# geneInfo

ensembl_gene_id: c0002
symbol: c0002
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 125 of 125 are 94.35 pct identical to residues 29 to 152 of 152 from SwissProt.40 : >sp|Q57334|T200_SALTY Transposase for insertion sequence element IS200.


ensembl_gene_id: c0003
symbol: thrA
gene_biotype: protein_coding
description:
  Bifunctional; Escherichia coli K-12 ortholog: b0002; Escherichia coli O157:H7 ortholog: z0002; bifunctional; Homoserine dehydrogenase I; In the C-terminal section; belongs to the homoserine dehydrogenase family.


ensembl_gene_id: c0004
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: c0005
symbol: thrC
gene_biotype: protein_coding
description:
  Threonine synthase; Escherichia coli K-12 ortholog: b0004; Escherichia coli O157:H7 ortholog: z0004.


ensembl_gene_id: c0007
symbol: yaaX
gene_biotype: protein_coding
description:
  Hypothetical protein yaaX precursor; Escherichia coli K-12 ortholog: b0005; Escherichia coli O157:H7 ortholog: z0005.


ensembl_gene_id: c0010
symbol: yaaA
gene_biotype: protein_coding
description:
  Protein yaaA; Escherichia coli K-12 ortholog: b0006; Escherichia coli O157:H7 ortholog: z0006; Belongs to the UPF0246 family.


ensembl_gene_id: c0011
symbol: yaaJ
gene_biotype: protein_coding
description:
  Putative transporter yaaJ; Escherichia coli K-12 ortholog: b0007; Escherichia coli O157:H7 ortholog: z0007.


ensembl_gene_id: c0012
symbol: talB
gene_biotype: protein_coding
description:
  Transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.


ensembl_gene_id: c0013
symbol: mog
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis mog protein; Escherichia coli K-12 ortholog: b0009; Escherichia coli O157:H7 ortholog: z0009.


ensembl_gene_id: c0014
symbol: c0014
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 45 of 45 are 71.11 pct identical to residues 1 to 45 of 256 from GenPept.129 : >gb|AAB40782.1| (U82598) enterobactin synthetase component D [Escherichia coli].


ensembl_gene_id: c0015
symbol: yaaH
gene_biotype: protein_coding
description:
  Hypothetical protein yaaH; Escherichia coli K-12 ortholog: b0010; Escherichia coli O157:H7 ortholog: z0010.


ensembl_gene_id: c0016
symbol: yaaW
gene_biotype: protein_coding
description:
  Hypothetical protein yaaW; Escherichia coli K-12 ortholog: b0011; Escherichia coli O157:H7 ortholog: z0011.


ensembl_gene_id: c0017
symbol: yaaI
gene_biotype: protein_coding
description:
  Hypothetical protein yaaI precursor; Escherichia coli K-12 ortholog: b0013; Escherichia coli O157:H7 ortholog: z0013; Belongs to the UPF0412 family.


ensembl_gene_id: c0018
symbol: c0018
gene_biotype: protein_coding
description:
  Putative glutamate dehydrogenase; Residues 35 to 675 of 678 are 31.91 pct identical to residues 331 to 954 of 959 from GenPept.129 : >gb|AAG23119.1| (AF069527) putative glutamate dehydrogenase [Haloferax mediterranei].


ensembl_gene_id: c0020
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: c0021
symbol: c0021
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 5 to 253 of 253 are 30.79 pct identical to residues 2 to 254 of 254 from MG1655 : b2408.


ensembl_gene_id: c0022
symbol: c0022
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 13 to 509 of 509 are 87.92 pct identical to residues 1 to 497 of 497 from GenPept.129 : >gb|AAL18999.1| (AE008695) putative arylsulfatase [Salmonella typhimurium LT2].


ensembl_gene_id: c0023
symbol: c0023
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 411 of 419 are 67.15 pct identical to residues 3 to 413 of 417 from GenPept.129 : >gb|AAL19001.1| (AE008695) putative cytoplasmic protein [Salmonella typhimurium LT2].


ensembl_gene_id: c0024
symbol: nhaA
gene_biotype: protein_coding
description:
  Na(+)/H(+) antiporter 1; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: c0025
symbol: nhaR
gene_biotype: protein_coding
description:
  Transcriptional activator protein nhaR; Na+/H+ antiporter regulatory protein; Escherichia coli K-12 ortholog: b0020; Escherichia coli O157:H7 ortholog: z0019; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c0028
symbol: yaaY
gene_biotype: protein_coding
description:
  Hypothetical protein yaaY; Escherichia coli K-12 ortholog: b0024; Escherichia coli O157:H7 ortholog: z0028.


ensembl_gene_id: c0029
symbol: ribF
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein ribF; Catalyzes the phosphorylation of riboflavin to FMN followed by the adenylation of FMN to FAD.


ensembl_gene_id: c0030
symbol: ileS
gene_biotype: protein_coding
description:
  Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: c0031
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: c0032
symbol: slpA
gene_biotype: protein_coding
description:
  FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. Substrate specificity carried out with 'Suc-Ala-Xaa-Pro-Phe-4-nitroanilide', where Xaa is the amino acid tested, was found to be Phe > Leu >> Ile > Lys = Ala > Trp > His >> Gln (By similarity).


ensembl_gene_id: c0033
symbol: lytB
gene_biotype: protein_coding
description:
  IspH protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.


ensembl_gene_id: c0036
symbol: c0036
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 6 to 117 of 121 are 38.05 pct identical to residues 7 to 107 of 116 from GenPept.129 : >gb|AAF96824.1| (AE004420) conserved hypothetical protein [Vibrio cholerae].


ensembl_gene_id: c0037
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: c0040
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase small chain; Escherichia coli K-12 ortholog: b0032; Escherichia coli O157:H7 ortholog: z0037; Belongs to the CarA family.


ensembl_gene_id: c0041
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase large chain; Escherichia coli K-12 ortholog: b0033; Escherichia coli O157:H7 ortholog: z0038.


ensembl_gene_id: c0043
symbol: caiF
gene_biotype: protein_coding
description:
  Transcriptional activatory protein caiF; Escherichia coli K-12 ortholog: b0034; Escherichia coli O157:H7 ortholog: z0040.


ensembl_gene_id: c0044
symbol: caiE
gene_biotype: protein_coding
description:
  Carnitine operon protein caiE; Overproduction of CaiE stimulates the activity of CaiB and CaiD; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: c0045
symbol: caiD
gene_biotype: protein_coding
description:
  Carnitinyl-CoA dehydratase; Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.


ensembl_gene_id: c0046
symbol: caiC
gene_biotype: protein_coding
description:
  Probable crotonobetaine/carnitine-CoA ligase; Catalyzes the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the CaiB reaction cycle. Also has activity toward crotonobetaine and gamma-butyrobetaine.


ensembl_gene_id: c0047
symbol: caiB
gene_biotype: protein_coding
description:
  Crotonobetainyl-CoA:carnitine CoA-transferase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.


ensembl_gene_id: c0048
symbol: caiA
gene_biotype: protein_coding
description:
  Crotonobetainyl-CoA dehydrogenase; Catalyzes the reduction of crotonobetainyl-CoA to gamma- butyrobetainyl-CoA; Belongs to the acyl-CoA dehydrogenase family.


ensembl_gene_id: c0049
symbol: caiT
gene_biotype: protein_coding
description:
  Probable carnitine transporter; Catalyzes the exchange of L-carnitine for gamma-butyrobetaine and related betaines.


ensembl_gene_id: c0053
symbol: fixC
gene_biotype: protein_coding
description:
  FixC protein; Could be part of an electron transfer system required for anaerobic carnitine reduction; Belongs to the ETF-QO/FixC family.


ensembl_gene_id: c0054
symbol: fixX
gene_biotype: protein_coding
description:
  Ferredoxin-like protein; Could be part of an electron transfer system required for anaerobic carnitine reduction. Could be a 3Fe-4S cluster-containing protein (By similarity).


ensembl_gene_id: c0055
symbol: yaaU
gene_biotype: protein_coding
description:
  Hypothetical metabolite transport protein yaaU; Escherichia coli K-12 ortholog: b0045; Escherichia coli O157:H7 ortholog: z0051.


ensembl_gene_id: c0056
symbol: yabF
gene_biotype: protein_coding
description:
  Putative NAD(P)H oxidoreductase yabF; Regulatory subunit of a potassium efflux system that confers protection against electrophiles. Required for full activity of KefC. Shows redox enzymatic activity, but this enzymatic activity is not required for activation of KefC; Belongs to the NAD(P)H dehydrogenase (quinone) family. KefF subfamily.


ensembl_gene_id: c0057
symbol: kefC
gene_biotype: protein_coding
description:
  Glutathione-regulated potassium-efflux system protein kefC; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.


ensembl_gene_id: c0058
symbol: folA
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis (By similarity).


ensembl_gene_id: c0059
symbol: c0059
gene_biotype: protein_coding
description:
  Putative antitoxin of gyrase inhibiting toxin-antitoxin system; Escherichia coli O157:H7 ortholog: z0056.


ensembl_gene_id: c0060
symbol: c0060
gene_biotype: protein_coding
description:
  Putative toxin of gyrase inhibiting toxin-antitoxin system; Escherichia coli O157:H7 ortholog: z0057.


ensembl_gene_id: c0061
symbol: apaH
gene_biotype: protein_coding
description:
  Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP.


ensembl_gene_id: c0064
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: c0065
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: c0066
symbol: surA
gene_biotype: protein_coding
description:
  Survival protein surA precursor; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.


ensembl_gene_id: c0067
symbol: imp
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Belongs to the LptD family.


ensembl_gene_id: c0068
symbol: yabH
gene_biotype: protein_coding
description:
  DnaJ-like protein djlA; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host.


ensembl_gene_id: c0069
symbol: yabO
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase A; Dual specificity enzyme that catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: c0070
symbol: hepA
gene_biotype: protein_coding
description:
  RNA polymerase associated protein; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.


ensembl_gene_id: c0072
symbol: c0072
gene_biotype: protein_coding
description:
  Transposase; Residues 18 to 169 of 169 are 94.07 pct identical to residues 1 to 152 of 152 from SwissProt.40 : >sp|Q57334|T200_SALTY Transposase for insertion sequence element IS200.


ensembl_gene_id: c0073
symbol: araD
gene_biotype: protein_coding
description:
  L-ribulose-5-phosphate 4-epimerase; Involved in the degradation of L-arabinose. Catalyzes the interconversion of L-ribulose 5-phosphate (LRu5P) and D-xylulose 5- phosphate (D-Xu5P) via a retroaldol/aldol mechanism (carbon-carbon bond cleavage analogous to a class II aldolase reaction).


ensembl_gene_id: c0076
symbol: araC
gene_biotype: protein_coding
description:
  Arabinose operon Regulatory protein; Escherichia coli K-12 ortholog: b0064; Escherichia coli O157:H7 ortholog: z0073.


ensembl_gene_id: c0077
symbol: c0077
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 40 of 40 are 66.66 pct identical to residues 308 to 343 of 343 from GenPept.129 : >gb|AAL72384.1| (AF386526) hypothetical protein [Shigella flexneri 2a].


ensembl_gene_id: c0078
symbol: c0078
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 76 of 78 are 38.46 pct identical to residues 1 to 72 of 231 from GenPept.129 : >emb|CAC92308.1| (AJ414155) hypothetical protein [Yersinia pestis].


ensembl_gene_id: c0079
symbol: c0079
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 14 to 125 of 190 are 44.64 pct identical to residues 54 to 164 of 189 from GenPept.129 : >emb|CAC90441.1| (AJ414149) hypothetical protein [Yersinia pestis].


ensembl_gene_id: c0081
symbol: yabI
gene_biotype: protein_coding
description:
  Hypothetical protein yabI; Escherichia coli K-12 ortholog: b0065; Escherichia coli O157:H7 ortholog: z0074.


ensembl_gene_id: c0082
symbol: yabJ
gene_biotype: protein_coding
description:
  Thiamine transport ATP-binding protein thiQ; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.


ensembl_gene_id: c0083
symbol: yabK
gene_biotype: protein_coding
description:
  Thiamine transport system permease protein thiP; Escherichia coli K-12 ortholog: b0067; Escherichia coli O157:H7 ortholog: z0076.


ensembl_gene_id: c0084
symbol: tbpA
gene_biotype: protein_coding
description:
  Thiamine-binding periplasmic protein precursor; Escherichia coli K-12 ortholog: b0068; Escherichia coli O157:H7 ortholog: z0077.


ensembl_gene_id: c0085
symbol: yabN
gene_biotype: protein_coding
description:
  Hypothetical protein yabN; Activates the small RNA gene sgrS under glucose-phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding these molecules in its C-terminal solute-binding domain.


ensembl_gene_id: c0086
symbol: c0086
gene_biotype: protein_coding
description:
  Transposase; Residues 18 to 169 of 169 are 95.39 pct identical to residues 1 to 152 of 152 from SwissProt.40 : >sp|Q57334|T200_SALTY Transposase for insertion sequence element IS200.


ensembl_gene_id: c0087
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: c0089
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: c0090
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.


ensembl_gene_id: c0091
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: c0093
symbol: leuO
gene_biotype: protein_coding
description:
  Probable activator protein in leuABCD operon; Escherichia coli K-12 ortholog: b0076; Escherichia coli O157:H7 ortholog: z0086; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c0095
symbol: ilvI
gene_biotype: protein_coding
description:
  Acetolactate synthase isozyme III large subunit; Escherichia coli K-12 ortholog: b0077; Escherichia coli O157:H7 ortholog: z0087.


ensembl_gene_id: c0096
symbol: ilvH
gene_biotype: protein_coding
description:
  Acetolactate synthase isozyme III small subunit; Escherichia coli K-12 ortholog: b0078; Escherichia coli O157:H7 ortholog: z0088.


ensembl_gene_id: c0098
symbol: fruR
gene_biotype: protein_coding
description:
  Fructose repressor; Global transcriptional regulator, which plays an important role in the regulation of carbon metabolism.


ensembl_gene_id: c0099
symbol: yabB
gene_biotype: protein_coding
description:
  Protein mraZ; Negatively regulates its own expression and that of the subsequent genes in the proximal part of the division and cell wall (dcw) gene cluster. Acts by binding directly to DNA. May also regulate the expression of genes outside the dcw cluster.


ensembl_gene_id: c0100
symbol: yabC
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase mraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: c0101
symbol: ftsL
gene_biotype: protein_coding
description:
  Cell division protein ftsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: c0102
symbol: ftsI
gene_biotype: protein_coding
description:
  Peptidoglycan synthetase ftsI precursor; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.


ensembl_gene_id: c0103
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: c0104
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: c0105
symbol: mraY
gene_biotype: protein_coding
description:
  Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: c0106
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: c0107
symbol: ftsW
gene_biotype: protein_coding
description:
  Cell division protein ftsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.


ensembl_gene_id: c0108
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: c0110
symbol: ddlB
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase B; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: c0111
symbol: ftsQ
gene_biotype: protein_coding
description:
  Cell division protein ftsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.


ensembl_gene_id: c0112
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein ftsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring.


ensembl_gene_id: c0113
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein ftsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: c0114
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: c0115
symbol: yacA
gene_biotype: protein_coding
description:
  Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.


ensembl_gene_id: c0116
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase secA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: c0117
symbol: mutT
gene_biotype: protein_coding
description:
  Mutator mutT protein; 7,8-dihydro-8-oxoguanine-triphosphatase; Escherichia coli K-12 ortholog: b0099; Escherichia coli O157:H7 ortholog: z0109; Belongs to the Nudix hydrolase family.


ensembl_gene_id: c0118
symbol: c0118
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 173 of 173 are 99.42 pct identical to residues 1 to 173 of 173 from SwissProt.40 : >sp|Q47309|YI9A_ECOLI INSERTION ELEMENT IS1397 HYPOTHETICAL 20.1 KD PROTEIN (ORFA).


ensembl_gene_id: c0119
symbol: c0119
gene_biotype: protein_coding
description:
  Putative Transposase insK for insertion sequence element IS150; Escherichia coli K-12 ortholog: b3558.


ensembl_gene_id: c0121
symbol: yacG
gene_biotype: protein_coding
description:
  Hypothetical protein yacG; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.


ensembl_gene_id: c0122
symbol: yacF
gene_biotype: protein_coding
description:
  Hypothetical protein yacF; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.


ensembl_gene_id: c0123
symbol: yacE
gene_biotype: protein_coding
description:
  Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: c0124
symbol: guaC
gene_biotype: protein_coding
description:
  GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides (By similarity).


ensembl_gene_id: c0125
symbol: hofC
gene_biotype: protein_coding
description:
  Protein transport protein hofC; Escherichia coli K-12 ortholog: b0106; Escherichia coli O157:H7 ortholog: z0116.


ensembl_gene_id: c0126
symbol: hofB
gene_biotype: protein_coding
description:
  Protein transport protein hofB; Escherichia coli K-12 ortholog: b0107; Escherichia coli O157:H7 ortholog: z0117.


ensembl_gene_id: c0127
symbol: ppdD
gene_biotype: protein_coding
description:
  Prepilin peptidase dependent protein D precursor; Escherichia coli K-12 ortholog: b0108; Escherichia coli O157:H7 ortholog: z0118.


ensembl_gene_id: c0128
symbol: nadC
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide pyrophosphorylase (carboxylating); Escherichia coli K-12 ortholog: b0109; Escherichia coli O157:H7 ortholog: z0119; Belongs to the NadC/ModD family.


ensembl_gene_id: c0131
symbol: aroP
gene_biotype: protein_coding
description:
  Aromatic amino acid transport protein aroP; Permease that is involved in the transport across the cytoplasmic membrane of the aromatic amino acids (phenylalanine, tyrosine, and tryptophan); Belongs to the amino acid-polyamine-organocation (APC) superfamily. Amino acid transporter (AAT) (TC 2.A.3.1) family.


ensembl_gene_id: c0133
symbol: c0133
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 95 of 98 are 45.16 pct identical to residues 2 to 85 of 87 from SwissProt.40 : >sp|Q03708|IMM7_ECOLI COLICIN E7 IMMUNITY PROTEIN (IMME7) (MICROCIN E7 IMMUNITY PROTEIN).


ensembl_gene_id: c0137
symbol: c0137
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 93 of 96 are 46.06 pct identical to residues 4 to 85 of 87 from SwissProt.40 : >sp|Q03708|IMM7_ECOLI COLICIN E7 IMMUNITY PROTEIN (IMME7) (MICROCIN E7 IMMUNITY PROTEIN).


ensembl_gene_id: c0140
symbol: pdhR
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex repressor; Transcriptional repressor for the pyruvate dehydrogenase complex genes aceEF and lpd.


ensembl_gene_id: c0142
symbol: aceE
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: c0145
symbol: lpdA
gene_biotype: protein_coding
description:
  Dihydrolipoamide dehydrogenase; Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.


ensembl_gene_id: c0146
symbol: yacH
gene_biotype: protein_coding
description:
  Hypothetical protein yacH; Escherichia coli K-12 ortholog: b0117; Escherichia coli O157:H7 ortholog: z0127.


ensembl_gene_id: c0147
symbol: acnB
gene_biotype: protein_coding
description:
  Aconitate hydratase 2; Escherichia coli K-12 ortholog: b0118; Escherichia coli O157:H7 ortholog: z0128.


ensembl_gene_id: c0148
symbol: yacL
gene_biotype: protein_coding
description:
  Hypothetical protein yacL; Escherichia coli K-12 ortholog: b0119; Escherichia coli O157:H7 ortholog: z0129; Belongs to the UPF0231 family.


ensembl_gene_id: c0149
symbol: speD
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily.


ensembl_gene_id: c0150
symbol: speE
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.


ensembl_gene_id: c0151
symbol: yacC
gene_biotype: protein_coding
description:
  Hypothetical protein yacC precursor; Escherichia coli K-12 ortholog: b0122; Escherichia coli O157:H7 ortholog: z0132.


ensembl_gene_id: c0152
symbol: yacK
gene_biotype: protein_coding
description:
  Blue copper oxidase cueO precursor; Copper efflux oxidase; Escherichia coli K-12 ortholog: b0123; Escherichia coli O157:H7 ortholog: z0133.


ensembl_gene_id: c0153
symbol: gcd
gene_biotype: protein_coding
description:
  Glucose dehydrogenase; Pyrroloquinoline-quinone; Escherichia coli K-12 ortholog: b0124; Escherichia coli O157:H7 ortholog: z0134.


