Escherichia coli K-12 ortholog: b1787; Escherichia coli O157:H7 ortholog: z2827.


ensembl_gene_id: c2193
symbol: yoaI
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Escherichia coli K-12 ortholog: b1788; Escherichia coli O157:H7 ortholog: z2828.


ensembl_gene_id: c2194
symbol: yeaL
gene_biotype: protein_coding
description:
  Hypothetical protein yeaL; Escherichia coli K-12 ortholog: b1789; Escherichia coli O157:H7 ortholog: z2829.


ensembl_gene_id: c2195
symbol: yeaM
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yeaM; Escherichia coli K-12 ortholog: b1790; Escherichia coli O157:H7 ortholog: z2831.


ensembl_gene_id: c2196
symbol: yeaN
gene_biotype: protein_coding
description:
  Hypothetical transport protein yeaN; Escherichia coli K-12 ortholog: b1791; Escherichia coli O157:H7 ortholog: z2833.


ensembl_gene_id: c2197
symbol: yeaO
gene_biotype: protein_coding
description:
  Hypothetical protein yeaO; Escherichia coli K-12 ortholog: b1792; Escherichia coli O157:H7 ortholog: z2834.


ensembl_gene_id: c2198
symbol: yoaF
gene_biotype: protein_coding
description:
  Hypothetical protein yoaF; Escherichia coli K-12 ortholog: b1793; Escherichia coli O157:H7 ortholog: z2835.


ensembl_gene_id: c2199
symbol: yeaP
gene_biotype: protein_coding
description:
  Hypothetical protein yeaP; Escherichia coli K-12 ortholog: b1794; Escherichia coli O157:H7 ortholog: z2836.


ensembl_gene_id: c2200
symbol: yeaQ
gene_biotype: protein_coding
description:
  Hypothetical protein yeaQ; Escherichia coli K-12 ortholog: b1795; Escherichia coli O157:H7 ortholog: z2837.


ensembl_gene_id: c2202
symbol: yoaG
gene_biotype: protein_coding
description:
  Hypothetical protein yoaG; Escherichia coli K-12 ortholog: b1796; Escherichia coli O157:H7 ortholog: z2838.


ensembl_gene_id: c2204
symbol: yeaR
gene_biotype: protein_coding
description:
  Hypothetical protein yeaR; Escherichia coli K-12 ortholog: b1797; Escherichia coli O157:H7 ortholog: z2839.


ensembl_gene_id: c2206
symbol: c2206
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 56 to 110 of 110 are 94.54 pct identical to residues 260 to 314 of 314 from GenPept.129 : >gb|AAG56788.1|AE005402_14 (AE005402) putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2207
symbol: c2207
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 56 of 56 are 92.30 pct identical to residues 121 to 172 of 361 from GenPept.129 : >gb|AAG56789.1|AE005402_15 (AE005402) putative tartrate dehydrogenase [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2208
symbol: rnd
gene_biotype: protein_coding
description:
  Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.


ensembl_gene_id: c2209
symbol: fadD
gene_biotype: protein_coding
description:
  Long-chain-fatty-acid--CoA ligase; Catalyzes the esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids.


ensembl_gene_id: c2210
symbol: yeaY
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yeaY precursor; Escherichia coli K-12 ortholog: b1806; Escherichia coli O157:H7 ortholog: z2849.


ensembl_gene_id: c2211
symbol: yeaZ
gene_biotype: protein_coding
description:
  Hypothetical protease yeaZ; Escherichia coli K-12 ortholog: b1807; Escherichia coli O157:H7 ortholog: z2850.


ensembl_gene_id: c2212
symbol: c2212
gene_biotype: protein_coding
description:
  Probable ATP-dependent helicase yoaA; Escherichia coli K-12 ortholog: b1808; Escherichia coli O157:H7 ortholog: z2851.


ensembl_gene_id: c2213
symbol: yoaB
gene_biotype: protein_coding
description:
  Hypothetical protein yoaB; Escherichia coli K-12 ortholog: b1809; Escherichia coli O157:H7 ortholog: z2852; Belongs to the RutC family.


ensembl_gene_id: c2214
symbol: yoaC
gene_biotype: protein_coding
description:
  Hypothetical protein yoaC; Escherichia coli K-12 ortholog: b1810; Escherichia coli O157:H7 ortholog: z2853.


ensembl_gene_id: c2216
symbol: yoaH
gene_biotype: protein_coding
description:
  Hypothetical protein yoaH; Escherichia coli K-12 ortholog: b1811; Escherichia coli O157:H7 ortholog: z2854; Belongs to the UPF0181 family.


ensembl_gene_id: c2217
symbol: pabB
gene_biotype: protein_coding
description:
  Para-aminobenzoate synthase component I; Escherichia coli K-12 ortholog: b1812; Escherichia coli O157:H7 ortholog: z2855.


ensembl_gene_id: c2218
symbol: yeaB
gene_biotype: protein_coding
description:
  Hypothetical protein yeaB; Probably mediates the hydrolysis of some nucleoside diphosphate derivatives; Belongs to the Nudix hydrolase family. PCD1 subfamily.


ensembl_gene_id: c2219
symbol: sdaA
gene_biotype: protein_coding
description:
  L-serine dehydratase 1; Escherichia coli K-12 ortholog: b1814; Escherichia coli O157:H7 ortholog: z2857; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: c2221
symbol: yoaD
gene_biotype: protein_coding
description:
  Hypothetical protein yoaD; Escherichia coli K-12 ortholog: b1815; Escherichia coli O157:H7 ortholog: z2858.


ensembl_gene_id: c2222
symbol: yoaE
gene_biotype: protein_coding
description:
  Hypothetical protein yoaE; Escherichia coli K-12 ortholog: b1816; Escherichia coli O157:H7 ortholog: z2859.


ensembl_gene_id: c2223
symbol: manX
gene_biotype: protein_coding
description:
  PTS system, mannose-specific IIAB component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II ManXYZ PTS system is involved in mannose transport. Also functions as a receptor for bacterial chemotaxis and is required for infection of the cell by bacteriophage lambda where it most likely functions as a pore for penetration of lambda DNA.


ensembl_gene_id: c2224
symbol: manY
gene_biotype: protein_coding
description:
  PTS system, mannose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II ManXYZ PTS system is involved in mannose transport. Also functions as a receptor for bacterial chemotaxis and is required for infection of the cell by bacteriophage lambda where it most likely functions as a pore for penetration of lambda DNA.


ensembl_gene_id: c2226
symbol: manZ
gene_biotype: protein_coding
description:
  PTS system, mannose-specific IID component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II ManXYZ PTS system is involved in mannose transport. Also functions as a receptor for bacterial chemotaxis and is required for infection of the cell by bacteriophage lambda where it most likely functions as a pore for penetration of lambda DNA.


ensembl_gene_id: c2227
symbol: yobD
gene_biotype: protein_coding
description:
  Hypothetical protein yobD; Escherichia coli K-12 ortholog: b1820; Escherichia coli O157:H7 ortholog: z2863.


ensembl_gene_id: c2228
symbol: yebN
gene_biotype: protein_coding
description:
  Hypothetical protein yebN; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.


ensembl_gene_id: c2229
symbol: yebH
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase A; Escherichia coli K-12 ortholog: b1822; Escherichia coli O157:H7 ortholog: z2866.


ensembl_gene_id: c2231
symbol: cspC
gene_biotype: protein_coding
description:
  Cold shock-like protein cspC; CSP-C; Escherichia coli K-12 ortholog: b1823; Escherichia coli O157:H7 ortholog: z2868.


ensembl_gene_id: c2232
symbol: yobF
gene_biotype: protein_coding
description:
  Hypothetical protein yobF; Escherichia coli K-12 ortholog: b1824; Escherichia coli O157:H7 ortholog: z2869; Belongs to the YobF/DUF2527 family.


ensembl_gene_id: c2233
symbol: yebO
gene_biotype: protein_coding
description:
  Hypothetical protein yebO; Escherichia coli K-12 ortholog: b1825; Escherichia coli O157:H7 ortholog: z2871.


ensembl_gene_id: c2234
symbol: yobG
gene_biotype: protein_coding
description:
  Hypothetical protein yobG; PhoP-regulated transcription is redox-sensitive, being activated when the periplasm becomes more reducing. MgrB acts between DsbA/DsbB and PhoP/PhoQ in this pathway. Represses PhoP/PhoQ signaling, possibly by binding to the periplasmic domain of PhoQ, altering its activity and that of downstream effector PhoP.


ensembl_gene_id: c2236
symbol: c2236
gene_biotype: protein_coding
description:
  Transcriptional regulator kdgR; Escherichia coli K-12 ortholog: b1827; Escherichia coli O157:H7 ortholog: z2874.


ensembl_gene_id: c2237
symbol: yebQ
gene_biotype: protein_coding
description:
  Hypothetical transport protein yebQ; Escherichia coli K-12 ortholog: b1828; Escherichia coli O157:H7 ortholog: z2875.


ensembl_gene_id: c2238
symbol: htpX
gene_biotype: protein_coding
description:
  Probable protease htpX; Escherichia coli K-12 ortholog: b1829; Escherichia coli O157:H7 ortholog: z2876; Belongs to the peptidase M48B family.


ensembl_gene_id: c2239
symbol: prc
gene_biotype: protein_coding
description:
  Tail-specific protease precursor; Escherichia coli K-12 ortholog: b1830; Escherichia coli O157:H7 ortholog: z2877; Belongs to the peptidase S41A family.


ensembl_gene_id: c2240
symbol: proQ
gene_biotype: protein_coding
description:
  ProQ protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism. Belongs to the ProQ family.


ensembl_gene_id: c2242
symbol: yebS
gene_biotype: protein_coding
description:
  Hypothetical protein yebS; Escherichia coli K-12 ortholog: b1833; Escherichia coli O157:H7 ortholog: z2880.


ensembl_gene_id: c2243
symbol: yebT
gene_biotype: protein_coding
description:
  Hypothetical protein yebT; Escherichia coli K-12 ortholog: b1834; Escherichia coli O157:H7 ortholog: z2881.


ensembl_gene_id: c2244
symbol: yebU
gene_biotype: protein_coding
description:
  Hypothetical protein yebU; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.


ensembl_gene_id: c2245
symbol: yebV
gene_biotype: protein_coding
description:
  Hypothetical protein yebV; Escherichia coli K-12 ortholog: b1836; Escherichia coli O157:H7 ortholog: z2883.


ensembl_gene_id: c2246
symbol: yebW
gene_biotype: protein_coding
description:
  Hypothetical protein yebW; Escherichia coli K-12 ortholog: b1837; Escherichia coli O157:H7 ortholog: z2884.


ensembl_gene_id: c2247
symbol: pphA
gene_biotype: protein_coding
description:
  Serine/threonine protein phosphatase 1; Escherichia coli K-12 ortholog: b1838; Escherichia coli O157:H7 ortholog: z2885.


ensembl_gene_id: c2249
symbol: yebY
gene_biotype: protein_coding
description:
  Hypothetical protein yebY precursor; Escherichia coli K-12 ortholog: b1839; Escherichia coli O157:H7 ortholog: z2887.


ensembl_gene_id: c2250
symbol: yebZ
gene_biotype: protein_coding
description:
  Hypothetical protein yebZ; Escherichia coli K-12 ortholog: b1840; Escherichia coli O157:H7 ortholog: z2888.


ensembl_gene_id: c2251
symbol: yobA
gene_biotype: protein_coding
description:
  Protein yobA precursor; Escherichia coli K-12 ortholog: b1841; Escherichia coli O157:H7 ortholog: z2889.


ensembl_gene_id: c2252
symbol: holE
gene_biotype: protein_coding
description:
  DNA polymerase III, theta subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity (By similarity).


ensembl_gene_id: c2253
symbol: yobB
gene_biotype: protein_coding
description:
  Hypothetical protein yobB; Escherichia coli K-12 ortholog: b1843; Escherichia coli O157:H7 ortholog: z2893.


ensembl_gene_id: c2254
symbol: exoX
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease X; Capable of degrading both single-strand and double-strand DNA with 3' to 5' polarity. Has higher affinity for ssDNA ends than for dsDNA (By similarity).


ensembl_gene_id: c2255
symbol: c2255
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 131 of 131 are 96.94 pct identical to residues 556 to 686 of 686 from GenPept.129 : >gb|AAC74915.1| (AE000278) protease II [Escherichia coli K12].


ensembl_gene_id: c2258
symbol: yebE
gene_biotype: protein_coding
description:
  Hypothetical protein yebE; Escherichia coli K-12 ortholog: b1846; Escherichia coli O157:H7 ortholog: z2897.


ensembl_gene_id: c2259
symbol: yebF
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yebF precursor; Escherichia coli K-12 ortholog: b1847; Escherichia coli O157:H7 ortholog: z2899.


ensembl_gene_id: c2260
symbol: yebG
gene_biotype: protein_coding
description:
  Hypothetical protein yebG; Escherichia coli K-12 ortholog: b1848; Escherichia coli O157:H7 ortholog: z2900.


ensembl_gene_id: c2263
symbol: eda
gene_biotype: protein_coding
description:
  KHG/KDPG aldolase; Escherichia coli K-12 ortholog: b1850; Escherichia coli O157:H7 ortholog: z2902; bifunctional; 4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase.


ensembl_gene_id: c2264
symbol: edd
gene_biotype: protein_coding
description:
  Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.


ensembl_gene_id: c2265
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: c2267
symbol: yebK
gene_biotype: protein_coding
description:
  Hex regulon repressor; Escherichia coli K-12 ortholog: b1853; Escherichia coli O157:H7 ortholog: z2905.


ensembl_gene_id: c2268
symbol: pykA
gene_biotype: protein_coding
description:
  Pyruvate kinase II; Escherichia coli K-12 ortholog: b1854; Escherichia coli O157:H7 ortholog: z2906; Belongs to the pyruvate kinase family.


ensembl_gene_id: c2269
symbol: msbB
gene_biotype: protein_coding
description:
  Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A.


ensembl_gene_id: c2270
symbol: yebA
gene_biotype: protein_coding
description:
  Hypothetical protein yebA precursor; A murein DD-endopeptidase with specificity for D-Ala-meso- diaminopimelic acid (mDAP) cross-links. Its role is probably to cleave D-Ala-mDAP cross-links to allow insertion of new glycans and thus cell wall expansion. Functionally redundant with MepM and MepH (By similarity); Belongs to the peptidase M23B family.


ensembl_gene_id: c2271
symbol: yebL
gene_biotype: protein_coding
description:
  High-affinity zinc uptake system protein znuA precursor; Escherichia coli K-12 ortholog: b1857; Escherichia coli O157:H7 ortholog: z2909; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: c2272
symbol: yebM
gene_biotype: protein_coding
description:
  High-affinity zinc uptake system ATP-binding protein znuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.


ensembl_gene_id: c2273
symbol: yebI
gene_biotype: protein_coding
description:
  High-affinity zinc uptake system membrane protein znuB; Escherichia coli K-12 ortholog: b1859; Escherichia coli O157:H7 ortholog: z2911.


ensembl_gene_id: c2274
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: c2275
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: c2276
symbol: yebB
gene_biotype: protein_coding
description:
  Hypothetical protein yebB; Escherichia coli K-12 ortholog: b1862; Escherichia coli O157:H7 ortholog: z2914.


ensembl_gene_id: c2277
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group (By similarity).


ensembl_gene_id: c2279
symbol: ntpA
gene_biotype: protein_coding
description:
  dATP pyrophosphohydrolase; Escherichia coli K-12 ortholog: b1865; Escherichia coli O157:H7 ortholog: z2917.


ensembl_gene_id: c2280
symbol: aspS
gene_biotype: protein_coding
description:
  Aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: c2281
symbol: yecD
gene_biotype: protein_coding
description:
  Hypothetical isochorismatase family protein yecD; Escherichia coli K-12 ortholog: b1867; Escherichia coli O157:H7 ortholog: z2920.


ensembl_gene_id: c2282
symbol: yecE
gene_biotype: protein_coding
description:
  Hypothetical protein yecE; Escherichia coli K-12 ortholog: b1868; Escherichia coli O157:H7 ortholog: z2921.


ensembl_gene_id: c2283
symbol: yecN
gene_biotype: protein_coding
description:
  Hypothetical protein yecN; Escherichia coli K-12 ortholog: b1869; Escherichia coli O157:H7 ortholog: z2922.


ensembl_gene_id: c2284
symbol: yecO
gene_biotype: protein_coding
description:
  Protein yecO; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).


ensembl_gene_id: c2285
symbol: yecP
gene_biotype: protein_coding
description:
  Hypothetical protein yecP; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.


ensembl_gene_id: c2286
symbol: bisZ
gene_biotype: protein_coding
description:
  Trimethylamine-N-oxide reductase 2 precursor; Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions. Can also reduce other N- and S-oxide compounds such as 4-methylmorpholine-N- oxide and biotin sulfoxide (BSO), but with a lower catalytic efficiency (By similarity); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: c2287
symbol: yecK
gene_biotype: protein_coding
description:
  Cytochrome c-type protein torY; Escherichia coli K-12 ortholog: b1873; Escherichia coli O157:H7 ortholog: z2926; Belongs to the TorC/TorY family.


ensembl_gene_id: c2291
symbol: argS
gene_biotype: protein_coding
description:
  Arginyl-tRNA synthetase; Escherichia coli K-12 ortholog: b1876; Escherichia coli O157:H7 ortholog: z2929.


ensembl_gene_id: c2292
symbol: flhE
gene_biotype: protein_coding
description:
  Flagellar protein flhE precursor; Escherichia coli K-12 ortholog: b1878; Escherichia coli O157:H7 ortholog: z2931.


ensembl_gene_id: c2293
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein flhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: c2294
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein flhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: c2296
symbol: cheZ
gene_biotype: protein_coding
description:
  Chemotaxis protein cheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).


ensembl_gene_id: c2297
symbol: cheY
gene_biotype: protein_coding
description:
  Chemotaxis protein cheY; Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. In its active (phosphorylated or acetylated) form, CheY exhibits enhanced binding to a switch component, FliM, at the flagellar motor which induces a change from counterclockwise to clockwise flagellar rotation (By similarity).


ensembl_gene_id: c2298
symbol: cheB
gene_biotype: protein_coding
description:
  Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: c2299
symbol: cheR
gene_biotype: protein_coding
description:
  Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.


ensembl_gene_id: c2300
symbol: c2300
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 34 of 40 are 93.93 pct identical to residues 1 to 33 of 535 from GenPept.129 : >gb|AAA23567.1| (M13463) sensory transducer protein [Escherichia coli].


ensembl_gene_id: c2301
symbol: tar
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis protein II; MCP-II; Escherichia coli K-12 ortholog: b1886; Escherichia coli O157:H7 ortholog: z2940.


ensembl_gene_id: c2302
symbol: cheW
gene_biotype: protein_coding
description:
  Chemotaxis protein cheW; Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. It physically bridges CheA to the MCPs (methyl-accepting chemotaxis proteins) to allow regulated phosphotransfer to CheY and CheB (By similarity).


ensembl_gene_id: c2303
symbol: cheA
gene_biotype: protein_coding
description:
  Chemotaxis protein cheA; Escherichia coli K-12 ortholog: b1888; Escherichia coli O157:H7 ortholog: z2942.


ensembl_gene_id: c2304
symbol: motB
gene_biotype: protein_coding
description:
  Chemotaxis motB protein; Motility protein B; Escherichia coli K-12 ortholog: b1889; Escherichia coli O157:H7 ortholog: z2943.


ensembl_gene_id: c2305
symbol: motA
gene_biotype: protein_coding
description:
  Chemotaxis motA protein; Motility protein A; Escherichia coli K-12 ortholog: b1890; Escherichia coli O157:H7 ortholog: z2944.


ensembl_gene_id: c2306
symbol: flhC
gene_biotype: protein_coding
description:
  Flagellar transcriptional activator flhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family.


ensembl_gene_id: c2308
symbol: flhD
gene_biotype: protein_coding
description:
  Flagellar transcriptional activator flhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family.


ensembl_gene_id: c2309
symbol: yecG
gene_biotype: protein_coding
description:
  Hypothetical protein yecG; Required for resistance to DNA-damaging agents. Belongs to the universal stress protein A family.


ensembl_gene_id: c2310
symbol: otsA
gene_biotype: protein_coding
description:
  Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.


ensembl_gene_id: c2312
symbol: araH
gene_biotype: protein_coding
description:
  High-affinity L-arabinose transport system; Escherichia coli K-12 ortholog: b1899; Escherichia coli O157:H7 ortholog: z2951; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: c2313
symbol: araG
gene_biotype: protein_coding
description:
  L-arabinose transport ATP-binding protein araG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.


ensembl_gene_id: c2314
symbol: araF
gene_biotype: protein_coding
description:
  L-arabinose-binding periplasmic protein precursor; ABP; Escherichia coli K-12 ortholog: b1901; Escherichia coli O157:H7 ortholog: z2954.


ensembl_gene_id: c2315
symbol: yecI
gene_biotype: protein_coding
description:
  Ferritin-like protein 2; Escherichia coli K-12 ortholog: b1902; Escherichia coli O157:H7 ortholog: z2956.


ensembl_gene_id: c2316
symbol: yecJ
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 83 of 83 are 100.00 pct identical to residues 1 to 83 of 83 from SwissProt.40 : >sp|P52092|YECJ_ECOLI Hypothetical protein yecJ.


ensembl_gene_id: c2319
symbol: yecR
gene_biotype: protein_coding
description:
  Hypothetical protein yecR; Escherichia coli K-12 ortholog: b1904; Escherichia coli O157:H7 ortholog: z2959.


ensembl_gene_id: c2322
symbol: yecH
gene_biotype: protein_coding
description:
  Hypothetical protein yecH; Escherichia coli K-12 ortholog: b1906; Escherichia coli O157:H7 ortholog: z2962.


ensembl_gene_id: c2323
symbol: tyrP
gene_biotype: protein_coding
description:
  Tyrosine-specific transport protein; Tyrosine permease; Escherichia coli K-12 ortholog: b1907; Escherichia coli O157:H7 ortholog: z2963.


ensembl_gene_id: c2324
symbol: yecA
gene_biotype: protein_coding
description:
  Hypothetical protein yecA; Escherichia coli K-12 ortholog: b1908; Escherichia coli O157:H7 ortholog: z2964; Belongs to the UPF0149 family.


ensembl_gene_id: c2325
symbol: pgsA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; This protein catalyzes the committed step to the synthesis of the acidic phospholipids; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: c2326
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision (By similarity).


ensembl_gene_id: c2327
symbol: uvrY
gene_biotype: protein_coding
description:
  UvrY protein; Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. UvrY activates the transcription of the untranslated csrB RNA and of barA, in an autoregulatory loop. Mediates the effects of CsrA on csrB RNA by BarA-dependent and BarA-independent mechanisms (By similarity).


ensembl_gene_id: c2329
symbol: yecF
gene_biotype: protein_coding
description:
  Hypothetical protein yecF; Escherichia coli K-12 ortholog: b1915; Escherichia coli O157:H7 ortholog: z3003.


ensembl_gene_id: c2330
symbol: sdiA
gene_biotype: protein_coding
description:
  Regulatory protein sdiA; Escherichia coli K-12 ortholog: b1916; Escherichia coli O157:H7 ortholog: z3004.


ensembl_gene_id: c2331
symbol: yecC
gene_biotype: protein_coding
description:
  Hypothetical amino-acid ABC transporter ATP-binding protein yecC; Escherichia coli K-12 ortholog: b1917; Escherichia coli O157:H7 ortholog: z3005.


ensembl_gene_id: c2332
symbol: yecS
gene_biotype: protein_coding
description:
  Hypothetical amino-acid ABC transporter permease protein yecS; Part of the ABC transporter complex FliY-YecC-YecS involved in L-cystine transport. Probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: c2333
symbol: yedO
gene_biotype: protein_coding
description:
  Putative 1-aminocyclopropane-1-carboxylate deaminase; Catalyzes the alpha,beta-elimination reaction of D-cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine; Belongs to the ACC deaminase/D-cysteine desulfhydrase family.


ensembl_gene_id: c2335
symbol: fliY
gene_biotype: protein_coding
description:
  Cystine-binding periplasmic protein precursor; Part of the ABC transporter complex FliY-YecC-YecS involved in L-cystine transport. Binds cystine.


ensembl_gene_id: c2337
symbol: fliA
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.


ensembl_gene_id: c2338
symbol: fliC
gene_biotype: protein_coding
description:
  Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: c2339
symbol: fliD
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: c2340
symbol: fliS
gene_biotype: protein_coding
description:
  Flagellar protein fliS; Escherichia coli K-12 ortholog: b1925; Escherichia coli O157:H7 ortholog: z3015.


ensembl_gene_id: c2341
symbol: fliT
gene_biotype: protein_coding
description:
  Flagellar protein fliT; Dual-function protein that regulates the transcription of class 2 flagellar operons and that also acts as an export chaperone for the filament-capping protein FliD. As a transcriptional regulator, acts as an anti-FlhDC factor; it directly binds FlhC, thus inhibiting the binding of the FlhC/FlhD complex to class 2 promoters, resulting in decreased expression of class 2 flagellar operons. As a chaperone, effects FliD transition to the membrane by preventing its premature polymerization, and by directing it to the export apparatus.


ensembl_gene_id: c2342
symbol: amyA
gene_biotype: protein_coding
description:
  Cytoplasmic alpha-amylase; Escherichia coli K-12 ortholog: b1927; Escherichia coli O157:H7 ortholog: z3017.


ensembl_gene_id: c2343
symbol: yedD
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yedD precursor; Escherichia coli K-12 ortholog: b1928; Escherichia coli O157:H7 ortholog: z3018.


ensembl_gene_id: c2344
symbol: yedE
gene_biotype: protein_coding
description:
  Hypothetical protein yedE; Escherichia coli K-12 ortholog: b1929; Escherichia coli O157:H7 ortholog: z3019.


ensembl_gene_id: c2345
symbol: yedF
gene_biotype: protein_coding
description:
  Hypothetical protein yedF; Escherichia coli K-12 ortholog: b1930; Escherichia coli O157:H7 ortholog: z3020; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: c2346
symbol: yedK
gene_biotype: protein_coding
description:
  Hypothetical protein yedK; Escherichia coli K-12 ortholog: b1931; Escherichia coli O157:H7 ortholog: z3021; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: c2350
symbol: ybcL
gene_biotype: protein_coding
description:
  Protein ybcL precursor; Escherichia coli K-12 ortholog: b0545; Escherichia coli O157:H7 ortholog: z0992.


ensembl_gene_id: c2352
symbol: emrE
gene_biotype: protein_coding
description:
  EmrE protein; Methyl viologen resistance protein C; Escherichia coli K-12 ortholog: b0543; Escherichia coli O157:H7 ortholog: z1870.


ensembl_gene_id: c2353
symbol: fliE
gene_biotype: protein_coding
description:
  Flagellar hook-basal body complex protein fliE; Escherichia coli K-12 ortholog: b1937; Escherichia coli O157:H7 ortholog: z3027.


ensembl_gene_id: c2354
symbol: fliF
gene_biotype: protein_coding
description:
  Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: c2355
symbol: fliG
gene_biotype: protein_coding
description:
  Flagellar motor switch protein fliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation (By similarity).


ensembl_gene_id: c2357
symbol: fliH
gene_biotype: protein_coding
description:
  Flagellar assembly protein fliH; Escherichia coli K-12 ortholog: b1940; Escherichia coli O157:H7 ortholog: z3030.


ensembl_gene_id: c2358
symbol: fliI
gene_biotype: protein_coding
description:
  Flagellum-specific ATP synthase; Escherichia coli K-12 ortholog: b1941; Escherichia coli O157:H7 ortholog: z3031.


ensembl_gene_id: c2359
symbol: fliJ
gene_biotype: protein_coding
description:
  Flagellar fliJ protein; Flagellar protein that affects chemotactic events. Belongs to the FliJ family.


ensembl_gene_id: c2360
symbol: fliK
gene_biotype: protein_coding
description:
  Flagellar hook-length control protein; Escherichia coli K-12 ortholog: b1943; Escherichia coli O157:H7 ortholog: z3033.


ensembl_gene_id: c2361
symbol: fliL
gene_biotype: protein_coding
description:
  Flagellar fliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: c2362
symbol: fliM
gene_biotype: protein_coding
description:
  Flagellar motor switch protein fliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: c2363
symbol: fliN
gene_biotype: protein_coding
description:
  Flagellar motor switch protein fliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.


ensembl_gene_id: c2364
symbol: fliO
gene_biotype: protein_coding
description:
  Flagellar protein fliO; Escherichia coli K-12 ortholog: b1947; Escherichia coli O157:H7 ortholog: z3037.


ensembl_gene_id: c2365
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein fliP precursor; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: c2366
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein fliQ; Required for the assembly of the rivet at the earliest stage of flagellar biosynthesis; Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: c2367
symbol: fliR
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein fliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: c2369
symbol: rcsA
gene_biotype: protein_coding
description:
  Colanic acid capsular biosynthesis activation protein A; Component of the Rcs signaling system, which controls transcription of numerous genes. Binds, with RcsB, to the RcsAB box to regulate expression of genes.


ensembl_gene_id: c2370
symbol: dsrB
gene_biotype: protein_coding
description:
  DsrB protein; Escherichia coli K-12 ortholog: b1952; Escherichia coli O157:H7 ortholog: z3042; Belongs to the DsrB family.


ensembl_gene_id: c2372
symbol: yodD
gene_biotype: protein_coding
description:
  Hypothetical protein yodD; Escherichia coli K-12 ortholog: b1953; Escherichia coli O157:H7 ortholog: z3043.


ensembl_gene_id: c2373
symbol: yedP
gene_biotype: protein_coding
description:
  Hypothetical protein yedP; Escherichia coli K-12 ortholog: b1955; Escherichia coli O157:H7 ortholog: z3045.


ensembl_gene_id: c2374
symbol: yedQ
gene_biotype: protein_coding
description:
  Hypothetical protein yedQ; Catalyzes the synthesis of cyclic-di-GMP (c-di-GMP) via the condensation of 2 GTP molecules (By similarity). Cyclic-di-GMP is a second messenger which controls cell surface-associated traits in bacteria. Involved in the regulation of cellulose production (By similarity).


ensembl_gene_id: c2376
symbol: yodC
gene_biotype: protein_coding
description:
  Hypothetical protein yodC; Escherichia coli K-12 ortholog: b1957; Escherichia coli O157:H7 ortholog: z3048.


ensembl_gene_id: c2377
symbol: yedI
gene_biotype: protein_coding
description:
  Hypothetical protein yedI; Escherichia coli K-12 ortholog: b1958; Escherichia coli O157:H7 ortholog: z3049.


ensembl_gene_id: c2378
symbol: yedA
gene_biotype: protein_coding
description:
  Hypothetical transport protein yedA; Escherichia coli K-12 ortholog: b1959; Escherichia coli O157:H7 ortholog: z3050.


ensembl_gene_id: c2379
symbol: vsr
gene_biotype: protein_coding
description:
  Very short patch repair protein; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.


ensembl_gene_id: c2380
symbol: dcm
gene_biotype: protein_coding
description:
  DNA-cytosine methyltransferase; Escherichia coli K-12 ortholog: b1961; Escherichia coli O157:H7 ortholog: z3054.


ensembl_gene_id: c2381
symbol: yedJ
gene_biotype: protein_coding
description:
  Hypothetical protein yedJ; Escherichia coli K-12 ortholog: b1962; Escherichia coli O157:H7 ortholog: z3055.


ensembl_gene_id: c2382
symbol: yedR
gene_biotype: protein_coding
description:
  Hypothetical protein yedR; Escherichia coli K-12 ortholog: b1963; Escherichia coli O157:H7 ortholog: z3056.


ensembl_gene_id: c2383
symbol: c2383
gene_biotype: protein_coding
description:
  Outer membrane protein N precursor; Porin ompN; Escherichia coli K-12 ortholog: b1377; Escherichia coli O157:H7 ortholog: z0302.


ensembl_gene_id: c2385
symbol: yedU
gene_biotype: protein_coding
description:
  Protein yedU; Protein and nucleotide deglycase that catalyzes the deglycation of the Maillard adducts formed between amino groups of proteins or nucleotides and reactive carbonyl groups of glyoxals. Thus, functions as a protein deglycase that repairs methylglyoxal- and glyoxal-glycated proteins, and releases repaired proteins and lactate or glycolate, respectively. Deglycates cysteine, arginine and lysine residues in proteins, and thus reactivates these proteins by reversing glycation by glyoxals. Acts on early glycation intermediates (hemithioacetals and aminocarbinols), preventing th [...]


ensembl_gene_id: c2387
symbol: yedW
gene_biotype: protein_coding
description:
  Probable transcriptional Regulatory protein yedW; Escherichia coli K-12 ortholog: b1969; Escherichia coli O157:H7 ortholog: z3061.


ensembl_gene_id: c2388
symbol: c2388
gene_biotype: protein_coding
description:
  Transthyretin-like protein precursor; Escherichia coli K-12 ortholog: b1970; Escherichia coli O157:H7 ortholog: z3062; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.


ensembl_gene_id: c2389
symbol: yedY
gene_biotype: protein_coding
description:
  Hypothetical protein yedY; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation, including the primary periplasmic chaperone SurA and the lipoprotein Pal. The catal [...]


ensembl_gene_id: c2390
symbol: yedZ
gene_biotype: protein_coding
description:
  Hypothetical protein yedZ; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation, including the primary periplasmic chaperone SurA and the lipoprotein Pal. MsrQ prov [...]


ensembl_gene_id: c2391
symbol: yodA
gene_biotype: protein_coding
description:
  Hypothetical protein yodA; Escherichia coli K-12 ortholog: b1973; Escherichia coli O157:H7 ortholog: z3065.


ensembl_gene_id: c2393
symbol: c2393
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 9 to 606 of 606 are 31.75 pct identical to residues 13 to 622 of 624 from GenPept.129 : >gb|AAL21647.1| (AE008825) putative inner membrane protein [Salmonella typhimurium LT2].


ensembl_gene_id: c2394
symbol: c2394
gene_biotype: protein_coding
description:
  PilV-like protein; Residues 5 to 407 of 487 are 26.82 pct identical to residues 6 to 347 of 417 from GenPept.129 : >dbj|BAB12639.1| (AP002527) 100 pct identical to gp:ECINCI2_2[PilV of plasmid R721]; 48 pct identical(7 gaps) to397 residues of 474 aa protein gp:D88588_18[PilV of plasmid R64] [Escherichia coli].


ensembl_gene_id: c2395
symbol: c2395
gene_biotype: protein_coding
description:
  Putative type IV pilin protein precursor; Residues 7 to 184 of 185 are 27.37 pct identical to residues 21 to 183 of 185 from GenPept.129 : >dbj|BAB12642.1| (AP002527) 30 pct identical(11 gaps) to gp:D88588_15[PilS of plasmid R64] [Escherichia coli].


ensembl_gene_id: c2397
symbol: c2397
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 201 of 500 are 45.77 pct identical to residues 1 to 200 of 714 from GenPept.129 : >gb|AAK13432.1| (AF322908) repB/MobA-like protein [Xylella fastidiosa].


ensembl_gene_id: c2398
symbol: TcpC
gene_biotype: protein_coding
description:
  Hypothetical protein; Virulence factor that suppresses host Toll-like receptor (TLR)-mediated cytokine production upon infection, thereby increasing bacterial burden in the urinary tract and promoting renal tissue damage. Acts as a NAD(+) hydrolase (NADase) by catalyzing cleavage of NAD(+) into ADP-D-ribose (ADPR) and nicotinamide. Also able to hydrolyze NADP(+), but not other NAD(+)-related molecules.


ensembl_gene_id: c2399
symbol: c2399
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 108 of 169 are 35.19 pct identical to residues 1 to 119 of 186 from GenPept.129 : >dbj|BAB73899.1| (AP003588) ORF_ID:all2200; unknown protein [Nostoc sp. PCC 7120].


ensembl_gene_id: c2400
symbol: c2400
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 278 of 278 are 66.18 pct identical to residues 5 to 282 of 282 from GenPept.129 : >emb|CAD16319.1| (AL646071) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum].


ensembl_gene_id: c2404
symbol: c2404
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 23 to 67 of 70 are 57.77 pct identical to residues 16 to 60 of 131 from GenPept.129 : >dbj|BAB36929.1| (AP002562) hypothetical lipoprotein [Escherichia coli O157:H7].


ensembl_gene_id: c2408
symbol: c2408
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 168 of 193 are 33.33 pct identical to residues 8 to 171 of 193 from GenPept.129 : >dbj|BAA92822.1| (AB022096) replication protein [Pseudoalteromonas sp. PS1M3].


ensembl_gene_id: c2411
symbol: c2411
gene_biotype: protein_coding
description:
  DNA-binding protein H-NS; Histone-like protein HLP-II; Escherichia coli K-12 ortholog: b1237; Escherichia coli O157:H7 ortholog: z2013; Belongs to the histone-like protein H-NS family.


ensembl_gene_id: c2412
symbol: c2412
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 24 to 125 of 126 are 52.94 pct identical to residues 1 to 102 of 102 from GenPept.129 : >gb|AAA23184.1| (M13819) unknown [Plasmid ColIa].


ensembl_gene_id: c2416
symbol: c2416
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 24 to 281 of 297 are 26.97 pct identical to residues 7 to 269 of 283 from GenPept.129 : >gb|AAG57759.1|AE005493_12 (AE005493) Z3947 gene product [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2417
symbol: yeeI
gene_biotype: protein_coding
description:
  Hypothetical protein yeeI; Involved in the regulation of ptsG expression by binding and inactivating Mlc.