ensembl_gene_id: c0154
symbol: hpt
gene_biotype: protein_coding
description:
  Hypoxanthine phosphoribosyltransferase; Acts preferentially on hypoxanthine; has very low activity towards guanine. Inactive towards xanthine (By similarity). Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: c0155
symbol: yadF
gene_biotype: protein_coding
description:
  Protein yadF; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: c0156
symbol: yadG
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein yadG; Escherichia coli K-12 ortholog: b0127; Escherichia coli O157:H7 ortholog: z0138.


ensembl_gene_id: c0157
symbol: yadH
gene_biotype: protein_coding
description:
  Hypothetical protein yadH; Escherichia coli K-12 ortholog: b0128; Escherichia coli O157:H7 ortholog: z0139.


ensembl_gene_id: c0158
symbol: yadI
gene_biotype: protein_coding
description:
  Putative PTS system IIA component yadI; Escherichia coli K-12 ortholog: b0129; Escherichia coli O157:H7 ortholog: z0140.


ensembl_gene_id: c0159
symbol: yadE
gene_biotype: protein_coding
description:
  Hypothetical protein yadE precursor; Escherichia coli K-12 ortholog: b0130; Escherichia coli O157:H7 ortholog: z0141.


ensembl_gene_id: c0160
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: c0162
symbol: yadD
gene_biotype: protein_coding
description:
  Hypothetical protein yadD; Escherichia coli K-12 ortholog: b0132; Escherichia coli O157:H7 ortholog: z0143.


ensembl_gene_id: c0163
symbol: c0163
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 4 to 63 of 65 are 68.75 pct identical to residues 235 to 298 of 298 from GenPept.129 : >gb|AAG54436.1|AE005189_9 (AE005189) orf, hypothetical protein [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c0164
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: c0165
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: c0168
symbol: yadL
gene_biotype: protein_coding
description:
  Hypothetical protein yadL precursor; Escherichia coli K-12 ortholog: b0137; Escherichia coli O157:H7 ortholog: z0148.


ensembl_gene_id: c0169
symbol: yadM
gene_biotype: protein_coding
description:
  Hypothetical protein yadM precursor; Escherichia coli K-12 ortholog: b0138; Escherichia coli O157:H7 ortholog: z0149.


ensembl_gene_id: c0170
symbol: htrE
gene_biotype: protein_coding
description:
  Outer membrane usher protein htrE precursor; EHeat shock protein; Escherichia coli K-12 ortholog: b0139; Escherichia coli O157:H7 ortholog: z0150.


ensembl_gene_id: c0171
symbol: ecpD
gene_biotype: protein_coding
description:
  Chaperone protein ecpD precursor; Escherichia coli K-12 ortholog: b0140; Escherichia coli O157:H7 ortholog: z0151.


ensembl_gene_id: c0172
symbol: yadN
gene_biotype: protein_coding
description:
  Hypothetical fimbrial-like protein yadN precursor; Escherichia coli K-12 ortholog: b0141; Escherichia coli O157:H7 ortholog: z0152.


ensembl_gene_id: c0175
symbol: folK
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Escherichia coli K-12 ortholog: b0142; Escherichia coli O157:H7 ortholog: z0153.


ensembl_gene_id: c0176
symbol: pcnB
gene_biotype: protein_coding
description:
  Poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: c0177
symbol: yadB
gene_biotype: protein_coding
description:
  Hypothetical protein yadB; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.


ensembl_gene_id: c0178
symbol: dksA
gene_biotype: protein_coding
description:
  DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.


ensembl_gene_id: c0179
symbol: sfsA
gene_biotype: protein_coding
description:
  Sugar fermentation stimulation protein A; Binds to DNA non-specifically. Could be a regulatory factor involved in maltose metabolism.


ensembl_gene_id: c0180
symbol: yadP
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: c0181
symbol: hrpB
gene_biotype: protein_coding
description:
  ATP-dependent helicase hrpB; Escherichia coli K-12 ortholog: b0148; Escherichia coli O157:H7 ortholog: z0159.


ensembl_gene_id: c0183
symbol: mrcB
gene_biotype: protein_coding
description:
  Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).


ensembl_gene_id: c0185
symbol: fhuA
gene_biotype: protein_coding
description:
  Ferrichrome-iron receptor precursor; Ferric hydroxamate uptake; Escherichia coli K-12 ortholog: b0150; Escherichia coli O157:H7 ortholog: z0161.


ensembl_gene_id: c0186
symbol: fhuC
gene_biotype: protein_coding
description:
  Ferrichrome transport ATP-binding protein fhuC; Escherichia coli K-12 ortholog: b0151; Escherichia coli O157:H7 ortholog: z0162.


ensembl_gene_id: c0187
symbol: fhuD
gene_biotype: protein_coding
description:
  Ferrichrome-binding periplasmic protein precursor; Escherichia coli K-12 ortholog: b0152; Escherichia coli O157:H7 ortholog: z0163.


ensembl_gene_id: c0188
symbol: fhuB
gene_biotype: protein_coding
description:
  Ferrichrome uptake protein fhuB; Escherichia coli K-12 ortholog: b0153; Escherichia coli O157:H7 ortholog: z0164; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: c0189
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde 2,1-aminomutase; Escherichia coli K-12 ortholog: b0154; Escherichia coli O157:H7 ortholog: z0165.


ensembl_gene_id: c0190
symbol: yadQ
gene_biotype: protein_coding
description:
  Voltage-gated ClC-type chloride channel eriC; Proton-coupled chloride transporter. Functions as antiport system and exchanges two chloride ions for 1 proton. Probably acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation, as part of the extreme acid resistance (XAR) response.


ensembl_gene_id: c0193
symbol: yadS
gene_biotype: protein_coding
description:
  Hypothetical protein yadS; Escherichia coli K-12 ortholog: b0157; Escherichia coli O157:H7 ortholog: z0168.


ensembl_gene_id: c0194
symbol: yadT
gene_biotype: protein_coding
description:
  Vitamin B12 transport protein btuF precursor; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Binds vitamin B12 and delivers it to the periplasmic surface of BtuC.


ensembl_gene_id: c0195
symbol: pfs
gene_biotype: protein_coding
description:
  MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Also cleaves 5'-deoxyadenosine, a toxic by-product of radical S-adenosylmethionine (SAM) enzymes, into 5-deoxyribose and adenine. Thus, is required for in vivo function of the radical SAM enzymes biotin synthase and lipoic acid synthase, that are inhibited by 5'-deoxyadenosine accumulation. Belongs to the PNP/UDP phosphorylas [...]


ensembl_gene_id: c0196
symbol: dgt
gene_biotype: protein_coding
description:
  Deoxyguanosinetriphosphate triphosphohydrolase; dGTPase preferentially hydrolyzes dGTP over the other canonical NTPs; Belongs to the dGTPase family. Type 1 subfamily.


ensembl_gene_id: c0197
symbol: htrA
gene_biotype: protein_coding
description:
  Protease do precursor; Escherichia coli K-12 ortholog: b0161; Escherichia coli O157:H7 ortholog: z0173; Belongs to the peptidase S1C family.


ensembl_gene_id: c0199
symbol: yaeG
gene_biotype: protein_coding
description:
  Sugar diacid regulator; Escherichia coli K-12 ortholog: b0162; Escherichia coli O157:H7 ortholog: z0174.


ensembl_gene_id: c0200
symbol: yaeH
gene_biotype: protein_coding
description:
  Hypothetical protein yaeH; Escherichia coli K-12 ortholog: b0163; Escherichia coli O157:H7 ortholog: z0175; Belongs to the UPF0325 family.


ensembl_gene_id: c0201
symbol: dapD
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Escherichia coli K-12 ortholog: b0166; Escherichia coli O157:H7 ortholog: z0176; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: c0202
symbol: glnD
gene_biotype: protein_coding
description:
  [Protein-PII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.


ensembl_gene_id: c0203
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: c0204
symbol: rpsB
gene_biotype: protein_coding
description:
  30S ribosomal protein S2; Escherichia coli K-12 ortholog: b0169; Escherichia coli O157:H7 ortholog: z0180.


ensembl_gene_id: c0206
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity).


ensembl_gene_id: c0208
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: c0211
symbol: yaeS
gene_biotype: protein_coding
description:
  Undecaprenyl pyrophosphate synthetase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.


ensembl_gene_id: c0212
symbol: cdsA
gene_biotype: protein_coding
description:
  Phosphatidate cytidylyltransferase; Escherichia coli K-12 ortholog: b0175; Escherichia coli O157:H7 ortholog: z0186; Belongs to the CDS family.


ensembl_gene_id: c0214
symbol: yaeT
gene_biotype: protein_coding
description:
  Unknown protein from 2D-page spots M62/M63/O3/O9/T35 precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.


ensembl_gene_id: c0215
symbol: hlpA
gene_biotype: protein_coding
description:
  Histone-like protein HLP-1 precursor; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm.


ensembl_gene_id: c0216
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O- (hydroxytetradecanoyl)glucosamine using 3-hydroxytetradecanoyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell; Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: c0217
symbol: fabZ
gene_biotype: protein_coding
description:
  (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs (By similarity).


ensembl_gene_id: c0218
symbol: lpxA
gene_biotype: protein_coding
description:
  Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: c0219
symbol: lpxB
gene_biotype: protein_coding
description:
  Lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: c0220
symbol: rnhB
gene_biotype: protein_coding
description:
  Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.


ensembl_gene_id: c0221
symbol: dnaE
gene_biotype: protein_coding
description:
  DNA polymerase III alpha subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity).


ensembl_gene_id: c0223
symbol: accA
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: c0224
symbol: ldcC
gene_biotype: protein_coding
description:
  Lysine decarboxylase, constitutive; Escherichia coli K-12 ortholog: b0186; Escherichia coli O157:H7 ortholog: z0198.


ensembl_gene_id: c0225
symbol: yaeR
gene_biotype: protein_coding
description:
  Hypothetical protein yaeR; Escherichia coli K-12 ortholog: b0187; Escherichia coli O157:H7 ortholog: z0199.


ensembl_gene_id: c0226
symbol: mesJ
gene_biotype: protein_coding
description:
  Putative cell cycle protein mesJ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: c0228
symbol: yaeP
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 66 of 66 are 98.48 pct identical to residues 1 to 66 of 66 from SwissProt.40 : >sp|P52099|YAEP_ECOLI Hypothetical protein yaeP; Belongs to the UPF0253 family.


ensembl_gene_id: c0229
symbol: yaeQ
gene_biotype: protein_coding
description:
  Hypothetical protein yaeQ; Escherichia coli K-12 ortholog: b0190; Escherichia coli O157:H7 ortholog: z0202.


ensembl_gene_id: c0230
symbol: yaeJ
gene_biotype: protein_coding
description:
  Hypothetical protein yaeJ; Escherichia coli K-12 ortholog: b0191; Escherichia coli O157:H7 ortholog: z0203.


ensembl_gene_id: c0231
symbol: cutF
gene_biotype: protein_coding
description:
  Copper homeostasis protein cutF precursor; Lipoprotein nlpE; Escherichia coli K-12 ortholog: b0192; Escherichia coli O157:H7 ortholog: z0204.


ensembl_gene_id: c0233
symbol: c0233
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 4 to 176 of 176 are 99.42 pct identical to residues 1 to 173 of 173 from SwissProt.40 : >sp|Q47309|YI9A_ECOLI INSERTION ELEMENT IS1397 HYPOTHETICAL 20.1 KD PROTEIN (ORFA).


ensembl_gene_id: c0234
symbol: yaeF
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yaeF precursor; Escherichia coli K-12 ortholog: b0193; Escherichia coli O157:H7 ortholog: z0205.


ensembl_gene_id: c0235
symbol: proS
gene_biotype: protein_coding
description:
  Prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: c0236
symbol: yaeB
gene_biotype: protein_coding
description:
  Hypothetical protein yaeB; Escherichia coli K-12 ortholog: b0195; Escherichia coli O157:H7 ortholog: z0207.


ensembl_gene_id: c0237
symbol: rcsF
gene_biotype: protein_coding
description:
  Protein rcsF; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.


ensembl_gene_id: c0238
symbol: yaeC
gene_biotype: protein_coding
description:
  D-methionine-binding lipoprotein metQ precursor; Escherichia coli K-12 ortholog: b0197; Escherichia coli O157:H7 ortholog: z0209; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: c0239
symbol: yaeE
gene_biotype: protein_coding
description:
  D-methionine transport system permease protein metI; Escherichia coli K-12 ortholog: b0198; Escherichia coli O157:H7 ortholog: z0210.


ensembl_gene_id: c0240
symbol: abc
gene_biotype: protein_coding
description:
  D-methionine transport ATP-binding protein metN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: c0241
symbol: yaeD
gene_biotype: protein_coding
description:
  Hypothetical protein yaeD; Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate by removing the phosphate group at the C-7 position; Belongs to the GmhB family.


ensembl_gene_id: c0244
symbol: yafB
gene_biotype: protein_coding
description:
  2,5-diketo-D-gluconic acid reductase B; Escherichia coli K-12 ortholog: b0207; Escherichia coli O157:H7 ortholog: z0229.


ensembl_gene_id: c0245
symbol: yafC
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yafC; Escherichia coli K-12 ortholog: b0208; Escherichia coli O157:H7 ortholog: z0230; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c0246
symbol: yafD
gene_biotype: protein_coding
description:
  Hypothetical protein yafD; Escherichia coli K-12 ortholog: b0209; Escherichia coli O157:H7 ortholog: z0232.


ensembl_gene_id: c0247
symbol: yafE
gene_biotype: protein_coding
description:
  Hypothetical protein yafE; Escherichia coli K-12 ortholog: b0210; Escherichia coli O157:H7 ortholog: z0233.


ensembl_gene_id: c0248
symbol: dniR
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase D precursor; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity); Belongs to the transglycosylase Slt family.


ensembl_gene_id: c0249
symbol: gloB
gene_biotype: protein_coding
description:
  Probable hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: c0250
symbol: yafS
gene_biotype: protein_coding
description:
  Hypothetical protein yafS; Escherichia coli K-12 ortholog: b0213; Escherichia coli O157:H7 ortholog: z0237.


ensembl_gene_id: c0252
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon chain; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: c0254
symbol: c0254
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 75 of 81 are 53.33 pct identical to residues 205 to 279 of 280 from GenPept.129 : >gb|AAL57572.1|AF453442_1 (AF453442) unknown [Escherichia coli].


ensembl_gene_id: c0255
symbol: c0255
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 148 of 148 are 70.94 pct identical to residues 1 to 148 of 174 from GenPept.129 : >gb|AAL67385.1|AF447814_53 (AF447814) L0010-like protein [Escherichia coli].


ensembl_gene_id: c0256
symbol: c0256
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 7 to 69 of 73 are 66.66 pct identical to residues 5 to 67 of 141 from GenPept.129 : >gb|AAG55763.1|AE005312_9 (AE005312) unknown in putative ISEc8 [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c0258
symbol: c0258
gene_biotype: protein_coding
description:
  Unknown in ISEc8; Residues 1 to 215 of 215 are 100.00 pct identical to residues 10 to 224 of 224 from GenPept.129 : >gb|AAL67334.1|AF447814_2 (AF447814) L0015-like protein [Escherichia coli].


ensembl_gene_id: c0259
symbol: c0259
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 42 to 316 of 316 are 100.00 pct identical to residues 1 to 275 of 275 from GenPept.129 : >gb|AAL67335.1|AF447814_3 (AF447814) L0015-like protein [Escherichia coli].


ensembl_gene_id: c0261
symbol: c0261
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 8 to 372 of 377 are 47.26 pct identical to residues 39 to 390 of 390 from SwissProt.40 : >sp|P55626|Y4QE_RHISN PUTATIVE TRANSPOSASE Y4QE.


ensembl_gene_id: c0262
symbol: c0262
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 61 of 61 are 100.00 pct identical to residues 477 to 537 of 537 from GenPept.129 : >gb|AAG55715.1|AE005309_5 (AE005309) unknown in ISEc8 [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c0264
symbol: c0264
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 84 of 84 are 97.61 pct identical to residues 260 to 343 of 343 from GenPept.129 : >emb|CAA29389.1| (X05955) ORF (343 AA) [Shigella sonnei].


ensembl_gene_id: c0265
symbol: c0265
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 115 of 115 are 100.00 pct identical to residues 1 to 115 of 115 from GenPept.129 : >gb|AAL67339.1|AF447814_7 (AF447814) L0008-like protein [Escherichia coli].


ensembl_gene_id: c0268
symbol: c0268
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 244 of 251 are 41.60 pct identical to residues 1 to 250 of 298 from SwissProt.40 : >sp|P55500|Y4IQ_RHISN PUTATIVE INSERTION SEQUENCE ATP-BINDING PROTEIN Y4IQ/Y4ND/Y4SD.


ensembl_gene_id: c0269
symbol: c0269
gene_biotype: protein_coding
description:
  Hypothetical protein yeeV; Escherichia coli K-12 ortholog: b2005; Escherichia coli O157:H7 ortholog: z5091.


ensembl_gene_id: c0270
symbol: c0270
gene_biotype: protein_coding
description:
  Hypothetical protein yeeU; Escherichia coli K-12 ortholog: b2004; Escherichia coli O157:H7 ortholog: z1658.


ensembl_gene_id: c0271
symbol: c0271
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 178 to 214 of 214 are 72.97 pct identical to residues 1 to 37 of 37 from GenPept.129 : >gb|AAL57577.1|AF453442_6 (AF453442) unknown [Escherichia coli].


ensembl_gene_id: c0272
symbol: c0272
gene_biotype: protein_coding
description:
  Hypothetical protein yeeT; Escherichia coli K-12 ortholog: b2003; Escherichia coli O157:H7 ortholog: z1218.


ensembl_gene_id: c0273
symbol: c0273
gene_biotype: protein_coding
description:
  Putative radC-like protein yeeS; Escherichia coli K-12 ortholog: b2002; Escherichia coli O157:H7 ortholog: z1217; Belongs to the UPF0758 family.


ensembl_gene_id: c0274
symbol: c0274
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 319 of 319 are 100.00 pct identical to residues 1 to 319 of 319 from GenPept.129 : >gb|AAL67347.1|AF447814_15 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0275
symbol: c0275
gene_biotype: protein_coding
description:
  Hypothetical protein yafX; Escherichia coli K-12 ortholog: b0248; Escherichia coli O157:H7 ortholog: z1656.


ensembl_gene_id: c0276
symbol: c0276
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 45 of 74 are 97.77 pct identical to residues 8 to 52 of 271 from GenPept.129 : >gb|AAK00478.1| (AF200692) unknown [Shigella flexneri 2a].


ensembl_gene_id: c0277
symbol: c0277
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 90 to 282 of 282 are 100.00 pct identical to residues 1 to 193 of 193 from GenPept.129 : >gb|AAL67348.1|AF447814_16 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0278
symbol: c0278
gene_biotype: protein_coding
description:
  Hypothetical protein yafZ; Escherichia coli K-12 ortholog: b0252; Escherichia coli O157:H7 ortholog: z1655.


ensembl_gene_id: c0280
symbol: c0280
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 12 to 161 of 161 are 100.00 pct identical to residues 1 to 150 of 150 from GenPept.129 : >gb|AAL67352.1|AF447814_20 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0281
symbol: c0281
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 82 of 82 are 100.00 pct identical to residues 1 to 82 of 82 from GenPept.129 : >gb|AAL67353.1|AF447814_21 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0282
symbol: c0282
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 4 to 212 of 212 are 100.00 pct identical to residues 1 to 209 of 209 from GenPept.129 : >gb|AAL67354.1|AF447814_22 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0283
symbol: c0283
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 168 of 168 are 100.00 pct identical to residues 1 to 168 of 168 from GenPept.129 : >gb|AAL67355.1|AF447814_23 (AF447814) intergenic-region protein [Escherichia coli].


ensembl_gene_id: c0287
symbol: c0287
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 108 of 115 are 97.22 pct identical to residues 2 to 109 of 795 from GenPept.129 : >gb|AAG55767.1|AE005313_2 (AE005313) unknown [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c0288
symbol: c0288
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 41 of 41 are 97.56 pct identical to residues 63 to 103 of 103 from GenPept.129 : >gb|AAL67360.1|AF447814_28 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0289
symbol: c0289
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 22 to 86 of 118 are 98.46 pct identical to residues 1 to 65 of 290 from GenPept.129 : >gb|AAL99256.1| (AY082443) unknown [Escherichia coli].


ensembl_gene_id: c0290
symbol: c0290
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 32 to 289 of 367 are 93.82 pct identical to residues 5 to 263 of 268 from GenPept.129 : >gb|AAL67361.1|AF447814_29 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0291
symbol: c0291
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 202 of 202 are 100.00 pct identical to residues 1 to 200 of 200 from GenPept.129 : >gb|AAL67363.1|AF447814_31 (AF447814) putative recombinase [Escherichia coli].


ensembl_gene_id: c0292
symbol: c0292
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 143 of 245 are 98.60 pct identical to residues 1 to 143 of 153 from GenPept.129 : >gb|AAL67364.1|AF447814_32 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0293
symbol: c0293
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 269 of 269 are 100.00 pct identical to residues 1 to 269 of 269 from GenPept.129 : >gb|AAL67365.1|AF447814_33 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0294
symbol: c0294
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 530 of 721 are 100.00 pct identical to residues 1 to 530 of 536 from GenPept.129 : >gb|AAL67366.1|AF447814_34 (AF447814) truncated ferric siderophore receptor [Escherichia coli].


ensembl_gene_id: c0295
symbol: c0295
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 330 of 330 are 99.39 pct identical to residues 1 to 332 of 332 from GenPept.129 : >gb|AAL67368.1|AF447814_36 (AF447814) iron-chelating periplasmic-binding protein [Escherichia coli].


ensembl_gene_id: c0296
symbol: c0296
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 352 of 352 are 100.00 pct identical to residues 1 to 352 of 352 from GenPept.129 : >gb|AAL67369.1|AF447814_37 (AF447814) putative permease [Escherichia coli]; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: c0297
symbol: c0297
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 255 of 255 are 100.00 pct identical to residues 1 to 255 of 255 from GenPept.129 : >gb|AAL67370.1|AF447814_38 (AF447814) ferric-enterobactin-transport protein [Escherichia coli].


ensembl_gene_id: c0305
symbol: c0305
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 202 of 202 are 92.07 pct identical to residues 1 to 202 of 202 from GenPept.129 : >gb|AAL08467.1| (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c0307
symbol: c0307
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 9 to 164 of 263 are 96.15 pct identical to residues 1 to 156 of 156 from GenPept.129 : >gb|AAK00470.1| (AF200692) unknown [Shigella flexneri 2a].


ensembl_gene_id: c0308
symbol: c0308
gene_biotype: protein_coding
description:
  Haemolysin expression modulating protein; Escherichia coli K-12 ortholog: b0460; Escherichia coli O157:H7 ortholog: z0573.


ensembl_gene_id: c0310
symbol: c0310
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 129 of 129 are 88.97 pct identical to residues 1 to 127 of 127 from GenPept.129 : >gb|AAK00467.1| (AF200692) unknown [Shigella flexneri 2a].


ensembl_gene_id: c0311
symbol: c0311
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 15 to 119 of 141 are 36.36 pct identical to residues 44 to 153 of 173 from GenPept.129 : >gb|AAL08463.1|AF326777_38 (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c0312
symbol: c0312
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 30 to 80 of 80 are 76.47 pct identical to residues 48 to 98 of 98 from GenPept.129 : >gb|AAL08431.1|AF326777_6 (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c0315
symbol: c0315
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 8 to 71 of 71 are 93.75 pct identical to residues 1 to 64 of 64 from GenPept.129 : >dbj|BAB34790.1| (AP002554) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c0316
symbol: c0316
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 68 of 96 are 70.58 pct identical to residues 69 to 136 of 148 from GenPept.129 : >gb|AAL67420.1|AF447814_88 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c0318
symbol: c0318
gene_biotype: protein_coding
description:
  Putative sugar-phosphate isomerase; Residues 1 to 210 of 212 are 65.87 pct identical to residues 1 to 211 of 212 from GenPept.129 : >gb|AAL20848.1| (AE008786) putative ribose 5-phosphate isomerase [Salmonella typhimurium LT2].


ensembl_gene_id: c0319
symbol: c0319
gene_biotype: protein_coding
description:
  Putative oligogalacturonide lyase; Residues 1 to 386 of 390 are 65.02 pct identical to residues 1 to 386 of 388 from SwissProt.40 : >sp|Q59418|OGL_ERWCA OLIGOGALACTURONIDE LYASE.


ensembl_gene_id: c0321
symbol: c0321
gene_biotype: protein_coding
description:
  Gluconate 5-dehydrogenase; Escherichia coli K-12 ortholog: b4266; Escherichia coli O157:H7 ortholog: z4085.


ensembl_gene_id: c0322
symbol: c0322
gene_biotype: protein_coding
description:
  Putative oligogalacturonide transporter; Residues 16 to 496 of 504 are 56.93 pct identical to residues 13 to 495 of 508 from GenPept.129 : >emb|CAC44457.1| (AJ305143) oligogalacturonide transporter [Pectobacterium chrysanthemi].


ensembl_gene_id: c0323
symbol: c0323
gene_biotype: protein_coding
description:
  Putative exopolygalacturonate lyase; Residues 21 to 729 of 768 are 40.62 pct identical to residues 8 to 686 of 732 from GenPept.129 : >gb|AAL51034.1|AF454849_1 (AF454849) pectate lyase [Klebsiella oxytoca].


ensembl_gene_id: c0326
symbol: c0326
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 142 of 142 are 86.71 pct identical to residues 83 to 225 of 228 from GenPept.129 : >emb|CAC43418.1| (X16664) hypothetical protein [Escherichia coli].


ensembl_gene_id: c0330
symbol: c0330
gene_biotype: protein_coding
description:
  Putative deoxyribose operon repressor; Residues 2 to 261 of 261 are 83.58 pct identical to residues 1 to 261 of 261 from GenPept.129 : >gb|AAL22652.1| (AE008876) putative regulatory protein, deoR family [Salmonella typhimurium LT2].


ensembl_gene_id: c0331
symbol: rbsK-2
gene_biotype: protein_coding
description:
  Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: c0332
symbol: c0332
gene_biotype: protein_coding
description:
  Putative L-fucose permease; Residues 1 to 438 of 438 are 96.11 pct identical to residues 1 to 438 of 438 from GenPept.129 : >gb|AAL22650.1| (AE008876) putative L-fucose permease [Salmonella typhimurium LT2].


ensembl_gene_id: c0333
symbol: c0333
gene_biotype: protein_coding
description:
  Putative cytoplasmic protein; Residues 1 to 336 of 337 are 83.03 pct identical to residues 1 to 336 of 337 from GenPept.129 : >gb|AAL22649.1| (AE008876) putative cytoplasmic protein [Salmonella typhimurium LT2].


ensembl_gene_id: c0334
symbol: c0334
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Residues 1 to 418 of 418 are 99.76 pct identical to residues 1 to 418 of 418 from GenPept.129 : >emb|CAC39291.1| (AJ278144) hypothetical protein [Escherichia coli].


ensembl_gene_id: c0335
symbol: c0335
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 95 of 95 are 96.84 pct identical to residues 1 to 95 of 95 from GenPept.129 : >gb|AAK27336.1| (AF286670) unknown [Escherichia coli].


ensembl_gene_id: c0336
symbol: c0336
gene_biotype: protein_coding
description:
  PTS system, mannitol (Cryptic)-specific IIA component; EIIA-(C)MTL; Escherichia coli K-12 ortholog: b2934; Escherichia coli O157:H7 ortholog: z4278.


ensembl_gene_id: c0337
symbol: c0337
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 12 to 307 of 343 are 33.11 pct identical to residues 5 to 298 of 313 from MG1655 : b3438.


ensembl_gene_id: c0345
symbol: c0345
gene_biotype: protein_coding
description:
  Putative member of ShlA/HecA/FhaA exoprotein family; Residues 9 to 3039 of 3216 are 32.79 pct identical to residues 52 to 3078 of 3295 from GenPept.129 : >emb|CAC89456.1| (AJ414143) putative adhesin [Yersinia pestis].


ensembl_gene_id: c0350
symbol: pic
gene_biotype: protein_coding
description:
  Pic serine protease precursor; Involved in virulence of uropathogenic E.coli although it is not known how it contributes to it. Has no mucinase activity.


ensembl_gene_id: c0355
symbol: c0355
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 98 of 98 are 83.50 pct identical to residues 166 to 262 of 539 from GenPept.129 : >gb|AAL57569.1|AF453441_53 (AF453441) putative transposase [Escherichia coli].


ensembl_gene_id: c0357
symbol: c0357
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 127 of 127 are 89.31 pct identical to residues 409 to 539 of 539 from GenPept.129 : >gb|AAL57569.1|AF453441_53 (AF453441) putative transposase [Escherichia coli].


ensembl_gene_id: c0359
symbol: c0359
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 38 of 40 are 65.78 pct identical to residues 1 to 38 of 173 from GenPept.129 : >gb|AAK29065.1|AF345899_1 (AF345899) OrfA [Klebsiella pneumoniae].


ensembl_gene_id: c0360
symbol: c0360
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 93 to 374 of 415 are 22.55 pct identical to residues 108 to 400 of 445 from GenPept.129 : >gb|AAF94774.1| (AE004240) agglutination protein [Vibrio cholerae].


ensembl_gene_id: c0363
symbol: c0363
gene_biotype: protein_coding
description:
  Putative RTX family exoprotein A gene; Residues 83 to 1160 of 1610 are 23.56 pct identical to residues 3030 to 4053 of 4106 from GenPept.129 : >emb|CAD18331.1| (AL646083) PUTATIVE HEMAGGLUTININ/HEMOLYSIN-RELATED PROTEIN [Ralstonia solanacearum].


ensembl_gene_id: c0364
symbol: c0364
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 156 of 160 are 33.12 pct identical to residues 1 to 157 of 157 from GenPept.129 : >gb|AAL31494.1|AF399847_3 (AF399847) ORF-156F [Escherichia coli].


ensembl_gene_id: c0367
symbol: c0367
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 14 to 152 of 158 are 29.11 pct identical to residues 6 to 160 of 160 from GenPept.129 : >emb|CAA79750.1| (Z21626) putative transposase [Geobacillus stearothermophilus].


ensembl_gene_id: c0369
symbol: yafV
gene_biotype: protein_coding
description:
  Hypothetical protein yafV; Escherichia coli K-12 ortholog: b0219; Escherichia coli O157:H7 ortholog: z0276.


ensembl_gene_id: c0370
symbol: ykfE
gene_biotype: protein_coding
description:
  Inhibitor of vertebrate lysozyme precursor; Escherichia coli K-12 ortholog: b0220; Escherichia coli O157:H7 ortholog: z0277.


ensembl_gene_id: c0371
symbol: yafH
gene_biotype: protein_coding
description:
  Acyl-coenzyme A dehydrogenase; Escherichia coli K-12 ortholog: b0221; Escherichia coli O157:H7 ortholog: z0278.


ensembl_gene_id: c0372
symbol: gmhA
gene_biotype: protein_coding
description:
  Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.


ensembl_gene_id: c0373
symbol: yafJ
gene_biotype: protein_coding
description:
  Hypothetical protein yafJ; Escherichia coli K-12 ortholog: b0223; Escherichia coli O157:H7 ortholog: z0281.


ensembl_gene_id: c0374
symbol: yafK
gene_biotype: protein_coding
description:
  Hypothetical protein yafK precursor; Escherichia coli K-12 ortholog: b0224; Escherichia coli O157:H7 ortholog: z0282.


ensembl_gene_id: c0376
symbol: yafL
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yafL precursor; Escherichia coli K-12 ortholog: b0227; Escherichia coli O157:H7 ortholog: z0287.


ensembl_gene_id: c0379
symbol: dinP
gene_biotype: protein_coding
description:
  DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII (By similarity).


ensembl_gene_id: c0380
symbol: yafP
gene_biotype: protein_coding
description:
  Hypothetical acetyltransferase yafP; Escherichia coli K-12 ortholog: b0234; Escherichia coli O157:H7 ortholog: z0295.


ensembl_gene_id: c0381
symbol: c0381
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 381 of 383 are 74.53 pct identical to residues 1 to 377 of 379 from GenPept.129 : >emb|CAD08784.1| (AL627266) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0382
symbol: prfH
gene_biotype: protein_coding
description:
  Peptide chain release factor homolog; RF-H; Escherichia coli K-12 ortholog: b0236; Escherichia coli O157:H7 ortholog: z0297.


ensembl_gene_id: c0383
symbol: pepD
gene_biotype: protein_coding
description:
  Aminoacyl-histidine dipeptidase; Escherichia coli K-12 ortholog: b0237; Escherichia coli O157:H7 ortholog: z0298.


ensembl_gene_id: c0384
symbol: gpt
gene_biotype: protein_coding
description:
  Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.


ensembl_gene_id: c0387
symbol: crl
gene_biotype: protein_coding
description:
  Curlin genes transcriptional activatory protein; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.


ensembl_gene_id: c0388
symbol: phoE
gene_biotype: protein_coding
description:
  Outer membrane pore protein E precursor; Escherichia coli K-12 ortholog: b0241; Escherichia coli O157:H7 ortholog: z0302; Belongs to the Gram-negative porin family.


ensembl_gene_id: c0389
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: c0390
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: c0391
symbol: c0391
gene_biotype: protein_coding
description:
  CP4-like integrase; Residues 1 to 111 of 112 are 63.06 pct identical to residues 1 to 111 of 404 from GenPept.129 : >emb|CAC89731.1| (AJ414145) integrase [Yersinia pestis].


ensembl_gene_id: c0392
symbol: c0392
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 172 of 174 are 46.91 pct identical to residues 1 to 162 of 166 from SwissProt.40 : >sp|P42192|PRSX_ECOLI PRSX PROTEIN.


ensembl_gene_id: c0393
symbol: c0393
gene_biotype: protein_coding
description:
  Haemoglobin protease; Residues 1 to 1376 of 1376 are 79.04 pct identical to residues 1 to 1377 of 1377 from GenPept.129 : >emb|CAA11507.1| (AJ223631) haemoglobin protease [Escherichia coli].


ensembl_gene_id: c0396
symbol: c0396
gene_biotype: protein_coding
description:
  Insertion element IS1 1/2/3/5/6 protein insA; IS1a/IS1b/IS1c/IS1d; Escherichia coli K-12 ortholog: b3444.


ensembl_gene_id: c0397
symbol: c0397
gene_biotype: protein_coding
description:
  InsB protein; Residues 1 to 58 of 58 are 87.93 pct identical to residues 74 to 131 of 131 from GenPept.129 : >gb|AAF28142.1|AF153317_40 (AF153317) InsB [Shigella dysenteriae].


ensembl_gene_id: c0399
symbol: yagU
gene_biotype: protein_coding
description:
  Hypothetical protein yagU; Escherichia coli K-12 ortholog: b0287; Escherichia coli O157:H7 ortholog: z0353.


ensembl_gene_id: c0400
symbol: yagV
gene_biotype: protein_coding
description:
  Hypothetical protein yagV precursor; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity); Belongs to the EcpB/EcpE family.


ensembl_gene_id: c0401
symbol: yagW
gene_biotype: protein_coding
description:
  Hypothetical protein yagW; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition. Tip pilus adhesin, which is required for assembly of EcpA into fibers (By similarity); Belongs to the EcpD/MatE family.


ensembl_gene_id: c0402
symbol: yagX
gene_biotype: protein_coding
description:
  Hypothetical protein yagX precursor; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity); Belongs to the EcpC/MatD family.


ensembl_gene_id: c0403
symbol: yagY
gene_biotype: protein_coding
description:
  Hypothetical protein yagY precursor; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity); Belongs to the EcpB/EcpE family.


ensembl_gene_id: c0404
symbol: matB
gene_biotype: protein_coding
description:
  Hypothetical protein yagZ precursor; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition. Major subunit of the fimbria. Belongs to the EcpA/MatB fimbrillin family.


ensembl_gene_id: c0405
symbol: matA
gene_biotype: protein_coding
description:
  Hypothetical protein ykgK; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition. Positively regulates the expression of the ecp operon (By similarity).


ensembl_gene_id: c0406
symbol: rpmJ2
gene_biotype: protein_coding
description:
  Putative 50S ribosomal protein L36; Residues 2 to 47 of 47 are 56.52 pct identical to residues 1 to 46 of 48 from SwissProt.40 : >sp|P28528|RK36_GUITH CHLOROPLAST 50S RIBOSOMAL PROTEIN L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: c0407
symbol: ykgM
gene_biotype: protein_coding
description:
  50S ribosomal protein L31 type B-1; Escherichia coli K-12 ortholog: b0296; Escherichia coli O157:H7 ortholog: z0364.


ensembl_gene_id: c0408
symbol: c0408
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 47 of 47 are 91.48 pct identical to residues 334 to 380 of 380 from GenPept.129 : >gb|AAG54626.1|AE005207_1 (AE005207) putative oxidoreductase [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c0410
symbol: c0410
gene_biotype: protein_coding
description:
  Hypothetical protein ycjY; Escherichia coli K-12 ortholog: b1327; Escherichia coli O157:H7 ortholog: z0370.


ensembl_gene_id: c0411
symbol: c0411
gene_biotype: protein_coding
description:
  Putative LysR-like transcriptional regulator; Escherichia coli O157:H7 ortholog: z0371; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c0412
symbol: c0412
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ycjZ; Escherichia coli K-12 ortholog: b1328; Escherichia coli O157:H7 ortholog: z2439; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c0413
symbol: c0413
gene_biotype: protein_coding
description:
  Putative aldo/keto reductase; Residues 6 to 290 of 329 are 50.51 pct identical to residues 13 to 301 of 307 from SwissProt.40 : >sp|P40691|A115_TOBAC AUXIN-INDUCED PROTEIN PCNT115.


ensembl_gene_id: c0414
symbol: c0414
gene_biotype: protein_coding
description:
  2,5-diketo-D-gluconic acid reductase A; Escherichia coli K-12 ortholog: b3012; Escherichia coli O157:H7 ortholog: z0374.


ensembl_gene_id: c0416
symbol: ykgA
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ykgA; Escherichia coli K-12 ortholog: b0300; Escherichia coli O157:H7 ortholog: z0376.


ensembl_gene_id: c0417
symbol: c0417
gene_biotype: protein_coding
description:
  2,5-diketo-D-gluconic acid reductase A; Escherichia coli K-12 ortholog: b3012; Escherichia coli O157:H7 ortholog: z0377.


ensembl_gene_id: c0418
symbol: ykgB
gene_biotype: protein_coding
description:
  Hypothetical protein ykgB; Escherichia coli K-12 ortholog: b0301; Escherichia coli O157:H7 ortholog: z0378.


ensembl_gene_id: c0419
symbol: ykgI
gene_biotype: protein_coding
description:
  Hypothetical protein ykgI precursor; Escherichia coli K-12 ortholog: b0303; Escherichia coli O157:H7 ortholog: z0380.


ensembl_gene_id: c0420
symbol: ykgC
gene_biotype: protein_coding
description:
  Probable pyridine nucleotide-disulfide oxidoreductase ykgC; Escherichia coli K-12 ortholog: b0304; Escherichia coli O157:H7 ortholog: z0381.


ensembl_gene_id: c0421
symbol: ykgD
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ykgD; Escherichia coli K-12 ortholog: b0305; Escherichia coli O157:H7 ortholog: z0382.


ensembl_gene_id: c0422
symbol: ykgE
gene_biotype: protein_coding
description:
  Hypothetical protein ykgE; Escherichia coli K-12 ortholog: b0306; Escherichia coli O157:H7 ortholog: z0384.


ensembl_gene_id: c0423
symbol: ykgF
gene_biotype: protein_coding
description:
  Putative electron transport protein ykgF; Escherichia coli K-12 ortholog: b0307; Escherichia coli O157:H7 ortholog: z0385.


ensembl_gene_id: c0424
symbol: ykgG
gene_biotype: protein_coding
description:
  Hypothetical protein ykgG; Escherichia coli K-12 ortholog: b0308; Escherichia coli O157:H7 ortholog: z0386.


ensembl_gene_id: c0425
symbol: ykgH
gene_biotype: protein_coding
description:
  Hypothetical protein ykgH; Escherichia coli K-12 ortholog: b0310; Escherichia coli O157:H7 ortholog: z0388.