ensembl_gene_id: c2418
symbol: c2418
gene_biotype: protein_coding
description:
  Prophage P4 integrase; Int(P4); Escherichia coli K-12 ortholog: b4271; Escherichia coli O157:H7 ortholog: z4313; Belongs to the 'phage' integrase family.


ensembl_gene_id: c2419
symbol: c2419
gene_biotype: protein_coding
description:
  Putative anthranilate synthase; Similar to YbtS [Yersinia pestis] and Irp9 [Yersinia enterocolitica]; Residues 1 to 434 of 434 are 99.76 pct identical to residues 1 to 434 of 434 from GenPept.129 : >emb|CAC90732.1| (AJ414150) putative salicylate synthetase [Yersinia pestis].


ensembl_gene_id: c2420
symbol: c2420
gene_biotype: protein_coding
description:
  Putative cytoplasmic transmembrane protein; Similar to YbtX [Yersinia pestis] and Irp8 [Yersinia enterocolitica]; Residues 6 to 467 of 467 are 99.35 pct identical to residues 1 to 462 of 462 from GenPept.129 : >emb|CAA21386.1| (AL031866) ORF63,len=462 aa, putative transmembrane protein, similarity to Escherichia coli ECAMPG3_1 E.coli ampG3 gene, 27.1% identity in 376 aa overlap, Fasta scores: opt: 311, E(): 1.1e-12 [Yersinia pestis].


ensembl_gene_id: c2421
symbol: c2421
gene_biotype: protein_coding
description:
  Putative ABC transporter protein; Similar to YbtQ [Yersinia pestis] and Irp7 [Yersinia enterocolitica]; Residues 10 to 609 of 609 are 99.50 pct identical to residues 1 to 600 of 600 from GenPept.129 : >emb|CAC90730.1| (AJ414150) inner membrane ABC-transporter YbtQ [Yersinia pestis].


ensembl_gene_id: c2422
symbol: c2422
gene_biotype: protein_coding
description:
  Putative inner membrane ABC-transporter; Similar to YbtP [Yersinia pestis] and Irp6 [Yersinia enterocolitica]; Residues 1 to 600 of 600 are 100.00 pct identical to residues 1 to 600 of 600 from GenPept.129 : >gb|AAC69585.1| (AF091251) YbtP [Yersinia pestis].


ensembl_gene_id: c2423
symbol: c2423
gene_biotype: protein_coding
description:
  Similar to YbtA, AraC type regulator [Yersinia pestis]; Residues 1 to 319 of 319 are 99.37 pct identical to residues 1 to 319 of 319 from GenPept.129 : >emb|CAC90728.1| (AJ414150) transcriptional regulator YbtA [Yersinia pestis].


ensembl_gene_id: c2424
symbol: c2424
gene_biotype: protein_coding
description:
  Similar to middle of Ybt peptide synthetase HMWP2 [Yersinia pestis]; Residues 7 to 1418 of 1422 are 98.22 pct identical to residues 1 to 1412 of 2035 from SwissProt.40 : >sp|P48633|HMP2_YEREN High-molecular-weight protein 2 (HMWP2).


ensembl_gene_id: c2425
symbol: c2425
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 125 of 125 are 93.54 pct identical to residues 29 to 152 of 152 from SwissProt.40 : >sp|Q57334|T200_SALTY Transposase for insertion sequence element IS200.


ensembl_gene_id: c2426
symbol: c2426
gene_biotype: protein_coding
description:
  Similar to C-terminus of Ybt peptide synthetase HMWP2 [Yersinia pestis]; Residues 95 to 597 of 709 are 35.05 pct identical to residues 34 to 551 of 2035 from GenPept.129 : >emb|CAC90727.1| (AJ414150) yersiniabactin biosynthetic protein [Yersinia pestis].


ensembl_gene_id: c2427
symbol: c2427
gene_biotype: protein_coding
description:
  Putative peptide/polyketide synthetase protein; Similar to the N-terminus of the synthetase for the yersiniabactin siderophore [Yersinia enterocolitica]; Residues 5 to 721 of 731 are 99.72 pct identical to residues 1 to 717 of 3163 from GenPept.129 : >emb|CAC90726.1| (AJ414150) yersiniabactin biosynthetic protein [Yersinia pestis].


ensembl_gene_id: c2428
symbol: c2428
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 276 to 576 of 965 are 29.73 pct identical to residues 2481 to 2770 of 3163 from GenPept.129 : >emb|CAC90726.1| (AJ414150) yersiniabactin biosynthetic protein [Yersinia pestis].


ensembl_gene_id: c2429
symbol: c2429
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 887 to 1176 of 1569 are 29.73 pct identical to residues 970 to 1270 of 3163 from GenPept.129 : >emb|CAC90726.1| (AJ414150) yersiniabactin biosynthetic protein [Yersinia pestis].


ensembl_gene_id: c2430
symbol: c2430
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 366 of 366 are 99.72 pct identical to residues 1 to 366 of 366 from GenPept.129 : >emb|CAC90725.1| (AJ414150) yersiniabactin biosynthetic protein YbtU [Yersinia pestis].


ensembl_gene_id: c2432
symbol: c2432
gene_biotype: protein_coding
description:
  Putative thioesterase; Similar to YbtT [Yersinia pestis]; Residues 1 to 187 of 218 are 40.95 pct identical to residues 48 to 235 of 252 from SwissProt.40 : >sp|P19829|SAST_VIBAN Probable anguibactin biosynthesis thioesterase.


ensembl_gene_id: c2434
symbol: c2434
gene_biotype: protein_coding
description:
  Putative salicyl-AMP ligase; Similar to ligase YbtE [Yersinia pestis]; Residues 1 to 94 of 94 are 98.93 pct identical to residues 432 to 525 of 525 from GenPept.129 : >emb|CAC90723.1| (AJ414150) yersiniabactin siderophore biosynthetic protein [Yersinia pestis].


ensembl_gene_id: c2436
symbol: c2436
gene_biotype: protein_coding
description:
  Putative pesticin receptor precursor; Similar to FyuA precursor [Yersinia pestis]; Residues 1 to 673 of 673 are 99.85 pct identical to residues 1 to 673 of 673 from SwissProt.40 : >sp|P46359|FYUA_YERPE Pesticin receptor precursor (IRPC).


ensembl_gene_id: c2437
symbol: c2437
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 14 to 136 of 268 are 98.37 pct identical to residues 2 to 124 of 128 from GenPept.129 : >gb|AAC69596.1| (AF091251) unknown [Yersinia pestis].


ensembl_gene_id: c2438
symbol: c2438
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 47 of 56 are 93.61 pct identical to residues 1459 to 1505 of 2383 from GenPept.129 : >gb|AAC75042.1| (AE000289) putative factor [Escherichia coli K12].


ensembl_gene_id: c2439
symbol: c2439
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 35 to 487 of 489 are 26.20 pct identical to residues 531 to 997 of 2383 from GenPept.129 : >gb|AAC75042.1| (AE000289) putative factor [Escherichia coli K12].


ensembl_gene_id: c2440
symbol: c2440
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 148 of 158 are 82.43 pct identical to residues 2127 to 2273 of 2383 from GenPept.129 : >gb|AAC75042.1| (AE000289) putative factor [Escherichia coli K12].


ensembl_gene_id: c2441
symbol: c2441
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 206 of 206 are 95.14 pct identical to residues 145 to 350 of 350 from GenPept.129 : >dbj|BAB36200.1| (AP002559) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c2442
symbol: c2442
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 22 to 157 of 172 are 98.52 pct identical to residues 1 to 136 of 350 from GenPept.129 : >gb|AAG57043.1|AE005424_1 (AE005424) Z3137 gene product [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2443
symbol: shiA
gene_biotype: protein_coding
description:
  Shikimate transporter; Escherichia coli K-12 ortholog: b1981; Escherichia coli O157:H7 ortholog: z3138.


ensembl_gene_id: c2444
symbol: amn
gene_biotype: protein_coding
description:
  AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.


ensembl_gene_id: c2445
symbol: yeeN
gene_biotype: protein_coding
description:
  Hypothetical protein yeeN; Escherichia coli K-12 ortholog: b1983; Escherichia coli O157:H7 ortholog: z3140.


ensembl_gene_id: c2446
symbol: nac
gene_biotype: protein_coding
description:
  Nitrogen assimilation control protein; Escherichia coli K-12 ortholog: b1988; Escherichia coli O157:H7 ortholog: z3147; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c2447
symbol: cbl
gene_biotype: protein_coding
description:
  Transcriptional regulator cbl; Escherichia coli K-12 ortholog: b1987; Escherichia coli O157:H7 ortholog: z3146; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c2448
symbol: yeeO
gene_biotype: protein_coding
description:
  Hypothetical protein yeeO; Escherichia coli K-12 ortholog: b1985; Escherichia coli O157:H7 ortholog: z3144.


ensembl_gene_id: c2450
symbol: c2450
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 166 of 170 are 53.61 pct identical to residues 1 to 165 of 172 from GenPept.129 : >gb|AAF60966.1|AF188737_1 (AF188737) unknown [Escherichia coli].


ensembl_gene_id: c2451
symbol: c2451
gene_biotype: protein_coding
description:
  Putative thioesterase; Residues 4 to 233 of 240 are 33.91 pct identical to residues 1 to 228 of 234 from GenPept.129 : >gb|AAD21211.1| (AF007865) BacT [Bacillus licheniformis].


ensembl_gene_id: c2452
symbol: c2452
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 41 to 499 of 504 are 27.77 pct identical to residues 41 to 494 of 498 from GenPept.129 : >dbj|BAB58603.1| (AP003365) hypothetical protein [Staphylococcus aureus subsp. aureus Mu50].


ensembl_gene_id: c2453
symbol: c2453
gene_biotype: protein_coding
description:
  Putative polyketide synthase; Residues 13 to 647 of 819 are 36.74 pct identical to residues 1458 to 2126 of 3291 from GenPept.129 : >gb|AAF19812.1|AF188287_4 (AF188287) MtaD [Stigmatella aurantiaca].


ensembl_gene_id: c2454
symbol: c2454
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 47 to 278 of 371 are 30.20 pct identical to residues 1809 to 2049 of 2157 from GenPept.129 : >gb|AAL44495.1| (AE009298) peptide synthetase [Agrobacterium tumefaciens str. C58 (U. Washington)].


ensembl_gene_id: c2455
symbol: c2455
gene_biotype: protein_coding
description:
  Putative peptide synthetase; Residues 35 to 363 of 1120 are 22.25 pct identical to residues 4932 to 5253 of 5369 from GenPept.129 : >gb|AAF08796.1|AF184956_3 (AF184956) MycB [Bacillus subtilis]; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: c2456
symbol: c2456
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 26 to 457 of 479 are 29.47 pct identical to residues 14 to 449 of 461 from GenPept.129 : >gb|AAL80832.1| (AE010190) hypothetical protein [Pyrococcus furiosus DSM 3638].


ensembl_gene_id: c2457
symbol: c2457
gene_biotype: protein_coding
description:
  Putative amidase; Residues 17 to 492 of 495 are 35.31 pct identical to residues 12 to 484 of 507 from GenPept.129 : >gb|AAG30199.1| (AF293442) enantiomer selective amidase [Streptomyces sp. R1128].


ensembl_gene_id: c2458
symbol: c2458
gene_biotype: protein_coding
description:
  Putative peptide synthetase; Residues 1988 to 2110 of 2154 are 33.33 pct identical to residues 947 to 1067 of 2459 from GenPept.129 : >dbj|BAB74344.1| (AP003590) peptide synthetase [Nostoc sp. PCC 7120].


ensembl_gene_id: c2459
symbol: c2459
gene_biotype: protein_coding
description:
  Putative peptide synthetase; Residues 1998 to 2132 of 2166 are 30.37 pct identical to residues 2271 to 2401 of 2459 from GenPept.129 : >dbj|BAB74344.1| (AP003590) peptide synthetase [Nostoc sp. PCC 7120].


ensembl_gene_id: c2460
symbol: c2460
gene_biotype: protein_coding
description:
  Putative polyketide synthase; Residues 4 to 882 of 1010 are 46.58 pct identical to residues 8 to 898 of 1244 from GenPept.129 : >gb|AAF15892.2|AF204805_2 (AF204805) NosB [Nostoc sp. GSV224].


ensembl_gene_id: c2461
symbol: c2461
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 46 to 514 of 1603 are 34.82 pct identical to residues 2731 to 3210 of 3317 from GenPept.129 : >gb|AAF17280.1| (AF204805) NosC [Nostoc sp. GSV224].


ensembl_gene_id: c2463
symbol: c2463
gene_biotype: protein_coding
description:
  Putative transacylase; Residues 4 to 392 of 422 are 29.30 pct identical to residues 3 to 374 of 400 from GenPept.129 : >dbj|BAB69697.1| (AB050629) putative malonyl-CoA transacylase [Bacillus subtilis].


ensembl_gene_id: c2464
symbol: c2464
gene_biotype: protein_coding
description:
  Putative acyl-coa dehydrogenase; Residues 3 to 335 of 342 are 35.02 pct identical to residues 35 to 368 of 382 from GenPept.129 : >gb|AAD40109.1|AF155831_3 (AF155831) unknown [Bacillus cereus].


ensembl_gene_id: c2466
symbol: c2466
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 78 of 82 are 30.76 pct identical to residues 1 to 77 of 81 from GenPept.129 : >gb|AAL32271.1| (AF235003) putative D-alanyl carrier protein [Bacillus thuringiensis serovar kurstaki].


ensembl_gene_id: c2467
symbol: c2467
gene_biotype: protein_coding
description:
  Putative 3-hydroxyacyl-CoA dehydrogenase; Residues 2 to 282 of 289 are 45.55 pct identical to residues 1 to 278 of 278 from SwissProt.40 : >sp|Q9RVG1|HBD_DEIRA Probable 3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD).


ensembl_gene_id: c2468
symbol: c2468
gene_biotype: protein_coding
description:
  Putative polyketide synthase; Residues 15 to 504 of 869 are 46.97 pct identical to residues 1458 to 1953 of 3291 from GenPept.129 : >gb|AAF19812.1|AF188287_4 (AF188287) MtaD [Stigmatella aurantiaca].


ensembl_gene_id: c2469
symbol: c2469
gene_biotype: protein_coding
description:
  Putative polyketide synthase; Residues 34 to 562 of 1352 are 24.60 pct identical to residues 2344 to 2882 of 7257 from GenPept.129 : >gb|AAF62883.1|AF217189_6 (AF217189) epoD [Polyangium cellulosum].


ensembl_gene_id: c2470
symbol: c2470
gene_biotype: protein_coding
description:
  Putative peptide/polyketide synthase; Residues 527 to 1874 of 1875 are 32.28 pct identical to residues 47 to 1483 of 2632 from GenPept.129 : >dbj|BAB12213.1| (AB032549) peptide synthetase and polyketide synthase [Microcystis aeruginosa].


ensembl_gene_id: c2471
symbol: c2471
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 22 to 171 of 244 are 38.41 pct identical to residues 32 to 178 of 249 from GenPept.129 : >gb|AAD10395.1| (U46488) NrpG [Proteus mirabilis]; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: c2472
symbol: c2472
gene_biotype: protein_coding
description:
  Transposase; Residues 1 to 88 of 88 are 71.59 pct identical to residues 1 to 88 of 88 from SwissProt.40 : >sp|Q00931|LCRS_YERPE Low calcium response locus protein S.


ensembl_gene_id: c2473
symbol: c2473
gene_biotype: protein_coding
description:
  Transposase; Residues 3 to 148 of 159 are 46.57 pct identical to residues 24 to 169 of 183 from SwissProt.40 : >sp|P24577|YI71_BURCE INSERTION ELEMENT IS407 HYPOTHETICAL 20.5 KD PROTEIN (ORF1).


ensembl_gene_id: c2474
symbol: c2474
gene_biotype: protein_coding
description:
  Transposase; Residues 3 to 75 of 75 are 85.00 pct identical to residues 115 to 194 of 194 from GenPept.129 : >gb|AAL72372.1| (AF386526) transposase [Shigella flexneri 2a].


ensembl_gene_id: c2476
symbol: erfK
gene_biotype: protein_coding
description:
  Protein erfK/srfK precursor; Escherichia coli K-12 ortholog: b1990; Escherichia coli O157:H7 ortholog: z3150.


ensembl_gene_id: c2477
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). Belongs to the CobT family.


ensembl_gene_id: c2478
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin [5'-phosphate] synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: c2479
symbol: cobU
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein cobU; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.


ensembl_gene_id: c2482
symbol: c2482
gene_biotype: protein_coding
description:
  Putative outer membrane receptor for iron compound or colicin; Escherichia coli O157:H7 ortholog: z3159.


ensembl_gene_id: c2484
symbol: c2484
gene_biotype: protein_coding
description:
  Hypothetical protein ybdM; Escherichia coli K-12 ortholog: b0601; Escherichia coli O157:H7 ortholog: z1644.


ensembl_gene_id: c2485
symbol: c2485
gene_biotype: protein_coding
description:
  Hypothetical protein ybdN; Escherichia coli K-12 ortholog: b0602; Escherichia coli O157:H7 ortholog: z1643.


ensembl_gene_id: c2486
symbol: c2486
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 17 to 198 of 236 are 64.86 pct identical to residues 1 to 185 of 185 from SwissProt.40 : >sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA INTERGENIC REGION.


ensembl_gene_id: c2492
symbol: rbsK-3
gene_biotype: protein_coding
description:
  Putative carbohydrate kinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: c2493
symbol: c2493
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 252 of 252 are 81.74 pct identical to residues 1 to 252 of 253 from GenPept.129 : >gb|AAL22408.1| (AE008863) putative cytoplasmic protein [Salmonella typhimurium LT2].


ensembl_gene_id: c2494
symbol: c2494
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 321 of 321 are 93.76 pct identical to residues 1 to 321 of 323 from GenPept.129 : >emb|CAD08080.1| (AL627281) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c2495
symbol: c2495
gene_biotype: protein_coding
description:
  Putative phosphotriesterase-related protein; Residues 1 to 344 of 344 are 86.62 pct identical to residues 1 to 344 of 344 from GenPept.129 : >gb|AAL22410.1| (AE008863) putative phosphotriesterase [Salmonella typhimurium LT2].


ensembl_gene_id: c2496
symbol: c2496
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 53 of 53 are 94.33 pct identical to residues 487 to 539 of 539 from GenPept.129 : >gb|AAL57569.1|AF453441_53 (AF453441) putative transposase [Escherichia coli].


ensembl_gene_id: c2497
symbol: c2497
gene_biotype: protein_coding
description:
  Transposase; Residues 2 to 285 of 285 are 92.25 pct identical to residues 176 to 459 of 539 from GenPept.129 : >gb|AAL57569.1|AF453441_53 (AF453441) putative transposase [Escherichia coli].


ensembl_gene_id: c2498
symbol: c2498
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 129 of 136 are 97.67 pct identical to residues 30 to 158 of 173 from GenPept.129 : >gb|AAL08463.1|AF326777_38 (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c2499
symbol: c2499
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 121 of 133 are 87.60 pct identical to residues 1 to 121 of 127 from GenPept.129 : >gb|AAK00467.1| (AF200692) unknown [Shigella flexneri 2a].


ensembl_gene_id: c2500
symbol: c2500
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 17 to 201 of 201 are 40.43 pct identical to residues 6 to 235 of 246 from GenPept.129 : >gb|AAL67401.1|AF447814_69 (AF447814) intergenic-region protein [Escherichia coli].


ensembl_gene_id: c2501
symbol: c2501
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 43 of 58 are 97.67 pct identical to residues 1 to 43 of 58 from GenPept.129 : >gb|AAL08465.1|AF326777_40 (AF326777) putative transcriptional regulator [Shigella flexneri 2a].


ensembl_gene_id: c2503
symbol: c2503
gene_biotype: protein_coding
description:
  Transposase; Residues 6 to 393 of 398 are 58.82 pct identical to residues 3 to 393 of 405 from SwissProt.40 : >sp|P19780|YIS1_STRCO Insertion element IS110 hypothetical 43.6 kDa protein.


ensembl_gene_id: c2505
symbol: c2505
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 92 of 92 are 93.47 pct identical to residues 1 to 92 of 92 from GenPept.129 : >gb|AAL08466.1| (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c2506
symbol: c2506
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 4 to 78 of 79 are 97.33 pct identical to residues 1 to 75 of 202 from GenPept.129 : >gb|AAL08467.1| (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c2508
symbol: c2508
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 174 of 174 are 99.42 pct identical to residues 315 to 488 of 488 from GenPept.129 : >gb|AAL67386.1|AF447814_54 (AF447814) R6-like protein [Escherichia coli].


ensembl_gene_id: c2509
symbol: c2509
gene_biotype: protein_coding
description:
  Insertion sequence ATP-binding protein; Residues 1 to 244 of 251 are 41.60 pct identical to residues 1 to 250 of 298 from SwissProt.40 : >sp|P55500|Y4IQ_RHISN PUTATIVE INSERTION SEQUENCE ATP-BINDING PROTEIN Y4IQ/Y4ND/Y4SD.


ensembl_gene_id: c2510
symbol: c2510
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 113 of 117 are 84.95 pct identical to residues 86 to 198 of 202 from GenPept.129 : >gb|AAL08467.1| (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c2511
symbol: c2511
gene_biotype: protein_coding
description:
  Insertion sequence ATP-binding protein; Residues 10 to 256 of 260 are 46.96 pct identical to residues 4 to 248 of 265 from SwissProt.40 : >sp|P15026|ISTB_PSEAE Insertion sequence IS21 putative ATP-binding protein.


ensembl_gene_id: c2512
symbol: c2512
gene_biotype: protein_coding
description:
  Transposase; Residues 1 to 340 of 340 are 99.70 pct identical to residues 1 to 340 of 340 from GenPept.129 : >emb|CAC43410.1| (X16664) Y1093 protein [Escherichia coli].


ensembl_gene_id: c2515
symbol: c2515
gene_biotype: protein_coding
description:
  Putative ABC transporter; Residues 1 to 255 of 255 are 100.00 pct identical to residues 1 to 255 of 255 from GenPept.129 : >gb|AAL67370.1|AF447814_38 (AF447814) ferric-enterobactin-transport protein [Escherichia coli].


ensembl_gene_id: c2516
symbol: c2516
gene_biotype: protein_coding
description:
  ABC transporter, FecCD transport family; Residues 1 to 352 of 352 are 100.00 pct identical to residues 1 to 352 of 352 from GenPept.129 : >gb|AAL67369.1|AF447814_37 (AF447814) putative permease [Escherichia coli].


ensembl_gene_id: c2517
symbol: c2517
gene_biotype: protein_coding
description:
  Periplasmic binding protein; Residues 1 to 330 of 330 are 99.39 pct identical to residues 1 to 332 of 332 from GenPept.129 : >gb|AAL67368.1|AF447814_36 (AF447814) iron-chelating periplasmic-binding protein [Escherichia coli].


ensembl_gene_id: c2518
symbol: c2518
gene_biotype: protein_coding
description:
  TonB dependent receptor; Residues 1 to 530 of 721 are 100.00 pct identical to residues 1 to 530 of 536 from GenPept.129 : >gb|AAL67366.1|AF447814_34 (AF447814) truncated ferric siderophore receptor [Escherichia coli].


ensembl_gene_id: c2524
symbol: c2524
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 37 to 261 of 261 are 91.18 pct identical to residues 1 to 227 of 227 from GenPept.129 : >dbj|BAB36222.1| (AP002559) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c2525
symbol: c2525
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 135 of 136 are 95.55 pct identical to residues 1 to 135 of 136 from GenPept.129 : >dbj|BAB36223.1| (AP002559) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c2528
symbol: c2528
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 174 of 179 are 87.93 pct identical to residues 125 to 298 of 319 from GenPept.129 : >gb|AAL67347.1|AF447814_15 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c2530
symbol: yeeT
gene_biotype: protein_coding
description:
  Hypothetical protein yeeT; Escherichia coli K-12 ortholog: b2003; Escherichia coli O157:H7 ortholog: z3163; Belongs to the YeeT/YkfH/YpjJ family.


ensembl_gene_id: c2531
symbol: c2531
gene_biotype: protein_coding
description:
  Hypothetical protein yeeU; Escherichia coli K-12 ortholog: b2004; Escherichia coli O157:H7 ortholog: z3164.


ensembl_gene_id: c2532
symbol: cbtA
gene_biotype: protein_coding
description:
  Hypothetical protein yeeV; Toxic component of a type IV toxin-antitoxin (TA) system. Acts as a dual toxin inhibitor that blocks cell division and cell elongation in genetically separable interactions with FtsZ and MreB. Toxic effects are neutralized by cognate antitoxin CbeA (A0A0H2V8S8), although there is no direct interaction detected between the 2 proteins.


ensembl_gene_id: c2533
symbol: yeeW
gene_biotype: protein_coding
description:
  Hypothetical protein yeeW; Escherichia coli K-12 ortholog: b2006; Escherichia coli O157:H7 ortholog: z3166.


ensembl_gene_id: c2534
symbol: yeeX
gene_biotype: protein_coding
description:
  Hypothetical protein yeeX; Escherichia coli K-12 ortholog: b2007; Escherichia coli O157:H7 ortholog: z3168; Belongs to the UPF0265 family.


ensembl_gene_id: c2536
symbol: yeeA
gene_biotype: protein_coding
description:
  Hypothetical protein yeeA; Escherichia coli K-12 ortholog: b2008; Escherichia coli O157:H7 ortholog: z3169.


ensembl_gene_id: c2537
symbol: sbmC
gene_biotype: protein_coding
description:
  DNA gyrase inhibitory protein; Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell.


ensembl_gene_id: c2538
symbol: dacD
gene_biotype: protein_coding
description:
  Penicillin-binding protein 6B precursor; D-alanyl-D-alanine carboxypeptidase; Escherichia coli K-12 ortholog: b2010; Escherichia coli O157:H7 ortholog: z3171; Belongs to the peptidase S11 family.


ensembl_gene_id: c2540
symbol: yeeF
gene_biotype: protein_coding
description:
  Hypothetical transport protein yeeF; Escherichia coli K-12 ortholog: b2014; Escherichia coli O157:H7 ortholog: z3176.


ensembl_gene_id: c2542
symbol: yeeY
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yeeY; Escherichia coli K-12 ortholog: b2015; Escherichia coli O157:H7 ortholog: z3177; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c2543
symbol: c2543
gene_biotype: protein_coding
description:
  Protein yeeZ precursor; Escherichia coli K-12 ortholog: b2016; Escherichia coli O157:H7 ortholog: z3178.


ensembl_gene_id: c2544
symbol: yoeB
gene_biotype: protein_coding
description:
  Hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system. It has been proposed to be an mRNA interferase but also an inhibitor of translation initiation. Has an in vitro RNase activity and preferentially cleaves at the 3'-end of purine ribonucleotides. YefM binds to the promoter region of the yefM-yeoB operon to repress transcription, YeoB acts as a corepressor (By similarity).


ensembl_gene_id: c2545
symbol: yefM
gene_biotype: protein_coding
description:
  Hypothetical protein yefM; Antitoxin component of a type II toxin-antitoxin (TA) system. Antitoxin that counteracts the effect of the YoeB mRNA interferase. YefM binds to the promoter region of the yefM-yeoB operon to repress transcription, YeoB acts as a corepressor (By similarity).


ensembl_gene_id: c2546
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity (By similarity).


ensembl_gene_id: c2547
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: c2548
symbol: hisC
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase; Escherichia coli K-12 ortholog: b2021; Escherichia coli O157:H7 ortholog: z3183; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: c2549
symbol: hisB
gene_biotype: protein_coding
description:
  Histidine biosynthesis bifunctional protein hisB; Escherichia coli K-12 ortholog: b2022; Escherichia coli O157:H7 ortholog: z3184; bifunctional; Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.


ensembl_gene_id: c2550
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF (By similarity).


ensembl_gene_id: c2551
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Escherichia coli K-12 ortholog: b2024; Escherichia coli O157:H7 ortholog: z3186; Belongs to the HisA/HisF family.


ensembl_gene_id: c2552
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: c2553
symbol: hisI
gene_biotype: protein_coding
description:
  Histidine biosynthesis bifunctional protein hisIE; Escherichia coli K-12 ortholog: b2026; Escherichia coli O157:H7 ortholog: z3188; bifunctional; Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphatase; In the C-terminal section; belongs to the PRA-PH family.


ensembl_gene_id: c2554
symbol: wzzB
gene_biotype: protein_coding
description:
  Chain length determinant protein; Polysaccharide antigen chain regulator; Escherichia coli K-12 ortholog: b2027; Escherichia coli O157:H7 ortholog: z3189.


ensembl_gene_id: c2555
symbol: ugd
gene_biotype: protein_coding
description:
  UDP-glucose 6-dehydrogenase; Escherichia coli K-12 ortholog: b2028; Escherichia coli O157:H7 ortholog: z3190; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: c2556
symbol: gnd
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: c2557
symbol: manB
gene_biotype: protein_coding
description:
  Phosphomannomutase; Escherichia coli K-12 ortholog: b2048; Escherichia coli O157:H7 ortholog: z3194.


ensembl_gene_id: c2558
symbol: c2558
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanylyltransferase; GDP; Escherichia coli K-12 ortholog: b2049; Escherichia coli O157:H7 ortholog: z3213; Belongs to the mannose-6-phosphate isomerase type 2 family.


ensembl_gene_id: c2559
symbol: c2559
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 365 of 371 are 50.00 pct identical to residues 28 to 394 of 399 from GenPept.129 : >gb|AAB49389.1| (M84642) orf7.17; function unknown [Salmonella enterica].


ensembl_gene_id: c2561
symbol: c2561
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 83 to 355 of 381 are 22.83 pct identical to residues 512 to 777 of 812 from GenPept.129 : >gb|AAM04600.1| (AE010785) glycosyltransferase [Methanosarcina acetivorans str. C2A].


ensembl_gene_id: c2562
symbol: c2562
gene_biotype: protein_coding
description:
  Glycosyl transferase; Residues 169 to 353 of 360 are 27.89 pct identical to residues 153 to 336 of 336 from GenPept.129 : >gb|AAL80431.1| (AE010155) glycosyltransferase [Pyrococcus furiosus DSM 3638].


ensembl_gene_id: c2563
symbol: c2563
gene_biotype: protein_coding
description:
  Glycosyl transferase; Residues 9 to 179 of 289 are 31.21 pct identical to residues 8 to 173 of 327 from GenPept.129 : >gb|AAC69672.1| (AF019746) putative beta1,3-glucosyltransferase WaaV [Escherichia coli].


ensembl_gene_id: c2564
symbol: c2564
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 338 to 445 of 453 are 28.81 pct identical to residues 357 to 474 of 477 from GenPept.129 : >gb|AAL00026.1| (AE008494) Hypothetical protein [Streptococcus pneumoniae R6].


ensembl_gene_id: c2566
symbol: c2566
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 409 of 418 are 24.94 pct identical to residues 7 to 412 of 431 from GenPept.129 : >gb|AAK81005.1|AE007803_8 (AE007803) Possible O-antigen/teichoic acid transporter [Clostridium acetobutylicum].


ensembl_gene_id: c2567
symbol: galF
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase; Escherichia coli K-12 ortholog: b2042; Escherichia coli O157:H7 ortholog: z3205.


ensembl_gene_id: c2568
symbol: wcaM
gene_biotype: protein_coding
description:
  Colanic acid biosynthesis protein wcaM; Escherichia coli K-12 ortholog: b2043; Escherichia coli O157:H7 ortholog: z3207.


ensembl_gene_id: c2569
symbol: wcaL
gene_biotype: protein_coding
description:
  Putative colanic acid biosynthesis glycosyl transferase wcaL; Escherichia coli K-12 ortholog: b2044; Escherichia coli O157:H7 ortholog: z3208.


ensembl_gene_id: c2570
symbol: wcaK
gene_biotype: protein_coding
description:
  Colanic acid biosynthesis protein wcaK; Escherichia coli K-12 ortholog: b2045; Escherichia coli O157:H7 ortholog: z3209.


ensembl_gene_id: c2571
symbol: wzxC
gene_biotype: protein_coding
description:
  Lipopolysaccharide biosynthesis protein wzxC; Escherichia coli K-12 ortholog: b2046; Escherichia coli O157:H7 ortholog: z3210.


ensembl_gene_id: c2572
symbol: wcaJ
gene_biotype: protein_coding
description:
  Putative colanic biosynthesis UDP-glucose lipid carrier transferase; Escherichia coli K-12 ortholog: b2047; Escherichia coli O157:H7 ortholog: z3211.


ensembl_gene_id: c2573
symbol: cpsG
gene_biotype: protein_coding
description:
  Phosphomannomutase; Escherichia coli K-12 ortholog: b2048; Escherichia coli O157:H7 ortholog: z3212.


ensembl_gene_id: c2576
symbol: wcaI
gene_biotype: protein_coding
description:
  Putative colanic acid biosynthesis glycosyl transferase wcaI; Escherichia coli K-12 ortholog: b2050; Escherichia coli O157:H7 ortholog: z3214.


ensembl_gene_id: c2578
symbol: wcaG
gene_biotype: protein_coding
description:
  GDP-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.


ensembl_gene_id: c2579
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.


ensembl_gene_id: c2580
symbol: wcaF
gene_biotype: protein_coding
description:
  Putative colanic acid biosynthesis acetyltransferase wcaF; Escherichia coli K-12 ortholog: b2054; Escherichia coli O157:H7 ortholog: z3218.


ensembl_gene_id: c2581
symbol: wcaE
gene_biotype: protein_coding
description:
  Putative colanic acid biosynthesis glycosyl transferase wcaE; Escherichia coli K-12 ortholog: b2055; Escherichia coli O157:H7 ortholog: z3219.


ensembl_gene_id: c2582
symbol: wcaD
gene_biotype: protein_coding
description:
  Putative colanic acid polymerase; Escherichia coli K-12 ortholog: b2056; Escherichia coli O157:H7 ortholog: z3220.


ensembl_gene_id: c2583
symbol: wcaC
gene_biotype: protein_coding
description:
  Putative colanic acid biosynthesis glycosyl transferase wcaC; Escherichia coli K-12 ortholog: b2057; Escherichia coli O157:H7 ortholog: z3221.


ensembl_gene_id: c2584
symbol: wcaB
gene_biotype: protein_coding
description:
  Putative colanic acid biosynthesis acetyltransferase wcaB; Escherichia coli K-12 ortholog: b2058; Escherichia coli O157:H7 ortholog: z3222; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: c2585
symbol: wcaA
gene_biotype: protein_coding
description:
  Putative colanic acid biosynthesis glycosyl transferase wcaA; Escherichia coli K-12 ortholog: b2059; Escherichia coli O157:H7 ortholog: z3223.


ensembl_gene_id: c2586
symbol: c2586
gene_biotype: protein_coding
description:
  Tyrosine-protein kinase wzc; Escherichia coli K-12 ortholog: b2060; Escherichia coli O157:H7 ortholog: z3224.


ensembl_gene_id: c2587
symbol: c2587
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 76 of 76 are 98.68 pct identical to residues 72 to 147 of 147 from GenPept.129 : >gb|AAC77834.1| (U38473) putative acid phosphatase [Escherichia coli]; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: c2588
symbol: c2588
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 167 of 167 are 98.80 pct identical to residues 213 to 379 of 379 from GenPept.129 : >gb|AAG57122.1|AE005432_3 (AE005432) putative polysaccharide export protein [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2589
symbol: c2589
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 211 of 214 are 99.52 pct identical to residues 1 to 211 of 379 from MG1655 : b2062.


ensembl_gene_id: c2590
symbol: yegH
gene_biotype: protein_coding
description:
  Hypothetical protein yegH; Escherichia coli K-12 ortholog: b2063; Escherichia coli O157:H7 ortholog: z3229.


ensembl_gene_id: c2591
symbol: asmA
gene_biotype: protein_coding
description:
  Protein asmA precursor; Escherichia coli K-12 ortholog: b2064; Escherichia coli O157:H7 ortholog: z3232.


ensembl_gene_id: c2593
symbol: udk
gene_biotype: protein_coding
description:
  Uridine kinase; Escherichia coli K-12 ortholog: b2066; Escherichia coli O157:H7 ortholog: z3234; Belongs to the uridine kinase family.


ensembl_gene_id: c2594
symbol: yegE
gene_biotype: protein_coding
description:
  Hypothetical protein yegE; Escherichia coli K-12 ortholog: b2067; Escherichia coli O157:H7 ortholog: z3236.


ensembl_gene_id: c2595
symbol: alkA
gene_biotype: protein_coding
description:
  DNA-3-methyladenine glycosylase II; Escherichia coli K-12 ortholog: b2068; Escherichia coli O157:H7 ortholog: z3237.


ensembl_gene_id: c2596
symbol: yegD
gene_biotype: protein_coding
description:
  Hypothetical chaperone protein yegD; Escherichia coli K-12 ortholog: b2069; Escherichia coli O157:H7 ortholog: z3238.


ensembl_gene_id: c2597
symbol: yegI
gene_biotype: protein_coding
description:
  Hypothetical protein yegI; Escherichia coli K-12 ortholog: b2070; Escherichia coli O157:H7 ortholog: z3239.


ensembl_gene_id: c2598
symbol: yegK
gene_biotype: protein_coding
description:
  Hypothetical protein yegK; Escherichia coli K-12 ortholog: b2072; Escherichia coli O157:H7 ortholog: z3240.


ensembl_gene_id: c2599
symbol: yegL
gene_biotype: protein_coding
description:
  Hypothetical protein yegL; Escherichia coli K-12 ortholog: b2073; Escherichia coli O157:H7 ortholog: z3241.