ensembl_gene_id: c0426
symbol: c0426
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 7 to 372 of 776 are 88.31 pct identical to residues 1 to 366 of 369 from GenPept.129 : >gb|AAG54646.1|AE005209_2 (AE005209) Z0390 gene product [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c0431
symbol: betA
gene_biotype: protein_coding
description:
  Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. Belongs to the GMC oxidoreductase family.


ensembl_gene_id: c0432
symbol: betB
gene_biotype: protein_coding
description:
  Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.


ensembl_gene_id: c0433
symbol: betI
gene_biotype: protein_coding
description:
  Regulatory protein betI; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity).


ensembl_gene_id: c0434
symbol: betT
gene_biotype: protein_coding
description:
  High-affinity choline transport protein; Escherichia coli K-12 ortholog: b0314; Escherichia coli O157:H7 ortholog: z0401; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: c0435
symbol: c0435
gene_biotype: protein_coding
description:
  Hypothetical protein yahA; Escherichia coli K-12 ortholog: b0315; Escherichia coli O157:H7 ortholog: z0403.


ensembl_gene_id: c0436
symbol: yahB
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yahB; Escherichia coli K-12 ortholog: b0316; Escherichia coli O157:H7 ortholog: z0405; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c0437
symbol: yahC
gene_biotype: protein_coding
description:
  Hypothetical protein yahC; Escherichia coli K-12 ortholog: b0317; Escherichia coli O157:H7 ortholog: z0406.


ensembl_gene_id: c0439
symbol: yahD
gene_biotype: protein_coding
description:
  Hypothetical ANK-repeats protein yahD; Escherichia coli K-12 ortholog: b0318; Escherichia coli O157:H7 ortholog: z0407.


ensembl_gene_id: c0440
symbol: yahE
gene_biotype: protein_coding
description:
  Hypothetical protein yahE; Escherichia coli K-12 ortholog: b0319; Escherichia coli O157:H7 ortholog: z0408.


ensembl_gene_id: c0441
symbol: c0441
gene_biotype: protein_coding
description:
  Hypothetical protein yahF; Escherichia coli K-12 ortholog: b0320; Escherichia coli O157:H7 ortholog: z0409.


ensembl_gene_id: c0444
symbol: c0444
gene_biotype: protein_coding
description:
  Carbamate kinase-like protein yahI; Escherichia coli K-12 ortholog: b0323; Escherichia coli O157:H7 ortholog: z0412; Belongs to the carbamate kinase family.


ensembl_gene_id: c0445
symbol: yahJ
gene_biotype: protein_coding
description:
  Hypothetical protein yahJ; Escherichia coli K-12 ortholog: b0324; Escherichia coli O157:H7 ortholog: z0413.


ensembl_gene_id: c0447
symbol: yahK
gene_biotype: protein_coding
description:
  Hypothetical zinc-type alcohol dehydrogenase-like protein yahK; Escherichia coli K-12 ortholog: b0325; Escherichia coli O157:H7 ortholog: z0420.


ensembl_gene_id: c0448
symbol: yahN
gene_biotype: protein_coding
description:
  Hypothetical protein yahN; Escherichia coli K-12 ortholog: b0328; Escherichia coli O157:H7 ortholog: z0424.


ensembl_gene_id: c0449
symbol: yahO
gene_biotype: protein_coding
description:
  Hypothetical protein yahO precursor; Escherichia coli K-12 ortholog: b0329; Escherichia coli O157:H7 ortholog: z0425.


ensembl_gene_id: c0450
symbol: prpR
gene_biotype: protein_coding
description:
  Propionate catabolism operon Regulatory protein; Escherichia coli K-12 ortholog: b0330; Escherichia coli O157:H7 ortholog: z0426.


ensembl_gene_id: c0451
symbol: prpB
gene_biotype: protein_coding
description:
  Probable methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.


ensembl_gene_id: c0452
symbol: prpC
gene_biotype: protein_coding
description:
  2-methylcitrate synthase; Escherichia coli K-12 ortholog: b0333; Escherichia coli O157:H7 ortholog: z0428; Belongs to the citrate synthase family.


ensembl_gene_id: c0453
symbol: prpD
gene_biotype: protein_coding
description:
  2-methylcitrate dehydratase; Escherichia coli K-12 ortholog: b0334; Escherichia coli O157:H7 ortholog: z0429.


ensembl_gene_id: c0454
symbol: prpE
gene_biotype: protein_coding
description:
  Propionate--CoA ligase; Escherichia coli K-12 ortholog: b0335; Escherichia coli O157:H7 ortholog: z0430.


ensembl_gene_id: c0455
symbol: codB
gene_biotype: protein_coding
description:
  Cytosine permease; Required for cytosine transport into the cell; Belongs to the purine-cytosine permease (2.A.39) family.


ensembl_gene_id: c0456
symbol: codA
gene_biotype: protein_coding
description:
  Cytosine deaminase; Escherichia coli K-12 ortholog: b0337; Escherichia coli O157:H7 ortholog: z0433.


ensembl_gene_id: c0457
symbol: lacA
gene_biotype: protein_coding
description:
  Galactoside O-acetyltransferase; Escherichia coli K-12 ortholog: b0342; Escherichia coli O157:H7 ortholog: z0438.


ensembl_gene_id: c0458
symbol: lacY
gene_biotype: protein_coding
description:
  Lactose-proton symport; Escherichia coli K-12 ortholog: b0343; Escherichia coli O157:H7 ortholog: z0439.


ensembl_gene_id: c0459
symbol: lacZ
gene_biotype: protein_coding
description:
  Beta-galactosidase; Escherichia coli K-12 ortholog: b0344; Escherichia coli O157:H7 ortholog: z0440; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: c0460
symbol: c0460
gene_biotype: protein_coding
description:
  LacI protein; Residues 12 to 88 of 88 are 88.31 pct identical to residues 284 to 360 of 360 from GenPept.129 : >gb|AAL59004.1| (AY070365) Lac repressor [Expression vector pFHC2102].


ensembl_gene_id: c0462
symbol: yaiL
gene_biotype: protein_coding
description:
  Hypothetical protein yaiL; Escherichia coli K-12 ortholog: b0354; Escherichia coli O157:H7 ortholog: z0454.


ensembl_gene_id: c0464
symbol: yaiM
gene_biotype: protein_coding
description:
  Hypothetical protein yaiM; Serine hydrolase involved in the detoxification of formaldehyde. Hydrolyzes S-formylglutathione to glutathione and formate (By similarity).


ensembl_gene_id: c0465
symbol: adhC
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase class III; Has high formaldehyde dehydrogenase activity in the presence of glutathione and catalyzes the oxidation of normal alcohols in a reaction that is not GSH-dependent; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.


ensembl_gene_id: c0470
symbol: c0470
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 55 to 190 of 228 are 94.11 pct identical to residues 1 to 136 of 136 from MG1655 : b0364.


ensembl_gene_id: c0472
symbol: tauA
gene_biotype: protein_coding
description:
  Taurine-binding periplasmic protein precursor; Sulfate starvation-induced protein 1; Escherichia coli K-12 ortholog: b0365; Escherichia coli O157:H7 ortholog: z0464.


ensembl_gene_id: c0473
symbol: tauB
gene_biotype: protein_coding
description:
  Taurine transport ATP-binding protein tauB; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.


ensembl_gene_id: c0475
symbol: tauC
gene_biotype: protein_coding
description:
  Taurine transport system permease protein tauC; Escherichia coli K-12 ortholog: b0367; Escherichia coli O157:H7 ortholog: z0466.


ensembl_gene_id: c0476
symbol: tauD
gene_biotype: protein_coding
description:
  Alpha-ketoglutarate-dependent taurine dioxygenase; Escherichia coli K-12 ortholog: b0368; Escherichia coli O157:H7 ortholog: z0467.


ensembl_gene_id: c0477
symbol: hemB
gene_biotype: protein_coding
description:
  Delta-aminolevulinic acid dehydratase; Escherichia coli K-12 ortholog: b0369; Escherichia coli O157:H7 ortholog: z0468; Belongs to the ALAD family.


ensembl_gene_id: c0480
symbol: yaiH
gene_biotype: protein_coding
description:
  Penicillin-binding protein ampH; Escherichia coli K-12 ortholog: b0376; Escherichia coli O157:H7 ortholog: z0472.


ensembl_gene_id: c0483
symbol: yaiW
gene_biotype: protein_coding
description:
  Hypothetical protein yaiW; Escherichia coli K-12 ortholog: b0378; Escherichia coli O157:H7 ortholog: z0474.


ensembl_gene_id: c0484
symbol: yaiY
gene_biotype: protein_coding
description:
  Hypothetical protein yaiY; Escherichia coli K-12 ortholog: b0379; Escherichia coli O157:H7 ortholog: z0475.


ensembl_gene_id: c0486
symbol: yaiZ
gene_biotype: protein_coding
description:
  Hypothetical protein yaiZ; Escherichia coli K-12 ortholog: b0380; Escherichia coli O157:H7 ortholog: z0476.


ensembl_gene_id: c0489
symbol: yaiB
gene_biotype: protein_coding
description:
  Hypothetical protein yaiB; Inhibits RpoS proteolysis by regulating RssB activity, thereby increasing the stability of the sigma stress factor RpoS especially during phosphate starvation, but also in stationary phase and during nitrogen starvation. Its effect on RpoS stability is due to its interaction with RssB, which probably blocks the interaction of RssB with RpoS, and the consequent delivery of the RssB-RpoS complex to the ClpXP protein degradation pathway.


ensembl_gene_id: c0490
symbol: phoA
gene_biotype: protein_coding
description:
  Alkaline phosphatase precursor; Escherichia coli K-12 ortholog: b0383; Escherichia coli O157:H7 ortholog: z0479; Belongs to the alkaline phosphatase family.


ensembl_gene_id: c0491
symbol: psiF
gene_biotype: protein_coding
description:
  Phosphate starvation-inducible protein psiF precursor; Escherichia coli K-12 ortholog: b0384; Escherichia coli O157:H7 ortholog: z0480.


ensembl_gene_id: c0493
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: c0494
symbol: yaiI
gene_biotype: protein_coding
description:
  Hypothetical protein yaiI; Escherichia coli K-12 ortholog: b0387; Escherichia coli O157:H7 ortholog: z0483; Belongs to the UPF0178 family.


ensembl_gene_id: c0495
symbol: aroL
gene_biotype: protein_coding
description:
  Shikimate kinase II; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.


ensembl_gene_id: c0496
symbol: yaiA
gene_biotype: protein_coding
description:
  Hypothetical protein yaiA; Escherichia coli K-12 ortholog: b0389; Escherichia coli O157:H7 ortholog: z0485.


ensembl_gene_id: c0499
symbol: yaiE
gene_biotype: protein_coding
description:
  Hypothetical protein yaiE; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.


ensembl_gene_id: c0501
symbol: ykiA
gene_biotype: protein_coding
description:
  Hypothetical protein ykiA; Escherichia coli K-12 ortholog: b0392; Escherichia coli O157:H7 ortholog: z0489.


ensembl_gene_id: c0502
symbol: rdgC
gene_biotype: protein_coding
description:
  Recombination associated protein rdgC; May be involved in recombination; Belongs to the RdgC family.


ensembl_gene_id: c0503
symbol: c0503
gene_biotype: protein_coding
description:
  Hypothetical protein yajF; Escherichia coli K-12 ortholog: b0394; Escherichia coli O157:H7 ortholog: z0493.


ensembl_gene_id: c0504
symbol: araJ
gene_biotype: protein_coding
description:
  Protein araJ precursor; Escherichia coli K-12 ortholog: b0396; Escherichia coli O157:H7 ortholog: z0494.


ensembl_gene_id: c0505
symbol: sbcC
gene_biotype: protein_coding
description:
  Exonuclease sbcC; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SMC family. SbcC subfamily.


ensembl_gene_id: c0506
symbol: sbcD
gene_biotype: protein_coding
description:
  Nuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: c0508
symbol: phoB
gene_biotype: protein_coding
description:
  Phosphate regulon transcriptional Regulatory protein phoB; Escherichia coli K-12 ortholog: b0399; Escherichia coli O157:H7 ortholog: z0497.


ensembl_gene_id: c0509
symbol: phoR
gene_biotype: protein_coding
description:
  Phosphate regulon sensor protein phoR; Escherichia coli K-12 ortholog: b0400; Escherichia coli O157:H7 ortholog: z0498.


ensembl_gene_id: c0511
symbol: brnQ
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids.


ensembl_gene_id: c0512
symbol: proY
gene_biotype: protein_coding
description:
  Proline-specific permease proY; Permease that is involved in the transport across the cytoplasmic membrane of proline; Belongs to the amino acid-polyamine-organocation (APC) superfamily. Amino acid transporter (AAT) (TC 2.A.3.1) family.


ensembl_gene_id: c0513
symbol: malZ
gene_biotype: protein_coding
description:
  Maltodextrin glucosidase; Escherichia coli K-12 ortholog: b0403; Escherichia coli O157:H7 ortholog: z0501; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: c0514
symbol: yajB
gene_biotype: protein_coding
description:
  Hypothetical protein yajB; Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; Belongs to the AcpH family.


ensembl_gene_id: c0515
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: c0516
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form th [...]


ensembl_gene_id: c0517
symbol: yajC
gene_biotype: protein_coding
description:
  Hypothetical protein yajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: c0518
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: c0519
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: c0520
symbol: yajD
gene_biotype: protein_coding
description:
  Hypothetical protein yajD; Escherichia coli K-12 ortholog: b0410; Escherichia coli O157:H7 ortholog: z0511; Belongs to the HNH nuclease family.


ensembl_gene_id: c0521
symbol: tsx
gene_biotype: protein_coding
description:
  Nucleoside-specific channel-forming protein tsx precursor; Escherichia coli K-12 ortholog: b0411; Escherichia coli O157:H7 ortholog: z0512.


ensembl_gene_id: c0522
symbol: yajI
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yajI precursor; Escherichia coli K-12 ortholog: b0412; Escherichia coli O157:H7 ortholog: z0513.


ensembl_gene_id: c0523
symbol: ybaD
gene_biotype: protein_coding
description:
  Hypothetical protein ybaD; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: c0524
symbol: ribD
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein ribD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: c0525
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family.


ensembl_gene_id: c0527
symbol: nusB
gene_biotype: protein_coding
description:
  N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: c0528
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: c0529
symbol: pgpA
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).


ensembl_gene_id: c0530
symbol: yajO
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase yajO; Escherichia coli K-12 ortholog: b0419; Escherichia coli O157:H7 ortholog: z0522.


ensembl_gene_id: c0531
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: c0532
symbol: ispA
gene_biotype: protein_coding
description:
  Geranyltranstransferase; Escherichia coli K-12 ortholog: b0421; Escherichia coli O157:H7 ortholog: z0524; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: c0533
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: c0534
symbol: yajK
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein thiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.


ensembl_gene_id: c0535
symbol: thiJ
gene_biotype: protein_coding
description:
  4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; Escherichia coli K-12 ortholog: b0424; Escherichia coli O157:H7 ortholog: z0527.


ensembl_gene_id: c0536
symbol: apbA
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: c0538
symbol: yajR
gene_biotype: protein_coding
description:
  Hypothetical transport protein yajR; Escherichia coli K-12 ortholog: b0427; Escherichia coli O157:H7 ortholog: z0530.


ensembl_gene_id: c0539
symbol: cyoE
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: c0540
symbol: cyoD
gene_biotype: protein_coding
description:
  Ubiquinol oxidase chain D; Escherichia coli K-12 ortholog: b0429; Escherichia coli O157:H7 ortholog: z0532.


ensembl_gene_id: c0541
symbol: cyoC
gene_biotype: protein_coding
description:
  Cytochrome O ubiquinol oxidase subunit III; Cytochrome bo(3) ubiquinol terminal oxidase is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at high aeration. Has proton pump activity across the membrane in addition to electron transfer, pumping 2 protons/electron (By similarity).


ensembl_gene_id: c0542
symbol: cyoB
gene_biotype: protein_coding
description:
  Ubiquinol oxidase polypeptide I; Cytochrome bo(3) ubiquinol terminal oxidase is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at high aeration. Has proton pump activity across the membrane in addition to electron transfer, pumping 2 protons/electron (By similarity).


ensembl_gene_id: c0543
symbol: cyoA
gene_biotype: protein_coding
description:
  Ubiquinol oxidase polypeptide II precursor; Cytochrome bo(3) ubiquinol terminal oxidase is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at high aeration. Has proton pump activity across the membrane in addition to electron transfer, pumping 2 protons/electron (By similarity).


ensembl_gene_id: c0546
symbol: yajG
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yajG precursor; Escherichia coli K-12 ortholog: b0434; Escherichia coli O157:H7 ortholog: z0537.


ensembl_gene_id: c0551
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.


ensembl_gene_id: c0553
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: c0554
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: c0555
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. Endogenous substrates include the regulatory proteins RcsA and SulA, the transcriptional activator SoxS, and UmuD. Its overproduction spec [...]


ensembl_gene_id: c0556
symbol: hupB
gene_biotype: protein_coding
description:
  DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: c0557
symbol: ybaU
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase D; PPIases accelerate the folding of proteins. Seems to be involved in the folding of outer membrane proteins (By similarity).


ensembl_gene_id: c0558
symbol: ybaV
gene_biotype: protein_coding
description:
  Hypothetical protein ybaV precursor; Escherichia coli K-12 ortholog: b0442; Escherichia coli O157:H7 ortholog: z0549.


ensembl_gene_id: c0559
symbol: ybaW
gene_biotype: protein_coding
description:
  Hypothetical protein ybaW; Escherichia coli K-12 ortholog: b0443; Escherichia coli O157:H7 ortholog: z0550.


ensembl_gene_id: c0560
symbol: ybaX
gene_biotype: protein_coding
description:
  Hypothetical protein ybaX; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: c0561
symbol: ybaE
gene_biotype: protein_coding
description:
  Hypothetical protein ybaE; Escherichia coli K-12 ortholog: b0445; Escherichia coli O157:H7 ortholog: z0552.


ensembl_gene_id: c0562
symbol: cof
gene_biotype: protein_coding
description:
  Cof protein; Catalyzes the hydrolysis of 4-amino-2-methyl-5- hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5- hydroxymethylpyrimidine phosphate (HMP-P).


ensembl_gene_id: c0563
symbol: c0563
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 18 to 169 of 169 are 94.07 pct identical to residues 1 to 152 of 152 from SwissProt.40 : >sp|Q57334|T200_SALTY Transposase for insertion sequence element IS200.


ensembl_gene_id: c0564
symbol: ybaO
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ybaO; Plays a role in L-cysteine detoxification. Binds to the dlsT(yhaO)-yhaM operon promoter in the presence but not absence of L- cysteine; activates transcription from the dlsT(yhaO)-yhaM operon.


ensembl_gene_id: c0565
symbol: mdlA
gene_biotype: protein_coding
description:
  Multidrug resistance-like ATP-binding protein mdlA; Escherichia coli K-12 ortholog: b0448; Escherichia coli O157:H7 ortholog: z0557.


ensembl_gene_id: c0566
symbol: mdlB
gene_biotype: protein_coding
description:
  Multidrug resistance-like ATP-binding protein mdlB; Escherichia coli K-12 ortholog: b0449; Escherichia coli O157:H7 ortholog: z0559; Belongs to the ABC transporter superfamily. Drug exporter-2 (TC 3.A.1.117) family.


ensembl_gene_id: c0568
symbol: glnK
gene_biotype: protein_coding
description:
  Nitrogen Regulatory protein P-II 2; P-II indirectly controls the transcription of the glutamine synthetase gene (GlnA). P-II prevents NR-II-catalyzed conversion of NR- I to NR-I-phosphate, the transcriptional activator of GlnA. When P-II is uridylylated to P-II-UMP, these events are reversed. When the ratio of Gln to 2-ketoglutarate decreases, P-II is uridylylated to P-II-UMP, which causes the deadenylation of glutamine synthetase by GlnE, so activating the enzyme (By similarity); Belongs to the P(II) protein family.


ensembl_gene_id: c0570
symbol: amtB
gene_biotype: protein_coding
description:
  Probable ammonium transporter; Escherichia coli K-12 ortholog: b0451; Escherichia coli O157:H7 ortholog: z0563.