ensembl_gene_id: c2600
symbol: yegM
gene_biotype: protein_coding
description:
  Hypothetical protein yegM precursor; The MdtABC tripartite complex confers resistance against novobiocin and deoxycholate; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: c2601
symbol: yegN
gene_biotype: protein_coding
description:
  Hypothetical protein yegN; The MdtABC tripartite complex confers resistance against novobiocin and deoxycholate; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtB subfamily.


ensembl_gene_id: c2602
symbol: yegO
gene_biotype: protein_coding
description:
  Hypothetical protein yegO; The MdtABC tripartite complex confers resistance against novobiocin and deoxycholate; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtC subfamily.


ensembl_gene_id: c2603
symbol: yegB
gene_biotype: protein_coding
description:
  Hypothetical transport protein yegB; Escherichia coli K-12 ortholog: b2077; Escherichia coli O157:H7 ortholog: z3246.


ensembl_gene_id: c2604
symbol: baeS
gene_biotype: protein_coding
description:
  Sensor protein baeS; Escherichia coli K-12 ortholog: b2078; Escherichia coli O157:H7 ortholog: z3247.


ensembl_gene_id: c2605
symbol: baeR
gene_biotype: protein_coding
description:
  Transcriptional Regulatory protein baeR; Member of the two-component regulatory system BaeS/BaeR. Activates the mdtABCD operon (By similarity).


ensembl_gene_id: c2606
symbol: yegP
gene_biotype: protein_coding
description:
  Hypothetical protein yegP; Escherichia coli K-12 ortholog: b2080; Escherichia coli O157:H7 ortholog: z3249; Belongs to the UPF0339 family. Duplicated subfamily.


ensembl_gene_id: c2607
symbol: c2607
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 6 to 204 of 204 are 37.61 pct identical to residues 1 to 205 of 205 from GenPept.129 : >emb|CAD02514.1| (AL627273) putative exported protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c2608
symbol: c2608
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 14 to 715 of 715 are 65.00 pct identical to residues 1 to 703 of 703 from GenPept.129 : >gb|AAL21038.1| (AE008795) putative inner membrane protein [Salmonella typhimurium LT2].


ensembl_gene_id: c2609
symbol: c2609
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 237 of 238 are 65.38 pct identical to residues 4 to 237 of 238 from GenPept.129 : >gb|AAL21037.1| (AE008795) putative inner membrane protein [Salmonella typhimurium LT2].


ensembl_gene_id: c2610
symbol: c2610
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 111 to 399 of 404 are 65.39 pct identical to residues 1 to 289 of 294 from GenPept.129 : >emb|CAD02496.1| (AL627273) hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c2611
symbol: yegQ
gene_biotype: protein_coding
description:
  Putative protease yegQ; Escherichia coli K-12 ortholog: b2081; Escherichia coli O157:H7 ortholog: z3250.


ensembl_gene_id: c2613
symbol: yegR
gene_biotype: protein_coding
description:
  Hypothetical protein yegR; Escherichia coli K-12 ortholog: b2085; Escherichia coli O157:H7 ortholog: z3251.


ensembl_gene_id: c2615
symbol: c2615
gene_biotype: protein_coding
description:
  Hypothetical protein; Possible Fusion of Escherichia coli K-12 B2087 and B2091; Residues 1 to 259 of 259 are 99.61 pct identical to residues 1 to 259 of 259 from SwissProt.40 : >sp|P36930|GATR_ECOLI GALACTITOL UTILIZATION OPERON REPRESSOR.


ensembl_gene_id: c2616
symbol: gatD
gene_biotype: protein_coding
description:
  Galactitol-1-phosphate 5-dehydrogenase; Escherichia coli K-12 ortholog: b2091; Escherichia coli O157:H7 ortholog: z3254.


ensembl_gene_id: c2617
symbol: gatC
gene_biotype: protein_coding
description:
  PTS system, galactitol-specific IIC component; EIIC-GAT; Escherichia coli K-12 ortholog: b2092; Escherichia coli O157:H7 ortholog: z3255.


ensembl_gene_id: c2618
symbol: gatB
gene_biotype: protein_coding
description:
  PTS system, galactitol-specific IIB component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The enzyme II complex composed of GatA, GatB and GatC is involved in galactitol transport.


ensembl_gene_id: c2619
symbol: gatA
gene_biotype: protein_coding
description:
  PTS system, galactitol-specific IIA component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II complex composed of GatA, GatB and GatC is involved in galactitol transport.


ensembl_gene_id: c2620
symbol: gatZ
gene_biotype: protein_coding
description:
  Putative tagatose 6-phosphate kinase gatZ; Component of the tagatose-1,6-bisphosphate aldolase GatYZ that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of GatY. When expressed alone, GatZ does not show any aldolase activity. Is involved in the catabolism of galactitol.


ensembl_gene_id: c2621
symbol: gatY
gene_biotype: protein_coding
description:
  Tagatose-bisphosphate aldolase gatY; Catalytic subunit of the tagatose-1,6-bisphosphate aldolase GatYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires GatZ subunit for full activity and stability. Is involved in the catabolism of galactitol.


ensembl_gene_id: c2623
symbol: fbaB
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase class I; Escherichia coli K-12 ortholog: b2097; Escherichia coli O157:H7 ortholog: z3260.


ensembl_gene_id: c2625
symbol: yegT
gene_biotype: protein_coding
description:
  Putative nucleoside transporter yegT; Escherichia coli K-12 ortholog: b2098; Escherichia coli O157:H7 ortholog: z3261.


ensembl_gene_id: c2626
symbol: yegU
gene_biotype: protein_coding
description:
  Hypothetical protein yegU; Escherichia coli K-12 ortholog: b2099; Escherichia coli O157:H7 ortholog: z3262.


ensembl_gene_id: c2627
symbol: yegV
gene_biotype: protein_coding
description:
  Hypothetical sugar kinase yegV; Escherichia coli K-12 ortholog: b2100; Escherichia coli O157:H7 ortholog: z3263; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: c2628
symbol: yegW
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yegW; Escherichia coli K-12 ortholog: b2101; Escherichia coli O157:H7 ortholog: z3264.


ensembl_gene_id: c2629
symbol: yegX
gene_biotype: protein_coding
description:
  Hypothetical protein yegX; Escherichia coli K-12 ortholog: b2102; Escherichia coli O157:H7 ortholog: z3266; Belongs to the glycosyl hydrolase 25 family.


ensembl_gene_id: c2630
symbol: thiD
gene_biotype: protein_coding
description:
  Phosphomethylpyrimidine kinase; Escherichia coli K-12 ortholog: b2103; Escherichia coli O157:H7 ortholog: z3267.


ensembl_gene_id: c2631
symbol: thiM
gene_biotype: protein_coding
description:
  Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family.


ensembl_gene_id: c2632
symbol: yohL
gene_biotype: protein_coding
description:
  Hypothetical protein yohL; Repressor of rcnA expression. Acts by binding specifically to the rcnA promoter in the absence of nickel and cobalt. In the presence of one of these metals, it has a weaker affinity for rcnA promoter (By similarity); Belongs to the FrmR/RcnR family.


ensembl_gene_id: c2634
symbol: yohN
gene_biotype: protein_coding
description:
  Hypothetical protein yohN precursor; Influences nickel and cobalt homeostasis. May act by modulating RcnA-mediated export of these ions to avoid excess efflux (By similarity); Belongs to the RcnB family.


ensembl_gene_id: c2636
symbol: yehB
gene_biotype: protein_coding
description:
  Hypothetical outer membrane usher protein yehB precursor; Escherichia coli K-12 ortholog: b2109; Escherichia coli O157:H7 ortholog: z3277.


ensembl_gene_id: c2637
symbol: yehC
gene_biotype: protein_coding
description:
  Hypothetical fimbrial chaperone yehC precursor; Escherichia coli K-12 ortholog: b2110; Escherichia coli O157:H7 ortholog: z3278.


ensembl_gene_id: c2638
symbol: yehD
gene_biotype: protein_coding
description:
  Hypothetical protein yehD precursor; Escherichia coli K-12 ortholog: b2111; Escherichia coli O157:H7 ortholog: z3279.


ensembl_gene_id: c2640
symbol: yehE
gene_biotype: protein_coding
description:
  Hypothetical protein yehE precursor; Escherichia coli K-12 ortholog: b2112; Escherichia coli O157:H7 ortholog: z3280.


ensembl_gene_id: c2641
symbol: mrp
gene_biotype: protein_coding
description:
  Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: c2642
symbol: metG
gene_biotype: protein_coding
description:
  Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: c2643
symbol: c2643
gene_biotype: protein_coding
description:
  Putative conserved protein; Fusion of Escherichia coli K-12 B2115 and B2116; Residues 313 to 949 of 1262 are 81.12 pct identical to residues 1 to 639 of 645 from MG1655 : b2116.


ensembl_gene_id: c2644
symbol: yehI
gene_biotype: protein_coding
description:
  Hypothetical protein yehI; Escherichia coli K-12 ortholog: b2118; Escherichia coli O157:H7 ortholog: z3287.


ensembl_gene_id: c2647
symbol: c2647
gene_biotype: protein_coding
description:
  yehK protein; Residues 1 to 60 of 61 are 94.99 pct identical to residues 1 to 60 of 105 from GenPept.129 : >gb|AAA60479.1| (U00007) yehK [Escherichia coli].


ensembl_gene_id: c2649
symbol: yehL
gene_biotype: protein_coding
description:
  Hypothetical protein yehL; Escherichia coli K-12 ortholog: b2119; Escherichia coli O157:H7 ortholog: z3291.


ensembl_gene_id: c2650
symbol: yehM
gene_biotype: protein_coding
description:
  Hypothetical protein yehM; Escherichia coli K-12 ortholog: b2120; Escherichia coli O157:H7 ortholog: z3292.


ensembl_gene_id: c2651
symbol: yehP
gene_biotype: protein_coding
description:
  Hypothetical protein yehP; Escherichia coli K-12 ortholog: b2121; Escherichia coli O157:H7 ortholog: z3294.


ensembl_gene_id: c2652
symbol: yehQ
gene_biotype: protein_coding
description:
  Hypothetical protein yehQ; Escherichia coli K-12 ortholog: b2122; Escherichia coli O157:H7 ortholog: z3295.


ensembl_gene_id: c2653
symbol: yehR
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yehR precursor; Escherichia coli K-12 ortholog: b2123; Escherichia coli O157:H7 ortholog: z3300.


ensembl_gene_id: c2654
symbol: yehS
gene_biotype: protein_coding
description:
  Hypothetical protein yehS; Escherichia coli K-12 ortholog: b2124; Escherichia coli O157:H7 ortholog: z3301.


ensembl_gene_id: c2655
symbol: yehT
gene_biotype: protein_coding
description:
  Hypothetical protein yehT; Member of the two-component regulatory system BtsS/BtsR. BtsR regulates expression of btsT by binding to its promoter region.


ensembl_gene_id: c2656
symbol: yehU
gene_biotype: protein_coding
description:
  Hypothetical protein yehU precursor; Member of the two-component regulatory system BtsS/BtsR. BtsS is a high-affinity receptor for extracellular pyruvate that activates BtsR by phosphorylation.


ensembl_gene_id: c2657
symbol: yehV
gene_biotype: protein_coding
description:
  MerR-like regulator A; Escherichia coli K-12 ortholog: b2127; Escherichia coli O157:H7 ortholog: z3376.


ensembl_gene_id: c2658
symbol: yehW
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein yehW; Escherichia coli K-12 ortholog: b2128; Escherichia coli O157:H7 ortholog: z3377.


ensembl_gene_id: c2659
symbol: yehX
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein yehX; Escherichia coli K-12 ortholog: b2129; Escherichia coli O157:H7 ortholog: z3378.


ensembl_gene_id: c2660
symbol: yehY
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein yehY; Escherichia coli K-12 ortholog: b2130; Escherichia coli O157:H7 ortholog: z3379.


ensembl_gene_id: c2661
symbol: yehZ
gene_biotype: protein_coding
description:
  Hypothetical protein yehZ precursor; Escherichia coli K-12 ortholog: b2131; Escherichia coli O157:H7 ortholog: z3380.


ensembl_gene_id: c2663
symbol: bglX
gene_biotype: protein_coding
description:
  Periplasmic beta-glucosidase precursor; Escherichia coli K-12 ortholog: b2132; Escherichia coli O157:H7 ortholog: z3381; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: c2664
symbol: dld
gene_biotype: protein_coding
description:
  D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.


ensembl_gene_id: c2665
symbol: pbpG
gene_biotype: protein_coding
description:
  Penicillin-binding protein 7 precursor; PBP-7; Escherichia coli K-12 ortholog: b2134; Escherichia coli O157:H7 ortholog: z3383; Belongs to the peptidase S11 family.


ensembl_gene_id: c2667
symbol: yohC
gene_biotype: protein_coding
description:
  Hypothetical protein yohC; Escherichia coli K-12 ortholog: b2135; Escherichia coli O157:H7 ortholog: z3384.


ensembl_gene_id: c2668
symbol: yohD
gene_biotype: protein_coding
description:
  Hypothetical protein yohD; Escherichia coli K-12 ortholog: b2136; Escherichia coli O157:H7 ortholog: z3385.


ensembl_gene_id: c2669
symbol: c2669
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 128 of 128 are 97.65 pct identical to residues 126 to 253 of 253 from GenPept.129 : >gb|AAC75198.1| (AE000303) putative oxidoreductase [Escherichia coli K12].


ensembl_gene_id: c2670
symbol: c2670
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 102 of 102 are 99.01 pct identical to residues 1 to 102 of 253 from MG1655 : b2137.


ensembl_gene_id: c2671
symbol: yohG
gene_biotype: protein_coding
description:
  Putative channel/filament proteins; Could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.


ensembl_gene_id: c2672
symbol: yohI
gene_biotype: protein_coding
description:
  Hypothetical protein yohI; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.


ensembl_gene_id: c2673
symbol: yohJ
gene_biotype: protein_coding
description:
  Hypothetical protein yohJ; Escherichia coli K-12 ortholog: b2141; Escherichia coli O157:H7 ortholog: z3396.


ensembl_gene_id: c2674
symbol: yohK
gene_biotype: protein_coding
description:
  Hypothetical protein yohK; Escherichia coli K-12 ortholog: b2142; Escherichia coli O157:H7 ortholog: z3397.


ensembl_gene_id: c2675
symbol: cdd
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.


ensembl_gene_id: c2678
symbol: yeiS
gene_biotype: protein_coding
description:
  Hypothetical protein yeiS; Escherichia coli K-12 ortholog: b2145; Escherichia coli O157:H7 ortholog: z3400.


ensembl_gene_id: c2679
symbol: yeiT
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase yeiT; Escherichia coli K-12 ortholog: b2146; Escherichia coli O157:H7 ortholog: z3401.


ensembl_gene_id: c2680
symbol: yeiA
gene_biotype: protein_coding
description:
  Hypothetical protein yeiA; Escherichia coli K-12 ortholog: b2147; Escherichia coli O157:H7 ortholog: z3402.


ensembl_gene_id: c2682
symbol: mglC
gene_biotype: protein_coding
description:
  Galactoside transport system permease protein mglC; Escherichia coli K-12 ortholog: b2148; Escherichia coli O157:H7 ortholog: z3403; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: c2683
symbol: mglA
gene_biotype: protein_coding
description:
  Galactoside transport ATP-binding protein mglA; Part of the ABC transporter complex MglABC involved in galactose/methyl galactoside import. Responsible for energy coupling to the transport system.


ensembl_gene_id: c2684
symbol: mglB
gene_biotype: protein_coding
description:
  D-galactose-binding periplasmic protein precursor; This protein is involved in the active transport of galactose and glucose. It plays a role in the chemotaxis towards the two sugars by interacting with the trg chemoreceptor (By similarity).


ensembl_gene_id: c2685
symbol: galS
gene_biotype: protein_coding
description:
  Mgl repressor and galactose ultrainduction factor; Escherichia coli K-12 ortholog: b2151; Escherichia coli O157:H7 ortholog: z3407.


ensembl_gene_id: c2687
symbol: yeiB
gene_biotype: protein_coding
description:
  Hypothetical protein yeiB; Escherichia coli K-12 ortholog: b2152; Escherichia coli O157:H7 ortholog: z3408.


ensembl_gene_id: c2688
symbol: folE
gene_biotype: protein_coding
description:
  GTP cyclohydrolase I; Escherichia coli K-12 ortholog: b2153; Escherichia coli O157:H7 ortholog: z3409.


ensembl_gene_id: c2689
symbol: yeiG
gene_biotype: protein_coding
description:
  Hypothetical protein yeiG; Serine hydrolase involved in the detoxification of formaldehyde. Hydrolyzes S-formylglutathione to glutathione and formate (By similarity).


ensembl_gene_id: c2690
symbol: cirA
gene_biotype: protein_coding
description:
  Colicin I receptor precursor; Escherichia coli K-12 ortholog: b2155; Escherichia coli O157:H7 ortholog: z3411.


ensembl_gene_id: c2691
symbol: lysP
gene_biotype: protein_coding
description:
  Lysine-specific permease; Escherichia coli K-12 ortholog: b2156; Escherichia coli O157:H7 ortholog: z3413.


ensembl_gene_id: c2692
symbol: yeiE
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yeiE; Escherichia coli K-12 ortholog: b2157; Escherichia coli O157:H7 ortholog: z3414; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c2693
symbol: yeiH
gene_biotype: protein_coding
description:
  Hypothetical protein yeiH; Escherichia coli K-12 ortholog: b2158; Escherichia coli O157:H7 ortholog: z3415.


ensembl_gene_id: c2694
symbol: nfo
gene_biotype: protein_coding
description:
  Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate.


ensembl_gene_id: c2695
symbol: yeiI
gene_biotype: protein_coding
description:
  Hypothetical sugar kinase yeiI; Escherichia coli K-12 ortholog: b2160; Escherichia coli O157:H7 ortholog: z3417.


ensembl_gene_id: c2696
symbol: yeiK
gene_biotype: protein_coding
description:
  Hypothetical protein yeiK; Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively. Has a clear preference for cytidine over uridine. Strictly specific for ribonucleosides; Belongs to the IUNH family. RihB subfamily.


ensembl_gene_id: c2697
symbol: yeiL
gene_biotype: protein_coding
description:
  Regulatory protein nsr; Escherichia coli K-12 ortholog: b2163; Escherichia coli O157:H7 ortholog: z3420.


ensembl_gene_id: c2698
symbol: yeiM
gene_biotype: protein_coding
description:
  Hypothetical transport protein yeiM; Escherichia coli K-12 ortholog: b2164; Escherichia coli O157:H7 ortholog: z3421; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.


ensembl_gene_id: c2701
symbol: yeiC
gene_biotype: protein_coding
description:
  Hypothetical sugar kinase yeiC; Escherichia coli K-12 ortholog: b2166; Escherichia coli O157:H7 ortholog: z3423.


ensembl_gene_id: c2702
symbol: fruA
gene_biotype: protein_coding
description:
  PTS system, fructose-specific IIBC component; EIIBC-Fru; Escherichia coli K-12 ortholog: b2167; Escherichia coli O157:H7 ortholog: z3425.


ensembl_gene_id: c2703
symbol: fruK
gene_biotype: protein_coding
description:
  1-phosphofructokinase; Escherichia coli K-12 ortholog: b2168; Escherichia coli O157:H7 ortholog: z3426; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: c2704
symbol: fruB
gene_biotype: protein_coding
description:
  PTS system, fructose-specific IIA/FPr component; EIIA-Fru; Escherichia coli K-12 ortholog: b2169; Escherichia coli O157:H7 ortholog: z3427.


ensembl_gene_id: c2706
symbol: yeiO
gene_biotype: protein_coding
description:
  Sugar efflux transporter B; Escherichia coli K-12 ortholog: b2170; Escherichia coli O157:H7 ortholog: z3428.


ensembl_gene_id: c2707
symbol: yeiW
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 62 of 62 are 100.00 pct identical to residues 23 to 84 of 84 from SwissProt.40 : >sp|P58039|YEIW_ECOLI Hypothetical protein yeiW; Belongs to the UPF0153 family.


ensembl_gene_id: c2708
symbol: yeiP
gene_biotype: protein_coding
description:
  Protein yeiP; Escherichia coli K-12 ortholog: b2171; Escherichia coli O157:H7 ortholog: z3430; Belongs to the elongation factor P family.


ensembl_gene_id: c2709
symbol: yeiQ
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase yeiQ; Escherichia coli K-12 ortholog: b2172; Escherichia coli O157:H7 ortholog: z3431; Belongs to the mannitol dehydrogenase family.


ensembl_gene_id: c2710
symbol: yeiR
gene_biotype: protein_coding
description:
  Hypothetical protein yeiR; Escherichia coli K-12 ortholog: b2173; Escherichia coli O157:H7 ortholog: z3432.


ensembl_gene_id: c2711
symbol: yeiU
gene_biotype: protein_coding
description:
  Hypothetical protein yeiU; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family.


ensembl_gene_id: c2712
symbol: spr
gene_biotype: protein_coding
description:
  Lipoprotein spr precursor; A murein DD-endopeptidase with specificity for D-Ala-meso- diaminopimelic acid (mDAP) cross-links. Its role is probably to cleave D-Ala-mDAP cross-links to allow insertion of new glycans and thus cell wall expansion. Functionally redundant with MepM and MepH. Also has weak LD-carboxypeptidase activity on L-mDAP-D-Ala peptide bonds (By similarity).


ensembl_gene_id: c2714
symbol: yejA
gene_biotype: protein_coding
description:
  Hypothetical protein yejA precursor; Escherichia coli K-12 ortholog: b2177; Escherichia coli O157:H7 ortholog: z3436.


ensembl_gene_id: c2715
symbol: yejB
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein yejB; Escherichia coli K-12 ortholog: b2178; Escherichia coli O157:H7 ortholog: z3437.


ensembl_gene_id: c2716
symbol: yejE
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein yejE; Escherichia coli K-12 ortholog: b2179; Escherichia coli O157:H7 ortholog: z3438.


ensembl_gene_id: c2717
symbol: yejF
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein yejF; Escherichia coli K-12 ortholog: b2180; Escherichia coli O157:H7 ortholog: z3439; Belongs to the ABC transporter superfamily.


ensembl_gene_id: c2718
symbol: yejG
gene_biotype: protein_coding
description:
  Hypothetical protein yejG; Escherichia coli K-12 ortholog: b2181; Escherichia coli O157:H7 ortholog: z3440.


ensembl_gene_id: c2719
symbol: bcr
gene_biotype: protein_coding
description:
  Sulfonamide resistance protein; Escherichia coli K-12 ortholog: b2182; Escherichia coli O157:H7 ortholog: z3441.


ensembl_gene_id: c2720
symbol: rsuA
gene_biotype: protein_coding
description:
  Ribosomal small subunit pseudouridine synthase A; Responsible for synthesis of pseudouridine from uracil-516 in 16S ribosomal RNA.


ensembl_gene_id: c2721
symbol: yejH
gene_biotype: protein_coding
description:
  Hypothetical protein yejH; Escherichia coli K-12 ortholog: b2184; Escherichia coli O157:H7 ortholog: z3443.


ensembl_gene_id: c2722
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.


ensembl_gene_id: c2724
symbol: yejK
gene_biotype: protein_coding
description:
  37 kDa nucleoid-associated protein; Escherichia coli K-12 ortholog: b2186; Escherichia coli O157:H7 ortholog: z3445.


ensembl_gene_id: c2725
symbol: yejL
gene_biotype: protein_coding
description:
  Hypothetical protein yejL; Escherichia coli K-12 ortholog: b2187; Escherichia coli O157:H7 ortholog: z3446; Belongs to the UPF0352 family.


ensembl_gene_id: c2726
symbol: yejM
gene_biotype: protein_coding
description:
  Hypothetical protein yejM; Escherichia coli K-12 ortholog: b2188; Escherichia coli O157:H7 ortholog: z3447.


ensembl_gene_id: c2727
symbol: c2727
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 42 of 51 are 97.61 pct identical to residues 575 to 616 of 836 from GenPept.129 : >gb|AAG57327.1|AE005451_8 (AE005451) putative ATP-binding component of a transport system [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2728
symbol: c2728
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 35 of 42 are 100.00 pct identical to residues 536 to 568 of 836 from GenPept.129 : >gb|AAG57327.1|AE005451_8 (AE005451) putative ATP-binding component of a transport system [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2729
symbol: c2729
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 53 to 81 of 129 are 89.65 pct identical to residues 465 to 493 of 836 from GenPept.129 : >gb|AAG57327.1|AE005451_8 (AE005451) putative ATP-binding component of a transport system [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2730
symbol: narP
gene_biotype: protein_coding
description:
  Nitrate/nitrite response regulator protein narP; Escherichia coli K-12 ortholog: b2193; Escherichia coli O157:H7 ortholog: z3450.


ensembl_gene_id: c2732
symbol: dsbE
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein dsbE; Cytochrome c biogenesis protein ccmG; Escherichia coli K-12 ortholog: b2195; Escherichia coli O157:H7 ortholog: z3452.


ensembl_gene_id: c2733
symbol: ccmF
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein ccmF; Escherichia coli K-12 ortholog: b2196; Escherichia coli O157:H7 ortholog: z3453.


ensembl_gene_id: c2734
symbol: ccmE
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein ccmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: c2735
symbol: ccmD
gene_biotype: protein_coding
description:
  Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.


ensembl_gene_id: c2736
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: c2737
symbol: ccmB
gene_biotype: protein_coding
description:
  Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.


ensembl_gene_id: c2738
symbol: ccmA
gene_biotype: protein_coding
description:
  Heme exporter protein A; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.


ensembl_gene_id: c2741
symbol: napB
gene_biotype: protein_coding
description:
  Diheme cytochrome c napB precursor; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.


ensembl_gene_id: c2743
symbol: napH
gene_biotype: protein_coding
description:
  Ferredoxin-type protein napH; Escherichia coli K-12 ortholog: b2204; Escherichia coli O157:H7 ortholog: z3461.


ensembl_gene_id: c2744
symbol: napG
gene_biotype: protein_coding
description:
  Ferredoxin-type protein napG; Required for electron transfer from ubiquinol, via NapC, to the periplasmic nitrate reductase NapAB complex.


ensembl_gene_id: c2745
symbol: napA
gene_biotype: protein_coding
description:
  Periplasmic nitrate reductase precursor; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.


ensembl_gene_id: c2746
symbol: napD
gene_biotype: protein_coding
description:
  NapD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.


ensembl_gene_id: c2747
symbol: napF
gene_biotype: protein_coding
description:
  Ferredoxin-type protein napF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.


ensembl_gene_id: c2750
symbol: eco
gene_biotype: protein_coding
description:
  Ecotin precursor; General inhibitor of pancreatic serine proteases: inhibits chymotrypsin, trypsin, elastases, factor X, kallikrein as well as a variety of other proteases.


ensembl_gene_id: c2751
symbol: yojH
gene_biotype: protein_coding
description:
  Malate:quinone oxidoreductase; Escherichia coli K-12 ortholog: b2210; Escherichia coli O157:H7 ortholog: z3468.


ensembl_gene_id: c2752
symbol: yojI
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein yojI; Escherichia coli K-12 ortholog: b2211; Escherichia coli O157:H7 ortholog: z3469.


ensembl_gene_id: c2753
symbol: alkB
gene_biotype: protein_coding
description:
  Alkylated DNA repair protein alkB; Escherichia coli K-12 ortholog: b2212; Escherichia coli O157:H7 ortholog: z3470.


ensembl_gene_id: c2754
symbol: ada
gene_biotype: protein_coding
description:
  Regulatory protein of adaptative response; Escherichia coli K-12 ortholog: b2213; Escherichia coli O157:H7 ortholog: z3471; bifunctional; Methylated-DNA--protein-cysteine methyltransferase.


ensembl_gene_id: c2755
symbol: c2755
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 8 to 56 of 72 are 77.55 pct identical to residues 1 to 49 of 117 from GenPept.129 : >dbj|BAB47178.1| (AB058960) inverted ada-Golga3 fusion protein [Mus musculus].


ensembl_gene_id: c2756
symbol: yojL
gene_biotype: protein_coding
description:
  Thiamine biosynthesis lipoprotein apbE precursor; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: c2757
symbol: c2757
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 20 to 72 of 364 are 60.37 pct identical to residues 16 to 68 of 69 from GenPept.129 : >gb|AAA32302.1| (J02580) ORF1 [Bacteriophage PA-2].


ensembl_gene_id: c2758
symbol: ompC
gene_biotype: protein_coding
description:
  Outer membrane protein C precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane, including some antibiotics. Variation of the residues in the constriction zone modifies the transverse electric field in the zone, altering antibiotic resistance. Belongs to the Gram-negative porin family.


ensembl_gene_id: c2759
symbol: yojN
gene_biotype: protein_coding
description:
  Putative sensor-like histidine kinase yojN; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.


ensembl_gene_id: c2760
symbol: rcsB
gene_biotype: protein_coding
description:
  Capsular synthesis regulator component B; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. Can function both in an RcsA-dependent or RcsA-independent manner.


ensembl_gene_id: c2761
symbol: rcsC
gene_biotype: protein_coding
description:
  Sensor protein rcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.


ensembl_gene_id: c2763
symbol: atoC
gene_biotype: protein_coding
description:
  Acetoacetate metabolism Regulatory protein atoC; Ornithine/arginine decarboxylase inhibitor; Escherichia coli K-12 ortholog: b2220; Escherichia coli O157:H7 ortholog: z5580.


ensembl_gene_id: c2767
symbol: atoB
gene_biotype: protein_coding
description:
  Acetyl-CoA acetyltransferase; Escherichia coli K-12 ortholog: b2224; Escherichia coli O157:H7 ortholog: z4164; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: c2768
symbol: yfaP
gene_biotype: protein_coding
description:
  Hypothetical protein yfaP precursor; Escherichia coli K-12 ortholog: b2225; Escherichia coli O157:H7 ortholog: z3478.


ensembl_gene_id: c2770
symbol: c2770
gene_biotype: protein_coding
description:
  Putative membrane protein; Escherichia coli K-12 ortholog: b2228; Escherichia coli O157:H7 ortholog: z3481.


ensembl_gene_id: c2771
symbol: yfaT
gene_biotype: protein_coding
description:
  Hypothetical protein yfaT precursor; Escherichia coli K-12 ortholog: b2229; Escherichia coli O157:H7 ortholog: z3482.


ensembl_gene_id: c2772
symbol: yfaA
gene_biotype: protein_coding
description:
  Hypothetical protein yfaA; Escherichia coli K-12 ortholog: b2230; Escherichia coli O157:H7 ortholog: z3483.


ensembl_gene_id: c2773
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: c2774
symbol: ubiG
gene_biotype: protein_coding
description:
  3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: c2775
symbol: yfaL
gene_biotype: protein_coding
description:
  Hypothetical protein yfaL precursor; Escherichia coli K-12 ortholog: b2233; Escherichia coli O157:H7 ortholog: z3487.


ensembl_gene_id: c2776
symbol: nrdA
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase 1 alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: c2777
symbol: nrdB
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase 1 beta chain; Escherichia coli K-12 ortholog: b2235; Escherichia coli O157:H7 ortholog: z3491.


ensembl_gene_id: c2778
symbol: yfaE
gene_biotype: protein_coding
description:
  Hypothetical ferredoxin-like protein yfaE; Escherichia coli K-12 ortholog: b2236; Escherichia coli O157:H7 ortholog: z3492.


ensembl_gene_id: c2780
symbol: glpQ
gene_biotype: protein_coding
description:
  Glycerophosphoryl diester phosphodiesterase, periplasmic precursor; Escherichia coli K-12 ortholog: b2239; Escherichia coli O157:H7 ortholog: z3497.


ensembl_gene_id: c2782
symbol: glpA
gene_biotype: protein_coding
description:
  Anaerobic glycerol-3-phosphate dehydrogenase subunit A; Escherichia coli K-12 ortholog: b2241; Escherichia coli O157:H7 ortholog: z3499; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: c2783
symbol: glpB
gene_biotype: protein_coding
description:
  Anaerobic glycerol-3-phosphate dehydrogenase subunit B; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor; Belongs to the anaerobic G-3-P dehydrogenase subunit B family.


ensembl_gene_id: c2784
symbol: glpC
gene_biotype: protein_coding
description:
  Anaerobic glycerol-3-phosphate dehydrogenase subunit C; G-3-P dehydrogenase; Escherichia coli K-12 ortholog: b2243; Escherichia coli O157:H7 ortholog: z3501.


ensembl_gene_id: c2786
symbol: yfaD
gene_biotype: protein_coding
description:
  Hypothetical protein yfaD; Escherichia coli K-12 ortholog: b2244; Escherichia coli O157:H7 ortholog: z3502.


ensembl_gene_id: c2787
symbol: yfaU
gene_biotype: protein_coding
description:
  Hypothetical protein yfaU; Catalyzes the reversible retro-aldol cleavage of 2-keto-3- deoxy-L-rhamnonate (KDR) to pyruvate and lactaldehyde. Belongs to the HpcH/HpaI aldolase family. KDR aldolase subfamily.


ensembl_gene_id: c2788
symbol: yfaV
gene_biotype: protein_coding
description:
  Hypothetical transport protein yfaV; Escherichia coli K-12 ortholog: b2246; Escherichia coli O157:H7 ortholog: z3504.


ensembl_gene_id: c2789
symbol: yfaW
gene_biotype: protein_coding
description:
  Hypothetical protein yfaW; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).


ensembl_gene_id: c2790
symbol: yfaX
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yfaX; Escherichia coli K-12 ortholog: b2248; Escherichia coli O157:H7 ortholog: z3506.


ensembl_gene_id: c2791
symbol: c2791
gene_biotype: protein_coding
description:
  CinA-like protein; Escherichia coli K-12 ortholog: b2249; Escherichia coli O157:H7 ortholog: z3507; Belongs to the CinA family.


ensembl_gene_id: c2792
symbol: yfaZ
gene_biotype: protein_coding
description:
  Hypothetical protein yfaZ precursor; Escherichia coli K-12 ortholog: b2250; Escherichia coli O157:H7 ortholog: z3508.


ensembl_gene_id: c2793
symbol: yfaO
gene_biotype: protein_coding
description:
  Putative Nudix hydrolase yfaO; Catalyzes the hydrolysis of nucleoside triphosphates, with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP); Belongs to the Nudix hydrolase family. NudI subfamily.


ensembl_gene_id: c2794
symbol: ais
gene_biotype: protein_coding
description:
  Ais protein; Catalyzes the dephosphorylation of heptose(II) of the outer membrane lipopolysaccharide core.


ensembl_gene_id: c2795
symbol: yfbE
gene_biotype: protein_coding
description:
  Hypothetical protein yfbE; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily.


ensembl_gene_id: c2796
symbol: arnC
gene_biotype: protein_coding
description:
  Putative glycosyl transferase yfbF; Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.


ensembl_gene_id: c2797
symbol: yfbG
gene_biotype: protein_coding
description:
  Hypothetical protein yfbG; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.


ensembl_gene_id: c2798
symbol: yfbH
gene_biotype: protein_coding
description:
  Hypothetical protein yfbH; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily.


ensembl_gene_id: c2799
symbol: yfbI
gene_biotype: protein_coding
description:
  Hypothetical protein yfbI; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family.


ensembl_gene_id: c2800
symbol: arnE
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnE family.


ensembl_gene_id: c2801
symbol: yfbJ
gene_biotype: protein_coding
description:
  Hypothetical protein yfbJ; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnF family.


ensembl_gene_id: c2802
symbol: pmrD
gene_biotype: protein_coding
description:
  Polymyxin B resistance protein pmrD; Escherichia coli K-12 ortholog: b2259; Escherichia coli O157:H7 ortholog: z3519.


ensembl_gene_id: c2803
symbol: menE
gene_biotype: protein_coding
description:
  O-succinylbenzoic acid--CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.


ensembl_gene_id: c2804
symbol: menC
gene_biotype: protein_coding
description:
  O-succinylbenzoate-CoA synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).


ensembl_gene_id: c2805
symbol: menB
gene_biotype: protein_coding
description:
  Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).


ensembl_gene_id: c2807
symbol: yfbB
gene_biotype: protein_coding
description:
  Hypothetical protein yfbB; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC).


ensembl_gene_id: c2808
symbol: menD
gene_biotype: protein_coding
description:
  Menaquinone biosynthesis protein menD; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).


ensembl_gene_id: c2809
symbol: menF
gene_biotype: protein_coding
description:
  Menaquinone-specific isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.


ensembl_gene_id: c2810
symbol: elaB
gene_biotype: protein_coding
description:
  ElaB protein; Escherichia coli K-12 ortholog: b2266; Escherichia coli O157:H7 ortholog: z3526; Belongs to the ElaB/YgaM/YqjD family.


ensembl_gene_id: c2812
symbol: elaC
gene_biotype: protein_coding
description:
  Protein elaC; Zinc phosphodiesterase, which has both exoribonuclease and endoribonuclease activities.


ensembl_gene_id: c2816
symbol: yfbM
gene_biotype: protein_coding
description:
  Hypothetical protein yfbM; Escherichia coli K-12 ortholog: b2272; Escherichia coli O157:H7 ortholog: z3533.


ensembl_gene_id: c2817
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: c2818
symbol: nuoM
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain M; Escherichia coli K-12 ortholog: b2277; Escherichia coli O157:H7 ortholog: z3536.


ensembl_gene_id: c2819
symbol: nuoL
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain L; Escherichia coli K-12 ortholog: b2278; Escherichia coli O157:H7 ortholog: z3537.


ensembl_gene_id: c2820
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: c2821
symbol: nuoJ
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity); Belongs to the complex I subunit 6 family.


ensembl_gene_id: c2822
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: c2823
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: c2824
symbol: nuoG
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).


ensembl_gene_id: c2825
symbol: nuoF
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: c2826
symbol: nuoE
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain E; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity); Belongs to the complex I 24 kDa subunit family.


ensembl_gene_id: c2827
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: c2828
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: c2829
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH dehydrogenase I chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: c2830
symbol: lrhA
gene_biotype: protein_coding
description:
  Probable transcriptional regulator lrhA; Escherichia coli K-12 ortholog: b2289; Escherichia coli O157:H7 ortholog: z3549; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c2832
symbol: yfbR
gene_biotype: protein_coding
description:
  Hypothetical protein yfbR; Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates.


ensembl_gene_id: c2833
symbol: yfbS
gene_biotype: protein_coding
description:
  Hypothetical protein yfbS; Escherichia coli K-12 ortholog: b2292; Escherichia coli O157:H7 ortholog: z3553.


ensembl_gene_id: c2835
symbol: yfbU
gene_biotype: protein_coding
description:
  Protein yfbU; Escherichia coli K-12 ortholog: b2294; Escherichia coli O157:H7 ortholog: z3555; Belongs to the UPF0304 family.


ensembl_gene_id: c2836
symbol: yfbV
gene_biotype: protein_coding
description:
  Hypothetical protein yfbV; Escherichia coli K-12 ortholog: b2295; Escherichia coli O157:H7 ortholog: z3556.


ensembl_gene_id: c2838
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: c2840
symbol: pta
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.


ensembl_gene_id: c2841
symbol: yfcC
gene_biotype: protein_coding
description:
  Hypothetical protein yfcC; Escherichia coli K-12 ortholog: b2298; Escherichia coli O157:H7 ortholog: z3560.


ensembl_gene_id: c2842
symbol: yfcD
gene_biotype: protein_coding
description:
  Hypothetical protein yfcD; Escherichia coli K-12 ortholog: b2299; Escherichia coli O157:H7 ortholog: z3561.


ensembl_gene_id: c2843
symbol: yfcE
gene_biotype: protein_coding
description:
  Hypothetical protein yfcE; Shows phosphodiesterase activity; Belongs to the metallophosphoesterase superfamily. YfcE family.


ensembl_gene_id: c2844
symbol: yfcF
gene_biotype: protein_coding
description:
  Hypothetical GST-like protein yfcF; Escherichia coli K-12 ortholog: b2301; Escherichia coli O157:H7 ortholog: z3563.


ensembl_gene_id: c2845
symbol: yfcG
gene_biotype: protein_coding
description:
  Hypothetical GST-like protein yccG; Escherichia coli K-12 ortholog: b2302; Escherichia coli O157:H7 ortholog: z3564; Belongs to the GST superfamily.


ensembl_gene_id: c2846
symbol: folX
gene_biotype: protein_coding
description:
  D-erythro-7,8-dihydroneopterin triphosphate epimerase; Catalyzes the epimerization of carbon 2' of the side chain of 7,8-dihydroneopterin triphosphate (H2NTP) to form 7,8-dihydromonapterin triphosphate (H2MTP). Is required for tetrahydromonapterin biosynthesis.


ensembl_gene_id: c2847
symbol: yfcH
gene_biotype: protein_coding
description:
  Hypothetical protein yfcH; Escherichia coli K-12 ortholog: b2304; Escherichia coli O157:H7 ortholog: z3566.


ensembl_gene_id: c2848
symbol: hisP
gene_biotype: protein_coding
description:
  Histidine transport ATP-binding protein hisP; Escherichia coli K-12 ortholog: b2306; Escherichia coli O157:H7 ortholog: z3568.


ensembl_gene_id: c2849
symbol: hisM
gene_biotype: protein_coding
description:
  Histidine transport system permease protein hisM; Part of the histidine permease ABC transporter. Also part of a lysine/arginine/ornithine transporter. Probably responsible for the translocation of the substrate across the membrane. Required to relay the ATPase-inducing signal from the solute-binding protein to HisP (By similarity).


ensembl_gene_id: c2850
symbol: hisQ
gene_biotype: protein_coding
description:
  Histidine transport system permease protein hisQ; Escherichia coli K-12 ortholog: b2308; Escherichia coli O157:H7 ortholog: z3570.


ensembl_gene_id: c2851
symbol: hisJ
gene_biotype: protein_coding
description:
  Histidine-binding periplasmic protein precursor; Part of the histidine permease ABC transporter. Binds histidine. Interacts with HisQMP and stimulates ATPase activity of HisP, which results in histidine translocation (By similarity).


ensembl_gene_id: c2855
symbol: ubiX
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: c2856
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: c2857
symbol: cvpA
gene_biotype: protein_coding
description:
  Colicin V production protein; DedE protein; Escherichia coli K-12 ortholog: b2313; Escherichia coli O157:H7 ortholog: z3575.


ensembl_gene_id: c2859
symbol: dedD
gene_biotype: protein_coding
description:
  DedD protein; Non-essential cell division protein that could be required for efficient cell constriction.


ensembl_gene_id: c2860
symbol: folC
gene_biotype: protein_coding
description:
  FolC bifunctional protein; Functions in two distinct reactions of the de novo folate biosynthetic pathway. Catalyzes the addition of a glutamate residue to dihydropteroate (7,8-dihydropteroate or H2Pte) to form dihydrofolate (7,8-dihydrofolate monoglutamate or H2Pte-Glu). Also catalyzes successive additions of L-glutamate to tetrahydrofolate or 10- formyltetrahydrofolate or 5,10-methylenetetrahydrofolate, leading to folylpolyglutamate derivatives.


ensembl_gene_id: c2861
symbol: accD
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: c2863
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: c2864
symbol: usg
gene_biotype: protein_coding
description:
  USG-1 protein; Escherichia coli K-12 ortholog: b2319; Escherichia coli O157:H7 ortholog: z3581; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: c2865
symbol: pdxB
gene_biotype: protein_coding
description:
  Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.


ensembl_gene_id: c2866
symbol: div
gene_biotype: protein_coding
description:
  DIV protein; Acts as a regulator of flagellar gene expression by modulating the protein level of the anti sigma factor FlgM upon sensing ring completion or hook elongation. Flk could inhibit FlgM secretion by acting as a braking system for the flagellar-associated type III secretion system.


ensembl_gene_id: c2869
symbol: fabB
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase I; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids (By similarity).


ensembl_gene_id: c2870
symbol: yfcK
gene_biotype: protein_coding
description:
  Hypothetical protein yfcK; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.


ensembl_gene_id: c2871
symbol: yfcL
gene_biotype: protein_coding
description:
  Hypothetical protein yfcL; Escherichia coli K-12 ortholog: b2325; Escherichia coli O157:H7 ortholog: z3588.


ensembl_gene_id: c2872
symbol: yfcM
gene_biotype: protein_coding
description:
  Hypothetical protein yfcM; Escherichia coli K-12 ortholog: b2326; Escherichia coli O157:H7 ortholog: z3589.


ensembl_gene_id: c2873
symbol: yfcA
gene_biotype: protein_coding
description:
  Hypothetical protein yfcA; Escherichia coli K-12 ortholog: b2327; Escherichia coli O157:H7 ortholog: z3590.


ensembl_gene_id: c2874
symbol: mepA
gene_biotype: protein_coding
description:
  Penicillin-insensitive murein endopeptidase precursor; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. Belongs to the peptidase M74 family.


ensembl_gene_id: c2875
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: c2876
symbol: yfcB
gene_biotype: protein_coding
description:
  Hypothetical adenine-specific methylase yfcB; Specifically methylates the 50S ribosomal protein L3 on 'Gln- 150'; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.


ensembl_gene_id: c2877
symbol: yfcN
gene_biotype: protein_coding
description:
  Hypothetical protein yfcN; Escherichia coli K-12 ortholog: b2331; Escherichia coli O157:H7 ortholog: z3594; Belongs to the UPF0115 family.


ensembl_gene_id: c2878
symbol: yfcO
gene_biotype: protein_coding
description:
  Hypothetical protein yfcO precursor; Escherichia coli K-12 ortholog: b2332; Escherichia coli O157:H7 ortholog: z3595.


ensembl_gene_id: c2879
symbol: yfcP
gene_biotype: protein_coding
description:
  Hypothetical fimbrial-like protein yfcP precursor; Escherichia coli K-12 ortholog: b2333; Escherichia coli O157:H7 ortholog: z3596.


ensembl_gene_id: c2880
symbol: yfcQ
gene_biotype: protein_coding
description:
  Hypothetical fimbrial-like protein yfcQ precursor; Escherichia coli K-12 ortholog: b2334; Escherichia coli O157:H7 ortholog: z3597.


ensembl_gene_id: c2881
symbol: yfcR
gene_biotype: protein_coding
description:
  Hypothetical protein yfcR precursor; Escherichia coli K-12 ortholog: b2335; Escherichia coli O157:H7 ortholog: z3598.


ensembl_gene_id: c2882
symbol: yfcS
gene_biotype: protein_coding
description:
  Hypothetical fimbrial chaperone yfcS precursor; Escherichia coli K-12 ortholog: b2336; Escherichia coli O157:H7 ortholog: z3599.


ensembl_gene_id: c2883
symbol: yfcU
gene_biotype: protein_coding
description:
  Putative outer membrane protein; Escherichia coli K-12 ortholog: b2338; Escherichia coli O157:H7 ortholog: z3600.


ensembl_gene_id: c2884
symbol: yfcV
gene_biotype: protein_coding
description:
  Hypothetical fimbrial-like protein yfcV precursor; Escherichia coli K-12 ortholog: b2339; Escherichia coli O157:H7 ortholog: z3601.


ensembl_gene_id: c2885
symbol: c2885
gene_biotype: protein_coding
description:
  Phosphohistidine phosphatase sixA; Escherichia coli K-12 ortholog: b2340; Escherichia coli O157:H7 ortholog: z3603.


ensembl_gene_id: c2886
symbol: fadJ
gene_biotype: protein_coding
description:
  Putative fatty oxidation complex alpha subunit; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: c2887
symbol: fadI
gene_biotype: protein_coding
description:
  Probable 3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.


ensembl_gene_id: c2888
symbol: yfcZ
gene_biotype: protein_coding
description:
  Hypothetical protein yfcZ; Escherichia coli K-12 ortholog: b2343; Escherichia coli O157:H7 ortholog: z3606; Belongs to the UPF0381 family.


ensembl_gene_id: c2889
symbol: fadL
gene_biotype: protein_coding
description:
  Long-chain fatty acid transport protein precursor; Involved in translocation of long-chain fatty acids across the outer membrane. FadL may form a specific channel (By similarity). Belongs to the OmpP1/FadL family.


ensembl_gene_id: c2890
symbol: vacJ
gene_biotype: protein_coding
description:
  VacJ lipoprotein precursor; Escherichia coli K-12 ortholog: b2346; Escherichia coli O157:H7 ortholog: z3610.


ensembl_gene_id: c2892
symbol: yfdC
gene_biotype: protein_coding
description:
  Hypothetical protein yfdC; Escherichia coli K-12 ortholog: b2347; Escherichia coli O157:H7 ortholog: z3611.


ensembl_gene_id: c2895
symbol: c2895
gene_biotype: protein_coding
description:
  yapH homolog; Residues 45 to 1255 of 2387 are 21.57 pct identical to residues 2499 to 3684 of 3705 from GenPept.129 : >emb|CAC89847.1| (AJ414146) putative autotransporter protein [Yersinia pestis].


ensembl_gene_id: c2897
symbol: c2897
gene_biotype: protein_coding
description:
  Type 1 fimbriae Regulatory protein fimB; Escherichia coli K-12 ortholog: b4312; Escherichia coli O157:H7 ortholog: z5910.


ensembl_gene_id: c2899
symbol: dsdC
gene_biotype: protein_coding
description:
  D-serine deaminase activator; Escherichia coli K-12 ortholog: b2364; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c2900
symbol: dsdX
gene_biotype: protein_coding
description:
  DsdX permease; Protein that allows transport of D-serine across the inner membrane, does not transport D-alanine nor probably glycine. Is probably a H(+) symporter, as CCCP inhibits transport. Transports D- serine more efficiently than CycA; Belongs to the GntP permease family.


ensembl_gene_id: c2901
symbol: dsdA
gene_biotype: protein_coding
description:
  D-serine dehydratase; Escherichia coli K-12 ortholog: b2366; Escherichia coli O157:H7 ortholog: z3628.


ensembl_gene_id: c2902
symbol: emrY
gene_biotype: protein_coding
description:
  Multidrug resistance protein Y; Escherichia coli K-12 ortholog: b2367; Escherichia coli O157:H7 ortholog: z3629; Belongs to the major facilitator superfamily.


ensembl_gene_id: c2904
symbol: emrK
gene_biotype: protein_coding
description:
  Multidrug resistance protein K; Escherichia coli K-12 ortholog: b2368; Escherichia coli O157:H7 ortholog: z3630.


ensembl_gene_id: c2905
symbol: evgA
gene_biotype: protein_coding
description:
  Positive transcription regulator evgA; Member of the two-component regulatory system EvgS/EvgA. Regulates the expression of emrKY operon and yfdX. Seems also to control expression of at least one other multidrug efflux operon (By similarity).


ensembl_gene_id: c2906
symbol: evgS
gene_biotype: protein_coding
description:
  Sensor protein evgS precursor; Escherichia coli K-12 ortholog: b2370; Escherichia coli O157:H7 ortholog: z3632.


ensembl_gene_id: c2907
symbol: yfdE
gene_biotype: protein_coding
description:
  Hypothetical protein yfdE; Escherichia coli K-12 ortholog: b2371; Escherichia coli O157:H7 ortholog: z3633; Belongs to the CoA-transferase III family.


ensembl_gene_id: c2908
symbol: yfdV
gene_biotype: protein_coding
description:
  Hypothetical protein yfdV; Escherichia coli K-12 ortholog: b2372; Escherichia coli O157:H7 ortholog: z3635.


ensembl_gene_id: c2909
symbol: c2909
gene_biotype: protein_coding
description:
  Probable oxalyl-CoA decarboxylase; Escherichia coli K-12 ortholog: b2373; Escherichia coli O157:H7 ortholog: z3637; Belongs to the TPP enzyme family.


ensembl_gene_id: c2910
symbol: yfdW
gene_biotype: protein_coding
description:
  Hypothetical protein yfdW; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate (By similarity); Belongs to the CoA-transferase III family. Frc subfamily.


ensembl_gene_id: c2911
symbol: c2911
gene_biotype: protein_coding
description:
  YfdX protein precursor; Escherichia coli K-12 ortholog: b2375; Escherichia coli O157:H7 ortholog: z3640.


ensembl_gene_id: c2912
symbol: ypdI
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein ypdI precursor; Escherichia coli K-12 ortholog: b2376; Escherichia coli O157:H7 ortholog: z3641.


ensembl_gene_id: c2914
symbol: yfdY
gene_biotype: protein_coding
description:
  Hypothetical protein yfdY; Escherichia coli K-12 ortholog: b2377; Escherichia coli O157:H7 ortholog: z3642.


ensembl_gene_id: c2915
symbol: ddg
gene_biotype: protein_coding
description:
  DDG protein; Catalyzes the transfer of palmitoleate from palmitoleoyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (palmitoleoyl)-lipid IV(A); Belongs to the LpxL/LpxM/LpxP family. LpxP subfamily.


ensembl_gene_id: c2916
symbol: yfdZ
gene_biotype: protein_coding
description:
  Hypothetical aminotransferase yfdZ; Escherichia coli K-12 ortholog: b2379; Escherichia coli O157:H7 ortholog: z3644.


ensembl_gene_id: c2919
symbol: ypdA
gene_biotype: protein_coding
description:
  Hypothetical protein ypdA; Escherichia coli K-12 ortholog: b2380; Escherichia coli O157:H7 ortholog: z3645.


ensembl_gene_id: c2920
symbol: ypdB
gene_biotype: protein_coding
description:
  Hypothetical protein ypdB; Member of the two-component regulatory system YpdA/YpdB. YpdB regulates expression of yhjX by binding to its promoter region.


ensembl_gene_id: c2921
symbol: ypdC
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ypdC; Escherichia coli K-12 ortholog: b2382; Escherichia coli O157:H7 ortholog: z3647.


ensembl_gene_id: c2922
symbol: fryA
gene_biotype: protein_coding
description:
  Putative phosphoenolpyruvate-protein phosphotransferase ypdD; Multifunctional protein that includes general (non sugar- specific) and sugar-specific components of the phosphoenolpyruvate- dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II FryABC PTS system is involved in fructose transport.


ensembl_gene_id: c2923
symbol: ypdE
gene_biotype: protein_coding
description:
  Hypothetical protein ypdE; Escherichia coli K-12 ortholog: b2384; Escherichia coli O157:H7 ortholog: z3649.


ensembl_gene_id: c2924
symbol: c2924
gene_biotype: protein_coding
description:
  Putative peptidase ypdF; Escherichia coli K-12 ortholog: b2385; Escherichia coli O157:H7 ortholog: z3651.


ensembl_gene_id: c2925
symbol: fryC
gene_biotype: protein_coding
description:
  Putative PTS system IIC component ypdG; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.


ensembl_gene_id: c2926
symbol: fryB
gene_biotype: protein_coding
description:
  Putative PTS system IIB component ypdH; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II FryABC PTS system is involved in fructose transport.


ensembl_gene_id: c2927
symbol: glk
gene_biotype: protein_coding
description:
  Glucokinase; Not highly important in E.coli as glucose is transported into the cell by the PTS system already as glucose 6-phosphate.


ensembl_gene_id: c2928
symbol: yfeO
gene_biotype: protein_coding
description:
  Hypothetical protein yfeO; Escherichia coli K-12 ortholog: b2389; Escherichia coli O157:H7 ortholog: z3655.


ensembl_gene_id: c2929
symbol: ypeC
gene_biotype: protein_coding
description:
  Hypothetical protein ypeC precursor; Escherichia coli K-12 ortholog: b2390; Escherichia coli O157:H7 ortholog: z3656.


ensembl_gene_id: c2930
symbol: c2930
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Escherichia coli K-12 ortholog: b2391; Escherichia coli O157:H7 ortholog: z3657.


ensembl_gene_id: c2931
symbol: mntH
gene_biotype: protein_coding
description:
  Manganese transport protein mntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.


ensembl_gene_id: c2932
symbol: nupC
gene_biotype: protein_coding
description:
  Nucleoside permease nupC; Transports nucleosides with a high affinity except guanosine and deoxyguanosine. Driven by a proton motive force. Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.


ensembl_gene_id: c2933
symbol: yfeA
gene_biotype: protein_coding
description:
  Hypothetical protein yfeA; Escherichia coli K-12 ortholog: b2395; Escherichia coli O157:H7 ortholog: z3660.


ensembl_gene_id: c2934
symbol: yfeC
gene_biotype: protein_coding
description:
  Hypothetical protein yfeC; Escherichia coli K-12 ortholog: b2398; Escherichia coli O157:H7 ortholog: z3662; To E.coli YfiI and P.aeruginosa RluD.


ensembl_gene_id: c2935
symbol: yfeD
gene_biotype: protein_coding
description:
  Hypothetical protein yfeD; Escherichia coli K-12 ortholog: b2399; Escherichia coli O157:H7 ortholog: z3663.


ensembl_gene_id: c2936
symbol: gltX
gene_biotype: protein_coding
description:
  Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).


ensembl_gene_id: c2937
symbol: xapR
gene_biotype: protein_coding
description:
  Xanthosine operon Regulatory protein; Escherichia coli K-12 ortholog: b2405; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c2938
symbol: c2938
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 52 of 52 are 40.38 pct identical to residues 1 to 52 of 53 from GenPept.129 : >dbj|BAB07525.1| (AP001520) BH3806; unknown [Bacillus halodurans].


ensembl_gene_id: c2939
symbol: xapB
gene_biotype: protein_coding
description:
  Xanthosine transporter; Escherichia coli K-12 ortholog: b2406; Escherichia coli O157:H7 ortholog: z4309.


ensembl_gene_id: c2940
symbol: xapA
gene_biotype: protein_coding
description:
  Xanthosine phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: c2942
symbol: yfeR
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yfeR; Escherichia coli K-12 ortholog: b2409; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c2943
symbol: yfeH
gene_biotype: protein_coding
description:
  Hypothetical protein yfeH; Escherichia coli K-12 ortholog: b2410; Escherichia coli O157:H7 ortholog: z3675.


ensembl_gene_id: c2945
symbol: lig
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: c2946
symbol: zipA
gene_biotype: protein_coding
description:
  Cell division protein zipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.


ensembl_gene_id: c2947
symbol: cysZ
gene_biotype: protein_coding
description:
  CysZ protein; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family.


ensembl_gene_id: c2948
symbol: cysK
gene_biotype: protein_coding
description:
  Cysteine synthase A; Escherichia coli K-12 ortholog: b2414; Escherichia coli O157:H7 ortholog: z3680; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: c2950
symbol: ptsH
gene_biotype: protein_coding
description:
  Phosphocarrier protein HPr; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein HPr by enzyme I. Phospho-HPr then transfers it to the PTS EIIA domain.


ensembl_gene_id: c2951
symbol: ptsI
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; Escherichia coli K-12 ortholog: b2416; Escherichia coli O157:H7 ortholog: z3682.


ensembl_gene_id: c2952
symbol: crr
gene_biotype: protein_coding
description:
  PTS system, glucose-specific IIA component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II complex composed of PtsG and Crr is involved in glucose transport.


ensembl_gene_id: c2953
symbol: pdxK
gene_biotype: protein_coding
description:
  Pyridoxine kinase; B6-vitamer kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxine (PN), pyridoxal (PL), and pyridoxamine (PM), forming their respective 5'-phosphorylated esters, i.e. PNP, PLP and PMP.


ensembl_gene_id: c2954
symbol: yfeK
gene_biotype: protein_coding
description:
  Hypothetical protein yfeK precursor; Escherichia coli K-12 ortholog: b2419; Escherichia coli O157:H7 ortholog: z3685.


ensembl_gene_id: c2955
symbol: cysM
gene_biotype: protein_coding
description:
  Cysteine synthase B; Escherichia coli K-12 ortholog: b2421; Escherichia coli O157:H7 ortholog: z3686; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: c2956
symbol: cysA
gene_biotype: protein_coding
description:
  Sulfate transport ATP-binding protein cysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: c2957
symbol: cysW
gene_biotype: protein_coding
description:
  Putative conserved protein; Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: c2958
symbol: cysU
gene_biotype: protein_coding
description:
  Sulfate transport system permease protein cysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: c2959
symbol: cysP
gene_biotype: protein_coding
description:
  Thiosulfate-binding protein precursor; Escherichia coli K-12 ortholog: b2425; Escherichia coli O157:H7 ortholog: z3690.


ensembl_gene_id: c2960
symbol: ucpA
gene_biotype: protein_coding
description:
  Oxidoreductase ucpA; Escherichia coli K-12 ortholog: b2426; Escherichia coli O157:H7 ortholog: z3691.


ensembl_gene_id: c2961
symbol: yfeU
gene_biotype: protein_coding
description:
  Protein yfeU; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the GCKR-like family. MurNAc-6-P etherase subfamily.


ensembl_gene_id: c2962
symbol: murP
gene_biotype: protein_coding
description:
  Putative PTS system IIBC component yfeV; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This system is involved in N-acetylmuramic acid (MurNAc) transport, yielding cytoplasmic MurNAc-6-P. Is also able to take up anhydro-N-acetylmuramic acid (anhMurNAc), but cannot phosphorylate the carbon 6, probably because of the 1,6-anhydro ring.


ensembl_gene_id: c2965
symbol: yfeX
gene_biotype: protein_coding
description:
  Hypothetical protein yfeX; Escherichia coli K-12 ortholog: b2431; Escherichia coli O157:H7 ortholog: z3696.


ensembl_gene_id: c2966
symbol: yfeY
gene_biotype: protein_coding
description:
  Hypothetical protein yfeY precursor; Escherichia coli K-12 ortholog: b2432; Escherichia coli O157:H7 ortholog: z3697.


ensembl_gene_id: c2967
symbol: yfeZ
gene_biotype: protein_coding
description:
  Hypothetical protein yfeZ; Escherichia coli K-12 ortholog: b2433; Escherichia coli O157:H7 ortholog: z3698.


ensembl_gene_id: c2968
symbol: ypeA
gene_biotype: protein_coding
description:
  Hypothetical protein ypeA; Escherichia coli K-12 ortholog: b2434; Escherichia coli O157:H7 ortholog: z3699; Belongs to the acetyltransferase family. YpeA subfamily.


ensembl_gene_id: c2969
symbol: amiA
gene_biotype: protein_coding
description:
  Probable N-acetylmuramoyl-L-alanine amidase amiA precursor; Escherichia coli K-12 ortholog: b2435; Escherichia coli O157:H7 ortholog: z3700.


ensembl_gene_id: c2970
symbol: hemF
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: c2971
symbol: yfeG
gene_biotype: protein_coding
description:
  Ethanolamine operon Regulatory protein; Escherichia coli K-12 ortholog: b2437; Escherichia coli O157:H7 ortholog: z3702.


ensembl_gene_id: c2972
symbol: c2972
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutK precursor; Escherichia coli K-12 ortholog: b2438; Escherichia coli O157:H7 ortholog: z3703.


ensembl_gene_id: c2973
symbol: c2973
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutL; Escherichia coli K-12 ortholog: b2439; Escherichia coli O157:H7 ortholog: z3704.


ensembl_gene_id: c2974
symbol: eutC
gene_biotype: protein_coding
description:
  Ethanolamine ammonia-lyase light chain; Escherichia coli K-12 ortholog: b2440; Escherichia coli O157:H7 ortholog: z3705; Belongs to the EutC family.


ensembl_gene_id: c2975
symbol: eutB
gene_biotype: protein_coding
description:
  Ethanolamine ammonia-lyase heavy chain; Escherichia coli K-12 ortholog: b2441; Escherichia coli O157:H7 ortholog: z3706.


ensembl_gene_id: c2976
symbol: c2976
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutA; Escherichia coli K-12 ortholog: b2451; Escherichia coli O157:H7 ortholog: z3707.


ensembl_gene_id: c2977
symbol: eutH
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutH; Putative ethanolamine transporter; Escherichia coli K-12 ortholog: b2452; Escherichia coli O157:H7 ortholog: z3708.


ensembl_gene_id: c2978
symbol: eutG
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutG; Escherichia coli K-12 ortholog: b2453; Escherichia coli O157:H7 ortholog: z3709.


ensembl_gene_id: c2979
symbol: eutJ
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutJ; Escherichia coli K-12 ortholog: b2454; Escherichia coli O157:H7 ortholog: z3710.


ensembl_gene_id: c2980
symbol: eutE
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutE; Escherichia coli K-12 ortholog: b2455; Escherichia coli O157:H7 ortholog: z3711.


ensembl_gene_id: c2981
symbol: cchB
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutN; May be involved in the formation of a specific microcompartment in the cell in which the metabolism of potentially toxic by-products takes place; To cyanobacterial carbon dioxide concentrating mechanism protein CcmL.


ensembl_gene_id: c2982
symbol: cchA
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutM precursor; May be involved in the formation of a specific microcompartment in the cell in which the metabolism of potentially toxic by-products takes place; Belongs to the bacterial microcompartments protein family.


ensembl_gene_id: c2983
symbol: eutI
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutD; Escherichia coli K-12 ortholog: b2458; Escherichia coli O157:H7 ortholog: z3714.


ensembl_gene_id: c2985
symbol: c2985
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutQ; Escherichia coli K-12 ortholog: b2460; Escherichia coli O157:H7 ortholog: z3716.


ensembl_gene_id: c2986
symbol: c2986
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutP; Escherichia coli K-12 ortholog: b2461; Escherichia coli O157:H7 ortholog: z3717; Belongs to the EutP/PduV family.


ensembl_gene_id: c2987
symbol: eutS
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein eutS; May be involved in the formation of a specific microcompartment in the cell in which the metabolism of potentially toxic by-products takes place; Belongs to the EutS/PduU family.


ensembl_gene_id: c2988
symbol: c2988
gene_biotype: protein_coding
description:
  NADP-dependent malic enzyme; Escherichia coli K-12 ortholog: b2463; Escherichia coli O157:H7 ortholog: z3719.


ensembl_gene_id: c2989
symbol: talA
gene_biotype: protein_coding
description:
  Transaldolase A; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.


ensembl_gene_id: c2990
symbol: tktB
gene_biotype: protein_coding
description:
  Transketolase 2; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: c2991
symbol: ypfG
gene_biotype: protein_coding
description:
  Hypothetical protein ypfG precursor; Escherichia coli K-12 ortholog: b2466; Escherichia coli O157:H7 ortholog: z3722.


ensembl_gene_id: c2994
symbol: yffH
gene_biotype: protein_coding
description:
  Hypothetical protein yffH; Nucleoside diphosphate sugar hydrolase that hydrolyzes GDP- mannose as its preferred substrate, yielding GMP and mannose-1- phosphate.


ensembl_gene_id: c2996
symbol: narQ
gene_biotype: protein_coding
description:
  Nitrate/nitrite sensor protein narQ; Escherichia coli K-12 ortholog: b2469; Escherichia coli O157:H7 ortholog: z3726.


ensembl_gene_id: c2997
symbol: acrD
gene_biotype: protein_coding
description:
  Probable aminoglycoside efflux pump; Acriflavine resistance protein D; Escherichia coli K-12 ortholog: b2470; Escherichia coli O157:H7 ortholog: z3727.


ensembl_gene_id: c2998
symbol: yffB
gene_biotype: protein_coding
description:
  Protein yffB; Escherichia coli K-12 ortholog: b2471; Escherichia coli O157:H7 ortholog: z3729; Belongs to the ArsC family.


ensembl_gene_id: c2999
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: c3001
symbol: ypfH
gene_biotype: protein_coding
description:
  Hypothetical protein ypfH; Escherichia coli K-12 ortholog: b2473; Escherichia coli O157:H7 ortholog: z3732.


ensembl_gene_id: c3002
symbol: ypfI
gene_biotype: protein_coding
description:
  Hypothetical protein ypfI; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).


ensembl_gene_id: c3003
symbol: ypfJ
gene_biotype: protein_coding
description:
  Hypothetical protein ypfJ; Escherichia coli K-12 ortholog: b2475; Escherichia coli O157:H7 ortholog: z3734.


ensembl_gene_id: c3004
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole-succinocarboxamide synthase; Escherichia coli K-12 ortholog: b2476; Escherichia coli O157:H7 ortholog: z3735.


ensembl_gene_id: c3005
symbol: nlpB
gene_biotype: protein_coding
description:
  Lipoprotein-34 precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: c3006
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: c3007
symbol: gcvR
gene_biotype: protein_coding
description:
  Glycine cleavage system transcriptional repressor; Gcv operon repressor; Escherichia coli K-12 ortholog: b2479; Escherichia coli O157:H7 ortholog: z3738.


ensembl_gene_id: c3008
symbol: bcp
gene_biotype: protein_coding
description:
  Bacterioferritin comigratory protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events; Belongs to the peroxiredoxin family. BCP/PrxQ subfamily.


ensembl_gene_id: c3009
symbol: perM
gene_biotype: protein_coding
description:
  Putative permease perM; Escherichia coli K-12 ortholog: b2493; Escherichia coli O157:H7 ortholog: z3755.


ensembl_gene_id: c3011
symbol: yfgC
gene_biotype: protein_coding
description:
  Hypothetical protein yfgC precursor; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.


ensembl_gene_id: c3013
symbol: yfgE
gene_biotype: protein_coding
description:
  Hypothetical protein yfgE; Mediates the interaction of DNA replication initiator protein DnaA with DNA polymerase subunit beta sliding clamp (dnaN). Stimulates hydrolysis of ATP-DnaA to ADP-DnaA, rendering DnaA inactive for reinitiation, a process called regulatory inhibition of DnaA or RIDA (By similarity); Belongs to the DnaA family. HdA subfamily.


ensembl_gene_id: c3014
symbol: uraA
gene_biotype: protein_coding
description:
  Uracil transporter; Escherichia coli K-12 ortholog: b2497; Escherichia coli O157:H7 ortholog: z3760.


ensembl_gene_id: c3015
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: c3017
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Escherichia coli K-12 ortholog: b2499; Escherichia coli O157:H7 ortholog: z3762; Belongs to the AIR synthase family.


ensembl_gene_id: c3018
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: c3019
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP); Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: c3020
symbol: ppx
gene_biotype: protein_coding
description:
  Exopolyphosphatase; Degradation of inorganic polyphosphates (polyP). Releases orthophosphate processively from the ends of the polyP chain.


ensembl_gene_id: c3021
symbol: yfgF
gene_biotype: protein_coding
description:
  Hypothetical protein yfgF; Escherichia coli K-12 ortholog: b2503; Escherichia coli O157:H7 ortholog: z3766.


ensembl_gene_id: c3023
symbol: c3023
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 63 of 96 are 69.35 pct identical to residues 1 to 62 of 86 from GenPept.129 : >gb|AAL21399.1| (AE008813) putative inner membrane protein [Salmonella typhimurium LT2].


ensembl_gene_id: c3024
symbol: yfgH
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yfgH precursor; Escherichia coli K-12 ortholog: b2505; Escherichia coli O157:H7 ortholog: z3769.


ensembl_gene_id: c3025
symbol: yfgI
gene_biotype: protein_coding
description:
  Hypothetical protein yfgI; Escherichia coli K-12 ortholog: b2506; Escherichia coli O157:H7 ortholog: z3770.


ensembl_gene_id: c3027
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: c3028
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: c3029
symbol: c3029
gene_biotype: protein_coding
description:
  RatA homolog; Residues 9 to 2408 of 2683 are 42.82 pct identical to residues 13 to 2434 of 2435 from GenPept.129 : >gb|AAL21408.1| (AE008813) putative outer membrane protein [Salmonella typhimurium LT2].


ensembl_gene_id: c3030
symbol: c3030
gene_biotype: protein_coding
description:
  SinI homolog; Residues 1 to 325 of 325 are 46.24 pct identical to residues 1 to 319 of 319 from GenPept.129 : >gb|AAL21410.1| (AE008814) putative outer membrane protein [Salmonella typhimurium LT2].


ensembl_gene_id: c3031
symbol: c3031
gene_biotype: protein_coding
description:
  SinH homolog; Residues 11 to 735 of 735 are 72.77 pct identical to residues 1 to 730 of 730 from GenPept.129 : >gb|AAL21411.1| (AE008814) Similar to Escherichia coli intimin and Y. pestis invasin proteins [Salmonella typhimurium LT2].


ensembl_gene_id: c3033
symbol: der
gene_biotype: protein_coding
description:
  Probable GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: c3034
symbol: yfgL
gene_biotype: protein_coding
description:
  Hypothetical protein yfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: c3035
symbol: yfgM
gene_biotype: protein_coding
description:
  Hypothetical protein yfgM; Escherichia coli K-12 ortholog: b2513; Escherichia coli O157:H7 ortholog: z3776.


ensembl_gene_id: c3036
symbol: hisS
gene_biotype: protein_coding
description:
  Histidyl-tRNA synthetase; Escherichia coli K-12 ortholog: b2514; Escherichia coli O157:H7 ortholog: z3777.


ensembl_gene_id: c3037
symbol: gcpE
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: c3038
symbol: yfgA
gene_biotype: protein_coding
description:
  Hypothetical protein yfgA; Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis.


ensembl_gene_id: c3039
symbol: yfgB
gene_biotype: protein_coding
description:
  Hypothetical protein yfgB; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: c3041
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: c3042
symbol: pbpC
gene_biotype: protein_coding
description:
  Penicillin-binding protein 1C; PBP-1c; Escherichia coli K-12 ortholog: b2519; Escherichia coli O157:H7 ortholog: z3786.


ensembl_gene_id: c3044
symbol: sseA
gene_biotype: protein_coding
description:
  3-mercaptopyruvate sulfurtransferase; Escherichia coli K-12 ortholog: b2521; Escherichia coli O157:H7 ortholog: z3788.


ensembl_gene_id: c3049
symbol: yfhJ
gene_biotype: protein_coding
description:
  Hypothetical protein yfhJ; May function as iron donor in the assembly of iron-sulfur clusters; Belongs to the IscX family.


ensembl_gene_id: c3050
symbol: fdx
gene_biotype: protein_coding
description:
  Ferredoxin, 2Fe-2S; Escherichia coli K-12 ortholog: b2525; Escherichia coli O157:H7 ortholog: z3792.


ensembl_gene_id: c3051
symbol: hscA
gene_biotype: protein_coding
description:
  Chaperone protein hscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Involved in the maturation of IscU.


ensembl_gene_id: c3052
symbol: yfhE
gene_biotype: protein_coding
description:
  Chaperone protein hscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA (By similarity); Belongs to the HscB family.


ensembl_gene_id: c3053
symbol: yfhF
gene_biotype: protein_coding
description:
  Protein yfhF; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system TrxA/TrxB (By similarity).


ensembl_gene_id: c3055
symbol: iscU
gene_biotype: protein_coding
description:
  NifU-like protein; A scaffold on which IscS assembles Fe-S clusters. Subsequently gives the nascent cluster to other proteins. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters (By similarity). Belongs to the NifU family.


ensembl_gene_id: c3056
symbol: yfhO
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur and selenium atoms from cysteine and selenocysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. Also functions as a selenium delivery protein in the pathway for the biosynthesis of selenophosphate; Belongs to the class-V pyridoxal-phosphate-dependent aminotransfer [...]


ensembl_gene_id: c3057
symbol: yfhP
gene_biotype: protein_coding
description:
  Hypothetical protein yfhP; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins.