ensembl_gene_id: c0571
symbol: tesB
gene_biotype: protein_coding
description:
  Acyl-CoA thioesterase II; Escherichia coli K-12 ortholog: b0452; Escherichia coli O157:H7 ortholog: z0564.


ensembl_gene_id: c0572
symbol: ybaY
gene_biotype: protein_coding
description:
  Hypothetical protein ybaY precursor; Escherichia coli K-12 ortholog: b0453; Escherichia coli O157:H7 ortholog: z0565.


ensembl_gene_id: c0573
symbol: ybaZ
gene_biotype: protein_coding
description:
  Hypothetical protein ybaZ; Escherichia coli K-12 ortholog: b0454; Escherichia coli O157:H7 ortholog: z0566.


ensembl_gene_id: c0574
symbol: ybaA
gene_biotype: protein_coding
description:
  Hypothetical protein ybaA; Escherichia coli K-12 ortholog: b0456; Escherichia coli O157:H7 ortholog: z0568.


ensembl_gene_id: c0575
symbol: ylaB
gene_biotype: protein_coding
description:
  Hypothetical protein ylaB; Escherichia coli K-12 ortholog: b0457; Escherichia coli O157:H7 ortholog: z0569.


ensembl_gene_id: c0576
symbol: ylaC
gene_biotype: protein_coding
description:
  Hypothetical protein ylaC; Escherichia coli K-12 ortholog: b0458; Escherichia coli O157:H7 ortholog: z0570.


ensembl_gene_id: c0577
symbol: ylaD
gene_biotype: protein_coding
description:
  Maltose O-acetyltransferase; Escherichia coli K-12 ortholog: b0459; Escherichia coli O157:H7 ortholog: z0571.


ensembl_gene_id: c0578
symbol: hha
gene_biotype: protein_coding
description:
  Haemolysin expression modulating protein; Down-regulates hemolysin expression, in complex with H-NS, and can also stimulate transposition events in vivo. Modifies the set of genes regulated by H-NS; Hha and Cnu (YdgT) increase the number of genes DNA bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex. Binds DNA and influences DNA topology in response to environmental stimuli. Decreases biofilm formation (By similarity).


ensembl_gene_id: c0579
symbol: ybaJ
gene_biotype: protein_coding
description:
  Hypothetical protein ybaJ; Attenuates Hha toxicity and regulates biofilm formation. Binds to various coding and intergenic regions of genomic DNA (By similarity).


ensembl_gene_id: c0580
symbol: acrB
gene_biotype: protein_coding
description:
  Acriflavine resistance protein B; Escherichia coli K-12 ortholog: b0462; Escherichia coli O157:H7 ortholog: z0576.


ensembl_gene_id: c0581
symbol: acrA
gene_biotype: protein_coding
description:
  Acriflavine resistance protein A precursor; Escherichia coli K-12 ortholog: b0463; Escherichia coli O157:H7 ortholog: z0578; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: c0584
symbol: aefA
gene_biotype: protein_coding
description:
  Potassium efflux system kefA; AefA protein; Escherichia coli K-12 ortholog: b0465; Escherichia coli O157:H7 ortholog: z0581.


ensembl_gene_id: c0585
symbol: ybaM
gene_biotype: protein_coding
description:
  Hypothetical protein ybaM; Escherichia coli K-12 ortholog: b0466; Escherichia coli O157:H7 ortholog: z0583.


ensembl_gene_id: c0586
symbol: priC
gene_biotype: protein_coding
description:
  Primosomal replication protein N; Escherichia coli K-12 ortholog: b0467; Escherichia coli O157:H7 ortholog: z0584.


ensembl_gene_id: c0587
symbol: ybaN
gene_biotype: protein_coding
description:
  Hypothetical protein ybaN; Escherichia coli K-12 ortholog: b0468; Escherichia coli O157:H7 ortholog: z0585.


ensembl_gene_id: c0588
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: c0589
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: c0590
symbol: c0590
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Residues 1 to 125 of 125 are 99.19 pct identical to residues 1 to 125 of 125 from GenPept.129 : >gb|AAB40225.1| (U82664) hypothetical protein [Escherichia coli].


ensembl_gene_id: c0591
symbol: ybaB
gene_biotype: protein_coding
description:
  Hypothetical protein ybaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: c0592
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: c0594
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: c0596
symbol: ybaC
gene_biotype: protein_coding
description:
  Acetyl esterase; Displays esterase activity towards short chain fatty esters (acyl chain length of up to 8 carbons). Able to hydrolyze triacetylglycerol (triacetin) and tributyrylglycerol (tributyrin), but not trioleylglycerol (triolein) or cholesterol oleate. Negatively regulates MalT activity by antagonizing maltotriose binding. Inhibits MelA galactosidase activity.


ensembl_gene_id: c0597
symbol: gsk
gene_biotype: protein_coding
description:
  Inosine-guanosine kinase; Escherichia coli K-12 ortholog: b0477; Escherichia coli O157:H7 ortholog: z0596; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: c0598
symbol: ybaL
gene_biotype: protein_coding
description:
  Hypothetical protein ybaL; Escherichia coli K-12 ortholog: b0478; Escherichia coli O157:H7 ortholog: z0597; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: c0599
symbol: fsr
gene_biotype: protein_coding
description:
  Fosmidomycin resistance protein; Escherichia coli K-12 ortholog: b0479; Escherichia coli O157:H7 ortholog: z0598.


ensembl_gene_id: c0600
symbol: ushA
gene_biotype: protein_coding
description:
  Protein ushA precursor; Escherichia coli K-12 ortholog: b0480; Escherichia coli O157:H7 ortholog: z0599; bifunctional; UDP-sugar hydrolase; 5'-nucleotidase; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: c0601
symbol: ybaK
gene_biotype: protein_coding
description:
  Protein ybaK; Escherichia coli K-12 ortholog: b0481; Escherichia coli O157:H7 ortholog: z0600; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: c0602
symbol: ybaP
gene_biotype: protein_coding
description:
  Hypothetical protein ybaP; Escherichia coli K-12 ortholog: b0482; Escherichia coli O157:H7 ortholog: z0601.


ensembl_gene_id: c0603
symbol: ybaQ
gene_biotype: protein_coding
description:
  Hypothetical protein ybaQ; Escherichia coli K-12 ortholog: b0483; Escherichia coli O157:H7 ortholog: z0602; Belongs to the VapA/VapI family.


ensembl_gene_id: c0604
symbol: ybaR
gene_biotype: protein_coding
description:
  Copper-transporting P-type ATPase; Escherichia coli K-12 ortholog: b0484; Escherichia coli O157:H7 ortholog: z0604.


ensembl_gene_id: c0605
symbol: ybaS
gene_biotype: protein_coding
description:
  Probable glutaminase ybaS; Escherichia coli K-12 ortholog: b0485; Escherichia coli O157:H7 ortholog: z0606; Belongs to the glutaminase family.


ensembl_gene_id: c0606
symbol: ybaT
gene_biotype: protein_coding
description:
  Hypothetical transport protein ybaT; Escherichia coli K-12 ortholog: b0486; Escherichia coli O157:H7 ortholog: z0607.


ensembl_gene_id: c0607
symbol: ybbI
gene_biotype: protein_coding
description:
  Transcriptional regulator cueR; Regulates the transcription of the copA and cueO genes. It detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations (By similarity).


ensembl_gene_id: c0608
symbol: c0608
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 406 of 407 are 55.58 pct identical to residues 1 to 411 of 412 from GenPept.129 : >gb|AAL19611.1| (AE008726) putative cytoplasmic protein [Salmonella typhimurium LT2].


ensembl_gene_id: c0609
symbol: ybbJ
gene_biotype: protein_coding
description:
  Hypothetical protein ybbJ; Escherichia coli K-12 ortholog: b0488; Escherichia coli O157:H7 ortholog: z0641.


ensembl_gene_id: c0610
symbol: ybbK
gene_biotype: protein_coding
description:
  Hypothetical protein ybbK; Escherichia coli K-12 ortholog: b0489; Escherichia coli O157:H7 ortholog: z0642.


ensembl_gene_id: c0611
symbol: ybbL
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein ybbL; Escherichia coli K-12 ortholog: b0490; Escherichia coli O157:H7 ortholog: z0643.


ensembl_gene_id: c0613
symbol: ybbN
gene_biotype: protein_coding
description:
  Hypothetical protein ybbN; Escherichia coli K-12 ortholog: b0492; Escherichia coli O157:H7 ortholog: z0645.


ensembl_gene_id: c0614
symbol: ybbO
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ybbO; Escherichia coli K-12 ortholog: b0493; Escherichia coli O157:H7 ortholog: z0646; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: c0615
symbol: tesA
gene_biotype: protein_coding
description:
  Acyl-CoA thioesterase I precursor; TesA is a multifunctional esterase that can act as a thioesterase, arylesterase, lysophospholipase and protease.


ensembl_gene_id: c0616
symbol: ybbA
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein ybbA; Escherichia coli K-12 ortholog: b0495; Escherichia coli O157:H7 ortholog: z0648.


ensembl_gene_id: c0617
symbol: ybbP
gene_biotype: protein_coding
description:
  Hypothetical protein ybbP; Escherichia coli K-12 ortholog: b0496; Escherichia coli O157:H7 ortholog: z0649.


ensembl_gene_id: c0618
symbol: ybbB
gene_biotype: protein_coding
description:
  Hypothetical protein ybbB; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.


ensembl_gene_id: c0619
symbol: ybbS
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ybbS; Positive regulator essential for the expression of allD operon. Binds to the allD promoter (By similarity).


ensembl_gene_id: c0620
symbol: ybbT
gene_biotype: protein_coding
description:
  Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the anaerobic utilization of allantoin as sole nitrogen source. Reinforces the induction of genes involved in the degradation of allantoin and glyoxylate by producing glyoxylate.


ensembl_gene_id: c0621
symbol: ybbU
gene_biotype: protein_coding
description:
  Negative regulator of allantoin and glyoxylate utilization operons; Negative regulator of allantoin and glyoxylate utilization operons. Binds to the gcl promoter and to the allS-allA intergenic region (By similarity).


ensembl_gene_id: c0622
symbol: gcl
gene_biotype: protein_coding
description:
  Glyoxylate carboligase; Escherichia coli K-12 ortholog: b0507; Escherichia coli O157:H7 ortholog: z0661; Belongs to the TPP enzyme family.


ensembl_gene_id: c0623
symbol: gip
gene_biotype: protein_coding
description:
  Hydroxypyruvate isomerase; Escherichia coli K-12 ortholog: b0508; Escherichia coli O157:H7 ortholog: z0662; Belongs to the hyi family.


ensembl_gene_id: c0624
symbol: ybbQ
gene_biotype: protein_coding
description:
  2-hydroxy-3-oxopropionate reductase; Escherichia coli K-12 ortholog: b0509; Escherichia coli O157:H7 ortholog: z0663.


ensembl_gene_id: c0625
symbol: ybbW
gene_biotype: protein_coding
description:
  Putative allantoin permease; Allantoin transport protein; Escherichia coli K-12 ortholog: b0511; Escherichia coli O157:H7 ortholog: z0665.


ensembl_gene_id: c0626
symbol: ybbX
gene_biotype: protein_coding
description:
  Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.


ensembl_gene_id: c0627
symbol: ybbY
gene_biotype: protein_coding
description:
  Putative purine permease ybbY; Escherichia coli K-12 ortholog: b0513; Escherichia coli O157:H7 ortholog: z0668.


ensembl_gene_id: c0628
symbol: ybbZ
gene_biotype: protein_coding
description:
  Glycerate kinase 1; Escherichia coli K-12 ortholog: b0514; Escherichia coli O157:H7 ortholog: z0669; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: c0629
symbol: ylbA
gene_biotype: protein_coding
description:
  Hypothetical protein ylbA; Escherichia coli K-12 ortholog: b0515; Escherichia coli O157:H7 ortholog: z0670.


ensembl_gene_id: c0630
symbol: ylbB
gene_biotype: protein_coding
description:
  Allantoate amidohydrolase; Escherichia coli K-12 ortholog: b0516; Escherichia coli O157:H7 ortholog: z0671.


ensembl_gene_id: c0631
symbol: c0631
gene_biotype: protein_coding
description:
  Ureidoglycolate dehydrogenase; Escherichia coli K-12 ortholog: b0517; Escherichia coli O157:H7 ortholog: z0672; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: c0633
symbol: ylbE
gene_biotype: protein_coding
description:
  Hypothetical protein ylbE; Escherichia coli K-12 ortholog: b0519; Escherichia coli O157:H7 ortholog: z0674.


ensembl_gene_id: c0634
symbol: ylbF
gene_biotype: protein_coding
description:
  Hypothetical protein ylbF; Escherichia coli K-12 ortholog: b0520; Escherichia coli O157:H7 ortholog: z0675.


ensembl_gene_id: c0635
symbol: arcC
gene_biotype: protein_coding
description:
  Carbamate kinase; Escherichia coli K-12 ortholog: b0521; Escherichia coli O157:H7 ortholog: z0676; Belongs to the carbamate kinase family.


ensembl_gene_id: c0636
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: c0637
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: c0639
symbol: ybbF
gene_biotype: protein_coding
description:
  UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: c0640
symbol: c0640
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Residues 1 to 228 of 228 are 96.49 pct identical to residues 1 to 228 of 228 from GenPept.129 : >gb|AAB40278.1| (U82664) hypothetical protein [Escherichia coli].


ensembl_gene_id: c0641
symbol: ppiB
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: c0642
symbol: cysS
gene_biotype: protein_coding
description:
  Cysteinyl-tRNA synthetase; Escherichia coli K-12 ortholog: b0526; Escherichia coli O157:H7 ortholog: z0681; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: c0643
symbol: ybcI
gene_biotype: protein_coding
description:
  Hypothetical protein ybcI; Escherichia coli K-12 ortholog: b0527; Escherichia coli O157:H7 ortholog: z0682.


ensembl_gene_id: c0644
symbol: ybcJ
gene_biotype: protein_coding
description:
  Hypothetical protein ybcJ; Escherichia coli K-12 ortholog: b0528; Escherichia coli O157:H7 ortholog: z0683.


ensembl_gene_id: c0645
symbol: folD
gene_biotype: protein_coding
description:
  FolD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: c0649
symbol: ydfM
gene_biotype: protein_coding
description:
  Tail fiber assembly protein homolog from lambdoid prophage Qin; Escherichia coli K-12 ortholog: b1546; Escherichia coli O157:H7 ortholog: z1920.


ensembl_gene_id: c0651
symbol: c0651
gene_biotype: protein_coding
description:
  Hypothetical protein ybcY precursor; Escherichia coli K-12 ortholog: b0562; Escherichia coli O157:H7 ortholog: z1925.


ensembl_gene_id: c0652
symbol: ompT
gene_biotype: protein_coding
description:
  Protease VII precursor; Escherichia coli K-12 ortholog: b0565; Escherichia coli O157:H7 ortholog: z1931.


ensembl_gene_id: c0653
symbol: ybcH
gene_biotype: protein_coding
description:
  Hypothetical protein ybcH precursor; Escherichia coli K-12 ortholog: b0567; Escherichia coli O157:H7 ortholog: z0697.


ensembl_gene_id: c0654
symbol: nfrA
gene_biotype: protein_coding
description:
  Bacteriophage N4 adsorption protein A precursor; Escherichia coli K-12 ortholog: b0568; Escherichia coli O157:H7 ortholog: z0698.


ensembl_gene_id: c0655
symbol: nfrB
gene_biotype: protein_coding
description:
  Bacteriophage N4 adsorption protein B; Escherichia coli K-12 ortholog: b0569; Escherichia coli O157:H7 ortholog: z0699.


ensembl_gene_id: c0656
symbol: cusS
gene_biotype: protein_coding
description:
  Sensor kinase cusS; Member of the two-component regulatory system CusS/CusR involved in response to copper and silver. Acts as a copper/silver ion sensor. Activates CusR by phosphorylation.


ensembl_gene_id: c0657
symbol: cusR
gene_biotype: protein_coding
description:
  Transcriptional Regulatory protein cusR; Member of the two-component regulatory system CusS/CusR involved in response to copper and silver.


ensembl_gene_id: c0658
symbol: cusC
gene_biotype: protein_coding
description:
  Probable outer membrane lipoprotein cusC precursor; Forms pores that allow passive diffusion of cations across the outer membrane. Part of a cation efflux system that mediates resistance to copper and silver (By similarity); Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.


ensembl_gene_id: c0659
symbol: cusX
gene_biotype: protein_coding
description:
  Hypothetical protein cusX precursor; Part of a cation efflux system that mediates resistance to copper and silver. Binds one copper per polypeptide (By similarity).


ensembl_gene_id: c0660
symbol: cusB
gene_biotype: protein_coding
description:
  Putative copper efflux system protein cusB precursor; Part of a cation efflux system that mediates resistance to copper and silver.


ensembl_gene_id: c0661
symbol: cusA
gene_biotype: protein_coding
description:
  Putative cation efflux system protein cusA; Part of a cation efflux system that mediates resistance to copper and silver; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: c0662
symbol: pheP
gene_biotype: protein_coding
description:
  Phenylalanine-specific permease; Escherichia coli K-12 ortholog: b0576; Escherichia coli O157:H7 ortholog: z0715.


ensembl_gene_id: c0663
symbol: ybdG
gene_biotype: protein_coding
description:
  Hypothetical protein ybdG; Escherichia coli K-12 ortholog: b0577; Escherichia coli O157:H7 ortholog: z0716.


ensembl_gene_id: c0664
symbol: nfnB
gene_biotype: protein_coding
description:
  Oxygen-insensitive NAD(P)H nitroreductase; Escherichia coli K-12 ortholog: b0578; Escherichia coli O157:H7 ortholog: z0717.


ensembl_gene_id: c0665
symbol: ybdF
gene_biotype: protein_coding
description:
  Hypothetical protein ybdF; Escherichia coli K-12 ortholog: b0579; Escherichia coli O157:H7 ortholog: z0718.


ensembl_gene_id: c0666
symbol: ybdJ
gene_biotype: protein_coding
description:
  Hypothetical protein ybdJ; Escherichia coli K-12 ortholog: b0580; Escherichia coli O157:H7 ortholog: z0719.


ensembl_gene_id: c0667
symbol: ybdK
gene_biotype: protein_coding
description:
  Hypothetical protein ybdK; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity.


ensembl_gene_id: c0668
symbol: entD
gene_biotype: protein_coding
description:
  4'-phosphopantetheinyl transferase entD; Escherichia coli K-12 ortholog: b0583; Escherichia coli O157:H7 ortholog: z0723; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: c0669
symbol: fepA
gene_biotype: protein_coding
description:
  Ferrienterobactin receptor precursor; Enterobactin outer-membrane receptor; Escherichia coli K-12 ortholog: b0584; Escherichia coli O157:H7 ortholog: z0724.


ensembl_gene_id: c0671
symbol: fes
gene_biotype: protein_coding
description:
  Ferric enterobactin esterase; Escherichia coli K-12 ortholog: b0585; Escherichia coli O157:H7 ortholog: z0725.


ensembl_gene_id: c0673
symbol: entF
gene_biotype: protein_coding
description:
  Enterobactin synthetase component F; Escherichia coli K-12 ortholog: b0586; Escherichia coli O157:H7 ortholog: z0727.


ensembl_gene_id: c0674
symbol: fepE
gene_biotype: protein_coding
description:
  Ferric enterobactin transport protein fepE; Escherichia coli K-12 ortholog: b0587; Escherichia coli O157:H7 ortholog: z0728.


ensembl_gene_id: c0675
symbol: fepC
gene_biotype: protein_coding
description:
  Ferric enterobactin transport ATP-binding protein fepC; Escherichia coli K-12 ortholog: b0588; Escherichia coli O157:H7 ortholog: z0729.


ensembl_gene_id: c0676
symbol: fepG
gene_biotype: protein_coding
description:
  Ferric enterobactin transport system permease protein fepG; Escherichia coli K-12 ortholog: b0589; Escherichia coli O157:H7 ortholog: z0731; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: c0677
symbol: fepD
gene_biotype: protein_coding
description:
  Ferric enterobactin transport system permease protein fepD; Escherichia coli K-12 ortholog: b0590; Escherichia coli O157:H7 ortholog: z0732; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: c0678
symbol: ybdA
gene_biotype: protein_coding
description:
  Hypothetical membrane protein P43; Component of an export pathway for enterobactin. Belongs to the major facilitator superfamily. EntS (TC 2.A.1.38) family.