ensembl_gene_id: c3058
symbol: yfhQ
gene_biotype: protein_coding
description:
  Hypothetical tRNA/rRNA methyltransferase yfhQ; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: c3060
symbol: yfhR
gene_biotype: protein_coding
description:
  Hypothetical protein yfhR; Escherichia coli K-12 ortholog: b2534; Escherichia coli O157:H7 ortholog: z3802.


ensembl_gene_id: c3061
symbol: csiE
gene_biotype: protein_coding
description:
  Stationary phase inducible protein csiE; Escherichia coli K-12 ortholog: b2535; Escherichia coli O157:H7 ortholog: z3804.


ensembl_gene_id: c3062
symbol: hcaT
gene_biotype: protein_coding
description:
  Probable 3-phenylpropionic acid transporter; Escherichia coli K-12 ortholog: b2536; Escherichia coli O157:H7 ortholog: z3807.


ensembl_gene_id: c3065
symbol: yphA
gene_biotype: protein_coding
description:
  Hypothetical protein yphA; Escherichia coli K-12 ortholog: b2543; Escherichia coli O157:H7 ortholog: z3815.


ensembl_gene_id: c3066
symbol: yphB
gene_biotype: protein_coding
description:
  Hypothetical protein yphB; Escherichia coli K-12 ortholog: b2544; Escherichia coli O157:H7 ortholog: z3816.


ensembl_gene_id: c3067
symbol: yphC
gene_biotype: protein_coding
description:
  Hypothetical zinc-type alcohol dehydrogenase-like protein yphC; Escherichia coli K-12 ortholog: b2545; Escherichia coli O157:H7 ortholog: z3817.


ensembl_gene_id: c3068
symbol: yphD
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein yphD; Escherichia coli K-12 ortholog: b2546; Escherichia coli O157:H7 ortholog: z3819; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: c3069
symbol: yphE
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein yphE; Escherichia coli K-12 ortholog: b2547; Escherichia coli O157:H7 ortholog: z3821.


ensembl_gene_id: c3070
symbol: yphF
gene_biotype: protein_coding
description:
  ABC transporter Periplasmic binding protein yphF precursor; Escherichia coli K-12 ortholog: b2548; Escherichia coli O157:H7 ortholog: z3823.


ensembl_gene_id: c3071
symbol: yphG
gene_biotype: protein_coding
description:
  Hypothetical protein yphG; Escherichia coli K-12 ortholog: b2549; Escherichia coli O157:H7 ortholog: z3825.


ensembl_gene_id: c3072
symbol: yphH
gene_biotype: protein_coding
description:
  Hypothetical protein yphH; Escherichia coli K-12 ortholog: b2550; Escherichia coli O157:H7 ortholog: z3826.


ensembl_gene_id: c3073
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: c3075
symbol: hmpA
gene_biotype: protein_coding
description:
  Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.


ensembl_gene_id: c3076
symbol: glnB
gene_biotype: protein_coding
description:
  Nitrogen Regulatory protein P-II 1; P-II indirectly controls the transcription of the glutamine synthetase gene (GlnA). P-II prevents NR-II-catalyzed conversion of NR- I to NR-I-phosphate, the transcriptional activator of GlnA. When P-II is uridylylated to P-II-UMP, these events are reversed. When the ratio of Gln to 2-ketoglutarate decreases, P-II is uridylylated to P-II-UMP, which causes the deadenylation of glutamine synthetase by GlnE, so activating the enzyme (By similarity).


ensembl_gene_id: c3077
symbol: yfhA
gene_biotype: protein_coding
description:
  Hypothetical protein yfHa; ORF-2; Escherichia coli K-12 ortholog: b2554; Escherichia coli O157:H7 ortholog: z3830.


ensembl_gene_id: c3078
symbol: yfhG
gene_biotype: protein_coding
description:
  Hypothetical protein yfhG; Escherichia coli K-12 ortholog: b2555; Escherichia coli O157:H7 ortholog: z3831.


ensembl_gene_id: c3079
symbol: yfhK
gene_biotype: protein_coding
description:
  Putative sensor-like histidine kinase yfhK; Escherichia coli K-12 ortholog: b2556; Escherichia coli O157:H7 ortholog: z3833.


ensembl_gene_id: c3080
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: c3081
symbol: yfhD
gene_biotype: protein_coding
description:
  Hypothetical protein yfhD; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.


ensembl_gene_id: c3082
symbol: yfhC
gene_biotype: protein_coding
description:
  Hypothetical protein yfhC; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: c3083
symbol: yfhB
gene_biotype: protein_coding
description:
  Hypothetical protein yfhB; Escherichia coli K-12 ortholog: b2560; Escherichia coli O157:H7 ortholog: z3840.


ensembl_gene_id: c3085
symbol: yfhH
gene_biotype: protein_coding
description:
  Hypothetical protein yfhH; Escherichia coli K-12 ortholog: b2561; Escherichia coli O157:H7 ortholog: z3841.


ensembl_gene_id: c3086
symbol: yfhL
gene_biotype: protein_coding
description:
  Putative ferredoxin-like protein yfhL; Escherichia coli K-12 ortholog: b2562; Escherichia coli O157:H7 ortholog: z3842.


ensembl_gene_id: c3087
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: c3088
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthetic protein pdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: c3089
symbol: recO
gene_biotype: protein_coding
description:
  DNA repair protein recO; Involved in DNA repair and RecF pathway recombination. Belongs to the RecO family.


ensembl_gene_id: c3090
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: c3091
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: c3092
symbol: lepB
gene_biotype: protein_coding
description:
  Signal peptidase I; Escherichia coli K-12 ortholog: b2568; Escherichia coli O157:H7 ortholog: z3850; Belongs to the peptidase S26 family.


ensembl_gene_id: c3093
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein lepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: c3094
symbol: rseC
gene_biotype: protein_coding
description:
  Sigma-E factor Regulatory protein rseC; Escherichia coli K-12 ortholog: b2570; Escherichia coli O157:H7 ortholog: z3852.


ensembl_gene_id: c3095
symbol: rseB
gene_biotype: protein_coding
description:
  Sigma-E factor Regulatory protein rseB precursor; Escherichia coli K-12 ortholog: b2571; Escherichia coli O157:H7 ortholog: z3853.


ensembl_gene_id: c3096
symbol: rseA
gene_biotype: protein_coding
description:
  Sigma-E factor negative Regulatory protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic p [...]


ensembl_gene_id: c3097
symbol: rpoE
gene_biotype: protein_coding
description:
  RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase (RNAP) to specific initiation sites and are then released. Extracytoplasmic function (ECF) sigma-E controls the envelope stress response, responding to periplasmic protein stress, increased levels of periplasmic lipopolysaccharide (LPS) as well as heat shock and oxidative stress; it controls protein processing in the extracytoplasmic compartment (By similarity).


ensembl_gene_id: c3099
symbol: yfiC
gene_biotype: protein_coding
description:
  Hypothetical protein yfiC; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).


ensembl_gene_id: c3100
symbol: srmB
gene_biotype: protein_coding
description:
  ATP-dependent RNA helicase srmB; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily.


ensembl_gene_id: c3101
symbol: yfiE
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yfiE; Escherichia coli K-12 ortholog: b2577; Escherichia coli O157:H7 ortholog: z3860; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c3102
symbol: yfiK
gene_biotype: protein_coding
description:
  Hypothetical protein yfiK; Exporter of O-acetylserine (OAS) and cysteine; Belongs to the Rht family.


ensembl_gene_id: c3105
symbol: ung
gene_biotype: protein_coding
description:
  Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.


ensembl_gene_id: c3106
symbol: yfiF
gene_biotype: protein_coding
description:
  Hypothetical tRNA/rRNA methyltransferase yfiF; Escherichia coli K-12 ortholog: b2581; Escherichia coli O157:H7 ortholog: z3865; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: c3107
symbol: trxC
gene_biotype: protein_coding
description:
  Thioredoxin 2; Efficient electron donor for the essential enzyme ribonucleotide reductase. Is also able to reduce the interchain disulfide bridges of insulin (By similarity); Belongs to the thioredoxin family.


ensembl_gene_id: c3108
symbol: yfiP
gene_biotype: protein_coding
description:
  Hypothetical protein yfiP; Escherichia coli K-12 ortholog: b2583; Escherichia coli O157:H7 ortholog: z3868.


ensembl_gene_id: c3109
symbol: yfiQ
gene_biotype: protein_coding
description:
  Hypothetical protein yfiQ; Escherichia coli K-12 ortholog: b2584; Escherichia coli O157:H7 ortholog: z3869.


ensembl_gene_id: c3110
symbol: pssA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--serine O-phosphatidyltransferase; Escherichia coli K-12 ortholog: b2585; Escherichia coli O157:H7 ortholog: z3870.


ensembl_gene_id: c3111
symbol: yfiM
gene_biotype: protein_coding
description:
  Hypothetical protein yfiM; Escherichia coli K-12 ortholog: b2586; Escherichia coli O157:H7 ortholog: z3871.


ensembl_gene_id: c3112
symbol: kgtP
gene_biotype: protein_coding
description:
  Alpha-ketoglutarate permease; Escherichia coli K-12 ortholog: b2587; Escherichia coli O157:H7 ortholog: z3872.


ensembl_gene_id: c3114
symbol: clpB
gene_biotype: protein_coding
description:
  ClpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB family.


ensembl_gene_id: c3115
symbol: yfiH
gene_biotype: protein_coding
description:
  Hypothetical protein yfiH; Escherichia coli K-12 ortholog: b2593; Escherichia coli O157:H7 ortholog: z3887; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: c3116
symbol: sfhB
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: c3117
symbol: yfiO
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yfiO precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamA, the core component of the assembly machinery.


ensembl_gene_id: c3119
symbol: yfiA
gene_biotype: protein_coding
description:
  Protein yfiA; During stationary phase, prevents 70S dimer formation, probably in order to regulate translation efficiency during transition between the exponential and the stationary phases. In addition, during environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored, is quickly released from the ribosome (By similarity).


ensembl_gene_id: c3120
symbol: pheA
gene_biotype: protein_coding
description:
  P-protein; Escherichia coli K-12 ortholog: b2599; Escherichia coli O157:H7 ortholog: z3891; bifunctional; Chorismate mutase; Prephenate dehydratase.


ensembl_gene_id: c3121
symbol: tyrA
gene_biotype: protein_coding
description:
  T-protein; Escherichia coli K-12 ortholog: b2600; Escherichia coli O157:H7 ortholog: z3892; bifunctional; Chorismate mutase; Prephenate dehydrogenase.


ensembl_gene_id: c3122
symbol: aroF
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: c3123
symbol: yfiL
gene_biotype: protein_coding
description:
  Hypothetical protein yfiL; URF2; Escherichia coli K-12 ortholog: b2602; Escherichia coli O157:H7 ortholog: z3895.


ensembl_gene_id: c3124
symbol: yfiR
gene_biotype: protein_coding
description:
  Hypothetical protein yfiR precursor; Escherichia coli K-12 ortholog: b2603; Escherichia coli O157:H7 ortholog: z3897.


ensembl_gene_id: c3125
symbol: yfiN
gene_biotype: protein_coding
description:
  Hypothetical protein yfiN; Escherichia coli K-12 ortholog: b2604; Escherichia coli O157:H7 ortholog: z3898.


ensembl_gene_id: c3126
symbol: yfiB
gene_biotype: protein_coding
description:
  Putative lipoprotein yfiB precursor; Escherichia coli K-12 ortholog: b2605; Escherichia coli O157:H7 ortholog: z3899.


ensembl_gene_id: c3127
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: c3128
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (Guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: c3129
symbol: yfjA
gene_biotype: protein_coding
description:
  16S rRNA processing protein rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: c3130
symbol: rpsP
gene_biotype: protein_coding
description:
  30S ribosomal protein S16; In addition to being a ribosomal protein, S16 also has a cation-dependent endonuclease activity.


ensembl_gene_id: c3131
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: c3132
symbol: ypjD
gene_biotype: protein_coding
description:
  Hypothetical protein ypjD; Escherichia coli K-12 ortholog: b2611; Escherichia coli O157:H7 ortholog: z3905.


ensembl_gene_id: c3133
symbol: c3133
gene_biotype: protein_coding
description:
  Hypothetical protein; Fusion of Escherichia coli K-12 B2612 and B2613; Residues 1 to 420 of 420 are 99.28 pct identical to residues 9 to 428 of 428 from SwissProt.40 : >sp|P37908|YFJD_ECOLI HYPOTHETICAL 46.4 KDA PROTEIN IN FFH-GRPE INTERGENIC REGION.


ensembl_gene_id: c3135
symbol: grpE
gene_biotype: protein_coding
description:
  GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: c3136
symbol: c3136
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 30 to 83 of 83 are 100.00 pct identical to residues 10 to 63 of 63 from SwissProt.40 : >sp|P37907|YFJC_ECOLI HYPOTHETICAL 7.0 KD PROTEIN IN GRPE-RECN INTERGENIC REGION.


ensembl_gene_id: c3137
symbol: yfjB
gene_biotype: protein_coding
description:
  Probable inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: c3139
symbol: bamE
gene_biotype: protein_coding
description:
  Small protein A; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: c3140
symbol: pasI
gene_biotype: protein_coding
description:
  Protein yfjF; Antitoxin component of a type II toxin-antitoxin (TA) system. Unlike the case in E.coli K12 high level expression of this protein abrogates the toxic effects due to overexpression of the cognate toxin PasT; Belongs to the UPF0125 (RnfH) family.


ensembl_gene_id: c3141
symbol: yfjG
gene_biotype: protein_coding
description:
  Hypothetical protein yfjG; Toxic component of a type II toxin-antitoxin (TA) system. Binds to 50S ribosomal subunits, preventing them from associating with 30S subunits to form 70S ribosomes (By similarity). In this strain of E.coli low levels of PasT complement operon disruption, however high levels are toxic; their effects are abrogated by high level expression of cognate antitoxin PasI. Plays a role in persistence after antibiotic exposure and survival of nitrosative stress; the toxic and persistence phenotypes are conferred by the same N-terminal region of the protein, while the st [...]


ensembl_gene_id: c3142
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: c3144
symbol: c3144
gene_biotype: protein_coding
description:
  DNA-damage-inducible protein I; Escherichia coli K-12 ortholog: b1061; Escherichia coli O157:H7 ortholog: z3916.


ensembl_gene_id: c3146
symbol: pinR
gene_biotype: protein_coding
description:
  Putative DNA-invertase from lambdoid prophage Rac; Escherichia coli K-12 ortholog: b1374; Escherichia coli O157:H7 ortholog: z5885; Belongs to the site-specific recombinase resolvase family.


ensembl_gene_id: c3148
symbol: c3148
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 110 to 233 of 346 are 31.25 pct identical to residues 486 to 611 of 669 from GenPept.129 : >gb|AAD03286.1| (AF063097) gpH [Enterobacteria phage P2].


ensembl_gene_id: c3150
symbol: c3150
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 118 to 438 of 809 are 30.28 pct identical to residues 291 to 638 of 973 from GenPept.129 : >gb|AAG56007.1|AE005333_4 (AE005333) putative membrane protein of prophage CP-933X [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c3151
symbol: c3151
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 15 to 146 of 146 are 45.32 pct identical to residues 36 to 174 of 206 from SwissProt.40 : >sp|P03774|Y206_LAMBD HYPOTHETICAL PROTEIN ORF206.


ensembl_gene_id: c3172
symbol: c3172
gene_biotype: protein_coding
description:
  Putative head-tail joining protein of prophage; Required for the stabilization of DNA within the phage head and for attachment of tails onto the head during morphogenesis.


ensembl_gene_id: c3174
symbol: nohB
gene_biotype: protein_coding
description:
  Prophage QSR' DNA packaging protein NU1 homolog; Escherichia coli K-12 ortholog: b0560; Escherichia coli O157:H7 ortholog: z1882.


ensembl_gene_id: c3175
symbol: c3175
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 179 of 179 are 78.21 pct identical to residues 1 to 179 of 179 from GenPept.129 : >gb|AAB40756.1| (U82598) hypothetical protein [Escherichia coli].


ensembl_gene_id: c3177
symbol: cspI
gene_biotype: protein_coding
description:
  Cold shock-like protein cspI; CSP-I; Escherichia coli K-12 ortholog: b1552; Escherichia coli O157:H7 ortholog: z1406.


ensembl_gene_id: c3182
symbol: c3182
gene_biotype: protein_coding
description:
  Lysis protein S homolog from lambdoid prophage Qin; Escherichia coli K-12 ortholog: b1556; Escherichia coli O157:H7 ortholog: z3340.


ensembl_gene_id: c3184
symbol: cspB
gene_biotype: protein_coding
description:
  Cold shock-like protein cspB; CSP-B; Escherichia coli K-12 ortholog: b1557; Escherichia coli O157:H7 ortholog: z4981.


ensembl_gene_id: c3185
symbol: cspF
gene_biotype: protein_coding
description:
  Cold shock-like protein cspF; CSP-F; Escherichia coli K-12 ortholog: b1558; Escherichia coli O157:H7 ortholog: z1405.


ensembl_gene_id: c3186
symbol: c3186
gene_biotype: protein_coding
description:
  Antitermination protein Q homolog from lambdoid prophage Qin; Escherichia coli K-12 ortholog: b1559; Escherichia coli O157:H7 ortholog: z1345.


ensembl_gene_id: c3187
symbol: c3187
gene_biotype: protein_coding
description:
  Hypothetical protein ydfU; Escherichia coli K-12 ortholog: b1560; Escherichia coli O157:H7 ortholog: z2100.


ensembl_gene_id: c3188
symbol: c3188
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 265 of 265 are 88.84 pct identical to residues 1 to 269 of 269 from GenPept.129 : >gb|AAL89446.1| (U82619) unknown [Shigella flexneri bacteriophage V].


ensembl_gene_id: c3189
symbol: c3189
gene_biotype: protein_coding
description:
  Hypothetical protein; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family.


ensembl_gene_id: c3190
symbol: c3190
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 12 to 119 of 119 are 95.37 pct identical to residues 1 to 108 of 108 from GenPept.129 : >gb|AAL89444.1| (U82619) unknown [Shigella flexneri bacteriophage V].


ensembl_gene_id: c3192
symbol: yfdO
gene_biotype: protein_coding
description:
  Unknown protein encoded by cryptic prophage; Escherichia coli O157:H7 ortholog: z6070; Belongs to the phage O protein family.


ensembl_gene_id: c3196
symbol: c3196
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 65 of 66 are 53.84 pct identical to residues 1 to 65 of 75 from GenPept.129 : >dbj|BAB36188.1| (AP002559) putative cell division control protein [Escherichia coli O157:H7].


ensembl_gene_id: c3199
symbol: c3199
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 181 to 211 of 227 are 74.19 pct identical to residues 1 to 31 of 210 from GenPept.129 : >gb|AAG55872.1|AE005322_6 (AE005322) unknown protein encoded by prophage CP-933N [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c3200
symbol: c3200
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 103 to 228 of 228 are 97.61 pct identical to residues 23 to 148 of 148 from GenPept.129 : >gb|AAC75418.1| (AE000324) orf, hypothetical protein [Escherichia coli K12].


ensembl_gene_id: c3204
symbol: c3204
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 12 to 376 of 390 are 31.39 pct identical to residues 4 to 373 of 389 from GenPept.129 : >gb|AAG09988.1|AF251497_6 (AF251497) integrase [Cloning vector HKBS1]; Belongs to the 'phage' integrase family.


ensembl_gene_id: c3205
symbol: c3205
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 126 of 129 are 32.35 pct identical to residues 1 to 135 of 142 from GenPept.129 : >emb|CAD05563.1| (AL627272) putative bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c3207
symbol: ygaT
gene_biotype: protein_coding
description:
  Hypothetical protein ygaT; Acts as an alpha-ketoglutarate-dependent dioxygenase catalyzing hydroxylation of glutarate (GA) to L-2-hydroxyglutarate (L2HG). Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate.


ensembl_gene_id: c3208
symbol: ygaF
gene_biotype: protein_coding
description:
  Hypothetical protein ygaF; Catalyzes the dehydrogenation of L-2-hydroxyglutarate (L2HG) to alpha-ketoglutarate and couples to the respiratory chain by feeding electrons from the reaction into the membrane quinone pool. Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. Reaction=(S)-2-hydroxyglutarate + a quinone = 2-oxoglutarate + a quinol; Xref=Rhea:RHEA:58664, ChEBI:CHEBI:16782, ChEBI:CHEBI:16810, ChEBI:CHEBI:24646, ChEBI:CHEBI:132124; PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:58665; Belongs to the L2HGDH family.


ensembl_gene_id: c3209
symbol: gabD
gene_biotype: protein_coding
description:
  Succinate-semialdehyde dehydrogenase (NADP+); Escherichia coli K-12 ortholog: b2661; Escherichia coli O157:H7 ortholog: z3959; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: c3210
symbol: gabT
gene_biotype: protein_coding
description:
  4-aminobutyrate aminotransferase; Escherichia coli K-12 ortholog: b2662; Escherichia coli O157:H7 ortholog: z3960; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: c3211
symbol: gabP
gene_biotype: protein_coding
description:
  GABA permease; 4-amino butyrate transport carrier; Escherichia coli K-12 ortholog: b2663; Escherichia coli O157:H7 ortholog: z3961.


ensembl_gene_id: c3212
symbol: ygaE
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ygaE; Escherichia coli K-12 ortholog: b2664; Escherichia coli O157:H7 ortholog: z3963.


ensembl_gene_id: c3213
symbol: ygaU
gene_biotype: protein_coding
description:
  Unknown protein from 2D-page; Highly specific potassium binding protein that is required for normal growth in the presence of high levels of external K(+). May act as a sensor of cytoplasmic K(+) concentration.


ensembl_gene_id: c3215
symbol: yqaE
gene_biotype: protein_coding
description:
  Hypothetical protein yqaE; Escherichia coli K-12 ortholog: b2666; Escherichia coli O157:H7 ortholog: z3965.


ensembl_gene_id: c3216
symbol: ygaV
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ygaV; Escherichia coli K-12 ortholog: b2667; Escherichia coli O157:H7 ortholog: z3966.


ensembl_gene_id: c3217
symbol: ygaP
gene_biotype: protein_coding
description:
  Hypothetical protein ygaP; Escherichia coli K-12 ortholog: b2668; Escherichia coli O157:H7 ortholog: z3967.


ensembl_gene_id: c3218
symbol: stpA
gene_biotype: protein_coding
description:
  DNA-binding protein stpA; H-NS homolog stpA; Escherichia coli K-12 ortholog: b2669; Escherichia coli O157:H7 ortholog: z3968; Belongs to the histone-like protein H-NS family.


ensembl_gene_id: c3222
symbol: ygaC
gene_biotype: protein_coding
description:
  Hypothetical protein ygaC; Escherichia coli K-12 ortholog: b2671; Escherichia coli O157:H7 ortholog: z3971.


ensembl_gene_id: c3223
symbol: ygaM
gene_biotype: protein_coding
description:
  Hypothetical protein ygaM; Escherichia coli K-12 ortholog: b2672; Escherichia coli O157:H7 ortholog: z3972; Belongs to the ElaB/YgaM/YqjD family.


ensembl_gene_id: c3225
symbol: c3225
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: c3226
symbol: nrdH
gene_biotype: protein_coding
description:
  Glutaredoxin-like protein nrdH; Electron transport system for the ribonucleotide reductase system NrdEF.


ensembl_gene_id: c3228
symbol: nrdE
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase 2 alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: c3229
symbol: nrdF
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase 2 beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: c3230
symbol: proV
gene_biotype: protein_coding
description:
  Glycine betaine/L-proline transport ATP-binding protein proV; Escherichia coli K-12 ortholog: b2677; Escherichia coli O157:H7 ortholog: z3979.


ensembl_gene_id: c3231
symbol: proW
gene_biotype: protein_coding
description:
  Glycine betaine/L-proline transport system permease protein proW; Escherichia coli K-12 ortholog: b2678; Escherichia coli O157:H7 ortholog: z3980.


ensembl_gene_id: c3232
symbol: proX
gene_biotype: protein_coding
description:
  Glycine betaine-binding periplasmic protein precursor; Escherichia coli K-12 ortholog: b2679; Escherichia coli O157:H7 ortholog: z3981.


ensembl_gene_id: c3234
symbol: c3234
gene_biotype: protein_coding
description:
  Putative transport protein; Escherichia coli K-12 ortholog: b2681; Escherichia coli O157:H7 ortholog: z3982.


ensembl_gene_id: c3235
symbol: ygaZ
gene_biotype: protein_coding
description:
  Hypothetical protein ygaZ; Escherichia coli K-12 ortholog: b2682; Escherichia coli O157:H7 ortholog: z3983.


ensembl_gene_id: c3236
symbol: ygaH
gene_biotype: protein_coding
description:
  Hypothetical protein ygaH; Escherichia coli K-12 ortholog: b2683; Escherichia coli O157:H7 ortholog: z3984.


ensembl_gene_id: c3238
symbol: emrA
gene_biotype: protein_coding
description:
  Multidrug resistance protein A; Escherichia coli K-12 ortholog: b2685; Escherichia coli O157:H7 ortholog: z3986.


ensembl_gene_id: c3239
symbol: emrB
gene_biotype: protein_coding
description:
  Multidrug resistance protein B; Escherichia coli K-12 ortholog: b2686; Escherichia coli O157:H7 ortholog: z3987; Belongs to the major facilitator superfamily.


ensembl_gene_id: c3240
symbol: c3240
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 6 to 115 of 118 are 38.18 pct identical to residues 4 to 111 of 210 from GenPept.129 : >gb|AAF12618.1|AE001826_87 (AE001826) hypothetical protein [Deinococcus radiodurans].


ensembl_gene_id: c3243
symbol: c3243
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 16 to 359 of 370 are 37.50 pct identical to residues 19 to 360 of 363 from GenPept.129 : >gb|AAK78729.1|AE007591_2 (AE007591) PolyA polymerase related protein (HD hydrolase) and P-loop ATP-ase domain [Clostridium acetobutylicum].


ensembl_gene_id: c3244
symbol: ygaG
gene_biotype: protein_coding
description:
  Autoinducer-2 production protein luxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.


ensembl_gene_id: c3245
symbol: gshA
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase; Escherichia coli K-12 ortholog: b2688; Escherichia coli O157:H7 ortholog: z3989; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.


ensembl_gene_id: c3246
symbol: yqaA
gene_biotype: protein_coding
description:
  Hypothetical protein yqaA; Escherichia coli K-12 ortholog: b2689; Escherichia coli O157:H7 ortholog: z3990.


ensembl_gene_id: c3247
symbol: yqaB
gene_biotype: protein_coding
description:
  Hypothetical protein yqaB; Escherichia coli K-12 ortholog: b2690; Escherichia coli O157:H7 ortholog: z3991.


ensembl_gene_id: c3249
symbol: csrA
gene_biotype: protein_coding
description:
  Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).


ensembl_gene_id: c3251
symbol: c3251
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 50 of 56 are 92.00 pct identical to residues 74 to 123 of 133 from GenPept.129 : >gb|AAG57802.1|AE005498_3 (AE005498) Z4000 gene product [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c3252
symbol: oraA
gene_biotype: protein_coding
description:
  Regulatory protein recX; Modulates RecA activity through direct physical interaction. Can inhibit both RecA recombinase and coprotease activities. May have a regulatory role during the SOS response. Inhibits DNA strand exchange in vitro (By similarity); Belongs to the RecX family.


ensembl_gene_id: c3253
symbol: recA
gene_biotype: protein_coding
description:
  RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: c3255
symbol: mltB
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase B precursor; Escherichia coli K-12 ortholog: b2701; Escherichia coli O157:H7 ortholog: z4004.


ensembl_gene_id: c3256
symbol: srlA
gene_biotype: protein_coding
description:
  PTS system, glucitol/sorbitol-specific IIC2 component; EIIC2-GUT; Escherichia coli K-12 ortholog: b2702; Escherichia coli O157:H7 ortholog: z4005.


ensembl_gene_id: c3257
symbol: srlE
gene_biotype: protein_coding
description:
  PTS system, glucitol/sorbitol-specific IIBC component; EIIBC-GUT; Escherichia coli K-12 ortholog: b2703; Escherichia coli O157:H7 ortholog: z4009.


ensembl_gene_id: c3258
symbol: srlB
gene_biotype: protein_coding
description:
  PTS system, glucitol/sorbitol-specific IIA component; EIIA-gut; Escherichia coli K-12 ortholog: b2704; Escherichia coli O157:H7 ortholog: z4011.


ensembl_gene_id: c3259
symbol: srlD
gene_biotype: protein_coding
description:
  Sorbitol-6-phosphate 2-dehydrogenase; Escherichia coli K-12 ortholog: b2705; Escherichia coli O157:H7 ortholog: z4012; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: c3260
symbol: gutM
gene_biotype: protein_coding
description:
  Glucitol operon activator protein; Escherichia coli K-12 ortholog: b2706; Escherichia coli O157:H7 ortholog: z4013.


ensembl_gene_id: c3261
symbol: srlR
gene_biotype: protein_coding
description:
  Glucitol operon repressor; Escherichia coli K-12 ortholog: b2707; Escherichia coli O157:H7 ortholog: z4014.


ensembl_gene_id: c3262
symbol: gutQ
gene_biotype: protein_coding
description:
  GutQ protein; Catalyzes the reversible aldol-ketol isomerization between D- ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P). It is also able of sustaining the biosynthetic pathway of 3-deoxy-D-manno- octulosonate (KDO), a unique 8-carbon sugar component of lipopolysaccharides (LPSs) (By similarity).


ensembl_gene_id: c3263
symbol: ygaA
gene_biotype: protein_coding
description:
  Hypothetical sigma-54-dependent transcriptional regulator ygaA; Required for the expression of anaerobic nitric oxide (NO) reductase, acts as a transcriptional activator for at least the norVW operon. Activation also requires sigma-54.


ensembl_gene_id: c3264
symbol: c3264
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 288 to 347 of 347 are 94.99 pct identical to residues 1 to 60 of 60 from GenPept.129 : >gb|AAA92664.1| (U03846) putative ORF >60AA [Escherichia coli].


ensembl_gene_id: c3267
symbol: ygbD
gene_biotype: protein_coding
description:
  FlRd-NAD(+) reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase.


ensembl_gene_id: c3268
symbol: hypF
gene_biotype: protein_coding
description:
  Hydrogenase maturation protein hypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.


ensembl_gene_id: c3273
symbol: c3273
gene_biotype: protein_coding
description:
  Hypothetical protein ygjM; Escherichia coli K-12 ortholog: b3082; Escherichia coli O157:H7 ortholog: z4435.


ensembl_gene_id: c3274
symbol: higB
gene_biotype: protein_coding
description:
  Hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system. A probable translation-dependent mRNA interferase. Probably counteracted by antitoxin HigA.


ensembl_gene_id: c3276
symbol: c3276
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 12 to 257 of 257 are 72.17 pct identical to residues 22 to 269 of 269 from GenPept.129 : >gb|AAL21724.1| (AE008830) putative periplasmic or exported protein [Salmonella typhimurium LT2].


ensembl_gene_id: c3277
symbol: hycI
gene_biotype: protein_coding
description:
  Hydrogenase 3 maturation protease; Escherichia coli K-12 ortholog: b2717; Escherichia coli O157:H7 ortholog: z4025.


ensembl_gene_id: c3278
symbol: hycH
gene_biotype: protein_coding
description:
  Formate hydrogenlyase maturation protein hycH; Escherichia coli K-12 ortholog: b2718; Escherichia coli O157:H7 ortholog: z4026.


ensembl_gene_id: c3281
symbol: hycE
gene_biotype: protein_coding
description:
  Formate hydrogenlyase subunit 5 precursor; FHL subunit 5; Escherichia coli K-12 ortholog: b2721; Escherichia coli O157:H7 ortholog: z4029.


ensembl_gene_id: c3285
symbol: hycA
gene_biotype: protein_coding
description:
  Formate hydrogenlyase Regulatory protein hycA; Escherichia coli K-12 ortholog: b2725; Escherichia coli O157:H7 ortholog: z4033.


ensembl_gene_id: c3286
symbol: hypA
gene_biotype: protein_coding
description:
  HypA protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: c3287
symbol: hypB
gene_biotype: protein_coding
description:
  Hydrogenase isoenzymes nickel incorporation protein hypB; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. Exhibits a low intrinsic GTPase activity, which is essential for nickel insertion.


ensembl_gene_id: c3288
symbol: hypC
gene_biotype: protein_coding
description:
  Hydrogenase isoenzymes formation protein hypC; Involved in the maturation of [NiFe] hydrogenases. Involved in the biosynthesis of the Fe(CN)(2)CO cofactor. HypC delivers iron- bound CO(2) to HypD where reduction to CO probably occurs. In complex with HypD, accepts the cyanide ligand generated by HypF and HypE, and also coordinates the carbon monoxide ligand. Belongs to the HupF/HypC family.


ensembl_gene_id: c3289
symbol: hypD
gene_biotype: protein_coding
description:
  Hydrogenase isoenzymes formation protein hypD; Escherichia coli K-12 ortholog: b2729; Escherichia coli O157:H7 ortholog: z4038; Belongs to the HypD family.


ensembl_gene_id: c3290
symbol: hypE
gene_biotype: protein_coding
description:
  Hydrogenase isoenzymes formation protein hypE; Escherichia coli K-12 ortholog: b2730; Escherichia coli O157:H7 ortholog: z4039.


ensembl_gene_id: c3291
symbol: fhlA
gene_biotype: protein_coding
description:
  Formate hydrogenlyase transcriptional activator; Escherichia coli K-12 ortholog: b2731; Escherichia coli O157:H7 ortholog: z4040.


ensembl_gene_id: c3292
symbol: c3292
gene_biotype: protein_coding
description:
  Potential molybdenum-pterin-binding-protein; Residues 14 to 155 of 155 are 48.59 pct identical to residues 1 to 142 of 142 from GenPept.129 : >emb|CAA90038.1| (Z49882) potential molybdenum-pterin-binding-protein [Azotobacter vinelandii].


ensembl_gene_id: c3293
symbol: ygbA
gene_biotype: protein_coding
description:
  Hypothetical protein ygbA; Escherichia coli K-12 ortholog: b2732; Escherichia coli O157:H7 ortholog: z4041.


ensembl_gene_id: c3294
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein mutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: c3295
symbol: pphB
gene_biotype: protein_coding
description:
  Serine/threonine protein phosphatase 2; Escherichia coli K-12 ortholog: b2734; Escherichia coli O157:H7 ortholog: z4044.


ensembl_gene_id: c3297
symbol: ygbJ
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ygbJ; Catalyzes oxidation of L-threonate to 2-oxo-tetronate. Can use either NAD(+) or NADP(+) as cosubstrate, with a preference for NAD(+).


ensembl_gene_id: c3299
symbol: ygbL
gene_biotype: protein_coding
description:
  Hypothetical aldolase class II protein ygbL; Catalyzes the decarboxylation of 3-oxo-tetronate 4-phosphate to dihydroxyacetone phosphate (DHAP) and CO(2). Belongs to the aldolase class II family. AraD/FucA subfamily.


ensembl_gene_id: c3300
symbol: ygbM
gene_biotype: protein_coding
description:
  Hypothetical protein ygbM; Escherichia coli K-12 ortholog: b2739; Escherichia coli O157:H7 ortholog: z0662; Belongs to the hyi family.


ensembl_gene_id: c3302
symbol: c3302
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 347 of 347 are 100.00 pct identical to residues 1 to 347 of 347 from GenPept.129 : >gb|AAG27179.1|AF270497_4 (AF270497) unknown [Escherichia coli].


ensembl_gene_id: c3304
symbol: c3304
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 183 of 183 are 100.00 pct identical to residues 1 to 183 of 183 from GenPept.129 : >gb|AAG27178.1|AF270497_3 (AF270497) unknown [Escherichia coli].


ensembl_gene_id: c3306
symbol: c3306
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 172 of 172 are 100.00 pct identical to residues 159 to 330 of 330 from GenPept.129 : >gb|AAL01414.1|AF410777_1 (AF410777) RpoS [Escherichia coli].


ensembl_gene_id: c3307
symbol: c3307
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 13 to 144 of 144 are 99.24 pct identical to residues 1 to 132 of 330 from MG1655 : b2741; Belongs to the sigma-70 factor family.


ensembl_gene_id: c3308
symbol: nlpD
gene_biotype: protein_coding
description:
  Lipoprotein nlpD precursor; Escherichia coli K-12 ortholog: b2742; Escherichia coli O157:H7 ortholog: z4050.


ensembl_gene_id: c3310
symbol: pcm
gene_biotype: protein_coding
description:
  Protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: c3311
symbol: surE
gene_biotype: protein_coding
description:
  Acid phosphatase surE; Nucleotidase with a broad substrate specificity as it can dephosphorylate various ribo- and deoxyribonucleoside 5'-monophosphates and ribonucleoside 3'-monophosphates with highest affinity to 3'-AMP. Also hydrolyzes polyphosphate (exopolyphosphatase activity) with the preference for short-chain-length substrates (P20-25). Might be involved in the regulation of dNTP and NTP pools, and in the turnover of 3'-mononucleotides produced by numerous intracellular RNases (T1, T2, and F) during the degradation of various RNAs.


ensembl_gene_id: c3312
symbol: ygbO
gene_biotype: protein_coding
description:
  Protein ygbO; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.


ensembl_gene_id: c3313
symbol: ygbB
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: c3314
symbol: ygbP
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.


ensembl_gene_id: c3315
symbol: ygbQ
gene_biotype: protein_coding
description:
  Hypothetical protein ygbQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: c3316
symbol: ygbE
gene_biotype: protein_coding
description:
  Hypothetical protein ygbE; Escherichia coli K-12 ortholog: b2749; Escherichia coli O157:H7 ortholog: z4057.


ensembl_gene_id: c3318
symbol: cysN
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: c3319
symbol: cysD
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase subunit 2; Escherichia coli K-12 ortholog: b2752; Escherichia coli O157:H7 ortholog: z4060.


ensembl_gene_id: c3320
symbol: iap
gene_biotype: protein_coding
description:
  Alkaline phosphatase isozyme conversion protein precursor; Escherichia coli K-12 ortholog: b2753; Escherichia coli O157:H7 ortholog: z4061.


ensembl_gene_id: c3322
symbol: cysI
gene_biotype: protein_coding
description:
  Sulfite reductase [NADPH] hemoprotein beta-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: c3323
symbol: cysJ
gene_biotype: protein_coding
description:
  Sulfite reductase [NADPH] flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component; Belongs to the NADPH-dependent sulphite reductase flavoprotein subunit CysJ family. In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.


ensembl_gene_id: c3324
symbol: ygcM
gene_biotype: protein_coding
description:
  Putative 6-pyruvoyl tetrahydrobiopterin synthase; Escherichia coli K-12 ortholog: b2765; Escherichia coli O157:H7 ortholog: z4075.


ensembl_gene_id: c3325
symbol: ygcN
gene_biotype: protein_coding
description:
  Probable electron transfer flavoprotein-quinone oxidoreductase ygcN; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.


ensembl_gene_id: c3328
symbol: ygcQ
gene_biotype: protein_coding
description:
  Putative electron transfer flavoprotein subunit ygcQ; Escherichia coli K-12 ortholog: b2769; Escherichia coli O157:H7 ortholog: z4080.


ensembl_gene_id: c3329
symbol: ygcR
gene_biotype: protein_coding
description:
  Putative electron transfer flavoprotein subunit ygcR; Escherichia coli K-12 ortholog: b2770; Escherichia coli O157:H7 ortholog: z4081.


ensembl_gene_id: c3330
symbol: ygcS
gene_biotype: protein_coding
description:
  Hypothetical metabolite transport protein ygcS; Escherichia coli K-12 ortholog: b2771; Escherichia coli O157:H7 ortholog: z4083.


ensembl_gene_id: c3331
symbol: c3331
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 221 to 484 of 484 are 98.10 pct identical to residues 1 to 264 of 264 from MG1655 : b2772.


ensembl_gene_id: c3332
symbol: ygcW
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ygcW; Escherichia coli K-12 ortholog: b2774; Escherichia coli O157:H7 ortholog: z4085.


ensembl_gene_id: c3333
symbol: yqcE
gene_biotype: protein_coding
description:
  Hypothetical protein yqcE; Escherichia coli K-12 ortholog: b2775; Escherichia coli O157:H7 ortholog: z4086.


ensembl_gene_id: c3334
symbol: ygcE
gene_biotype: protein_coding
description:
  Hypothetical sugar kinase ygcE; Escherichia coli K-12 ortholog: b2776; Escherichia coli O157:H7 ortholog: z4087.


ensembl_gene_id: c3335
symbol: ygcF
gene_biotype: protein_coding
description:
  Hypothetical protein ygcF; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: c3342
symbol: ygcG
gene_biotype: protein_coding
description:
  Hypothetical protein ygcG; Escherichia coli K-12 ortholog: b2778; Escherichia coli O157:H7 ortholog: z4093.


ensembl_gene_id: c3344
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.


ensembl_gene_id: c3345
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: c3347
symbol: relA
gene_biotype: protein_coding
description:
  GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp (By similarity).


ensembl_gene_id: c3348
symbol: ygcA
gene_biotype: protein_coding
description:
  23S rRNA (Uracil-5-)-methyltransferase rumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.


ensembl_gene_id: c3349
symbol: barA
gene_biotype: protein_coding
description:
  Sensor protein barA; Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay (By similarity).


ensembl_gene_id: c3350
symbol: ygcX
gene_biotype: protein_coding
description:
  Glucarate dehydratase; Escherichia coli K-12 ortholog: b2787; Escherichia coli O157:H7 ortholog: z4102; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: c3352
symbol: ygcY
gene_biotype: protein_coding
description:
  Glucarate dehydratase related protein; Escherichia coli K-12 ortholog: b2788; Escherichia coli O157:H7 ortholog: z4103.


ensembl_gene_id: c3353
symbol: c3353
gene_biotype: protein_coding
description:
  Probable glucarate transporter; D-glucarate permease; Escherichia coli K-12 ortholog: b2789; Escherichia coli O157:H7 ortholog: z4105.


ensembl_gene_id: c3356
symbol: yqcA
gene_biotype: protein_coding
description:
  Hypothetical protein yqcA; Escherichia coli K-12 ortholog: b2790; Escherichia coli O157:H7 ortholog: z4106.


ensembl_gene_id: c3357
symbol: yqcB
gene_biotype: protein_coding
description:
  Hypothetical protein yqcB; Responsible for synthesis of pseudouridine from uracil-65 in transfer RNAs; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: c3358
symbol: yqcC
gene_biotype: protein_coding
description:
  Hypothetical protein yqcC; Escherichia coli K-12 ortholog: b2792; Escherichia coli O157:H7 ortholog: z4108.


ensembl_gene_id: c3359
symbol: syd
gene_biotype: protein_coding
description:
  Syd protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function (By similarity); Belongs to the Syd family.


ensembl_gene_id: c3360
symbol: yqcD
gene_biotype: protein_coding
description:
  Hypothetical protein yqcD; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).


ensembl_gene_id: c3361
symbol: ygdH
gene_biotype: protein_coding
description:
  Hypothetical protein ygdH; Catalyzes the hydrolysis of the N-glycosidic bond of diverse pyrimidine and purine nucleotide 5'-monophosphates, to form ribose 5- phosphate and the corresponding free base. Can use AMP, GMP, IMP, CMP, dTMP and UMP as substrates. Cannot catalyze the reverse reactions. May contribute to nucleoside pool homeostasis by degrading excess nucleotides and feeding back the ribose moiety to catabolism. Belongs to the LOG family.


ensembl_gene_id: c3364
symbol: sdaC
gene_biotype: protein_coding
description:
  Serine transporter; Escherichia coli K-12 ortholog: b2796; Escherichia coli O157:H7 ortholog: z4113.


ensembl_gene_id: c3365
symbol: sdaB
gene_biotype: protein_coding
description:
  L-serine dehydratase 2; Escherichia coli K-12 ortholog: b2797; Escherichia coli O157:H7 ortholog: z4114; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: c3366
symbol: exo
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease IX; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment.


ensembl_gene_id: c3367
symbol: fucO
gene_biotype: protein_coding
description:
  Lactaldehyde reductase; Escherichia coli K-12 ortholog: b2799; Escherichia coli O157:H7 ortholog: z4116.


ensembl_gene_id: c3368
symbol: fucA
gene_biotype: protein_coding
description:
  L-fuculose phosphate aldolase; Involved in the degradation of L-fucose and D-arabinose. Catalyzes the reversible cleavage of L-fuculose 1-phosphate (Fuc1P) to yield dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.


ensembl_gene_id: c3375
symbol: fucR
gene_biotype: protein_coding
description:
  L-fucose operon activator; Escherichia coli K-12 ortholog: b2805; Escherichia coli O157:H7 ortholog: z4122.


ensembl_gene_id: c3376
symbol: ygdE
gene_biotype: protein_coding
description:
  Hypothetical protein ygdE; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.


ensembl_gene_id: c3377
symbol: ygdD
gene_biotype: protein_coding
description:
  Hypothetical protein ygdD; Escherichia coli K-12 ortholog: b2807; Escherichia coli O157:H7 ortholog: z4124.


ensembl_gene_id: c3378
symbol: gcvA
gene_biotype: protein_coding
description:
  Glycine cleavage system transcriptional activator; Regulatory protein for the glycine cleavage system operon (gcv). Mediates activation of gcv by glycine and repression by purines. GcvA is negatively autoregulated. Binds to three sites upstream of the gcv promoter (By similarity); Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c3380
symbol: ygdI
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein ygdI precursor; Escherichia coli K-12 ortholog: b2809; Escherichia coli O157:H7 ortholog: z4126.


ensembl_gene_id: c3381
symbol: c3381
gene_biotype: protein_coding
description:
  Cysteine sulfinate desulfinase; Escherichia coli K-12 ortholog: b2810; Escherichia coli O157:H7 ortholog: z4127.


ensembl_gene_id: c3382
symbol: ygdK
gene_biotype: protein_coding
description:
  Hypothetical protein ygdK; Escherichia coli K-12 ortholog: b2811; Escherichia coli O157:H7 ortholog: z4128.


ensembl_gene_id: c3383
symbol: ygdL
gene_biotype: protein_coding
description:
  Hypothetical protein ygdL; Escherichia coli K-12 ortholog: b2812; Escherichia coli O157:H7 ortholog: z4129.


ensembl_gene_id: c3384
symbol: mltA
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase A precursor; Escherichia coli K-12 ortholog: b2813; Escherichia coli O157:H7 ortholog: z4130.


ensembl_gene_id: c3385
symbol: c3385
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 9 to 171 of 173 are 73.61 pct identical to residues 3 to 165 of 166 from GenPept.129 : >emb|CAC90290.1| (AJ414148) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3387
symbol: c3387
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 444 of 445 are 59.33 pct identical to residues 1 to 449 of 450 from GenPept.129 : >emb|CAC89820.1| (AJ414145) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3388
symbol: c3388
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 8 to 218 of 221 are 51.38 pct identical to residues 13 to 226 of 228 from GenPept.129 : >emb|CAC90293.1| (AJ414148) putative membrane protein [Yersinia pestis].


ensembl_gene_id: c3389
symbol: c3389
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 6 to 550 of 550 are 41.51 pct identical to residues 6 to 562 of 578 from GenPept.129 : >emb|CAC90294.1| (AJ414148) putative exported protein [Yersinia pestis].


ensembl_gene_id: c3391
symbol: c3391
gene_biotype: protein_coding
description:
  Secreted protein Hcp; Residues 1 to 163 of 163 are 83.43 pct identical to residues 1 to 163 of 163 from GenPept.129 : >emb|CAC90295.1| (AJ414148) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3392
symbol: c3392
gene_biotype: protein_coding
description:
  Heat shock protein F84.1; Escherichia coli K-12 ortholog: b2592; Escherichia coli O157:H7 ortholog: z0254; Belongs to the ClpA/ClpB family.


ensembl_gene_id: c3393
symbol: c3393
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 10 to 743 of 824 are 62.75 pct identical to residues 10 to 749 of 782 from GenPept.129 : >emb|CAC89815.1| (AJ414145) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3395
symbol: c3395
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 30 to 634 of 658 are 31.40 pct identical to residues 41 to 639 of 746 from GenPept.129 : >emb|CAD14662.1| (AL646061) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum].


ensembl_gene_id: c3396
symbol: c3396
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 7 to 83 of 90 are 37.66 pct identical to residues 15 to 91 of 101 from GenPept.129 : >emb|CAC89712.1| (AJ414145) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3398
symbol: c3398
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 78 to 1111 of 1112 are 50.43 pct identical to residues 97 to 1136 of 1140 from GenPept.129 : >emb|CAC90304.1| (AJ414148) putative membrane protein [Yersinia pestis].


ensembl_gene_id: c3399
symbol: c3399
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 10 to 539 of 545 are 60.82 pct identical to residues 1 to 532 of 533 from GenPept.129 : >emb|CAC90305.1| (AJ414148) hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3400
symbol: c3400
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 539 of 934 are 73.33 pct identical to residues 1 to 539 of 587 from GenPept.129 : >emb|CAC90308.1| (AJ414148) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3401
symbol: c3401
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 19 to 172 of 178 are 47.77 pct identical to residues 1 to 157 of 162 from GenPept.129 : >emb|CAC90310.1| (AJ414148) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3402
symbol: c3402
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 138 of 142 are 59.12 pct identical to residues 5 to 141 of 150 from GenPept.129 : >emb|CAC90311.1| (AJ414148) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3403
symbol: c3403
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 14 to 450 of 458 are 40.91 pct identical to residues 12 to 449 of 455 from GenPept.129 : >emb|CAC90312.1| (AJ414148) hypothetical protein [Yersinia pestis].


ensembl_gene_id: c3405
symbol: c3405
gene_biotype: protein_coding
description:
  2-hydroxyacid dehydrogenase; Residues 5 to 318 of 318 are 37.77 pct identical to residues 3 to 317 of 317 from GenPept.129 : >gb|AAK90773.1| (AE007909) AGR_pAT_578p [Agrobacterium tumefaciens str. C58 (Cereon)]; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: c3406
symbol: c3406
gene_biotype: protein_coding
description:
  Phosphosugar isomerase; Residues 1 to 195 of 198 are 44.10 pct identical to residues 1 to 195 of 322 from SwissProt.40 : >sp|O67500|YF46_AQUAE Hypothetical protein AQ_1546.


ensembl_gene_id: c3407
symbol: c3407
gene_biotype: protein_coding
description:
  Beta-cystathionase; Residues 1 to 336 of 391 are 99.70 pct identical to residues 1 to 336 of 336 from GenPept.129 : >gb|AAC61731.1| (AF081286) beta-cystathionase [Escherichia coli].


ensembl_gene_id: c3409
symbol: c3409
gene_biotype: protein_coding
description:
  Antiterminator; Residues 1 to 293 of 293 are 98.63 pct identical to residues 1 to 293 of 293 from GenPept.129 : >gb|AAC61733.1| (AF081286) sacpa operon antiterminator R1 [Escherichia coli].


ensembl_gene_id: c3411
symbol: amiC
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase amiC precursor; Cell-wall hydrolase involved in septum cleavage during cell division; Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family.


ensembl_gene_id: c3412
symbol: argA
gene_biotype: protein_coding
description:
  Amino-acid acetyltransferase; Escherichia coli K-12 ortholog: b2818; Escherichia coli O157:H7 ortholog: z4135; Belongs to the acetyltransferase family. ArgA subfamily.


ensembl_gene_id: c3413
symbol: recD
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V alpha chain; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repa [...]


ensembl_gene_id: c3414
symbol: recB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V beta chain; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repai [...]


ensembl_gene_id: c3415
symbol: ptr
gene_biotype: protein_coding
description:
  Protease III precursor; Endopeptidase that degrades small peptides of less than 7 kDa, such as glucagon and insulin.


ensembl_gene_id: c3416
symbol: recC
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V gamma chain; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repa [...]


ensembl_gene_id: c3417
symbol: ppdC
gene_biotype: protein_coding
description:
  Prepilin peptidase dependent protein C precursor; Escherichia coli K-12 ortholog: b2823; Escherichia coli O157:H7 ortholog: z4140.


ensembl_gene_id: c3418
symbol: ygdB
gene_biotype: protein_coding
description:
  Hypothetical protein ygdB precursor; Escherichia coli K-12 ortholog: b2824; Escherichia coli O157:H7 ortholog: z4141.


ensembl_gene_id: c3419
symbol: ppdB
gene_biotype: protein_coding
description:
  Prepilin peptidase dependent protein B precursor; Escherichia coli K-12 ortholog: b2825; Escherichia coli O157:H7 ortholog: z4142.


ensembl_gene_id: c3420
symbol: ppdA
gene_biotype: protein_coding
description:
  Prepilin peptidase dependent protein A precursor; Escherichia coli K-12 ortholog: b2826; Escherichia coli O157:H7 ortholog: z4143.


ensembl_gene_id: c3422
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. Belongs to the thymidylate synthase family. Bacterial-type ThyA subfamily.


ensembl_gene_id: c3423
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: c3424
symbol: ptsP
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase ptsP; Escherichia coli K-12 ortholog: b2829; Escherichia coli O157:H7 ortholog: z4146; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: c3425
symbol: ygdP
gene_biotype: protein_coding
description:
  (Di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: c3426
symbol: mutH
gene_biotype: protein_coding
description:
  DNA mismatch repair protein mutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair; Belongs to the MutH family.


ensembl_gene_id: c3428
symbol: ygdR
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein ygdR precursor; Escherichia coli K-12 ortholog: b2833; Escherichia coli O157:H7 ortholog: z4151.


ensembl_gene_id: c3430
symbol: ygeD
gene_biotype: protein_coding
description:
  Hypothetical protein ygeD; Catalyzes the facilitated diffusion of 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) into the cell; Belongs to the major facilitator superfamily. LplT (TC 2.A.1.42) family.


ensembl_gene_id: c3431
symbol: aas
gene_biotype: protein_coding
description:
  AAS bifunctional protein; Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1.


ensembl_gene_id: c3432
symbol: c3432
gene_biotype: protein_coding
description:
  Transposase; Residues 1 to 112 of 112 are 96.42 pct identical to residues 41 to 152 of 152 from SwissProt.40 : >sp|Q57334|T200_SALTY Transposase for insertion sequence element IS200.


ensembl_gene_id: c3434
symbol: galR
gene_biotype: protein_coding
description:
  Galactose operon repressor; Escherichia coli K-12 ortholog: b2837; Escherichia coli O157:H7 ortholog: z4155.


ensembl_gene_id: c3435
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: c3436
symbol: lysR
gene_biotype: protein_coding
description:
  Transcriptional activator protein lysR; Escherichia coli K-12 ortholog: b2839; Escherichia coli O157:H7 ortholog: z4157; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c3437
symbol: ygeA
gene_biotype: protein_coding
description:
  Hypothetical protein ygeA; Escherichia coli K-12 ortholog: b2840; Escherichia coli O157:H7 ortholog: z4160; Belongs to the aspartate/glutamate racemases family.


ensembl_gene_id: c3438
symbol: araE
gene_biotype: protein_coding
description:
  Arabinose-proton symporter; Arabinose transporter; Escherichia coli K-12 ortholog: b2841; Escherichia coli O157:H7 ortholog: z4161; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: c3439
symbol: kduD
gene_biotype: protein_coding
description:
  2-deoxy-D-gluconate 3-dehydrogenase; Escherichia coli K-12 ortholog: b2842; Escherichia coli O157:H7 ortholog: z4162.


ensembl_gene_id: c3440
symbol: kduI
gene_biotype: protein_coding
description:
  4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate.


ensembl_gene_id: c3441
symbol: yqeF
gene_biotype: protein_coding
description:
  Probable acetyl-CoA acetyltransferase; Escherichia coli K-12 ortholog: b2844; Escherichia coli O157:H7 ortholog: z4164; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: c3442
symbol: yqeG
gene_biotype: protein_coding
description:
  Hypothetical transport protein yqeG; Escherichia coli K-12 ortholog: b2845; Escherichia coli O157:H7 ortholog: z4165.


ensembl_gene_id: c3443
symbol: ygeR
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein ygeR precursor; Escherichia coli K-12 ortholog: b2865; Escherichia coli O157:H7 ortholog: z4203.


ensembl_gene_id: c3444
symbol: c3444
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, molybdenum binding subunit; Escherichia coli K-12 ortholog: b2866; Escherichia coli O157:H7 ortholog: z4205.


ensembl_gene_id: c3445
symbol: ygeT
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, FAD binding subunit; Escherichia coli K-12 ortholog: b2867; Escherichia coli O157:H7 ortholog: z4206.


ensembl_gene_id: c3446
symbol: c3446
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase iron-sulfur binding subunit; Escherichia coli K-12 ortholog: b2868; Escherichia coli O157:H7 ortholog: z4207.


ensembl_gene_id: c3447
symbol: ygeV
gene_biotype: protein_coding
description:
  Hypothetical sigma-54-dependent transcriptional regulator ygeV; Escherichia coli K-12 ortholog: b2869; Escherichia coli O157:H7 ortholog: z4208.


ensembl_gene_id: c3448
symbol: ygeW
gene_biotype: protein_coding
description:
  Hypothetical protein ygeW; Escherichia coli K-12 ortholog: b2870; Escherichia coli O157:H7 ortholog: z4209.


ensembl_gene_id: c3449
symbol: ygeX
gene_biotype: protein_coding
description:
  Putative diaminopropionate ammonia-lyase; Catalyzes the alpha,beta-elimination reaction of both L- and D-alpha,beta-diaminopropionate (DAP) to form pyruvate and ammonia. The D-isomer of serine is degraded to pyruvate, though very poorly; other amino acids (L-serine, D- and L-threonine, D- and L-beta-Cl-alanine) are not substrates.


ensembl_gene_id: c3450
symbol: ygeY
gene_biotype: protein_coding
description:
  Hypothetical protein ygeY; Escherichia coli K-12 ortholog: b2872; Escherichia coli O157:H7 ortholog: z4211.


ensembl_gene_id: c3451
symbol: ygeZ
gene_biotype: protein_coding
description:
  Hypothetical hydrolase ygeZ; Catalyzes the stereospecific hydrolysis of the cyclic amide bond of D-hydantoin derivatives with an aromatic side chains at the 5'- position. Has no activity on dihydropyrimidines. The physiological function is unknown.


ensembl_gene_id: c3452
symbol: yqeA
gene_biotype: protein_coding
description:
  Carbamate kinase-like protein yqeA; Escherichia coli K-12 ortholog: b2874; Escherichia coli O157:H7 ortholog: z4213; Belongs to the carbamate kinase family.


ensembl_gene_id: c3453
symbol: yqeB
gene_biotype: protein_coding
description:
  Hypothetical protein yqeB; Escherichia coli K-12 ortholog: b2875; Escherichia coli O157:H7 ortholog: z4214.


ensembl_gene_id: c3454
symbol: yqeC
gene_biotype: protein_coding
description:
  Hypothetical protein yqeC; Escherichia coli K-12 ortholog: b2876; Escherichia coli O157:H7 ortholog: z4215.


ensembl_gene_id: c3455
symbol: ygfJ
gene_biotype: protein_coding
description:
  Hypothetical protein ygfJ; Escherichia coli K-12 ortholog: b2877; Escherichia coli O157:H7 ortholog: z4216.


ensembl_gene_id: c3456
symbol: ygfK
gene_biotype: protein_coding
description:
  Hypothetical protein ygfK; Escherichia coli K-12 ortholog: b2878; Escherichia coli O157:H7 ortholog: z4217.


ensembl_gene_id: c3458
symbol: ygfM
gene_biotype: protein_coding
description:
  Hypothetical protein ygfM; Escherichia coli K-12 ortholog: b2880; Escherichia coli O157:H7 ortholog: z4219.


ensembl_gene_id: c3459
symbol: c3459
gene_biotype: protein_coding
description:
  Possible hypoxanthine oxidase xdhD; Escherichia coli K-12 ortholog: b2881; Escherichia coli O157:H7 ortholog: z4220.


ensembl_gene_id: c3460
symbol: ygfO
gene_biotype: protein_coding
description:
  Putative purine permease ygfO; Specific, proton motive force-dependent high-affinity transporter for xanthine; Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily.


ensembl_gene_id: c3461
symbol: ygfP
gene_biotype: protein_coding
description:
  Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.


ensembl_gene_id: c3462
symbol: c3462
gene_biotype: protein_coding
description:
  Hypothetical protein yjcD; Escherichia coli K-12 ortholog: b4064; Escherichia coli O157:H7 ortholog: z4223.


ensembl_gene_id: c3463
symbol: ygfS
gene_biotype: protein_coding
description:
  Putative electron transport protein ygfS; Escherichia coli K-12 ortholog: b2886; Escherichia coli O157:H7 ortholog: z4224.


ensembl_gene_id: c3464
symbol: ygfT
gene_biotype: protein_coding
description:
  Hypothetical protein ygfT; Escherichia coli K-12 ortholog: b2887; Escherichia coli O157:H7 ortholog: z4225.


ensembl_gene_id: c3465
symbol: ygfU
gene_biotype: protein_coding
description:
  Putative purine permease ygfU; Escherichia coli K-12 ortholog: b2888; Escherichia coli O157:H7 ortholog: z4226.


ensembl_gene_id: c3467
symbol: idi
gene_biotype: protein_coding
description:
  Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).


ensembl_gene_id: c3469
symbol: lysS
gene_biotype: protein_coding
description:
  Lysyl-tRNA synthetase; Escherichia coli K-12 ortholog: b2890; Escherichia coli O157:H7 ortholog: z4228; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: c3472
symbol: recJ
gene_biotype: protein_coding
description:
  Single-stranded-DNA-specific exonuclease recJ; Escherichia coli K-12 ortholog: b2892; Escherichia coli O157:H7 ortholog: z4230.


ensembl_gene_id: c3473
symbol: dsbC
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein dsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: c3474
symbol: xerD
gene_biotype: protein_coding
description:
  Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges  [...]


ensembl_gene_id: c3475
symbol: fldB
gene_biotype: protein_coding
description:
  Flavodoxin 2; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.


ensembl_gene_id: c3476
symbol: ygfX
gene_biotype: protein_coding
description:
  Hypothetical protein ygfX; Escherichia coli K-12 ortholog: b2896; Escherichia coli O157:H7 ortholog: z4234.


ensembl_gene_id: c3477
symbol: ygfY
gene_biotype: protein_coding
description:
  Hypothetical protein ygfY; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well.


ensembl_gene_id: c3479
symbol: ygfZ
gene_biotype: protein_coding
description:
  Unknown protein from 2D-page; Folate-binding protein involved in regulating the level of ATP-DnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication; Belongs to the tRNA-modifying YgfZ family.


ensembl_gene_id: c3480
symbol: yqfA
gene_biotype: protein_coding
description:
  Hypothetical protein yqfA; Escherichia coli K-12 ortholog: b2899; Escherichia coli O157:H7 ortholog: z4237.


ensembl_gene_id: c3481
symbol: yqfB
gene_biotype: protein_coding
description:
  Hypothetical protein yqfB; Escherichia coli K-12 ortholog: b2900; Escherichia coli O157:H7 ortholog: z4238; Belongs to the UPF0267 family.


ensembl_gene_id: c3483
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: c3484
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: c3489
symbol: ubiH
gene_biotype: protein_coding
description:
  2-octaprenyl-6-methoxyphenol hydroxylase; Escherichia coli K-12 ortholog: b2907; Escherichia coli O157:H7 ortholog: z4244.


ensembl_gene_id: c3490
symbol: pepP
gene_biotype: protein_coding
description:
  Xaa-Pro aminopeptidase; Escherichia coli K-12 ortholog: b2908; Escherichia coli O157:H7 ortholog: z4245.


ensembl_gene_id: c3491
symbol: ygfB
gene_biotype: protein_coding
description:
  Hypothetical protein ygfB; Escherichia coli K-12 ortholog: b2909; Escherichia coli O157:H7 ortholog: z4246; Belongs to the UPF0149 family.


ensembl_gene_id: c3492
symbol: ygfE
gene_biotype: protein_coding
description:
  Hypothetical protein ygfE; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: c3493
symbol: ygfA
gene_biotype: protein_coding
description:
  Hypothetical protein ygfA; Escherichia coli K-12 ortholog: b2912; Escherichia coli O157:H7 ortholog: z4249; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: c3494
symbol: serA
gene_biotype: protein_coding
description:
  D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: c3495
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: c3496
symbol: yqfE
gene_biotype: protein_coding
description:
  Hypothetical protein yqfE; Escherichia coli K-12 ortholog: b2915; To K.pneumoniae LtrA, E.coli YjiE, and YhcS.


ensembl_gene_id: c3497
symbol: iciA
gene_biotype: protein_coding
description:
  Chromosome initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c3498
symbol: c3498
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 309 of 351 are 86.88 pct identical to residues 1 to 343 of 714 from MG1655 : b2917.


ensembl_gene_id: c3499
symbol: ygfI
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ygfI; Escherichia coli K-12 ortholog: b2921; Escherichia coli O157:H7 ortholog: z4258; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c3500
symbol: yggE
gene_biotype: protein_coding
description:
  Hypothetical protein yggE; Escherichia coli K-12 ortholog: b2922; Escherichia coli O157:H7 ortholog: z4259.


ensembl_gene_id: c3501
symbol: yggA
gene_biotype: protein_coding
description:
  Hypothetical protein yggA; Involved in the export of arginine. Important to control the intracellular level of arginine and the correct balance between arginine and lysine (By similarity).


ensembl_gene_id: c3502
symbol: yggB
gene_biotype: protein_coding
description:
  Hypothetical protein yggB; Escherichia coli K-12 ortholog: b2924; Escherichia coli O157:H7 ortholog: z4261.


ensembl_gene_id: c3503
symbol: fba
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.


ensembl_gene_id: c3504
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Escherichia coli K-12 ortholog: b2926; Escherichia coli O157:H7 ortholog: z4265; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: c3505
symbol: epd
gene_biotype: protein_coding
description:
  D-erythrose 4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate.


ensembl_gene_id: c3511
symbol: yggC
gene_biotype: protein_coding
description:
  Hypothetical protein yggC; Escherichia coli K-12 ortholog: b2928; Escherichia coli O157:H7 ortholog: z4273.


ensembl_gene_id: c3512
symbol: yggD
gene_biotype: protein_coding
description:
  Hypothetical protein yggD; Escherichia coli K-12 ortholog: b2929; Escherichia coli O157:H7 ortholog: z4274.


ensembl_gene_id: c3513
symbol: c3513
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 58 of 62 are 100.00 pct identical to residues 1 to 58 of 321 from MG1655 : b2930.


ensembl_gene_id: c3514
symbol: c3514
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Escherichia coli K-12 ortholog: b2931; Escherichia coli O157:H7 ortholog: z4276.


ensembl_gene_id: c3515
symbol: cmtA
gene_biotype: protein_coding
description:
  PTS system, mannitol (Cryptic)-specific IIBC component; EIIBC-(C)MTL; Escherichia coli K-12 ortholog: b2933; Escherichia coli O157:H7 ortholog: z4277.


ensembl_gene_id: c3517
symbol: c3517
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 38 to 224 of 244 are 48.93 pct identical to residues 18 to 205 of 308 from GenPept.129 : >emb|CAC90171.1| (AJ414147) putative SPFH domain protein [Yersinia pestis].


ensembl_gene_id: c3518
symbol: c3518
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 15 to 60 of 152 are 65.21 pct identical to residues 1 to 46 of 256 from GenPept.129 : >gb|AAB40782.1| (U82598) enterobactin synthetase component D [Escherichia coli].


ensembl_gene_id: c3520
symbol: tktA
gene_biotype: protein_coding
description:
  Transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: c3521
symbol: yggG
gene_biotype: protein_coding
description:
  Putative metalloprotease yggG; Escherichia coli K-12 ortholog: b2936; Escherichia coli O157:H7 ortholog: z4280.


ensembl_gene_id: c3522
symbol: speB
gene_biotype: protein_coding
description:
  Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.


ensembl_gene_id: c3525
symbol: yqgB
gene_biotype: protein_coding
description:
  Hypothetical protein yqgB; Escherichia coli K-12 ortholog: b2939; Escherichia coli O157:H7 ortholog: z4284.


ensembl_gene_id: c3527
symbol: yqgD
gene_biotype: protein_coding
description:
  Hypothetical protein yqgD; Escherichia coli K-12 ortholog: b2941; Escherichia coli O157:H7 ortholog: z4286.


ensembl_gene_id: c3528
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: c3529
symbol: galP
gene_biotype: protein_coding
description:
  Galactose-proton symporter; Uptake of galactose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: c3530
symbol: sprT
gene_biotype: protein_coding
description:
  Protein sprT; Escherichia coli K-12 ortholog: b2944; Escherichia coli O157:H7 ortholog: z4289; Belongs to the SprT family.


ensembl_gene_id: c3531
symbol: endA
gene_biotype: protein_coding
description:
  Endonuclease I precursor; Escherichia coli K-12 ortholog: b2945; Escherichia coli O157:H7 ortholog: z4290.


ensembl_gene_id: c3532
symbol: yggJ
gene_biotype: protein_coding
description:
  Hypothetical protein yggJ; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (By similarity); Belongs to the RNA methyltransferase RsmE family.


ensembl_gene_id: c3533
symbol: gshB
gene_biotype: protein_coding
description:
  Glutathione synthetase; Escherichia coli K-12 ortholog: b2947; Escherichia coli O157:H7 ortholog: z4292.


ensembl_gene_id: c3534
symbol: yqgE
gene_biotype: protein_coding
description:
  Protein yqgE; Escherichia coli K-12 ortholog: b2948; Escherichia coli O157:H7 ortholog: z4293; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: c3535
symbol: yqgF
gene_biotype: protein_coding
description:
  Hypothetical protein yqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: c3536
symbol: yggR
gene_biotype: protein_coding
description:
  Hypothetical protein yggR; Escherichia coli K-12 ortholog: b2950; Escherichia coli O157:H7 ortholog: z4295.


ensembl_gene_id: c3537
symbol: yggS
gene_biotype: protein_coding
description:
  Hypothetical protein yggS; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: c3538
symbol: yggT
gene_biotype: protein_coding
description:
  Hypothetical protein yggT; Escherichia coli K-12 ortholog: b2952; Escherichia coli O157:H7 ortholog: z4297.


ensembl_gene_id: c3539
symbol: yggU
gene_biotype: protein_coding
description:
  Hypothetical protein yggU; Escherichia coli K-12 ortholog: b2953; Escherichia coli O157:H7 ortholog: z4298; Belongs to the UPF0235 family.


ensembl_gene_id: c3540
symbol: yggV
gene_biotype: protein_coding
description:
  HAM1 protein homolog; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: c3541
symbol: yggW
gene_biotype: protein_coding
description:
  Hypothetical protein yggW; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: c3542
symbol: yggM
gene_biotype: protein_coding
description:
  Hypothetical protein yggM; Escherichia coli K-12 ortholog: b2956; Escherichia coli O157:H7 ortholog: z4301.


ensembl_gene_id: c3543
symbol: ansB
gene_biotype: protein_coding
description:
  L-asparaginase II precursor; Escherichia coli K-12 ortholog: b2957; Escherichia coli O157:H7 ortholog: z4302; Belongs to the asparaginase 1 family.


ensembl_gene_id: c3544
symbol: yggN
gene_biotype: protein_coding
description:
  Hypothetical protein yggN; Escherichia coli K-12 ortholog: b2958; Escherichia coli O157:H7 ortholog: z4303.


ensembl_gene_id: c3546
symbol: yggL
gene_biotype: protein_coding
description:
  Hypothetical protein yggL; Escherichia coli K-12 ortholog: b2959; Escherichia coli O157:H7 ortholog: z4304.


ensembl_gene_id: c3547
symbol: yggH
gene_biotype: protein_coding
description:
  Hypothetical methyltransferase yggH; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.


ensembl_gene_id: c3550
symbol: yggX
gene_biotype: protein_coding
description:
  Protein yggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes; Belongs to the Fe(2+)-trafficking protein family.


ensembl_gene_id: c3551
symbol: mltC
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase C precursor; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.


ensembl_gene_id: c3552
symbol: nupG
gene_biotype: protein_coding
description:
  Nucleoside permease nupG; Broad-specificity transporter of purine and pyrimidine nucleosides. Driven by a proton motive force; Belongs to the major facilitator superfamily. Nucleoside:H(+) symporter (NHS) (TC 2.A.1.10) family.


ensembl_gene_id: c3553
symbol: speC
gene_biotype: protein_coding
description:
  Ornithine decarboxylase, constitutive; Escherichia coli K-12 ortholog: b2965; Escherichia coli O157:H7 ortholog: z4310.


ensembl_gene_id: c3555
symbol: yqgA
gene_biotype: protein_coding
description:
  Hypothetical protein yqgA; Escherichia coli K-12 ortholog: b2966; Escherichia coli O157:H7 ortholog: z4311.


ensembl_gene_id: c3557
symbol: c3557
gene_biotype: protein_coding
description:
  ShiA homolog; Residues 1 to 347 of 347 are 83.28 pct identical to residues 1 to 347 of 347 from GenPept.129 : >gb|AAD44731.1|AF141323_2 (AF141323) ShiA [Shigella flexneri].


ensembl_gene_id: c3559
symbol: c3559
gene_biotype: protein_coding
description:
  Hypothetical protein; Escherichia coli K-12 B4275 pseudogene; Residues 43 to 325 of 361 are 91.16 pct identical to residues 89 to 371 of 371 from SwissProt.40 : >sp|P39349|YJGX_ECOLI HYPOTHETICAL PROTEIN YJGX PRECURSOR.


ensembl_gene_id: c3562
symbol: c3562
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 135 of 135 are 83.70 pct identical to residues 1 to 135 of 461 from GenPept.129 : >gb|AAL08460.1|AF326777_35 (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c3564
symbol: c3564
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 169 to 490 of 490 are 26.31 pct identical to residues 162 to 473 of 475 from GenPept.129 : >gb|AAK81155.1|AE007818_1 (AE007818) Membrane associated histidine kinase with HAMP domain [Clostridium acetobutylicum].


ensembl_gene_id: c3565
symbol: c3565
gene_biotype: protein_coding
description:
  Putative response regulator; Residues 6 to 232 of 240 are 47.16 pct identical to residues 12 to 240 of 247 from GenPept.129 : >gb|AAD36722.1|AE001807_13 (AE001807) response regulator DrrA [Thermotoga maritima].


ensembl_gene_id: c3566
symbol: c3566
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 128 of 131 are 50.00 pct identical to residues 18 to 141 of 212 from GenPept.129 : >emb|CAD14149.1| (AL646060) PUTATIVE TRANSMEMBRANE HYDROGENASE CYTOCHROME B-TYPE SUBUNIT OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum].


ensembl_gene_id: c3567
symbol: c3567
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 42 to 278 of 278 are 54.20 pct identical to residues 11 to 248 of 257 from GenPept.129 : >emb|CAD14150.1| (AL646060) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum].