ensembl_gene_id: c0679
symbol: fepB
gene_biotype: protein_coding
description:
  Ferrienterobactin-binding periplasmic protein precursor; Binds ferrienterobactin; part of the binding-protein- dependent transport system for uptake of ferrienterobactin. Belongs to the bacterial solute-binding protein 8 family.


ensembl_gene_id: c0680
symbol: entC
gene_biotype: protein_coding
description:
  Isochorismate synthase entC; Escherichia coli K-12 ortholog: b0593; Escherichia coli O157:H7 ortholog: z0735.


ensembl_gene_id: c0681
symbol: entE
gene_biotype: protein_coding
description:
  Enterobactin synthetase component E; Enterochelin synthase E; Escherichia coli K-12 ortholog: b0594; Escherichia coli O157:H7 ortholog: z0736; bifunctional; 2,3-dihydroxybenzoate-AMP ligase; S-dihydroxybenzoyltransferase.


ensembl_gene_id: c0683
symbol: entA
gene_biotype: protein_coding
description:
  2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; Escherichia coli K-12 ortholog: b0596; Escherichia coli O157:H7 ortholog: z0738.


ensembl_gene_id: c0684
symbol: ybdB
gene_biotype: protein_coding
description:
  Hypothetical protein ybdB; Required for optimal enterobactin synthesis. Acts as a proofreading enzyme that prevents EntB misacylation by hydrolyzing the thioester bound existing between EntB and wrongly charged molecules. Belongs to the thioesterase PaaI family.


ensembl_gene_id: c0685
symbol: cstA
gene_biotype: protein_coding
description:
  Carbon starvation protein A; Escherichia coli K-12 ortholog: b0598; Escherichia coli O157:H7 ortholog: z0740.


ensembl_gene_id: c0686
symbol: ybdD
gene_biotype: protein_coding
description:
  Hypothetical protein yjiX; Escherichia coli K-12 ortholog: b4353; Escherichia coli O157:H7 ortholog: z5952; To E.coli YjiX.


ensembl_gene_id: c0687
symbol: ybdH
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ybdH; Escherichia coli K-12 ortholog: b0599; Escherichia coli O157:H7 ortholog: z0742.


ensembl_gene_id: c0688
symbol: ybdL
gene_biotype: protein_coding
description:
  Hypothetical aminotransferase ybdL; Escherichia coli K-12 ortholog: b0600; Escherichia coli O157:H7 ortholog: z0743.


ensembl_gene_id: c0689
symbol: c0689
gene_biotype: protein_coding
description:
  Hypothetical protein ybdM; Escherichia coli K-12 ortholog: b0601; Escherichia coli O157:H7 ortholog: z0744.


ensembl_gene_id: c0690
symbol: c0690
gene_biotype: protein_coding
description:
  Hypothetical protein ybdN; Escherichia coli K-12 ortholog: b0602; Escherichia coli O157:H7 ortholog: z0746.


ensembl_gene_id: c0691
symbol: ybdO
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ybdO; Escherichia coli K-12 ortholog: b0603; Escherichia coli O157:H7 ortholog: z0747; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c0692
symbol: dsbG
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein dsbG precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: c0694
symbol: ahpC
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase C22 protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: c0695
symbol: ahpF
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase subunit F; Escherichia coli K-12 ortholog: b0606; Escherichia coli O157:H7 ortholog: z0750.


ensembl_gene_id: c0696
symbol: ybdQ
gene_biotype: protein_coding
description:
  Unknown protein from 2D-page; Spots PR25/LM16/2D_000LR3; Escherichia coli K-12 ortholog: b0607; Escherichia coli O157:H7 ortholog: z0751; Belongs to the universal stress protein A family.


ensembl_gene_id: c0697
symbol: c0697
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Escherichia coli K-12 ortholog: b0609; Escherichia coli O157:H7 ortholog: z0753.


ensembl_gene_id: c0698
symbol: rnk
gene_biotype: protein_coding
description:
  Regulator of nucleoside diphosphate kinase; May act as an anti-Gre factor; Belongs to the Rnk family.


ensembl_gene_id: c0699
symbol: rna
gene_biotype: protein_coding
description:
  Ribonuclease I precursor; Escherichia coli K-12 ortholog: b0611; Escherichia coli O157:H7 ortholog: z0755; Belongs to the RNase T2 family.


ensembl_gene_id: c0700
symbol: ybdS
gene_biotype: protein_coding
description:
  Citrate carrier/transporter; Escherichia coli K-12 ortholog: b0612; Escherichia coli O157:H7 ortholog: z0756.


ensembl_gene_id: c0701
symbol: citG
gene_biotype: protein_coding
description:
  2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; Catalyzes the formation of 2-(5''-triphosphoribosyl)-3'- dephosphocoenzyme-A, the precursor of the prosthetic group of the holo- acyl carrier protein (gamma chain) of citrate lyase, from ATP and dephospho-CoA; Belongs to the CitG/MdcB family.


ensembl_gene_id: c0702
symbol: ybdU
gene_biotype: protein_coding
description:
  Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; Transfers 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A on a serine residue to the apo-acyl carrier protein (gamma chain) of the citrate lyase to yield holo-acyl carrier protein; Belongs to the CitX family.


ensembl_gene_id: c0704
symbol: citF
gene_biotype: protein_coding
description:
  Citrate lyase alpha chain; Escherichia coli K-12 ortholog: b0615; Escherichia coli O157:H7 ortholog: z0759.


ensembl_gene_id: c0706
symbol: citE
gene_biotype: protein_coding
description:
  Citrate lyase beta chain; Represents a citryl-ACP lyase; Belongs to the HpcH/HpaI aldolase family. Citrate lyase beta subunit subfamily.


ensembl_gene_id: c0709
symbol: citC
gene_biotype: protein_coding
description:
  [Citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.


ensembl_gene_id: c0710
symbol: citA
gene_biotype: protein_coding
description:
  Sensor kinase dpiB; Escherichia coli K-12 ortholog: b0619; Escherichia coli O157:H7 ortholog: z0764.


ensembl_gene_id: c0711
symbol: citB
gene_biotype: protein_coding
description:
  Transcriptional Regulatory protein dpiA; Member of the two-component regulatory system DpiA/DpiB, which is essential for expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. Could be involved in response to both the presence of citrate and external redox conditions (By similarity).


ensembl_gene_id: c0712
symbol: dcuC
gene_biotype: protein_coding
description:
  Anaerobic C4-dicarboxylate transporter dcuC; Responsible for the transport of C4-dicarboxylates during anaerobic growth; Belongs to the DcuC/DcuD transporter (TC 2.A.61) family.


ensembl_gene_id: c0713
symbol: crcA
gene_biotype: protein_coding
description:
  CrcA protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.


ensembl_gene_id: c0714
symbol: cspE
gene_biotype: protein_coding
description:
  Cold shock-like protein cspE; CSP-E; Escherichia coli K-12 ortholog: b0623; Escherichia coli O157:H7 ortholog: z0769.


ensembl_gene_id: c0715
symbol: crcB
gene_biotype: protein_coding
description:
  Protein crcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: c0717
symbol: ybeC
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein tatE; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatE shares overlapping functions with TatA; Belongs to the TatA/E family. TatE subfamily.


ensembl_gene_id: c0718
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: c0719
symbol: c0719
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Residues 61 to 111 of 114 are 98.00 pct identical to residues 72 to 124 of 321 from MG1655 : b0629.


ensembl_gene_id: c0720
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: c0721
symbol: ybeD
gene_biotype: protein_coding
description:
  Hypothetical protein ybeD; Escherichia coli K-12 ortholog: b0631; Escherichia coli O157:H7 ortholog: z0776; Belongs to the UPF0250 family.


ensembl_gene_id: c0722
symbol: dacA
gene_biotype: protein_coding
description:
  Penicillin-binding protein 5 precursor; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Belongs to the peptidase S11 family.


ensembl_gene_id: c0724
symbol: rlpA
gene_biotype: protein_coding
description:
  Rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: c0725
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: c0726
symbol: mrdA
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.


ensembl_gene_id: c0727
symbol: ybeA
gene_biotype: protein_coding
description:
  Hypothetical protein ybeA; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: c0728
symbol: ybeB
gene_biotype: protein_coding
description:
  Hypothetical protein ybeB; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: c0729
symbol: phpB
gene_biotype: protein_coding
description:
  Alpha-ribazole-5'-phosphate phosphatase; Escherichia coli K-12 ortholog: b0638; Escherichia coli O157:H7 ortholog: z0785; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: c0730
symbol: ybeN
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: c0731
symbol: holA
gene_biotype: protein_coding
description:
  DNA polymerase III, delta subunit; Escherichia coli K-12 ortholog: b0640; Escherichia coli O157:H7 ortholog: z0787.


ensembl_gene_id: c0732
symbol: rlpB
gene_biotype: protein_coding
description:
  Rare lipoprotein B precursor; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.


ensembl_gene_id: c0733
symbol: leuS
gene_biotype: protein_coding
description:
  Leucyl-tRNA synthetase; Escherichia coli K-12 ortholog: b0642; Escherichia coli O157:H7 ortholog: z0789; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: c0734
symbol: ybeL
gene_biotype: protein_coding
description:
  Hypothetical protein ybeL; Escherichia coli K-12 ortholog: b0643; Escherichia coli O157:H7 ortholog: z0790.


ensembl_gene_id: c0735
symbol: ybeK
gene_biotype: protein_coding
description:
  Hypothetical protein ybeK; Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively.


ensembl_gene_id: c0736
symbol: gltL
gene_biotype: protein_coding
description:
  Glutamate/aspartate transport ATP-binding protein gltL; Escherichia coli K-12 ortholog: b0652; Escherichia coli O157:H7 ortholog: z0802.


ensembl_gene_id: c0737
symbol: gltK
gene_biotype: protein_coding
description:
  Glutamate/aspartate transport system permease protein gltK; Part of the ABC transporter complex GltIJKL involved in glutamate and aspartate uptake. Probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: c0738
symbol: gltJ
gene_biotype: protein_coding
description:
  Glutamate/aspartate transport system permease protein gltJ; Part of the ABC transporter complex GltIJKL involved in glutamate and aspartate uptake. Probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: c0739
symbol: ybeJ
gene_biotype: protein_coding
description:
  Glutamate/aspartate Periplasmic binding protein precursor; Escherichia coli K-12 ortholog: b0655; Escherichia coli O157:H7 ortholog: z0805.


ensembl_gene_id: c0741
symbol: c0741
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 15 to 253 of 625 are 35.54 pct identical to residues 22 to 275 of 281 from GenPept.129 : >gb|AAA61597.1| (L28755) 2'-N-acetyltransferase [Providencia stuartii].


ensembl_gene_id: c0742
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation. Utilizes a two-step reaction via a ping-pong mechanism. Lnt undergoes covalent modification in the presence of phospholipids, resulting in a thioester acyl-enzyme intermediate. It then transfers the acyl chain to the amine group of the N-terminal diacylglyceryl- modified cysteine of apolipoprotein, leading to the formation of mature triacylated lipoprotein; Belongs to the CN hydrolase family. Apolipoprotein N- acyltra [...]


ensembl_gene_id: c0743
symbol: ybeX
gene_biotype: protein_coding
description:
  Magnesium and cobalt efflux protein corC; Plays a role in the transport of magnesium and cobalt ions.


ensembl_gene_id: c0744
symbol: ybeY
gene_biotype: protein_coding
description:
  Hypothetical protein ybeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: c0747
symbol: yleA
gene_biotype: protein_coding
description:
  Hypothetical protein yleA; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: c0748
symbol: yleB
gene_biotype: protein_coding
description:
  2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Escherichia coli K-12 ortholog: b0662; Escherichia coli O157:H7 ortholog: z0811.


ensembl_gene_id: c0749
symbol: asnB
gene_biotype: protein_coding
description:
  Asparagine synthetase B (glutamine-hydrolyzing); Escherichia coli K-12 ortholog: b0674; Escherichia coli O157:H7 ortholog: z0821.


ensembl_gene_id: c0751
symbol: nagC
gene_biotype: protein_coding
description:
  N-acetylglucosamine repressor; Acts as a repressor of the nagEBACD operon and acts both as an activator and a repressor for the transcription of the glmSU operon.


ensembl_gene_id: c0752
symbol: nagA
gene_biotype: protein_coding
description:
  N-acetylglucosamine-6-phosphate deacetylase; Escherichia coli K-12 ortholog: b0677; Escherichia coli O157:H7 ortholog: z0824.


ensembl_gene_id: c0753
symbol: nagB
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.


ensembl_gene_id: c0755
symbol: nagE
gene_biotype: protein_coding
description:
  PTS system, N-acetylglucosamine-specific IIABC component; EIIABC-NAG; Escherichia coli K-12 ortholog: b0679; Escherichia coli O157:H7 ortholog: z0826.


ensembl_gene_id: c0757
symbol: c0757
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 425 of 426 are 26.49 pct identical to residues 27 to 447 of 450 from GenPept.129 : >emb|CAD07871.1| (AL627278) possible membrane transport protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0758
symbol: c0758
gene_biotype: protein_coding
description:
  Hypthetical protein; Residues 1 to 149 of 156 are 36.00 pct identical to residues 1 to 147 of 150 from GenPept.129 : >emb|CAD06928.1| (AL627283) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0759
symbol: c0759
gene_biotype: protein_coding
description:
  Hypthetical protein; Residues 3 to 385 of 389 are 46.78 pct identical to residues 6 to 391 of 396 from GenPept.129 : >gb|AAL45764.1| (AE008932) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)].


ensembl_gene_id: c0760
symbol: c0760
gene_biotype: protein_coding
description:
  Hypothetical protein ygdQ; Escherichia coli K-12 ortholog: b2832; Escherichia coli O157:H7 ortholog: z4150.


ensembl_gene_id: c0761
symbol: c0761
gene_biotype: protein_coding
description:
  Putative dihydrodipicolinate synthase; Residues 11 to 294 of 295 are 43.50 pct identical to residues 8 to 292 of 297 from GenPept.129 : >gb|AAL45759.1| (AE008931) dihydrodipicolinate synthase [Agrobacterium tumefaciens str. C58 (U. Washington)]; Belongs to the DapA family.


ensembl_gene_id: c0762
symbol: c0762
gene_biotype: protein_coding
description:
  Putative alcohol dehydrogenase; Residues 11 to 378 of 385 are 33.87 pct identical to residues 33 to 399 of 399 from GenPept.129 : >gb|AAL13074.2| (AY052389) AttL [Agrobacterium tumefaciens].


ensembl_gene_id: c0763
symbol: c0763
gene_biotype: protein_coding
description:
  Putative inner membrane protein; Residues 11 to 372 of 376 are 40.21 pct identical to residues 41 to 418 of 423 from GenPept.129 : >gb|AAL19126.1| (AE008701) putative inner membrane protein [Salmonella typhimurium LT2].


ensembl_gene_id: c0764
symbol: c0764
gene_biotype: protein_coding
description:
  Putative pyridoxine phosphate biosynthetic protein; Residues 5 to 326 of 328 are 76.08 pct identical to residues 6 to 327 of 327 from GenPept.129 : >gb|AAL19127.1| (AE008701) pyridoxine phosphate biosynthetic protein [Salmonella typhimurium LT2]; Belongs to the PdxA family.


ensembl_gene_id: c0765
symbol: c0765
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; LysR family; Residues 1 to 234 of 253 are 70.08 pct identical to residues 1 to 234 of 255 from GenPept.129 : >gb|AAL19128.1| (AE008701) putative transcriptional regulator (LysR family) [Salmonella typhimurium LT2].


ensembl_gene_id: c0766
symbol: glnS
gene_biotype: protein_coding
description:
  Glutaminyl-tRNA synthetase; Escherichia coli K-12 ortholog: b0680; Escherichia coli O157:H7 ortholog: z0827.


ensembl_gene_id: c0767
symbol: c0767
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 152 of 152 are 94.07 pct identical to residues 1 to 152 of 152 from SwissProt.40 : >sp|Q57334|T200_SALTY Transposase for insertion sequence element IS200.


ensembl_gene_id: c0768
symbol: ybfM
gene_biotype: protein_coding
description:
  Hypothetical protein ybfM; Escherichia coli K-12 ortholog: b0681; Escherichia coli O157:H7 ortholog: z0829.


ensembl_gene_id: c0769
symbol: ybfN
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein ybfN precursor; Escherichia coli K-12 ortholog: b0682; Escherichia coli O157:H7 ortholog: z0830.


ensembl_gene_id: c0770
symbol: fur
gene_biotype: protein_coding
description:
  Ferric uptake regulation protein; Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes. Regulates the expression of several outer-membrane proteins including the iron transport operon (By similarity).


ensembl_gene_id: c0771
symbol: fldA
gene_biotype: protein_coding
description:
  Flavodoxin 1; Low-potential electron donor to a number of redox enzymes (Potential). Involved in the reactivation of inactive cob(II)alamin in methionine synthase (By similarity); Belongs to the flavodoxin family.


ensembl_gene_id: c0772
symbol: ybfE
gene_biotype: protein_coding
description:
  Hypothetical protein ybfE; Escherichia coli K-12 ortholog: b0685; Escherichia coli O157:H7 ortholog: z0834.


ensembl_gene_id: c0773
symbol: ybfF
gene_biotype: protein_coding
description:
  Putative esterase/lipase ybfF; Escherichia coli K-12 ortholog: b0686; Escherichia coli O157:H7 ortholog: z0835.


ensembl_gene_id: c0774
symbol: seqA
gene_biotype: protein_coding
description:
  SeqA protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.


ensembl_gene_id: c0775
symbol: pgm
gene_biotype: protein_coding
description:
  Phosphoglucomutase; Escherichia coli K-12 ortholog: b0688; Escherichia coli O157:H7 ortholog: z0837.


ensembl_gene_id: c0776
symbol: potE
gene_biotype: protein_coding
description:
  Putrescine-ornithine antiporter; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family.


ensembl_gene_id: c0777
symbol: speF
gene_biotype: protein_coding
description:
  Ornithine decarboxylase, inducible; Escherichia coli K-12 ortholog: b0693; Escherichia coli O157:H7 ortholog: z0839.


ensembl_gene_id: c0779
symbol: kdpE
gene_biotype: protein_coding
description:
  KDP operon transcriptional Regulatory protein kdpE; Escherichia coli K-12 ortholog: b0694; Escherichia coli O157:H7 ortholog: z0841.


ensembl_gene_id: c0780
symbol: kdpD
gene_biotype: protein_coding
description:
  Sensor protein kdpD; Escherichia coli K-12 ortholog: b0695; Escherichia coli O157:H7 ortholog: z0842.


ensembl_gene_id: c0781
symbol: kdpC
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: c0782
symbol: kdpB
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase B chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: c0783
symbol: kdpA
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase A chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: c0784
symbol: c0784
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 39 to 67 of 67 are 93.10 pct identical to residues 1 to 29 of 29 from GenPept.129 : >dbj|BAA35357.1| (D90709) KdpF protein. [Escherichia coli].


ensembl_gene_id: c0785
symbol: ybfA
gene_biotype: protein_coding
description:
  Hypothetical protein ybfA precursor; Escherichia coli K-12 ortholog: b0699; Escherichia coli O157:H7 ortholog: z0846.


ensembl_gene_id: c0786
symbol: ybgA
gene_biotype: protein_coding
description:
  Hypothetical protein ybgA; TKP; Escherichia coli K-12 ortholog: b0707; Escherichia coli O157:H7 ortholog: z0858.


ensembl_gene_id: c0787
symbol: phrB
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photolyase; Escherichia coli K-12 ortholog: b0708; Escherichia coli O157:H7 ortholog: z0859; Belongs to the DNA photolyase family.


ensembl_gene_id: c0788
symbol: ybgH
gene_biotype: protein_coding
description:
  Hypothetical transporter ybgH; Probable proton-dependent permease that transports dipeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily.


ensembl_gene_id: c0789
symbol: ybgI
gene_biotype: protein_coding
description:
  Hypothetical protein ybgI; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. Belongs to the GTP cyclohydrolase I type 2/NIF3 family.


ensembl_gene_id: c0790
symbol: ybgJ
gene_biotype: protein_coding
description:
  Hypothetical protein ybgJ; Escherichia coli K-12 ortholog: b0711; Escherichia coli O157:H7 ortholog: z0862.