ensembl_gene_id: c3569
symbol: hlyC
gene_biotype: protein_coding
description:
  Hemolysin C; Residues 55 to 224 of 224 are 97.64 pct identical to residues 1 to 170 of 170 from SwissProt.40 : >sp|P09984|HLC1_ECOLI HEMOLYSIN-ACTIVATING LYSINE-ACYLTRANSFERASE HLYC (TOXIN-ACTIVATING PROTEIN C, J96) (HEMOLYSIN C).


ensembl_gene_id: c3570
symbol: hlyA
gene_biotype: protein_coding
description:
  Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp|P09983|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL.


ensembl_gene_id: c3573
symbol: hlyB
gene_biotype: protein_coding
description:
  Hemolysin B; Part of the ABC transporter complex HlyBD involved in hemolysin export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).


ensembl_gene_id: c3574
symbol: hlyD
gene_biotype: protein_coding
description:
  Residues 1 to 478 of 478 are 98.95 pct identical to residues 1 to 478 of 478 from SwissProt.40 : >sp|P09986|HLY4_ECOLI Hemolysin secretion protein D, chromosomal.


ensembl_gene_id: c3579
symbol: c3579
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 118 to 151 of 156 are 97.05 pct identical to residues 36 to 69 of 95 from GenPept.129 : >emb|CAC81894.1| (AJ277443) ST56 protein [Escherichia coli].


ensembl_gene_id: c3580
symbol: c3580
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 108 of 130 are 100.00 pct identical to residues 1 to 108 of 461 from GenPept.129 : >gb|AAL08460.1|AF326777_35 (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c3582
symbol: papX
gene_biotype: protein_coding
description:
  PapX protein; Residues 18 to 183 of 183 are 96.38 pct identical to residues 1 to 166 of 166 from SwissProt.40 : >sp|P42192|PRSX_ECOLI PRSX PROTEIN.


ensembl_gene_id: c3583
symbol: papG
gene_biotype: protein_coding
description:
  PapG protein; Residues 1 to 336 of 336 are 57.01 pct identical to residues 1 to 335 of 335 from SwissProt.40 : >sp|P42188|PRSG_ECOLI FIMBRIAL PROTEIN PRSG PRECURSOR (ADHESIN).


ensembl_gene_id: c3584
symbol: papF
gene_biotype: protein_coding
description:
  PapF protein; Residues 11 to 176 of 176 are 92.81 pct identical to residues 1 to 167 of 167 from SwissProt.40 : >sp|P42187|PRSF_ECOLI MINOR FIMBRIAL PROTEIN PRSF PRECURSOR.


ensembl_gene_id: c3585
symbol: papE
gene_biotype: protein_coding
description:
  PapE protein; Residues 7 to 179 of 179 are 91.32 pct identical to residues 1 to 173 of 173 from SwissProt.40 : >sp|P08407|PAPE_ECOLI FIMBRIAL PROTEIN PAPE PRECURSOR.


ensembl_gene_id: c3586
symbol: papK
gene_biotype: protein_coding
description:
  PapK protein; Adapter that links the pilus rod to the base of the tip fibrillum. Regulates the length of the tip fibrillum and joins it to the pilus rod. Pili are polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, and enable bacteria to colonize the epithelium of specific host organs (By similarity).


ensembl_gene_id: c3588
symbol: papJ
gene_biotype: protein_coding
description:
  PapJ protein; Residues 1 to 193 of 193 are 96.37 pct identical to residues 1 to 193 of 193 from SwissProt.40 : >sp|P42189|PRSJ_ECOLI PRSJ PROTEIN PRECURSOR.


ensembl_gene_id: c3589
symbol: papD
gene_biotype: protein_coding
description:
  PapD protein; Residues 1 to 201 of 201 are 41.58 pct identical to residues 46 to 246 of 250 from MG1655 : b2336.


ensembl_gene_id: c3590
symbol: papC
gene_biotype: protein_coding
description:
  PapC protein; Residues 5 to 836 of 840 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600.


ensembl_gene_id: c3591
symbol: papH
gene_biotype: protein_coding
description:
  PapH protein; Residues 1 to 195 of 195 are 98.97 pct identical to residues 1 to 195 of 195 from SwissProt.40 : >sp|P42185|PRSH_ECOLI PRS FIMBRIAL MINOR PILIN PROTEIN PRECURSOR.


ensembl_gene_id: c3592
symbol: papA
gene_biotype: protein_coding
description:
  PapA protein; Fimbriae (also called pili), polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, enable bacteria to colonize the epithelium of specific host organs; Belongs to the fimbrial protein family.


ensembl_gene_id: c3593
symbol: papI
gene_biotype: protein_coding
description:
  PapI protein; Residues 1 to 77 of 77 are 98.70 pct identical to residues 1 to 77 of 77 from SwissProt.40 : >sp|P25395|KS7A_ECOLI P FIMBRIAL REGULATORY PROTEIN KS71A.


ensembl_gene_id: c3595
symbol: c3595
gene_biotype: protein_coding
description:
  Transposase; Residues 1 to 118 of 118 are 98.30 pct identical to residues 1 to 118 of 118 from GenPept.129 : >gb|AAC61721.1| (AF081285) transposase R14 [Escherichia coli].


ensembl_gene_id: c3597
symbol: c3597
gene_biotype: protein_coding
description:
  Transposase; Residues 1 to 196 of 196 are 83.16 pct identical to residues 173 to 368 of 406 from GenPept.129 : >gb|AAF60967.1|AF188737_2 (AF188737) transposase [Escherichia coli].


ensembl_gene_id: c3599
symbol: c3599
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 86 of 86 are 100.00 pct identical to residues 1 to 86 of 86 from GenPept.129 : >gb|AAC61724.1| (AF081285) R10 [Escherichia coli].


ensembl_gene_id: c3600
symbol: c3600
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 165 of 186 are 27.54 pct identical to residues 7 to 173 of 201 from GenPept.129 : >dbj|BAB76266.1| (AP003596) transcriptional regulator [Nostoc sp. PCC 7120].


ensembl_gene_id: c3601
symbol: c3601
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 152 of 152 are 100.00 pct identical to residues 1 to 142 of 142 from GenPept.129 : >gb|AAC61725.1| (AF081285) F200 [Escherichia coli].


ensembl_gene_id: c3609
symbol: c3609
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 74 of 74 are 97.29 pct identical to residues 1 to 74 of 74 from GenPept.129 : >dbj|BAB34782.1| (AP002554) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c3611
symbol: c3611
gene_biotype: protein_coding
description:
  Transposase insD for insertion element IS2A/D/F/H/I/K; Escherichia coli K-12 ortholog: b4273; Escherichia coli O157:H7 ortholog: z1825.


ensembl_gene_id: c3613
symbol: c3613
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 44 of 52 are 75.00 pct identical to residues 47 to 90 of 116 from GenPept.129 : >gb|AAG58804.1|AE005593_6 (AE005593) unknown protein encoded by IS911 within prophage CP-933L [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c3618
symbol: c3618
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 40 to 232 of 232 are 98.44 pct identical to residues 1 to 193 of 193 from GenPept.129 : >gb|AAK00460.1| (AF200692) unknown [Shigella flexneri 2a].


ensembl_gene_id: c3619
symbol: sat
gene_biotype: protein_coding
description:
  Secreted auto transpoter toxin; Shows serine protease activity and displays cytophatic activity, including elongation, rounding, and detachment of a proportion of the cells from monolayer in culture. Triggers vacuolation within the cytoplasm of the human bladder and kidney cells.


ensembl_gene_id: c3623
symbol: iutA
gene_biotype: protein_coding
description:
  IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp|P14542|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR).


ensembl_gene_id: c3624
symbol: iucD
gene_biotype: protein_coding
description:
  IucD protein; Residues 1 to 425 of 445 are 97.88 pct identical to residues 1 to 425 of 425 from SwissProt.40 : >sp|P11295|IUCD_ECOLI L-LYSINE 6-MONOOXYGENASE (LYSINE N6-HYDROXYLASE).


ensembl_gene_id: c3625
symbol: iucC
gene_biotype: protein_coding
description:
  IucC protein; Residues 1 to 580 of 580 are 96.89 pct identical to residues 1 to 580 of 580 from SwissProt.40 : >sp|Q47318|IUCC_ECOLI AEROBACTIN SIDEROPHORE BIOSYNTHESIS PROTEIN IUCC.


ensembl_gene_id: c3626
symbol: iucB
gene_biotype: protein_coding
description:
  IucB protein; Residues 1 to 315 of 315 are 94.92 pct identical to residues 1 to 315 of 315 from SwissProt.40 : >sp|Q47317|IUCB_ECOLI AEROBACTIN SIDEROPHORE BIOSYNTHESIS PROTEIN IUCB.


ensembl_gene_id: c3627
symbol: iucA
gene_biotype: protein_coding
description:
  IucA protein; Residues 22 to 595 of 595 are 93.04 pct identical to residues 1 to 575 of 575 from SwissProt.40 : >sp|Q47316|IUCA_ECOLI AEROBACTIN SIDEROPHORE BIOSYNTHESIS PROTEIN IUCA.


ensembl_gene_id: c3628
symbol: shiF
gene_biotype: protein_coding
description:
  shiF protein; Residues 1 to 397 of 397 are 99.74 pct identical to residues 1 to 397 of 397 from GenPept.129 : >gb|AAD44744.1|AF141323_15 (AF141323) ShiF [Shigella flexneri].


ensembl_gene_id: c3633
symbol: c3633
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 55 to 310 of 312 are 37.89 pct identical to residues 73 to 327 of 328 from GenPept.129 : >gb|AAK24284.1| (AE005901) hypothetical protein [Caulobacter crescentus CB15].


ensembl_gene_id: c3634
symbol: nanM1
gene_biotype: protein_coding
description:
  Hypothetical protein yjhT precursor; Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta- anomer, accelerating the equilibrium between the alpha- and beta- anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses; Belongs to the NanM family.


ensembl_gene_id: c3635
symbol: c3635
gene_biotype: protein_coding
description:
  Hypothetical protein yjhA precursor; Escherichia coli K-12 ortholog: b4311; Escherichia coli O157:H7 ortholog: z5907.


ensembl_gene_id: c3636
symbol: c3636
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 37 to 266 of 269 are 40.65 pct identical to residues 81 to 326 of 328 from GenPept.129 : >gb|AAK24284.1| (AE005901) hypothetical protein [Caulobacter crescentus CB15].


ensembl_gene_id: c3637
symbol: nanT2
gene_biotype: protein_coding
description:
  Putative sialic acid transporter; Catalyzes the proton-dependent transport of sialic acid. Belongs to the major facilitator superfamily. Sialate:H(+) symporter (SHS) (TC 2.A.1.12) family.


ensembl_gene_id: c3638
symbol: nanK2
gene_biotype: protein_coding
description:
  Hypothetical protein yhcI; Catalyzes the phosphorylation of N-acetylmannosamine (ManNAc) to ManNAc-6-P; Belongs to the ROK (NagC/XylR) family. NanK subfamily.


ensembl_gene_id: c3639
symbol: nanA2
gene_biotype: protein_coding
description:
  N-acetylneuraminate lyase subunit; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate.


ensembl_gene_id: c3646
symbol: c3646
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 26 to 64 of 64 are 100.00 pct identical to residues 89 to 127 of 127 from GenPept.129 : >gb|AAD30026.1|AF119170_1 (AF119170) truncated BfpA [Escherichia coli].


ensembl_gene_id: c3647
symbol: c3647
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 13 to 136 of 151 are 91.12 pct identical to residues 1 to 124 of 127 from GenPept.129 : >gb|AAK00467.1| (AF200692) unknown [Shigella flexneri 2a].


ensembl_gene_id: c3648
symbol: c3648
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 189 of 189 are 39.56 pct identical to residues 6 to 235 of 246 from GenPept.129 : >gb|AAL67401.1|AF447814_69 (AF447814) intergenic-region protein [Escherichia coli].


ensembl_gene_id: c3650
symbol: c3650
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 86 of 86 are 96.05 pct identical to residues 17 to 92 of 92 from GenPept.129 : >gb|AAL08466.1| (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c3651
symbol: c3651
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 28 to 199 of 199 are 97.67 pct identical to residues 1 to 172 of 172 from GenPept.129 : >gb|AAK00471.1| (AF200692) unknown [Shigella flexneri 2a].


ensembl_gene_id: c3656
symbol: c3656
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 109 of 109 are 68.80 pct identical to residues 1 to 109 of 109 from GenPept.129 : >dbj|BAB34765.1| (AP002554) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c3658
symbol: c3658
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 13 to 298 of 533 are 71.32 pct identical to residues 1 to 277 of 285 from GenPept.129 : >gb|AAG55716.1|AE005309_6 (AE005309) unknown in ISEc8 [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c3663
symbol: c3663
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 126 of 126 are 95.23 pct identical to residues 398 to 523 of 523 from GenPept.129 : >dbj|BAA84886.1| (AB024946) orf51 [Escherichia coli].


ensembl_gene_id: c3669
symbol: c3669
gene_biotype: protein_coding
description:
  Hypothetical protein yfjX; Escherichia coli K-12 ortholog: b2643; Escherichia coli O157:H7 ortholog: z1656.


ensembl_gene_id: c3670
symbol: c3670
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 298 of 303 are 93.28 pct identical to residues 1 to 298 of 319 from GenPept.129 : >gb|AAL67347.1|AF447814_15 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c3672
symbol: c3672
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 140 to 221 of 242 are 40.24 pct identical to residues 71 to 152 of 164 from GenPept.129 : >gb|AAB08666.1| (U70214) hypothetical protein [Escherichia coli].


ensembl_gene_id: c3673
symbol: c3673
gene_biotype: protein_coding
description:
  Hypothetical protein yeeT; Escherichia coli K-12 ortholog: b2003; Escherichia coli O157:H7 ortholog: z3163.


ensembl_gene_id: c3675
symbol: c3675
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 92 to 160 of 187 are 82.60 pct identical to residues 1 to 69 of 176 from GenPept.129 : >gb|AAL67390.1|AF447814_58 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c3684
symbol: c3684
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 9 to 51 of 51 are 76.74 pct identical to residues 64 to 106 of 112 from GenPept.129 : >gb|AAK18488.1|AF348706_177 (AF348706) putative transposase [Shigella flexneri].


ensembl_gene_id: c3686
symbol: kpsF
gene_biotype: protein_coding
description:
  Hypothetical protein yrbH; Involved in the biosynthesis of K-antigen capsules. Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P). Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: c3687
symbol: kpsE
gene_biotype: protein_coding
description:
  KpsE protein; Involved in the translocation of the polysialic acid capsule. Belongs to the BexC/CtrB/KpsE family.


ensembl_gene_id: c3688
symbol: kpsD
gene_biotype: protein_coding
description:
  KpsD protein; Residues 2 to 559 of 559 are 99.46 pct identical to residues 1 to 558 of 558 from SwissProt.40 : >sp|P42213|KSD5_ECOLI POLYSIALIC ACID TRANSPORT PROTEIN KPSD PRECURSOR.


ensembl_gene_id: c3690
symbol: kpsC
gene_biotype: protein_coding
description:
  KpsC protein; Residues 1 to 675 of 675 are 96.29 pct identical to residues 1 to 675 of 675 from SwissProt.40 : >sp|P42217|KSC5_ECOLI Capsule polysaccharide export protein KPSC.


ensembl_gene_id: c3691
symbol: kpsS
gene_biotype: protein_coding
description:
  KpsS protein; Residues 1 to 389 of 412 are 97.17 pct identical to residues 1 to 389 of 389 from SwissProt.40 : >sp|P42218|KSS5_ECOLI CAPSULE POLYSACCHARIDE EXPORT PROTEIN KPSS.


ensembl_gene_id: c3693
symbol: c3693
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 332 of 342 are 23.26 pct identical to residues 225 to 543 of 543 from GenPept.129 : >gb|AAK05018.1|AE006326_9 (AE006326) UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis].


ensembl_gene_id: c3694
symbol: c3694
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 495 to 1078 of 1266 are 33.16 pct identical to residues 10 to 602 of 807 from GenPept.129 : >gb|AAK05019.1|AE006326_10 (AE006326) teichoic acid biosynthesis protein [Lactococcus lactis subsp. lactis].


ensembl_gene_id: c3695
symbol: c3695
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 210 to 367 of 411 are 29.10 pct identical to residues 50 to 232 of 246 from GenPept.129 : >dbj|BAB80328.1| (AP003187) hypothetical protein [Clostridium perfringens].


ensembl_gene_id: c3696
symbol: c3696
gene_biotype: protein_coding
description:
  Putative glycerol-3-phosphate cytidyltransferase; Residues 5 to 131 of 135 are 49.60 pct identical to residues 1 to 126 of 129 from SwissProt.40 : >sp|P27623|TAGD_BACSU Glycerol-3-phosphate cytidylyltransferase (GCT) (CDP-glycerol pyrophosphorylase) (Teichoic acid biosynthesis protein D).


ensembl_gene_id: c3697
symbol: kpsT
gene_biotype: protein_coding
description:
  KpsT protein; Residues 1 to 223 of 223 are 88.78 pct identical to residues 1 to 223 of 224 from SwissProt.40 : >sp|P24586|KST5_ECOLI POLYSIALIC ACID TRANSPORT ATP-BINDING PROTEIN KPST.


ensembl_gene_id: c3698
symbol: kpsM
gene_biotype: protein_coding
description:
  KpsM protein; Residues 1 to 258 of 258 are 96.89 pct identical to residues 1 to 258 of 258 from SwissProt.40 : >sp|P24584|KPM2_ECOLI POLYSIALIC ACID TRANSPORT PROTEIN KPSM.


ensembl_gene_id: c3699
symbol: yghD
gene_biotype: protein_coding
description:
  Putative general secretion pathway protein M-type yghD; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.


ensembl_gene_id: c3702
symbol: c3702
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 137 of 137 are 98.54 pct identical to residues 189 to 325 of 325 from GenPept.129 : >gb|AAL60191.1|AF426313_11 (AF426313) hypothetical type II secretion protein GspK [Escherichia coli].


ensembl_gene_id: c3704
symbol: yghK
gene_biotype: protein_coding
description:
  Glycolate permease glcA; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: c3705
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: c3709
symbol: glcD
gene_biotype: protein_coding
description:
  Glycolate oxidase subunit glcD; Component of a complex that catalyzes the oxidation of glycolate to glyoxylate. Is required for E.coli to grow on glycolate as a sole source of carbon. Is also able to oxidize D-lactate ((R)- lactate) with a similar rate. Does not link directly to O(2), and 2,6- dichloroindophenol (DCIP) and phenazine methosulfate (PMS) can act as artificial electron acceptors in vitro, but the physiological molecule that functions as primary electron acceptor during glycolate oxidation is unknown; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.


ensembl_gene_id: c3710
symbol: glcC
gene_biotype: protein_coding
description:
  Glc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity. Also negatively regulates the transcription of its own gene. Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector.


ensembl_gene_id: c3712
symbol: c3712
gene_biotype: protein_coding
description:
  Putative saframycin Mx1 synthetase B; Residues 15 to 561 of 576 are 43.29 pct identical to residues 11 to 560 of 567 from GenPept.129 : >gb|AAK23149.1| (AE005794) acyl-CoA synthetase [Caulobacter crescentus CB15].


ensembl_gene_id: c3713
symbol: c3713
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 287 of 304 are 33.21 pct identical to residues 9 to 288 of 317 from GenPept.129 : >gb|AAK23148.1| (AE005794) conserved hypothetical protein [Caulobacter crescentus CB15].


ensembl_gene_id: c3715
symbol: c3715
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 388 of 390 are 53.47 pct identical to residues 1 to 389 of 404 from GenPept.129 : >gb|AAK23146.1| (AE005794) aminotransferase, class II [Caulobacter crescentus CB15].


ensembl_gene_id: c3716
symbol: c3716
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 30 to 379 of 386 are 29.17 pct identical to residues 4 to 354 of 358 from GenPept.129 : >emb|CAC92669.1| (AJ414157) putative membrane protein [Yersinia pestis].


ensembl_gene_id: c3717
symbol: c3717
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 342 of 356 are 29.54 pct identical to residues 2 to 350 of 372 from GenPept.129 : >gb|AAG07215.1|AE004800_4 (AE004800) conserved hypothetical protein [Pseudomonas aeruginosa].


ensembl_gene_id: c3718
symbol: c3718
gene_biotype: protein_coding
description:
  Protein ytfJ precursor; Escherichia coli K-12 ortholog: b4216; Escherichia coli O157:H7 ortholog: z5827.


ensembl_gene_id: c3721
symbol: yghR
gene_biotype: protein_coding
description:
  Hypothetical ATP-binding protein yghR; Escherichia coli K-12 ortholog: b2984; To E.coli YghS and YghT.


ensembl_gene_id: c3724
symbol: pitB
gene_biotype: protein_coding
description:
  Probable low-affinity inorganic phosphate transporter 2; Escherichia coli K-12 ortholog: b2987; Escherichia coli O157:H7 ortholog: z4893.


ensembl_gene_id: c3725
symbol: gsp
gene_biotype: protein_coding
description:
  Glutathionylspermidine synthase; Bifunctional; Escherichia coli K-12 ortholog: b2988; Escherichia coli O157:H7 ortholog: z4342; bifunctional; Glutathionylspermidine amidase.


ensembl_gene_id: c3726
symbol: yghU
gene_biotype: protein_coding
description:
  Hypothetical GST-like protein yghU; Escherichia coli K-12 ortholog: b2989; Escherichia coli O157:H7 ortholog: z4343.


ensembl_gene_id: c3727
symbol: hybG
gene_biotype: protein_coding
description:
  Hydrogenase-2 operon protein hybG; Involved in the maturation of [NiFe] hydrogenases. Involved in the biosynthesis of the Fe(CN)(2)CO cofactor. HybG delivers iron- bound CO(2) to HypD where reduction to CO probably occurs. In complex with HypD, accepts the cyanide ligand generated by HypF and HypE, and also coordinates the carbon monoxide ligand. Belongs to the HupF/HypC family.


ensembl_gene_id: c3728
symbol: hybF
gene_biotype: protein_coding
description:
  Probable hydrogenase nickel incorporation protein hybF; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: c3729
symbol: hybE
gene_biotype: protein_coding
description:
  Hydrogenase-2 operon protein hybE; Escherichia coli K-12 ortholog: b2992; Escherichia coli O157:H7 ortholog: z4346; Belongs to the HupJ family.


ensembl_gene_id: c3730
symbol: hybD
gene_biotype: protein_coding
description:
  Hydrogenase 2 maturation protease; Escherichia coli K-12 ortholog: b2993; Escherichia coli O157:H7 ortholog: z4347.


ensembl_gene_id: c3731
symbol: hybC
gene_biotype: protein_coding
description:
  Hydrogenase-2 large chain precursor; Escherichia coli K-12 ortholog: b2994; Escherichia coli O157:H7 ortholog: z4348; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.


ensembl_gene_id: c3732
symbol: hybB
gene_biotype: protein_coding
description:
  Probable Ni/Fe-hydrogenase 2 B-type cytochrome subunit; Escherichia coli K-12 ortholog: b2995; Escherichia coli O157:H7 ortholog: z4349.


ensembl_gene_id: c3733
symbol: hybA
gene_biotype: protein_coding
description:
  Hydrogenase-2 operon protein hybA precursor; Escherichia coli K-12 ortholog: b2996; Escherichia coli O157:H7 ortholog: z4350.


ensembl_gene_id: c3734
symbol: hybO
gene_biotype: protein_coding
description:
  Hydrogenase-2 small chain precursor; This is one of three E.coli hydrogenases synthesized in response to different physiological conditions. HYD2 is involved in hydrogen uptake.


ensembl_gene_id: c3735
symbol: yghW
gene_biotype: protein_coding
description:
  Hypothetical protein yghW; Escherichia coli K-12 ortholog: b2998; Escherichia coli O157:H7 ortholog: z4352.


ensembl_gene_id: c3737
symbol: yghZ
gene_biotype: protein_coding
description:
  Hypothetical protein yghZ; Escherichia coli K-12 ortholog: b3001; Escherichia coli O157:H7 ortholog: z4354.


ensembl_gene_id: c3738
symbol: yqhA
gene_biotype: protein_coding
description:
  Hypothetical protein yqhA; Escherichia coli K-12 ortholog: b3002; Escherichia coli O157:H7 ortholog: z4355.


ensembl_gene_id: c3739
symbol: yghA
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase yghA; Escherichia coli K-12 ortholog: b3003; Escherichia coli O157:H7 ortholog: z4356.


ensembl_gene_id: c3740
symbol: exbD
gene_biotype: protein_coding
description:
  Biopolymer transport exbD protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.


ensembl_gene_id: c3741
symbol: exbB
gene_biotype: protein_coding
description:
  Biopolymer transport exbB protein; Escherichia coli K-12 ortholog: b3006; Escherichia coli O157:H7 ortholog: z4359.


ensembl_gene_id: c3742
symbol: metC
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase; Escherichia coli K-12 ortholog: b3008; Escherichia coli O157:H7 ortholog: z4361.


ensembl_gene_id: c3743
symbol: yghB
gene_biotype: protein_coding
description:
  Hypothetical protein yghB; Escherichia coli K-12 ortholog: b3009; Escherichia coli O157:H7 ortholog: z4362.


ensembl_gene_id: c3744
symbol: yqhC
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yqhC; Escherichia coli K-12 ortholog: b3010; Escherichia coli O157:H7 ortholog: z4363.


ensembl_gene_id: c3745
symbol: yqhD
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase yqhD; Escherichia coli K-12 ortholog: b3011; Escherichia coli O157:H7 ortholog: z4364.


ensembl_gene_id: c3746
symbol: c3746
gene_biotype: protein_coding
description:
  2,5-diketo-D-gluconic acid reductase A; Escherichia coli K-12 ortholog: b3012; Escherichia coli O157:H7 ortholog: z4365.


ensembl_gene_id: c3747
symbol: yqhG
gene_biotype: protein_coding
description:
  Hypothetical protein yqhG precursor; Escherichia coli K-12 ortholog: b3013; Escherichia coli O157:H7 ortholog: z4368.


ensembl_gene_id: c3748
symbol: yqhH
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yqhH precursor; Escherichia coli K-12 ortholog: b3014; Escherichia coli O157:H7 ortholog: z4369.


ensembl_gene_id: c3750
symbol: c3750
gene_biotype: protein_coding
description:
  Putative regulator; Residues 1 to 248 of 249 are 78.62 pct identical to residues 18 to 265 of 266 from GenPept.129 : >gb|AAL21959.1| (AE008842) putative regulatory protein, gntR family [Salmonella typhimurium LT2].


ensembl_gene_id: c3752
symbol: c3752
gene_biotype: protein_coding
description:
  Hypothetical zinc-type alcohol dehydrogenase-like protein yjjN; Escherichia coli K-12 ortholog: b4358; Escherichia coli O157:H7 ortholog: z5958.


ensembl_gene_id: c3754
symbol: c3754
gene_biotype: protein_coding
description:
  Putative c4-dicarboxylate transport system binding protein; Residues 1 to 327 of 327 are 84.09 pct identical to residues 1 to 327 of 327 from GenPept.129 : >gb|AAL22043.1| (AE008845) putative dicarboxylate-binding periplasmic protein [Salmonella typhimurium LT2].


ensembl_gene_id: c3755
symbol: c3755
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 158 of 160 are 78.48 pct identical to residues 1 to 158 of 160 from GenPept.129 : >gb|AAL22044.1| (AE008845) putative inner membrane protein [Salmonella typhimurium LT2].


ensembl_gene_id: c3756
symbol: ygiK
gene_biotype: protein_coding
description:
  C4-dicarboxylate permease; Residues 15 to 447 of 448 are 89.83 pct identical to residues 1 to 433 of 435 from SwissProt.40 : >sp|P40800|YGIK_SALTY Hypothetical 46.1 kDa protein in PLSC 3'region.


ensembl_gene_id: c3757
symbol: sufI
gene_biotype: protein_coding
description:
  Protein sufI precursor; Cell division protein that is required for growth during stress conditions. May be involved in protecting or stabilizing the divisomal assembly under conditions of stress; Belongs to the FtsP family.


ensembl_gene_id: c3758
symbol: plsC
gene_biotype: protein_coding
description:
  1-acyl-sn-glycerol-3-phosphate acyltransferase; Escherichia coli K-12 ortholog: b3018; Escherichia coli O157:H7 ortholog: z4372; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.


ensembl_gene_id: c3760
symbol: parC
gene_biotype: protein_coding
description:
  Topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: c3761
symbol: c3761
gene_biotype: protein_coding
description:
  Putative binding protein ygiS precursor; Escherichia coli K-12 ortholog: b3020; Escherichia coli O157:H7 ortholog: z4374.


ensembl_gene_id: c3762
symbol: ygiV
gene_biotype: protein_coding
description:
  Hypothetical protein ygiV; Escherichia coli K-12 ortholog: b3023; Escherichia coli O157:H7 ortholog: z4375.


ensembl_gene_id: c3763
symbol: ygiW
gene_biotype: protein_coding
description:
  Protein ygiW precursor; Escherichia coli K-12 ortholog: b3024; Escherichia coli O157:H7 ortholog: z4376.


ensembl_gene_id: c3764
symbol: ygiX
gene_biotype: protein_coding
description:
  Transcriptional Regulatory protein qseB; Escherichia coli K-12 ortholog: b3025; Escherichia coli O157:H7 ortholog: z4377.


ensembl_gene_id: c3765
symbol: ygiY
gene_biotype: protein_coding
description:
  Sensor protein qseC; Escherichia coli K-12 ortholog: b3026; Escherichia coli O157:H7 ortholog: z4378.


ensembl_gene_id: c3771
symbol: c3771
gene_biotype: protein_coding
description:
  Putative iron compound-binding protein of ABC transporter family; Escherichia coli O157:H7 ortholog: z4382.


ensembl_gene_id: c3772
symbol: c3772
gene_biotype: protein_coding
description:
  Putative iron compound permease protein of ABC transporter family; Escherichia coli O157:H7 ortholog: z4383; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: c3773
symbol: c3773
gene_biotype: protein_coding
description:
  Putative iron compound permease protein of ABC transporter family; Escherichia coli O157:H7 ortholog: z4384; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: c3774
symbol: c3774
gene_biotype: protein_coding
description:
  Ferric enterobactin transport ATP-binding protein fepC; Escherichia coli K-12 ortholog: b0588; Escherichia coli O157:H7 ortholog: z4385.


ensembl_gene_id: c3776
symbol: parE
gene_biotype: protein_coding
description:
  Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: c3778
symbol: icc
gene_biotype: protein_coding
description:
  Icc protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: c3779
symbol: yqiB
gene_biotype: protein_coding
description:
  Hypothetical protein yqiB; Escherichia coli K-12 ortholog: b3033; Escherichia coli O157:H7 ortholog: z4390.


ensembl_gene_id: c3780
symbol: yqiE
gene_biotype: protein_coding
description:
  ADP-ribose pyrophosphatase; Acts on ADP-mannose and ADP-glucose as well as ADP-ribose. Prevents glycogen biosynthesis. The reaction catalyzed by this enzyme is a limiting step of the gluconeogenic process (By similarity).


ensembl_gene_id: c3781
symbol: tolC
gene_biotype: protein_coding
description:
  Outer membrane protein tolC precursor; Escherichia coli K-12 ortholog: b3035; Escherichia coli O157:H7 ortholog: z4392.


ensembl_gene_id: c3782
symbol: ygiA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Escherichia coli K-12 ortholog: b3036; Escherichia coli O157:H7 ortholog: z4393.


ensembl_gene_id: c3783
symbol: ygiB
gene_biotype: protein_coding
description:
  Hypothetical protein ygiB; Escherichia coli K-12 ortholog: b3037; Escherichia coli O157:H7 ortholog: z4394; Belongs to the UPF0441 family.


ensembl_gene_id: c3784
symbol: ygiC
gene_biotype: protein_coding
description:
  Hypothetical protein ygiC; May be a ligase forming an amide bond. Shows ATPase activity (By similarity).


ensembl_gene_id: c3786
symbol: dsbL
gene_biotype: protein_coding
description:
  Putative disulfide isomerase; Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins. Part of a redox system composed of DsbI and DsbL that mediates formation of an essential disulfide bond in AssT.


ensembl_gene_id: c3787
symbol: dsbI
gene_biotype: protein_coding
description:
  Putative disulfide isomerase; Required for disulfide bond formation in some proteins. Part of a redox system composed of DsbI and DsbL that mediates formation of an essential disulfide bond in AssT; Belongs to the DsbB family. DsbI subfamily.


ensembl_gene_id: c3788
symbol: ygiD
gene_biotype: protein_coding
description:
  Hypothetical protein ygiD; Escherichia coli K-12 ortholog: b3039; Escherichia coli O157:H7 ortholog: z4396.


ensembl_gene_id: c3789
symbol: ygiE
gene_biotype: protein_coding
description:
  Zinc transporter zupT; Mediates zinc uptake. May also transport other divalent cations (By similarity); Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.


ensembl_gene_id: c3791
symbol: ygiL
gene_biotype: protein_coding
description:
  Hypothetical fimbrial-like protein ygiL precursor; Escherichia coli K-12 ortholog: b3043; Escherichia coli O157:H7 ortholog: z0872.


ensembl_gene_id: c3792
symbol: yqiG
gene_biotype: protein_coding
description:
  Hypothetical outer membrane usher protein yqiG precursor; Escherichia coli K-12 ortholog: b3046; Escherichia coli O157:H7 ortholog: z0871.


ensembl_gene_id: c3793
symbol: yqiH
gene_biotype: protein_coding
description:
  Hypothetical fimbrial chaperone yqiH precursor; Escherichia coli K-12 ortholog: b3047; Escherichia coli O157:H7 ortholog: z0869.


ensembl_gene_id: c3794
symbol: c3794
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 7 to 349 of 349 are 37.92 pct identical to residues 8 to 353 of 353 from GenPept.129 : >gb|AAG55039.1|AE005249_10 (AE005249) ybgO gene product [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c3795
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.


ensembl_gene_id: c3796
symbol: yqiC
gene_biotype: protein_coding
description:
  Hypothetical protein yqiC; Escherichia coli K-12 ortholog: b3042; Escherichia coli O157:H7 ortholog: z4400.


ensembl_gene_id: c3797
symbol: glgS
gene_biotype: protein_coding
description:
  Glycogen synthesis protein glgS; Major determinant of cell surface composition. Negatively regulates motility, adhesion and synthesis of biofilm exopolysaccharides.


ensembl_gene_id: c3798
symbol: yqiJ
gene_biotype: protein_coding
description:
  Hypothetical protein yqiJ; Escherichia coli K-12 ortholog: b3050; Escherichia coli O157:H7 ortholog: z4402.


ensembl_gene_id: c3799
symbol: yqiK
gene_biotype: protein_coding
description:
  Hypothetical protein yqiK; Escherichia coli K-12 ortholog: b3051; Escherichia coli O157:H7 ortholog: z4403.


ensembl_gene_id: c3800
symbol: hldE
gene_biotype: protein_coding
description:
  ADP-heptose synthase; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the N-terminal section; belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: c3801
symbol: glnE
gene_biotype: protein_coding
description:
  Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]


ensembl_gene_id: c3802
symbol: ygiF
gene_biotype: protein_coding
description:
  Hypothetical protein ygiF; ORFXE; Escherichia coli K-12 ortholog: b3054; Escherichia coli O157:H7 ortholog: z4407.


ensembl_gene_id: c3804
symbol: ydcM
gene_biotype: protein_coding
description:
  Hypothetical protein ydcM; Escherichia coli K-12 ortholog: b1432; Escherichia coli O157:H7 ortholog: z3664.


ensembl_gene_id: c3805
symbol: ygiM
gene_biotype: protein_coding
description:
  Hypothetical protein ygiM precursor; Escherichia coli K-12 ortholog: b3055; Escherichia coli O157:H7 ortholog: z4408.


ensembl_gene_id: c3806
symbol: cca
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.


ensembl_gene_id: c3807
symbol: bacA
gene_biotype: protein_coding
description:
  Putative undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: c3808
symbol: ygiG
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. Can use L-threo-dihydroneopterin and D-erythro-dihydroneopterin as substrates for the formation of 6- hydroxymethyldihydropterin, but it can also catalyze the epimerization of carbon 2' of dihydroneopterin to dihydromonapterin at appreciable velocity.


ensembl_gene_id: c3809
symbol: ygiH
gene_biotype: protein_coding
description:
  Hypothetical protein ygiH; Catalyzes the transfer of an acyl group from acyl-ACP to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme can also utilize acyl-CoA as fatty acyl donor, but not acyl- PO(4); Belongs to the PlsY family.


ensembl_gene_id: c3810
symbol: ygiP
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ygiP; Positive regulator required for L-tartrate-dependent anaerobic growth on glycerol. Induces expression of the ttdA-ttdB-ygjE operon (By similarity).


ensembl_gene_id: c3812
symbol: ttdA
gene_biotype: protein_coding
description:
  L(+)-tartrate dehydratase alpha subunit; Escherichia coli K-12 ortholog: b3061; Escherichia coli O157:H7 ortholog: z4414; Belongs to the class-I fumarase family.


ensembl_gene_id: c3813
symbol: ttdB
gene_biotype: protein_coding
description:
  L(+)-tartrate dehydratase beta subunit; Escherichia coli K-12 ortholog: b3062; Escherichia coli O157:H7 ortholog: z4415.


ensembl_gene_id: c3814
symbol: ygjE
gene_biotype: protein_coding
description:
  Putative tartrate carrier/transporter; Catalyzes the uptake of tartrate in exchange for intracellular succinate. Essential for anaerobic L-tartrate fermentation (By similarity).


ensembl_gene_id: c3815
symbol: ygjD
gene_biotype: protein_coding
description:
  Probable O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: c3816
symbol: rpsU
gene_biotype: protein_coding
description:
  30S ribosomal protein S21; Escherichia coli K-12 ortholog: b3065; Escherichia coli O157:H7 ortholog: z4418; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: c3817
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: c3819
symbol: c3819
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 313 of 319 are 89.00 pct identical to residues 51 to 363 of 613 from MG1655 : b3067.


ensembl_gene_id: c3821
symbol: rpoD
gene_biotype: protein_coding
description:
  RpoD protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: c3822
symbol: ygjF
gene_biotype: protein_coding
description:
  G/U mismatch-specific DNA glycosylase; Excises ethenocytosine and uracil, which can arise by alkylation or deamination of cytosine, respectively, from the corresponding mispairs with guanine in ds-DNA. It is capable of hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of the DNA and the mispaired base. The complementary strand guanine functions in substrate recognition. Required for DNA damage lesion repair in stationary-phase cells; Belongs to the uracil-DNA glycosylase (UDG) superfamily. TDG/mug family.


ensembl_gene_id: c3823
symbol: yqjH
gene_biotype: protein_coding
description:
  Hypothetical protein yqjH; Escherichia coli K-12 ortholog: b3070; Escherichia coli O157:H7 ortholog: z4423.


ensembl_gene_id: c3824
symbol: yqjI
gene_biotype: protein_coding
description:
  Hypothetical protein yqjI; Escherichia coli K-12 ortholog: b3071; Escherichia coli O157:H7 ortholog: z4424.


ensembl_gene_id: c3825
symbol: aer
gene_biotype: protein_coding
description:
  Aerotaxis receptor; Escherichia coli K-12 ortholog: b3072; Escherichia coli O157:H7 ortholog: z4425.


ensembl_gene_id: c3828
symbol: ygjG
gene_biotype: protein_coding
description:
  Probable ornithine aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate.


ensembl_gene_id: c3830
symbol: ygjH
gene_biotype: protein_coding
description:
  Hypothetical protein ygjH; Escherichia coli K-12 ortholog: b3074; Escherichia coli O157:H7 ortholog: z4427.


ensembl_gene_id: c3832
symbol: ebgR
gene_biotype: protein_coding
description:
  Ebg operon repressor; Escherichia coli K-12 ortholog: b3075; Escherichia coli O157:H7 ortholog: z4428.


ensembl_gene_id: c3833
symbol: ebgA
gene_biotype: protein_coding
description:
  Evolved beta-galactosidase alpha-subunit; Escherichia coli K-12 ortholog: b3076; Escherichia coli O157:H7 ortholog: z4429.


ensembl_gene_id: c3834
symbol: ebgC
gene_biotype: protein_coding
description:
  Evolved beta-galactosidase beta-subunit; Required for full activity of the EbgA enzyme. Exact function not known (By similarity).


ensembl_gene_id: c3836
symbol: ygjI
gene_biotype: protein_coding
description:
  Hypothetical transporter ygjI; Escherichia coli K-12 ortholog: b3078; Escherichia coli O157:H7 ortholog: z4431.


ensembl_gene_id: c3837
symbol: ygjJ
gene_biotype: protein_coding
description:
  Hypothetical protein ygjJ precursor; Escherichia coli K-12 ortholog: b3079; Escherichia coli O157:H7 ortholog: z4432.


ensembl_gene_id: c3838
symbol: ygjK
gene_biotype: protein_coding
description:
  Hypothetical protein ygjK precursor; Escherichia coli K-12 ortholog: b3080; Escherichia coli O157:H7 ortholog: z4433.


ensembl_gene_id: c3839
symbol: ygjL
gene_biotype: protein_coding
description:
  2,4-dienoyl-CoA reductase (NADPH); Escherichia coli K-12 ortholog: b3081; Escherichia coli O157:H7 ortholog: z4434.


ensembl_gene_id: c3840
symbol: higA
gene_biotype: protein_coding
description:
  Hypothetical protein ygjM; Antitoxin component of a type II toxin-antitoxin (TA) system. Functions as an mRNA interferase antitoxin.


ensembl_gene_id: c3841
symbol: c3841
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 32 to 56 of 56 are 100.00 pct identical to residues 80 to 104 of 104 from GenPept.129 : >gb|AAG58216.1|AE005538_3 (AE005538) orf, hypothetical protein [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c3842
symbol: ygjO
gene_biotype: protein_coding
description:
  Putative ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.


ensembl_gene_id: c3843
symbol: ygjP
gene_biotype: protein_coding
description:
  Hypothetical protein ygjP; Escherichia coli K-12 ortholog: b3085; Escherichia coli O157:H7 ortholog: z4438.


ensembl_gene_id: c3844
symbol: ygjQ
gene_biotype: protein_coding
description:
  Hypothetical protein ygjQ; Escherichia coli K-12 ortholog: b3086; Escherichia coli O157:H7 ortholog: z4439.


ensembl_gene_id: c3845
symbol: ygjR
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ygjR; Escherichia coli K-12 ortholog: b3087; Escherichia coli O157:H7 ortholog: z4440.


ensembl_gene_id: c3847
symbol: ygjU
gene_biotype: protein_coding
description:
  Hypothetical symporter ygjU; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: c3848
symbol: ygjV
gene_biotype: protein_coding
description:
  Hypothetical protein ygjV; Escherichia coli K-12 ortholog: b3090; Escherichia coli O157:H7 ortholog: z4443.


ensembl_gene_id: c3849
symbol: uxaA
gene_biotype: protein_coding
description:
  Altronate hydrolase; Escherichia coli K-12 ortholog: b3091; Escherichia coli O157:H7 ortholog: z4444.


ensembl_gene_id: c3851
symbol: exuT
gene_biotype: protein_coding
description:
  Hexuronate transporter; Escherichia coli K-12 ortholog: b3093; Escherichia coli O157:H7 ortholog: z4446.


ensembl_gene_id: c3852
symbol: exuR
gene_biotype: protein_coding
description:
  Exu regulon transcriptional regulator; Escherichia coli K-12 ortholog: b3094; Escherichia coli O157:H7 ortholog: z4448.


ensembl_gene_id: c3853
symbol: yqjA
gene_biotype: protein_coding
description:
  Hypothetical protein yqjA; Escherichia coli K-12 ortholog: b3095; Escherichia coli O157:H7 ortholog: z4449.


ensembl_gene_id: c3854
symbol: yqjB
gene_biotype: protein_coding
description:
  Hypothetical protein yqjB; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.


ensembl_gene_id: c3855
symbol: yqjC
gene_biotype: protein_coding
description:
  Protein yqjC precursor; Escherichia coli K-12 ortholog: b3097; Escherichia coli O157:H7 ortholog: z4451.


ensembl_gene_id: c3856
symbol: yqjD
gene_biotype: protein_coding
description:
  Hypothetical protein yqjD; Escherichia coli K-12 ortholog: b3098; Escherichia coli O157:H7 ortholog: z4452; Belongs to the ElaB/YgaM/YqjD family.


ensembl_gene_id: c3857
symbol: yqjE
gene_biotype: protein_coding
description:
  Hypothetical protein yqjE; Escherichia coli K-12 ortholog: b3099; Escherichia coli O157:H7 ortholog: z4453.


ensembl_gene_id: c3858
symbol: yqjK
gene_biotype: protein_coding
description:
  Hypothetical protein yqjK; Escherichia coli K-12 ortholog: b3100; Escherichia coli O157:H7 ortholog: z4454.


ensembl_gene_id: c3859
symbol: yqjF
gene_biotype: protein_coding
description:
  Hypothetical protein yqjF; Escherichia coli K-12 ortholog: b3101; Escherichia coli O157:H7 ortholog: z4455.


ensembl_gene_id: c3862
symbol: yhaH
gene_biotype: protein_coding
description:
  Hypothetical protein yhaH; Escherichia coli K-12 ortholog: b3103; Escherichia coli O157:H7 ortholog: z4457.


ensembl_gene_id: c3863
symbol: yhaJ
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yhaJ; Escherichia coli K-12 ortholog: b3105; Escherichia coli O157:H7 ortholog: z4459; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c3864
symbol: yhaK
gene_biotype: protein_coding
description:
  Hypothetical protein yhaK; Escherichia coli K-12 ortholog: b3106; Escherichia coli O157:H7 ortholog: z4460; Belongs to the pirin family.


ensembl_gene_id: c3866
symbol: yhaL
gene_biotype: protein_coding
description:
  Hypothetical protein yhaL; Escherichia coli K-12 ortholog: b3107; Escherichia coli O157:H7 ortholog: z4461.


ensembl_gene_id: c3867
symbol: yhaM
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Escherichia coli O157:H7 ortholog: z4462; Belongs to the UPF0597 family.


ensembl_gene_id: c3870
symbol: c3870
gene_biotype: protein_coding
description:
  L-serine dehydratase 1; Escherichia coli K-12 ortholog: b1814; Escherichia coli O157:H7 ortholog: z4464; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: c3871
symbol: yhaR
gene_biotype: protein_coding
description:
  TdcF protein; May be a post-translational regulator that controls the metabolic fate of L-threonine or the potentially toxic intermediate 2- ketobutyrate.


ensembl_gene_id: c3872
symbol: tdcE
gene_biotype: protein_coding
description:
  Keto-acid formate acetyltransferase; Escherichia coli K-12 ortholog: b3114; Escherichia coli O157:H7 ortholog: z4466.


ensembl_gene_id: c3873
symbol: tdcD-2
gene_biotype: protein_coding
description:
  Putative conserved protein; Catalyzes the conversion of propionyl phosphate and ADP to propionate and ATP.


ensembl_gene_id: c3874
symbol: tdcC
gene_biotype: protein_coding
description:
  Threonine/serine transporter; Involved in the import of threonine and serine into the cell, with the concomitant import of a proton (symport system). Belongs to the amino acid/polyamine transporter 2 family. SdaC/TdcC subfamily.


ensembl_gene_id: c3875
symbol: tdcB
gene_biotype: protein_coding
description:
  Threonine dehydratase catabolic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. TdcB also dehydrates serine to y [...]


ensembl_gene_id: c3876
symbol: tdcA
gene_biotype: protein_coding
description:
  Tdc operon transcriptional activator; Escherichia coli K-12 ortholog: b3118; Escherichia coli O157:H7 ortholog: z4470; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c3877
symbol: tdcR
gene_biotype: protein_coding
description:
  Threonine dehydratase operon activator protein; Escherichia coli K-12 ortholog: b3119; Escherichia coli O157:H7 ortholog: z4471.


ensembl_gene_id: c3878
symbol: c3878
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 4 to 41 of 42 are 87.80 pct identical to residues 1 to 41 of 186 from GenPept.129 : >emb|CAC50646.1| (AX188965) unnamed protein product [Escherichia coli].


ensembl_gene_id: c3879
symbol: yhaD
gene_biotype: protein_coding
description:
  Glycerate kinase 2; Escherichia coli K-12 ortholog: b3124; Escherichia coli O157:H7 ortholog: z4476; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: c3880
symbol: yhaE
gene_biotype: protein_coding
description:
  2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily.


ensembl_gene_id: c3881
symbol: yhaF
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxyglucarate aldolase; Catalyzes the reversible retro-aldol cleavage of both 5-keto- 4-deoxy-D-glucarate and 2-keto-3-deoxy-D-glucarate to pyruvate and tartronic semialdehyde; Belongs to the HpcH/HpaI aldolase family. KDGluc aldolase subfamily.


ensembl_gene_id: c3882
symbol: yhaU
gene_biotype: protein_coding
description:
  Probable galactarate transporter; D-galactarate permease; Escherichia coli K-12 ortholog: b3127; Escherichia coli O157:H7 ortholog: z4479.


ensembl_gene_id: c3883
symbol: yhaG
gene_biotype: protein_coding
description:
  D-galactarate dehydratase; Catalyzes the dehydration of galactarate to form 5-dehydro-4- deoxy-D-glucarate.


ensembl_gene_id: c3884
symbol: sohA
gene_biotype: protein_coding
description:
  HtrA suppressor protein; Antitoxin component of a type II toxin-antitoxin (TA) system. Labile antitoxin that binds to the YhaV toxin and neutralizes its ribonuclease activity. Also acts as a transcription factor. The YhaV/PrlF complex binds the prlF-yhaV operon, probably negatively regulating its expression (By similarity).


ensembl_gene_id: c3885
symbol: yhaV
gene_biotype: protein_coding
description:
  Hypothetical protein yhaV; Toxic component of a type II toxin-antitoxin (TA) system. Has RNase activity in vitro. Acts as a transcription factor. The YhaV/PrlF complex binds the prlF-yhaV operon, probably negatively regulating its expression (By similarity).


ensembl_gene_id: c3886
symbol: agaR
gene_biotype: protein_coding
description:
  Putative aga operon transcriptional repressor; Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism.


ensembl_gene_id: c3887
symbol: agaZ
gene_biotype: protein_coding
description:
  Putative tagatose 6-phosphate kinase agaZ; Component of the tagatose-1,6-bisphosphate aldolase KbaYZ that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of KbaY. When expressed alone, KbaZ does not show any aldolase activity.


ensembl_gene_id: c3888
symbol: agaV
gene_biotype: protein_coding
description:
  PTS system, N-acetylgalactosamine-specific IIB component 2; EIIB-AGA'; Escherichia coli K-12 ortholog: b3133; Escherichia coli O157:H7 ortholog: z4485.


ensembl_gene_id: c3890
symbol: c3890
gene_biotype: protein_coding
description:
  PTS system, N-acetylgalactosamine-specific IID component; EIID-AGA; Escherichia coli K-12 ortholog: b3140; Escherichia coli O157:H7 ortholog: z4487.


ensembl_gene_id: c3893
symbol: agaS
gene_biotype: protein_coding
description:
  Putative tagatose-6-phosphate ketose/aldose isomerase; Escherichia coli K-12 ortholog: b3136; Escherichia coli O157:H7 ortholog: z4490.


ensembl_gene_id: c3894
symbol: agaY
gene_biotype: protein_coding
description:
  Tagatose-bisphosphate aldolase agaY; Catalytic subunit of the tagatose-1,6-bisphosphate aldolase KbaYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires KbaZ subunit for full activity and stability.


ensembl_gene_id: c3895
symbol: agaB
gene_biotype: protein_coding
description:
  PTS system, N-acetylgalactosamine-specific IIB component 1; EIIB-AGA; Escherichia coli K-12 ortholog: b3138; Escherichia coli O157:H7 ortholog: z4492.


ensembl_gene_id: c3896
symbol: agaC
gene_biotype: protein_coding
description:
  PTS system, N-acetylgalactosamine-specific IIC component 1; EIIC-AGA; Escherichia coli K-12 ortholog: b3139; Escherichia coli O157:H7 ortholog: z4493.


ensembl_gene_id: c3897
symbol: agaD
gene_biotype: protein_coding
description:
  PTS system, N-acetylgalactosamine-specific IID component; EIID-AGA; Escherichia coli K-12 ortholog: b3140; Escherichia coli O157:H7 ortholog: z4494.


ensembl_gene_id: c3898
symbol: agaI
gene_biotype: protein_coding
description:
  Putative galactosamine-6-phosphate isomerase; Escherichia coli K-12 ortholog: b3141; Escherichia coli O157:H7 ortholog: z4497.


ensembl_gene_id: c3899
symbol: yraL
gene_biotype: protein_coding
description:
  Hypothetical protein yraL; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: c3900
symbol: yraM
gene_biotype: protein_coding
description:
  Hypothetical protein yraM; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a).


ensembl_gene_id: c3901
symbol: yraN
gene_biotype: protein_coding
description:
  Hypothetical protein yraN; Escherichia coli K-12 ortholog: b3148; Escherichia coli O157:H7 ortholog: z4507; Belongs to the UPF0102 family.


ensembl_gene_id: c3903
symbol: yraO
gene_biotype: protein_coding
description:
  Hypothetical protein yraO; Required for the timely initiation of chromosomal replication via direct interactions with the DnaA initiator protein. Belongs to the SIS family. DiaA subfamily.


ensembl_gene_id: c3904
symbol: yraP
gene_biotype: protein_coding
description:
  Hypothetical protein yraP precursor; Escherichia coli K-12 ortholog: b3150; Escherichia coli O157:H7 ortholog: z4509.


ensembl_gene_id: c3905
symbol: yraQ
gene_biotype: protein_coding
description:
  Hypothetical protein yraQ; Escherichia coli K-12 ortholog: b3151; Escherichia coli O157:H7 ortholog: z4510.


ensembl_gene_id: c3906
symbol: yraR
gene_biotype: protein_coding
description:
  Hypothetical protein yraR; Escherichia coli K-12 ortholog: b3152; Escherichia coli O157:H7 ortholog: z4511.


ensembl_gene_id: c3907
symbol: yhbP
gene_biotype: protein_coding
description:
  Hypothetical protein yhbP; Escherichia coli K-12 ortholog: b3154; Escherichia coli O157:H7 ortholog: z4514; Belongs to the UPF0306 family.


ensembl_gene_id: c3908
symbol: yhbQ
gene_biotype: protein_coding
description:
  Hypothetical protein yhbQ; Escherichia coli K-12 ortholog: b3155; Escherichia coli O157:H7 ortholog: z4516; Belongs to the UPF0213 family.


ensembl_gene_id: c3909
symbol: yhbS
gene_biotype: protein_coding
description:
  Hypothetical acetyltransferase yhbS; Escherichia coli K-12 ortholog: b3156; Escherichia coli O157:H7 ortholog: z4517; Belongs to the acetyltransferase family.


ensembl_gene_id: c3910
symbol: yhbT
gene_biotype: protein_coding
description:
  Hypothetical protein yhbT; Required for O(2)-independent ubiquinone (coenzyme Q) biosynthesis. Likely functions as an accessory factor. Belongs to the UbiT family.


ensembl_gene_id: c3911
symbol: yhbU
gene_biotype: protein_coding
description:
  Putative protease yhbU precursor; Escherichia coli K-12 ortholog: b3158; Escherichia coli O157:H7 ortholog: z4519.


ensembl_gene_id: c3912
symbol: yhbV
gene_biotype: protein_coding
description:
  Hypothetical protein yhbV; Escherichia coli K-12 ortholog: b3159; Escherichia coli O157:H7 ortholog: z4520.


ensembl_gene_id: c3913
symbol: yhbW
gene_biotype: protein_coding
description:
  Hypothetical protein yhbW; Escherichia coli K-12 ortholog: b3160; Escherichia coli O157:H7 ortholog: z4521; To bacterial alkanal monooxygenase alpha and beta chains.


ensembl_gene_id: c3914
symbol: mtr
gene_biotype: protein_coding
description:
  Tryptophan-specific transport protein; Tryptophan permease; Escherichia coli K-12 ortholog: b3161; Escherichia coli O157:H7 ortholog: z4522.


ensembl_gene_id: c3916
symbol: deaD
gene_biotype: protein_coding
description:
  Cold-shock DEAD-box protein A; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.


ensembl_gene_id: c3918
symbol: yhbM
gene_biotype: protein_coding
description:
  Lipoprotein nlpI precursor; May be involved in cell division. May play a role in bacterial septation or regulation of cell wall degradation during cell division (By similarity).


ensembl_gene_id: c3920
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: c3921
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.


ensembl_gene_id: c3922
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: c3923
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: c3924
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: c3926
symbol: nusA
gene_biotype: protein_coding
description:
  N utilization substance protein A; Participates in both transcription termination and antitermination.


ensembl_gene_id: c3927
symbol: yhbC
gene_biotype: protein_coding
description:
  Hypothetical protein yhbC; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: c3928
symbol: c3928
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 9 to 34 of 120 are 92.30 pct identical to residues 49 to 74 of 89 from GenPept.129 : >gb|AAK85880.1| (AE007948) AGR_C_91p [Agrobacterium tumefaciens str. C58 (Cereon)].


ensembl_gene_id: c3929
symbol: argG
gene_biotype: protein_coding
description:
  Argininosuccinate synthase; Escherichia coli K-12 ortholog: b3172; Escherichia coli O157:H7 ortholog: z4534; Belongs to the argininosuccinate synthase family. Type 2 subfamily.


ensembl_gene_id: c3930
symbol: yhbX
gene_biotype: protein_coding
description:
  Outer-membrane protein yhbX precursor; Escherichia coli K-12 ortholog: b3173; Escherichia coli O157:H7 ortholog: z4535.


ensembl_gene_id: c3931
symbol: secG
gene_biotype: protein_coding
description:
  Protein-export membrane protein secG; Involved in protein export. Participates in an early event of protein translocation (By similarity).


ensembl_gene_id: c3932
symbol: mrsA
gene_biotype: protein_coding
description:
  Protein mrsA; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: c3933
symbol: folP
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: c3936
symbol: ftsJ
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: c3937
symbol: yhbY
gene_biotype: protein_coding
description:
  Hypothetical protein yhbY; Escherichia coli K-12 ortholog: b3180; Escherichia coli O157:H7 ortholog: z4542.


ensembl_gene_id: c3938
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides (By similarity).


ensembl_gene_id: c3939
symbol: dacB
gene_biotype: protein_coding
description:
  Penicillin-binding protein 4 precursor; PBP-4; Escherichia coli K-12 ortholog: b3182; Escherichia coli O157:H7 ortholog: z4544; bifunctional; D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine-endopeptidase.


ensembl_gene_id: c3940
symbol: yhbZ
gene_biotype: protein_coding
description:
  Hypothetical GTP-binding protein yhbZ; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: c3941
symbol: yhbE
gene_biotype: protein_coding
description:
  Hypothetical transport protein yhbE; Escherichia coli K-12 ortholog: b3184; Escherichia coli O157:H7 ortholog: z4546.


ensembl_gene_id: c3942
symbol: rpmA
gene_biotype: protein_coding
description:
  50S ribosomal protein L27; Escherichia coli K-12 ortholog: b3185; Escherichia coli O157:H7 ortholog: z4547; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: c3945
symbol: ispB
gene_biotype: protein_coding
description:
  Octaprenyl-diphosphate synthase; Escherichia coli K-12 ortholog: b3187; Escherichia coli O157:H7 ortholog: z4550; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: c3946
symbol: nlp
gene_biotype: protein_coding
description:
  Sugar fermentation stimulation protein B; This protein is involved in positive regulation of the metabolism of sugars.


ensembl_gene_id: c3947
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: c3950
symbol: yrbB
gene_biotype: protein_coding
description:
  Hypothetical protein yrbB; Escherichia coli K-12 ortholog: b3191; Escherichia coli O157:H7 ortholog: z4554.


ensembl_gene_id: c3952
symbol: yrbC
gene_biotype: protein_coding
description:
  Protein yrbC precursor; Escherichia coli K-12 ortholog: b3192; Escherichia coli O157:H7 ortholog: z4555.


ensembl_gene_id: c3953
symbol: yrbD
gene_biotype: protein_coding
description:
  Hypothetical protein yrbD precursor; Escherichia coli K-12 ortholog: b3193; Escherichia coli O157:H7 ortholog: z4556.


ensembl_gene_id: c3954
symbol: yrbE
gene_biotype: protein_coding
description:
  Hypothetical protein yrbE; Part of the ABC transporter complex MlaFEDB, which is involved in a phospholipid transport pathway that maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane. Probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: c3955
symbol: yrbF
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein yrbF; Part of the ABC transporter complex MlaFEDB, which is involved in a phospholipid transport pathway that maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane. Responsible for energy coupling to the transport system.


ensembl_gene_id: c3956
symbol: yrbG
gene_biotype: protein_coding
description:
  Hypothetical protein yrbG; Escherichia coli K-12 ortholog: b3196; Escherichia coli O157:H7 ortholog: z4559.


ensembl_gene_id: c3957
symbol: kdsD
gene_biotype: protein_coding
description:
  Hypothetical protein yrbH; Involved in the biosynthesis of 3-deoxy-D-manno-octulosonate (KDO), a unique 8-carbon sugar component of lipopolysaccharides (LPSs). Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P) (By similarity).


ensembl_gene_id: c3958
symbol: yrbI
gene_biotype: protein_coding
description:
  Hypothetical protein yrbI; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.


ensembl_gene_id: c3959
symbol: yrbK
gene_biotype: protein_coding
description:
  Hypothetical protein yrbK; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.


ensembl_gene_id: c3960
symbol: yhbN
gene_biotype: protein_coding
description:
  Protein yhbN precursor; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.


ensembl_gene_id: c3961
symbol: yhbG
gene_biotype: protein_coding
description:
  Probable ABC transporter ATP-binding protein yhbG; Part of the ABC transporter complex LptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. Probably responsible for energy coupling to the transport system (By similarity).


ensembl_gene_id: c3962
symbol: rpoN
gene_biotype: protein_coding
description:
  RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: c3963
symbol: yhbH
gene_biotype: protein_coding
description:
  Probable sigma(54) modulation protein; During stationary phase, promotes and stabilizes dimerization of 70S ribosomes by the ribosome modulation factor (RMF), leading to the formation of inactive 100S ribosomes.


ensembl_gene_id: c3964
symbol: ptsN
gene_biotype: protein_coding
description:
  Nitrogen regulatory IIA protein; Escherichia coli K-12 ortholog: b3204; Escherichia coli O157:H7 ortholog: z4567.


ensembl_gene_id: c3965
symbol: yhbJ
gene_biotype: protein_coding
description:
  Hypothetical protein yhbJ; Modulates the synthesis of GlmS, by affecting the processing and stability of the regulatory small RNA GlmZ. When glucosamine-6- phosphate (GlcN6P) concentrations are high in the cell, RapZ binds GlmZ and targets it to cleavage by RNase E. Consequently, GlmZ is inactivated and unable to activate GlmS synthesis. Under low GlcN6P concentrations, RapZ is sequestered and inactivated by an other regulatory small RNA, GlmY, preventing GlmZ degradation and leading to synthesis of GlmS; Belongs to the RapZ-like family. RapZ subfamily.


ensembl_gene_id: c3966
symbol: ptsO
gene_biotype: protein_coding
description:
  Phosphocarrier protein NPr; Component of the phosphoenolpyruvate-dependent nitrogen- metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein NPr by enzyme I-Ntr. Phospho-NPr then transfers it to EIIA-Ntr. Could function in the transcriptional regulation of sigma-54 dependent operons in conjunction with the NPr (PtsO) and EIIA-Ntr (PtsN) proteins; Belongs to the HPr family.


ensembl_gene_id: c3967
symbol: yrbL
gene_biotype: protein_coding
description:
  Hypothetical protein yrbL; Escherichia coli K-12 ortholog: b3207; Escherichia coli O157:H7 ortholog: z4570.


ensembl_gene_id: c3968
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: c3969
symbol: yhbL
gene_biotype: protein_coding
description:
  Enhancing lycopene biosynthesis protein 2; Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate; Belongs to the peptidase C56 family.


ensembl_gene_id: c3970
symbol: arcB
gene_biotype: protein_coding
description:
  Aerobic respiration control sensor protein arcB; Escherichia coli K-12 ortholog: b3210; Escherichia coli O157:H7 ortholog: z4574.


ensembl_gene_id: c3971
symbol: yhcC
gene_biotype: protein_coding
description:
  Hypothetical protein yhcC; Escherichia coli K-12 ortholog: b3211; Escherichia coli O157:H7 ortholog: z4575.


ensembl_gene_id: c3973
symbol: gltB
gene_biotype: protein_coding
description:
  Glutamate synthase [NADPH] large chain precursor; Escherichia coli K-12 ortholog: b3212; Escherichia coli O157:H7 ortholog: z4576.


ensembl_gene_id: c3974
symbol: gltD
gene_biotype: protein_coding
description:
  Glutamate synthase [NADPH] small chain; Escherichia coli K-12 ortholog: b3213; Escherichia coli O157:H7 ortholog: z4577.


ensembl_gene_id: c3975
symbol: yhcH
gene_biotype: protein_coding
description:
  Hypothetical protein yhcH; Escherichia coli K-12 ortholog: b3221; Escherichia coli O157:H7 ortholog: z4579.


ensembl_gene_id: c3977
symbol: yhcJ
gene_biotype: protein_coding
description:
  Hypothetical protein yhcJ; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).


ensembl_gene_id: c3980
symbol: yhcK
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yhcK; Transcriptional repressor that controls expression of the genes required for the catabolism of sialic acids.


ensembl_gene_id: c3981
symbol: sspB
gene_biotype: protein_coding
description:
  Stringent starvation protein B; Escherichia coli K-12 ortholog: b3228; Escherichia coli O157:H7 ortholog: z4586.


ensembl_gene_id: c3982
symbol: sspA
gene_biotype: protein_coding
description:
  Stringent starvation protein A; Forms an equimolar complex with the RNA polymerase holoenzyme (RNAP) but not with the core enzyme.


ensembl_gene_id: c3984
symbol: rpsI
gene_biotype: protein_coding
description:
  30S ribosomal protein S9; Escherichia coli K-12 ortholog: b3230; Escherichia coli O157:H7 ortholog: z4588.


ensembl_gene_id: c3985
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: c3987
symbol: yhcB
gene_biotype: protein_coding
description:
  Hypothetical protein yhcB; Escherichia coli K-12 ortholog: b3233; Escherichia coli O157:H7 ortholog: z4592; To H.influenzae HI_1628.


ensembl_gene_id: c3989
symbol: degQ
gene_biotype: protein_coding
description:
  Protease degQ precursor; Escherichia coli K-12 ortholog: b3234; Escherichia coli O157:H7 ortholog: z4593; Belongs to the peptidase S1C family.


ensembl_gene_id: c3990
symbol: degS
gene_biotype: protein_coding
description:
  Protease degS precursor; Escherichia coli K-12 ortholog: b3235; Escherichia coli O157:H7 ortholog: z4594.


ensembl_gene_id: c3993
symbol: yhcN
gene_biotype: protein_coding
description:
  Hypothetical protein yhcN precursor; Escherichia coli K-12 ortholog: b3238; Escherichia coli O157:H7 ortholog: z4597.


ensembl_gene_id: c3994
symbol: yhcO
gene_biotype: protein_coding
description:
  Hypothetical protein yhcO; Escherichia coli K-12 ortholog: b3239; Escherichia coli O157:H7 ortholog: z4598; Belongs to the barstar family.


ensembl_gene_id: c3995
symbol: yhcP
gene_biotype: protein_coding
description:
  Hypothetical protein yhcP; Forms an efflux pump with AaeA. Could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell.


ensembl_gene_id: c3997
symbol: yhcR
gene_biotype: protein_coding
description:
  Hypothetical protein yhcR; Escherichia coli K-12 ortholog: b3242; Escherichia coli O157:H7 ortholog: z4601; Belongs to the AaeX family.


ensembl_gene_id: c3999
symbol: tldD
gene_biotype: protein_coding
description:
  TldD protein; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA) (By similarity).


ensembl_gene_id: c4000
symbol: yhdP
gene_biotype: protein_coding
description:
  Hypothetical protein yhdP; Escherichia coli K-12 ortholog: b3245; Escherichia coli O157:H7 ortholog: z4604.


ensembl_gene_id: c4001
symbol: cafA
gene_biotype: protein_coding
description:
  Ribonuclease G; Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure (By similarity).


ensembl_gene_id: c4002
symbol: yhdE
gene_biotype: protein_coding
description:
  Maf-like protein yhdE; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: c4003
symbol: mreD
gene_biotype: protein_coding
description:
  Rod shape-determining protein mreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins (By similarity); Belongs to the MreD family.


ensembl_gene_id: c4005
symbol: mreC
gene_biotype: protein_coding
description:
  Rod shape-determining protein mreC; Escherichia coli K-12 ortholog: b3250; Escherichia coli O157:H7 ortholog: z4609.


ensembl_gene_id: c4006
symbol: mreB
gene_biotype: protein_coding
description:
  Rod shape-determining protein mreB; Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.


ensembl_gene_id: c4008
symbol: yhdA
gene_biotype: protein_coding
description:
  Hypothetical protein yhdA; Escherichia coli K-12 ortholog: b3252; Escherichia coli O157:H7 ortholog: z4611.


ensembl_gene_id: c4011
symbol: accB
gene_biotype: protein_coding
description:
  Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: c4012
symbol: accC
gene_biotype: protein_coding
description:
  Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: c4013
symbol: c4013
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 10 to 332 of 348 are 34.70 pct identical to residues 18 to 355 of 355 from GenPept.129 : >emb|CAB55728.1| (AL117387) hypothetical protein SCF41.25 [Streptomyces coelicolor A3(2)].


ensembl_gene_id: c4014
symbol: c4014
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 4 to 312 of 320 are 54.98 pct identical to residues 5 to 315 of 315 from GenPept.129 : >gb|AAL22123.1| (AE008850) putative sugar kinase, ribokinase family [Salmonella typhimurium LT2].


ensembl_gene_id: c4015
symbol: c4015
gene_biotype: protein_coding
description:
  Ribose transport system permease protein rbsC; Escherichia coli K-12 ortholog: b3750; Escherichia coli O157:H7 ortholog: z5690; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: c4016
symbol: c4016
gene_biotype: protein_coding
description:
  Ribose transport ATP-binding protein rbsA; Escherichia coli K-12 ortholog: b3749; Escherichia coli O157:H7 ortholog: z5250.


ensembl_gene_id: c4017
symbol: c4017
gene_biotype: protein_coding
description:
  Putative ribose ABC transporter; Ribose-binding protein; Residues 5 to 298 of 298 are 60.67 pct identical to residues 2 to 296 of 296 from GenPept.129 : >emb|CAC49355.1| (AL603645) putative sugar uptake ABC transporter periplasmic solute-binding protein precursor [Sinorhizobium meliloti].


ensembl_gene_id: c4018
symbol: c4018
gene_biotype: protein_coding
description:
  Tagatose-bisphosphate aldolase gatY; Escherichia coli K-12 ortholog: b2096; Escherichia coli O157:H7 ortholog: z3259.


ensembl_gene_id: c4020
symbol: c4020
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 8 to 270 of 276 are 42.00 pct identical to residues 3 to 270 of 277 from GenPept.129 : >gb|AAL22124.1| (AE008850) aga operon transcriptional repressor (DeoR family) [Salmonella typhimurium LT2].


ensembl_gene_id: c4021
symbol: c4021
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 22 to 335 of 336 are 56.68 pct identical to residues 4 to 313 of 315 from GenPept.129 : >gb|AAL22123.1| (AE008850) putative sugar kinase, ribokinase family [Salmonella typhimurium LT2].


ensembl_gene_id: c4022
symbol: yhdT
gene_biotype: protein_coding
description:
  Hypothetical protein yhdT; Escherichia coli K-12 ortholog: b3257; Escherichia coli O157:H7 ortholog: z4617.


ensembl_gene_id: c4023
symbol: panF
gene_biotype: protein_coding
description:
  Sodium/pantothenate symporter; Pantothenate permease; Escherichia coli K-12 ortholog: b3258; Escherichia coli O157:H7 ortholog: z4618; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: c4024
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: c4026
symbol: yhdG
gene_biotype: protein_coding
description:
  Hypothetical protein yhdG; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.


ensembl_gene_id: c4027
symbol: fis
gene_biotype: protein_coding
description:
  DNA-binding protein fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.


ensembl_gene_id: c4028
symbol: yhdJ
gene_biotype: protein_coding
description:
  Hypothetical adenine-specific methylase yhdJ; Escherichia coli K-12 ortholog: b3262; Escherichia coli O157:H7 ortholog: z4622; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: c4029
symbol: yhdU
gene_biotype: protein_coding
description:
  Hypothetical protein yhdU; Escherichia coli K-12 ortholog: b3263; Escherichia coli O157:H7 ortholog: z4623.


ensembl_gene_id: c4030
symbol: envR
gene_biotype: protein_coding
description:
  Potential acrEF/envCD operon repressor; Escherichia coli K-12 ortholog: b3264; Escherichia coli O157:H7 ortholog: z4624.


ensembl_gene_id: c4031
symbol: acrE
gene_biotype: protein_coding
description:
  Acriflavine resistance protein E precursor; Protein envC; Escherichia coli K-12 ortholog: b3265; Escherichia coli O157:H7 ortholog: z4625; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: c4032
symbol: acrF
gene_biotype: protein_coding
description:
  Acriflavine resistance protein F; Protein envD; Escherichia coli K-12 ortholog: b3266; Escherichia coli O157:H7 ortholog: z0576.


ensembl_gene_id: c4033
symbol: yhdV
gene_biotype: protein_coding
description:
  Hypothetical protein yhdV; Escherichia coli K-12 ortholog: b3267; Escherichia coli O157:H7 ortholog: z4628.


ensembl_gene_id: c4034
symbol: yhdW
gene_biotype: protein_coding
description:
  Putative amino-acid ABC transporter binding protein yhdW precursor; Escherichia coli K-12 ortholog: b3268; Escherichia coli O157:H7 ortholog: z4629; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: c4035
symbol: yhdX
gene_biotype: protein_coding
description:
  Hypothetical amino-acid ABC transporter permease protein yhdX; Escherichia coli K-12 ortholog: b3269; Escherichia coli O157:H7 ortholog: z4630.


ensembl_gene_id: c4036
symbol: yhdY
gene_biotype: protein_coding
description:
  Hypothetical amino-acid ABC transporter permease protein yhdY; Escherichia coli K-12 ortholog: b3270; Escherichia coli O157:H7 ortholog: z4631.


ensembl_gene_id: c4037
symbol: yhdZ
gene_biotype: protein_coding
description:
  Hypothetical amino-acid ABC transporter ATP-binding protein yhdZ; Escherichia coli K-12 ortholog: b3271; Escherichia coli O157:H7 ortholog: z4632.


ensembl_gene_id: c4041
symbol: yrdB
gene_biotype: protein_coding
description:
  Hypothetical protein yrdB; Escherichia coli K-12 ortholog: b3280; Escherichia coli O157:H7 ortholog: z4651.


ensembl_gene_id: c4042
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