ensembl_gene_id: c0791
symbol: ybgK
gene_biotype: protein_coding
description:
  Hypothetical protein ybgK; Escherichia coli K-12 ortholog: b0712; Escherichia coli O157:H7 ortholog: z0863.


ensembl_gene_id: c0792
symbol: ybgL
gene_biotype: protein_coding
description:
  Protein ybgL; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: c0793
symbol: nei
gene_biotype: protein_coding
description:
  Endonuclease VIII; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: c0794
symbol: abrB
gene_biotype: protein_coding
description:
  AbrB protein; AidB regulator; Escherichia coli K-12 ortholog: b0715; Escherichia coli O157:H7 ortholog: z0867.


ensembl_gene_id: c0795
symbol: c0795
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 80 of 80 are 94.99 pct identical to residues 239 to 318 of 362 from MG1655 : b0716.


ensembl_gene_id: c0796
symbol: gltA
gene_biotype: protein_coding
description:
  Citrate synthase; Escherichia coli K-12 ortholog: b0720; Escherichia coli O157:H7 ortholog: z0873; Belongs to the citrate synthase family.


ensembl_gene_id: c0797
symbol: c0797
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 27 to 63 of 63 are 67.56 pct identical to residues 2 to 38 of 81 from GenPept.129 : >emb|CAD05193.1| (AL627268) hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0798
symbol: sdhC
gene_biotype: protein_coding
description:
  Succinate dehydrogenase cytochrome b-556 subunit; Escherichia coli K-12 ortholog: b0721; Escherichia coli O157:H7 ortholog: z0875.


ensembl_gene_id: c0800
symbol: sdhD
gene_biotype: protein_coding
description:
  Succinate dehydrogenase hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).


ensembl_gene_id: c0801
symbol: sdhA
gene_biotype: protein_coding
description:
  Succinate dehydrogenase flavoprotein subunit; Two distinct, membrane-bound, FAD-containing enzymes are responsible for the catalysis of fumarate and succinate interconversion; the fumarate reductase is used in anaerobic growth, and the succinate dehydrogenase is used in aerobic growth. Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: c0802
symbol: sdhB
gene_biotype: protein_coding
description:
  Succinate dehydrogenase iron-sulfur protein; Escherichia coli K-12 ortholog: b0724; Escherichia coli O157:H7 ortholog: z0878; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: c0803
symbol: sucA
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase E1 component; E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: c0804
symbol: sucB
gene_biotype: protein_coding
description:
  Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: c0805
symbol: sucC
gene_biotype: protein_coding
description:
  Succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: c0806
symbol: sucD
gene_biotype: protein_coding
description:
  Succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: c0807
symbol: c0807
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 16 to 223 of 319 are 32.74 pct identical to residues 1594 to 1812 of 1819 from GenPept.129 : >gb|AAK79055.1|AE007624_2 (AE007624) Uncharacterized protein, probably surface-located [Clostridium acetobutylicum].


ensembl_gene_id: c0811
symbol: cydA
gene_biotype: protein_coding
description:
  Cytochrome D ubiquinol oxidase subunit I; A terminal oxidase that produces a proton motive force by the vectorial transfer of protons across the inner membrane. It is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at low aeration. Generates a proton motive force using protons and electrons from opposite sides of the membrane to generate H(2)O, transferring 1 proton/electron. Belongs to the cytochrome ubiquinol oxidase subunit 1 family.


ensembl_gene_id: c0812
symbol: cydB
gene_biotype: protein_coding
description:
  Cytochrome D ubiquinol oxidase subunit II; A terminal oxidase that produces a proton motive force by the vectorial transfer of protons across the inner membrane. It is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at low aeration. Generates a proton motive force using protons and electrons from opposite sides of the membrane to generate H(2)O, transferring 1 proton/electron.


ensembl_gene_id: c0815
symbol: ybgC
gene_biotype: protein_coding
description:
  Protein ybgC; Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond (By similarity).


ensembl_gene_id: c0816
symbol: tolQ
gene_biotype: protein_coding
description:
  TolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. Required, with TolR, for the proton motive force-dependent activation of TolA and for TolA-Pal interaction.


ensembl_gene_id: c0817
symbol: tolR
gene_biotype: protein_coding
description:
  TolR protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. Required, with TolQ, for the proton motive force-dependent activation of TolA and for TolA-Pal interaction.


ensembl_gene_id: c0819
symbol: tolB
gene_biotype: protein_coding
description:
  TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. TolB occupies a key intermediary position in the Tol-Pal system because it communicates directly with both membrane-embedded components, Pal in the outer membrane and TolA in the inner membrane.


ensembl_gene_id: c0821
symbol: pal
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: c0822
symbol: ybgF
gene_biotype: protein_coding
description:
  Hypothetical protein ybgF precursor; Escherichia coli K-12 ortholog: b0742; Escherichia coli O157:H7 ortholog: z0910.


ensembl_gene_id: c0823
symbol: c0823
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 5 to 67 of 67 are 100.00 pct identical to residues 201 to 263 of 263 from MG1655 : b0742.


ensembl_gene_id: c0825
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily.


ensembl_gene_id: c0827
symbol: c0827
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 10 to 132 of 132 are 98.37 pct identical to residues 191 to 313 of 313 from MG1655 : b0752.


ensembl_gene_id: c0829
symbol: ybgS
gene_biotype: protein_coding
description:
  Hypothetical protein ybgS precursor; Escherichia coli K-12 ortholog: b0753; Escherichia coli O157:H7 ortholog: z0923.


ensembl_gene_id: c0830
symbol: aroG
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: c0831
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase 1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: c0833
symbol: galK
gene_biotype: protein_coding
description:
  Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: c0834
symbol: galT
gene_biotype: protein_coding
description:
  Galactose-1-phosphate uridylyltransferase; Escherichia coli K-12 ortholog: b0758; Escherichia coli O157:H7 ortholog: z0928; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.


ensembl_gene_id: c0835
symbol: galE
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Escherichia coli K-12 ortholog: b0759; Escherichia coli O157:H7 ortholog: z0929; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: c0836
symbol: modF
gene_biotype: protein_coding
description:
  Putative molybdenum transport ATP-binding protein modF; Photorepair protein phrA; Escherichia coli K-12 ortholog: b0760; Escherichia coli O157:H7 ortholog: z0930.


ensembl_gene_id: c0837
symbol: modE
gene_biotype: protein_coding
description:
  Transcriptional regulator modE; Escherichia coli K-12 ortholog: b0761; Escherichia coli O157:H7 ortholog: z0931.


ensembl_gene_id: c0838
symbol: ybhT
gene_biotype: protein_coding
description:
  Hypothetical protein ybhT precursor; AcrA-AcrB-AcrZ-TolC is a drug efflux protein complex with a broad substrate specificity. This protein binds to AcrB and is required for efflux of some but not all substrates, suggesting it may influence the specificity of drug export.


ensembl_gene_id: c0840
symbol: modA
gene_biotype: protein_coding
description:
  Molybdate-binding periplasmic protein precursor; Escherichia coli K-12 ortholog: b0763; Escherichia coli O157:H7 ortholog: z0933.


ensembl_gene_id: c0841
symbol: modB
gene_biotype: protein_coding
description:
  Molybdenum transport system permease protein modB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: c0842
symbol: modC
gene_biotype: protein_coding
description:
  Molybdenum transport ATP-binding protein modC; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.


ensembl_gene_id: c0843
symbol: ybhA
gene_biotype: protein_coding
description:
  Hypothetical protein ybhA; Escherichia coli K-12 ortholog: b0766; Escherichia coli O157:H7 ortholog: z0936.


ensembl_gene_id: c0844
symbol: ybhE
gene_biotype: protein_coding
description:
  Hypothetical protein ybhE; Catalyzes the hydrolysis of 6-phosphogluconolactone to 6- phosphogluconate.


ensembl_gene_id: c0845
symbol: ybhD
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ybhD; Escherichia coli K-12 ortholog: b0768; Escherichia coli O157:H7 ortholog: z0939; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c0846
symbol: ybhH
gene_biotype: protein_coding
description:
  Hypothetical protein ybhH; Escherichia coli K-12 ortholog: b0769; Escherichia coli O157:H7 ortholog: z0940; Belongs to the PrpF family.


ensembl_gene_id: c0847
symbol: ybhI
gene_biotype: protein_coding
description:
  Hypothetical protein ybhI; Escherichia coli K-12 ortholog: b0770; Escherichia coli O157:H7 ortholog: z0941.


ensembl_gene_id: c0848
symbol: ybhJ
gene_biotype: protein_coding
description:
  Hypothetical protein ybhJ; Escherichia coli K-12 ortholog: b0771; Escherichia coli O157:H7 ortholog: z0942.


ensembl_gene_id: c0849
symbol: ybhC
gene_biotype: protein_coding
description:
  Putative lipoprotein ybHC precursor; Escherichia coli K-12 ortholog: b0772; Escherichia coli O157:H7 ortholog: z0943.


ensembl_gene_id: c0851
symbol: gipA
gene_biotype: protein_coding
description:
  Peyer's patch-specific virulence factor GipA; Residues 1 to 373 of 376 are 54.52 pct identical to residues 5 to 379 of 402 from SwissProt.40 : >sp|P54992|YSNA_STRPR Hypothetical 45.4 kDa protein in SNAA-SNAB intergenic region (ORF401).


ensembl_gene_id: c0853
symbol: bioA
gene_biotype: protein_coding
description:
  Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.


ensembl_gene_id: c0855
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: c0856
symbol: bioF
gene_biotype: protein_coding
description:
  8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.


ensembl_gene_id: c0857
symbol: bioC
gene_biotype: protein_coding
description:
  Biotin synthesis protein bioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.


ensembl_gene_id: c0858
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. Belongs to the dethiobiotin synthetase family.


ensembl_gene_id: c0860
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: c0861
symbol: ybhK
gene_biotype: protein_coding
description:
  Hypothetical protein ybhK; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: c0862
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: c0863
symbol: moaB
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: c0865
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: c0866
symbol: moaD
gene_biotype: protein_coding
description:
  Molybdopterin converting factor subunit 1; MPT synthase subunit 1; Escherichia coli K-12 ortholog: b0784; Escherichia coli O157:H7 ortholog: z1003.


ensembl_gene_id: c0867
symbol: moaE
gene_biotype: protein_coding
description:
  Molybdopterin converting factor subunit 2; MPT synthase subunit 2; Escherichia coli K-12 ortholog: b0785; Escherichia coli O157:H7 ortholog: z1004.


ensembl_gene_id: c0868
symbol: ybhL
gene_biotype: protein_coding
description:
  Hypothetical protein ybhL; Escherichia coli K-12 ortholog: b0786; Escherichia coli O157:H7 ortholog: z1005.


ensembl_gene_id: c0869
symbol: c0869
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 6 to 43 of 43 are 94.73 pct identical to residues 8 to 45 of 45 from GenPept.129 : >dbj|BAA35445.1| (D90716) ORF_ID:o203#8 [Escherichia coli].


ensembl_gene_id: c0870
symbol: ybhM
gene_biotype: protein_coding
description:
  Hypothetical protein ybhM; Escherichia coli K-12 ortholog: b0787; Escherichia coli O157:H7 ortholog: z1006.


ensembl_gene_id: c0871
symbol: ybhN
gene_biotype: protein_coding
description:
  Hypothetical protein ybhN; Escherichia coli K-12 ortholog: b0788; Escherichia coli O157:H7 ortholog: z1007.


ensembl_gene_id: c0872
symbol: ybhO
gene_biotype: protein_coding
description:
  Hypothetical protein ybhO; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: c0873
symbol: ybhP
gene_biotype: protein_coding
description:
  Hypothetical protein ybhP; Escherichia coli K-12 ortholog: b0790; Escherichia coli O157:H7 ortholog: z1009.


ensembl_gene_id: c0874
symbol: ybhQ
gene_biotype: protein_coding
description:
  Hypothetical protein ybhQ; Escherichia coli K-12 ortholog: b0791; Escherichia coli O157:H7 ortholog: z1010.


ensembl_gene_id: c0875
symbol: ybhR
gene_biotype: protein_coding
description:
  Hypothetical protein ybhR; Escherichia coli K-12 ortholog: b0792; Escherichia coli O157:H7 ortholog: z1012.


ensembl_gene_id: c0876
symbol: ybhS
gene_biotype: protein_coding
description:
  Hypothetical protein ybhS; Part of the ABC transporter complex YbhFSR that could be involved in efflux of cefoperazone. Probably involved in the translocation of the substrate across the membrane.


ensembl_gene_id: c0877
symbol: ybhF
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein ybhF; Escherichia coli K-12 ortholog: b0794; Escherichia coli O157:H7 ortholog: z1014.


ensembl_gene_id: c0878
symbol: ybhG
gene_biotype: protein_coding
description:
  Hypothetical membrane protein ybhG; Escherichia coli K-12 ortholog: b0795; Escherichia coli O157:H7 ortholog: z1015.


ensembl_gene_id: c0879
symbol: ybiH
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ybiH; Escherichia coli K-12 ortholog: b0796; Escherichia coli O157:H7 ortholog: z1016.


ensembl_gene_id: c0880
symbol: rhlE
gene_biotype: protein_coding
description:
  Putative ATP-dependent RNA helicase rhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.


ensembl_gene_id: c0882
symbol: c0882
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 32 to 101 of 101 are 80.00 pct identical to residues 91 to 160 of 160 from MG1655 : b0798.


ensembl_gene_id: c0884
symbol: ybiB
gene_biotype: protein_coding
description:
  Hypothetical protein ybiB; Escherichia coli K-12 ortholog: b0800; Escherichia coli O157:H7 ortholog: z1021.


ensembl_gene_id: c0885
symbol: ybiC
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ybiC; Escherichia coli K-12 ortholog: b0801; Escherichia coli O157:H7 ortholog: z1022; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: c0886
symbol: ybiJ
gene_biotype: protein_coding
description:
  Hypothetical protein ybiJ precursor; Escherichia coli K-12 ortholog: b0802; Escherichia coli O157:H7 ortholog: z1023.


ensembl_gene_id: c0887
symbol: c0887
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 121 of 121 are 90.90 pct identical to residues 1 to 121 of 125 from SwissProt.40 : >sp|P30179|YBID_ECOLI HYPOTHETICAL 14.1 KD PROTEIN IN DING/RARB 3'REGION (F125).


ensembl_gene_id: c0888
symbol: c0888
gene_biotype: protein_coding
description:
  Hypothetical protein ybiI; Escherichia coli K-12 ortholog: b0803; Escherichia coli O157:H7 ortholog: z1024.


ensembl_gene_id: c0889
symbol: ybiX
gene_biotype: protein_coding
description:
  Hypothetical protein ybiX; Escherichia coli K-12 ortholog: b0804; Escherichia coli O157:H7 ortholog: z1025.


ensembl_gene_id: c0890
symbol: ybiL
gene_biotype: protein_coding
description:
  Probable tonB-dependent receptor ybiL precursor; Involved in the active transport across the outer membrane of iron complexed with catecholate siderophores such as dihydroxybenzoylserine and dihydroxybenzoate. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB. Can also transport catechol-substituted cephalosporins. Receptor for microcins M, H47 and E492 (By similarity).


ensembl_gene_id: c0891
symbol: ybiM
gene_biotype: protein_coding
description:
  Hypothetical protein ybiM; Escherichia coli K-12 ortholog: b0806; Escherichia coli O157:H7 ortholog: z1027.


ensembl_gene_id: c0893
symbol: ybiO
gene_biotype: protein_coding
description:
  Hypothetical protein ybiO; Escherichia coli K-12 ortholog: b0808; Escherichia coli O157:H7 ortholog: z1030.


ensembl_gene_id: c0894
symbol: glnQ
gene_biotype: protein_coding
description:
  Glutamine transport ATP-binding protein glnQ; Escherichia coli K-12 ortholog: b0809; Escherichia coli O157:H7 ortholog: z1031.


ensembl_gene_id: c0895
symbol: glnP
gene_biotype: protein_coding
description:
  Glutamine transport system permease protein glnP; Part of the binding-protein-dependent transport system for glutamine; probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: c0898
symbol: dps
gene_biotype: protein_coding
description:
  DNA protection during starvation protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Dps also protects the cell from UV and gamma irradiation, ir [...]


ensembl_gene_id: c0899
symbol: ybiF
gene_biotype: protein_coding
description:
  Hypothetical transport protein ybiF; Involved in the efflux of threonine and homoserine. Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (DME) (TC 2.A.7.3) family.


ensembl_gene_id: c0900
symbol: ompX
gene_biotype: protein_coding
description:
  Outer membrane protein X precursor; Escherichia coli K-12 ortholog: b0814; Escherichia coli O157:H7 ortholog: z1036.


ensembl_gene_id: c0901
symbol: ybiP
gene_biotype: protein_coding
description:
  Hypothetical protein ybiP; Escherichia coli K-12 ortholog: b0815; Escherichia coli O157:H7 ortholog: z1037.


ensembl_gene_id: c0903
symbol: mntR
gene_biotype: protein_coding
description:
  Transcriptional regulator mntR; In the presence of manganese, represses expression of mntH and mntS. Up-regulates expression of mntP (By similarity). Belongs to the DtxR/MntR family.


ensembl_gene_id: c0904
symbol: ybiR
gene_biotype: protein_coding
description:
  Hypothetical protein ybiR; Escherichia coli K-12 ortholog: b0818; Escherichia coli O157:H7 ortholog: z1040.


ensembl_gene_id: c0905
symbol: ybiS
gene_biotype: protein_coding
description:
  Protein ybiS precursor; Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso- diaminopimelyl-L-Lys- bond on the terminal residue of Lpp.


ensembl_gene_id: c0906
symbol: ybiT
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein ybiT; Escherichia coli K-12 ortholog: b0820; Escherichia coli O157:H7 ortholog: z1042.


ensembl_gene_id: c0907
symbol: ybiV
gene_biotype: protein_coding
description:
  Hypothetical protein ybiV; Escherichia coli K-12 ortholog: b0822; Escherichia coli O157:H7 ortholog: z1044.


ensembl_gene_id: c0908
symbol: ybiW
gene_biotype: protein_coding
description:
  Putative formate acetyltransferase 3; Escherichia coli K-12 ortholog: b0823; Escherichia coli O157:H7 ortholog: z1045.


ensembl_gene_id: c0909
symbol: c0909
gene_biotype: protein_coding
description:
  Putative pyruvate formate-lyase 3 activating enzyme; Escherichia coli K-12 ortholog: b0824; Escherichia coli O157:H7 ortholog: z1047.


ensembl_gene_id: c0910
symbol: mipB
gene_biotype: protein_coding
description:
  Fructose-6-phosphate aldolase 1; Catalyzes the reversible formation of fructose 6-phosphate from dihydroxyacetone and D-glyceraldehyde 3-phosphate via an aldolization reaction; Belongs to the transaldolase family. Type 3A subfamily.


ensembl_gene_id: c0911
symbol: moeB
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis protein moeB; Escherichia coli K-12 ortholog: b0826; Escherichia coli O157:H7 ortholog: z1049.


ensembl_gene_id: c0912
symbol: moeA
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis protein moeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: c0913
symbol: ybiK
gene_biotype: protein_coding
description:
  Putative L-asparaginase precursor; Escherichia coli K-12 ortholog: b0828; Escherichia coli O157:H7 ortholog: z1052.


ensembl_gene_id: c0914
symbol: yliA
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein yliA; Part of the ABC transporter complex GsiABCD involved in glutathione import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Glutathione importer (TC 3.A.1.5.11) family.


ensembl_gene_id: c0915
symbol: gsiB
gene_biotype: protein_coding
description:
  Putative binding protein yliB precursor; Part of the ABC transporter complex GsiABCD involved in glutathione import. Binds glutathione.


ensembl_gene_id: c0916
symbol: yliC
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein yliC; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: c0917
symbol: yliD
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein yliD; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: c0918
symbol: yliE
gene_biotype: protein_coding
description:
  Hypothetical protein yliE; Escherichia coli K-12 ortholog: b0833; Escherichia coli O157:H7 ortholog: z1057.


ensembl_gene_id: c0919
symbol: yliF
gene_biotype: protein_coding
description:
  Hypothetical membrane protein yliF; Escherichia coli K-12 ortholog: b0834; Escherichia coli O157:H7 ortholog: z1058.


ensembl_gene_id: c0920
symbol: yliG
gene_biotype: protein_coding
description:
  Hypothetical protein yliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: c0921
symbol: yliH
gene_biotype: protein_coding
description:
  Hypothetical protein yliH; Escherichia coli K-12 ortholog: b0836; Escherichia coli O157:H7 ortholog: z1062.


ensembl_gene_id: c0922
symbol: yliI
gene_biotype: protein_coding
description:
  Hypothetical protein yliI precursor; Escherichia coli K-12 ortholog: b0837; Escherichia coli O157:H7 ortholog: z1063.


ensembl_gene_id: c0923
symbol: yliJ
gene_biotype: protein_coding
description:
  Hypothetical GST-like protein yliJ; Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles; Belongs to the GST superfamily.


ensembl_gene_id: c0924
symbol: dacC
gene_biotype: protein_coding
description:
  Penicillin-binding protein 6 precursor; D-alanyl-D-alanine carboxypeptidase fraction C; Escherichia coli K-12 ortholog: b0839; Escherichia coli O157:H7 ortholog: z1066; Belongs to the peptidase S11 family.


ensembl_gene_id: c0925
symbol: deoR
gene_biotype: protein_coding
description:
  Deoxyribose operon repressor; This protein is one of the repressors that regulate the expression of deoCABD genes, which encode nucleotide and deoxy ribonucleotide catabolizing enzymes. It also negatively regulates the expression of nupG (a transport protein) and tsx (a pore-forming protein). The inducer is deoxyribose-5-phosphate (By similarity).


ensembl_gene_id: c0926
symbol: ybjG
gene_biotype: protein_coding
description:
  Hypothetical protein ybjG; Escherichia coli K-12 ortholog: b0841; Escherichia coli O157:H7 ortholog: z1068.


ensembl_gene_id: c0927
symbol: cmr
gene_biotype: protein_coding
description:
  Multidrug translocase mdfA; Efflux pump driven by the proton motive force. Confers resistance to a broad spectrum of chemically unrelated drugs (By similarity).


ensembl_gene_id: c0928
symbol: ybjH
gene_biotype: protein_coding
description:
  Hypothetical protein ybjH precursor; Escherichia coli K-12 ortholog: b0843; Escherichia coli O157:H7 ortholog: z1070.


ensembl_gene_id: c0930
symbol: ybjJ
gene_biotype: protein_coding
description:
  Hypothetical protein ybjJ; Escherichia coli K-12 ortholog: b0845; Escherichia coli O157:H7 ortholog: z1072.


ensembl_gene_id: c0931
symbol: ybjK
gene_biotype: protein_coding
description:
  Hypothetical protein ybjK; Escherichia coli K-12 ortholog: b0846; Escherichia coli O157:H7 ortholog: z1073.


ensembl_gene_id: c0934
symbol: c0934
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 114 to 307 of 308 are 47.42 pct identical to residues 5 to 198 of 198 from SwissProt.40 : >sp|P21323|YR7I_ECOLI HYPOTHETICAL 21.9 KD PROTEIN (ORFI) (RETRON EC67).


ensembl_gene_id: c0936
symbol: c0936
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 19 to 187 of 187 are 99.40 pct identical to residues 1 to 169 of 169 from SwissProt.40 : >sp|P21316|YR7B_ECOLI HYPOTHETICAL 18.1 KD PROTEIN (ORFB) (RETRON EC67).


ensembl_gene_id: c0937
symbol: c0937
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 60 of 76 are 81.99 pct identical to residues 1 to 50 of 75 from SwissProt.40 : >sp|P15236|VFIL_BP186 FIL PROTEIN.


ensembl_gene_id: c0938
symbol: c0938
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 67 of 67 are 100.00 pct identical to residues 47 to 113 of 113 from GenPept.129 : >emb|CAD09425.1| (AL627279) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0939
symbol: c0939
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 9 to 79 of 79 are 46.47 pct identical to residues 7 to 77 of 77 from SwissProt.40 : >sp|P21682|CP79_BP186 Hypothetical 8.8 kDa protein in GPA 5'region.


ensembl_gene_id: c0941
symbol: c0941
gene_biotype: protein_coding
description:
  DNA adenine methylase; Escherichia coli K-12 ortholog: b3387; Escherichia coli O157:H7 ortholog: z4740.


ensembl_gene_id: c0942
symbol: c0942
gene_biotype: protein_coding
description:
  Putative replication protein for prophage; Possible endonuclease which induces a single-strand cut and initiates DNA replication.


ensembl_gene_id: c0943
symbol: c0943
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 25 to 101 of 101 are 98.70 pct identical to residues 1 to 77 of 77 from SwissProt.40 : >sp|P21320|DIIR_ECOLI DinI-like protein in Retron EC67.


ensembl_gene_id: c0946
symbol: c0946
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 28 to 104 of 384 are 36.36 pct identical to residues 154 to 230 of 266 from GenPept.129 : >gb|AAB91582.2| (AF242881) ymh [Agrobacterium tumefaciens].


ensembl_gene_id: c0947
symbol: c0947
gene_biotype: protein_coding
description:
  Probable capsid portal protein; Residues 2 to 300 of 345 are 96.98 pct identical to residues 1 to 299 of 326 from SwissProt.40 : >sp|P21314|YR75_ECOLI HYPOTHETICAL 36.8 KD PROTEIN (ORF5) (RETRON EC67).


ensembl_gene_id: c0948
symbol: c0948
gene_biotype: protein_coding
description:
  Terminase, ATPase subunit; Residues 3 to 588 of 588 are 63.38 pct identical to residues 4 to 590 of 590 from SwissProt.40 : >sp|P25479|VPP_BPP2 TERMINASE, ATPASE SUBUNIT (GPP).


ensembl_gene_id: c0950
symbol: c0950
gene_biotype: protein_coding
description:
  Putative capsid scaffolding protein; Residues 3 to 275 of 275 are 46.42 pct identical to residues 6 to 284 of 284 from SwissProt.40 : >sp|P25478|VPO_BPP2 PRESUMED CAPSID SCAFFOLDING PROTEIN (GPO).


ensembl_gene_id: c0952
symbol: c0952
gene_biotype: protein_coding
description:
  Major capsid protein; Residues 1 to 352 of 352 are 58.82 pct identical to residues 1 to 357 of 357 from SwissProt.40 : >sp|P25477|VPN_BPP2 MAJOR CAPSID PROTEIN PRECURSOR (GPN).


ensembl_gene_id: c0953
symbol: c0953
gene_biotype: protein_coding
description:
  Terminase, endonuclease subunit; Residues 1 to 179 of 183 are 49.72 pct identical to residues 34 to 214 of 247 from SwissProt.40 : >sp|P25476|VPM_BPP2 TERMINASE, ENDONUCLEASE SUBUNIT (GPM).


ensembl_gene_id: c0954
symbol: c0954
gene_biotype: protein_coding
description:
  Putative capsid completion protein; Residues 1 to 175 of 175 are 98.28 pct identical to residues 1 to 175 of 175 from GenPept.129 : >emb|CAD09440.1| (AL627279) putative capsid completion protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0955
symbol: c0955
gene_biotype: protein_coding
description:
  Probable phage tail protein; Residues 1 to 67 of 67 are 61.19 pct identical to residues 1 to 67 of 67 from SwissProt.40 : >sp|P51772|VPX_BPP2 TAIL PROTEIN X (GPX).


ensembl_gene_id: c0956
symbol: c0956
gene_biotype: protein_coding
description:
  Possible secretory protein; Residues 1 to 71 of 71 are 98.59 pct identical to residues 1 to 71 of 71 from GenPept.129 : >emb|CAD09442.1| (AL627279) possible secretory protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0957
symbol: c0957
gene_biotype: protein_coding
description:
  Fels-2 prophage: probable prophage lysozyme; Residues 1 to 168 of 170 are 91.66 pct identical to residues 1 to 168 of 169 from GenPept.129 : >gb|AAL21602.1| (AE008823) Fels-2 prophage: probable prophage lysozyme [Salmonella typhimurium LT2].


ensembl_gene_id: c0958
symbol: c0958
gene_biotype: protein_coding
description:
  Putative membrane protein; Residues 15 to 139 of 139 are 98.40 pct identical to residues 1 to 125 of 125 from GenPept.129 : >emb|CAD09444.1| (AL627279) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0959
symbol: c0959
gene_biotype: protein_coding
description:
  Putative Regulatory protein; Residues 1 to 142 of 142 are 95.07 pct identical to residues 1 to 142 of 142 from GenPept.129 : >emb|CAD09445.1| (AL627279) putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0960
symbol: c0960
gene_biotype: protein_coding
description:
  Putative phage tail protein; Residues 10 to 142 of 150 are 50.37 pct identical to residues 3 to 135 of 155 from SwissProt.40 : >sp|P36933|VPR_BPP2 TAIL COMPLETION PROTEIN R (GPR).


ensembl_gene_id: c0962
symbol: c0962
gene_biotype: protein_coding
description:
  Putative phage tail protein; Residues 1 to 148 of 148 are 98.64 pct identical to residues 1 to 148 of 148 from GenPept.129 : >emb|CAD09447.1| (AL627279) putative phage tail protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0963
symbol: c0963
gene_biotype: protein_coding
description:
  Putative Phage baseplate assembly protein; Residues 3 to 192 of 192 are 40.19 pct identical to residues 5 to 211 of 211 from SwissProt.40 : >sp|P31340|VPV_BPP2 BASEPLATE ASSEMBLY PROTEIN V (GPV).


ensembl_gene_id: c0964
symbol: c0964
gene_biotype: protein_coding
description:
  Phage baseplate assembly protein; Residues 4 to 110 of 119 are 53.70 pct identical to residues 5 to 112 of 115 from SwissProt.40 : >sp|P51768|VPW_BPP2 BASEPLATE ASSEMBLY PROTEIN W (GPW).


ensembl_gene_id: c0965
symbol: c0965
gene_biotype: protein_coding
description:
  Phage baseplate assembly protein; Residues 1 to 302 of 302 are 65.89 pct identical to residues 1 to 302 of 302 from SwissProt.40 : >sp|P51767|VPJ_BPP2 BASEPLATE ASSEMBLY PROTEIN J (GPJ).


ensembl_gene_id: c0966
symbol: c0966
gene_biotype: protein_coding
description:
  Putative phage tail protein; Residues 4 to 173 of 201 are 57.05 pct identical to residues 6 to 175 of 176 from SwissProt.40 : >sp|P26701|VPI_BPP2 TAIL PROTEIN I (GPI).


ensembl_gene_id: c0968
symbol: c0968
gene_biotype: protein_coding
description:
  Probable variable tail fibre protein; Residues 1 to 353 of 479 are 96.03 pct identical to residues 1 to 353 of 504 from GenPept.129 : >emb|CAD09452.1| (AL627279) probable variable tail fibre protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0970
symbol: c0970
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 297 of 343 are 26.87 pct identical to residues 5 to 301 of 401 from GenPept.129 : >emb|CAC07472.1| (AX009415) product = eps11 [Lactobacillus helveticus].


ensembl_gene_id: c0974
symbol: c0974
gene_biotype: protein_coding
description:
  Putative phage tail protein; Residues 1 to 100 of 100 are 99.00 pct identical to residues 1 to 100 of 100 from GenPept.129 : >emb|CAD09459.1| (AL627279) putative phage tail protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0976
symbol: c0976
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 947 of 947 are 97.67 pct identical to residues 79 to 1025 of 1025 from GenPept.129 : >emb|CAD09461.1| (AL627279) hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c0978
symbol: c0978
gene_biotype: protein_coding
description:
  Putative regulator of late gene expression; Residues 15 to 364 of 366 are 56.52 pct identical to residues 15 to 381 of 389 from SwissProt.40 : >sp|P21679|VPD_BP186 LATE CONTROL GENE D PROTEIN (GPD).


ensembl_gene_id: c0980
symbol: ybjL
gene_biotype: protein_coding
description:
  Hypothetical membrane protein ybjL; Escherichia coli K-12 ortholog: b0847; Escherichia coli O157:H7 ortholog: z1074.


ensembl_gene_id: c0981
symbol: ybjM
gene_biotype: protein_coding
description:
  Hypothetical protein ybjM; Escherichia coli K-12 ortholog: b0848; Escherichia coli O157:H7 ortholog: z1075.


ensembl_gene_id: c0983
symbol: ybjC
gene_biotype: protein_coding
description:
  Hypothetical protein ybjC; Escherichia coli K-12 ortholog: b0850; Escherichia coli O157:H7 ortholog: z1077.


ensembl_gene_id: c0984
symbol: mdaA
gene_biotype: protein_coding
description:
  Oxygen-insensitive NADPH nitroreductase; Escherichia coli K-12 ortholog: b0851; Escherichia coli O157:H7 ortholog: z1078; Belongs to the flavin oxidoreductase frp family.


ensembl_gene_id: c0985
symbol: rimK
gene_biotype: protein_coding
description:
  Ribosomal protein S6 modification protein; Is an L-glutamate ligase that catalyzes the ATP-dependent post-translational addition of glutamate residues to the C-terminus of ribosomal protein S6 (RpsF). Is also able to catalyze the synthesis of poly-alpha-glutamate in vitro, via ATP hydrolysis from unprotected glutamate as substrate. The number of glutamate residues added to either RpsF or to poly-alpha-glutamate changes with pH. Belongs to the RimK family.


ensembl_gene_id: c0986
symbol: ybjN
gene_biotype: protein_coding
description:
  Hypothetical protein ybjN; Escherichia coli K-12 ortholog: b0853; Escherichia coli O157:H7 ortholog: z1080.


ensembl_gene_id: c0987
symbol: potF
gene_biotype: protein_coding
description:
  Putrescine-binding periplasmic protein precursor; Escherichia coli K-12 ortholog: b0854; Escherichia coli O157:H7 ortholog: z1081.


ensembl_gene_id: c0988
symbol: potG
gene_biotype: protein_coding
description:
  Putrescine transport ATP-binding protein potG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: c0989
symbol: potH
gene_biotype: protein_coding
description:
  Putrescine transport system permease protein potH; Escherichia coli K-12 ortholog: b0856; Escherichia coli O157:H7 ortholog: z1083.


ensembl_gene_id: c0990
symbol: potI
gene_biotype: protein_coding
description:
  Putrescine transport system permease protein potI; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: c0991
symbol: ybjO
gene_biotype: protein_coding
description:
  Hypothetical protein ybjO; Escherichia coli K-12 ortholog: b0858; Escherichia coli O157:H7 ortholog: z1085.


ensembl_gene_id: c0992
symbol: ybjF
gene_biotype: protein_coding
description:
  Hypothetical RNA methyltransferase ybjF; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.


ensembl_gene_id: c0993
symbol: artJ
gene_biotype: protein_coding
description:
  Arginine-binding periplasmic protein 2 precursor; Escherichia coli K-12 ortholog: b0860; Escherichia coli O157:H7 ortholog: z1090; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: c0994
symbol: artM
gene_biotype: protein_coding
description:
  Arginine transport system permease protein artM; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for the translocation of the substrate across the membrane (By similarity).


ensembl_gene_id: c0995
symbol: artQ
gene_biotype: protein_coding
description:
  Arginine transport system permease protein artQ; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for the translocation of the substrate across the membrane (By similarity).


ensembl_gene_id: c0996
symbol: artI
gene_biotype: protein_coding
description:
  Arginine-binding periplasmic protein 1 precursor; Escherichia coli K-12 ortholog: b0863; Escherichia coli O157:H7 ortholog: z1093; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: c0997
symbol: artP
gene_biotype: protein_coding
description:
  Arginine transport ATP-binding protein artP; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for energy coupling to the transport system (By similarity).


ensembl_gene_id: c0998
symbol: ybjP
gene_biotype: protein_coding
description:
  Putative lipoprotein ybjP precursor; Escherichia coli K-12 ortholog: b0865; Escherichia coli O157:H7 ortholog: z1095.


ensembl_gene_id: c0999
symbol: ybjQ
gene_biotype: protein_coding
description:
  Hypothetical protein ybjQ; Escherichia coli K-12 ortholog: b0866; Escherichia coli O157:H7 ortholog: z1099; Belongs to the UPF0145 family.


ensembl_gene_id: c1000
symbol: ybjR
gene_biotype: protein_coding
description:
  Probable N-acetylmuramoyl-L-alanine amidase ybjR; Escherichia coli K-12 ortholog: b0867; Escherichia coli O157:H7 ortholog: z1100.


ensembl_gene_id: c1001
symbol: c1001
gene_biotype: protein_coding
description:
  Hypothetical protein ybjS; Escherichia coli K-12 ortholog: b0868; Escherichia coli O157:H7 ortholog: z1102.


ensembl_gene_id: c1002
symbol: ybjT
gene_biotype: protein_coding
description:
  Hypothetical protein ybjT; Escherichia coli K-12 ortholog: b0869; Escherichia coli O157:H7 ortholog: z1103.


ensembl_gene_id: c1003
symbol: ybjU
gene_biotype: protein_coding
description:
  Low-specificity L-threonine aldolase; Escherichia coli K-12 ortholog: b0870; Escherichia coli O157:H7 ortholog: z1104.


ensembl_gene_id: c1004
symbol: poxB
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (cytochrome); Escherichia coli K-12 ortholog: b0871; Escherichia coli O157:H7 ortholog: z1105; Belongs to the TPP enzyme family.


ensembl_gene_id: c1005
symbol: c1005
gene_biotype: protein_coding
description:
  NADH oxidoreductase hcr; Escherichia coli K-12 ortholog: b0872; Escherichia coli O157:H7 ortholog: z1106.


ensembl_gene_id: c1007
symbol: ybjE
gene_biotype: protein_coding
description:
  Hypothetical protein ybjE; Escherichia coli K-12 ortholog: b0874; Escherichia coli O157:H7 ortholog: z1108.


ensembl_gene_id: c1009
symbol: aqpZ
gene_biotype: protein_coding
description:
  Aquaporin Z; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity (By similarity); Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: c1011
symbol: ybjD
gene_biotype: protein_coding
description:
  Hypothetical protein ybjD; Escherichia coli K-12 ortholog: b0876; Escherichia coli O157:H7 ortholog: z1110.


ensembl_gene_id: c1012
symbol: ybjX
gene_biotype: protein_coding
description:
  Hypothetical protein ybjX; Escherichia coli K-12 ortholog: b0877; Escherichia coli O157:H7 ortholog: z1112.


ensembl_gene_id: c1013
symbol: c1013
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 44 of 44 are 93.18 pct identical to residues 1 to 44 of 44 from GenPept.129 : >dbj|BAA35596.1| (D90725) ORF_ID:o213#2 [Escherichia coli].


ensembl_gene_id: c1014
symbol: macA
gene_biotype: protein_coding
description:
  Macrolide-specific efflux protein macA precursor; Escherichia coli K-12 ortholog: b0878; Escherichia coli O157:H7 ortholog: z1115; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: c1016
symbol: c1016
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 114 of 114 are 99.12 pct identical to residues 535 to 648 of 648 from GenPept.129 : >gb|AAG55261.1|AE005269_5 (AE005269) putative ATP-binding component of a transport system [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1017
symbol: cspD
gene_biotype: protein_coding
description:
  Cold shock-like protein cspD; Inhibits DNA replication at both initiation and elongation steps, most probably by binding to the opened, single-stranded regions at replication forks. Plays a regulatory role in chromosomal replication in nutrient-depleted cells (By similarity).


ensembl_gene_id: c1018
symbol: yljA
gene_biotype: protein_coding
description:
  Protein yljA; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: c1019
symbol: clpA
gene_biotype: protein_coding
description:
  ATP-dependent clp protease ATP-binding subunit clpA; ATP-dependent specificity component of the ClpAP protease. It directs the protease to specific substrates. It has unfoldase activity. The primary function of the ClpA-ClpP complex appears to be the degradation of unfolded or abnormal proteins (By similarity). Belongs to the ClpA/ClpB family.


ensembl_gene_id: c1021
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: c1022
symbol: aat
gene_biotype: protein_coding
description:
  Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: c1023
symbol: cydC
gene_biotype: protein_coding
description:
  Transport ATP-binding protein cydC; Escherichia coli K-12 ortholog: b0886; Escherichia coli O157:H7 ortholog: z1230.


ensembl_gene_id: c1024
symbol: cydD
gene_biotype: protein_coding
description:
  Transport ATP-binding protein cydD; Escherichia coli K-12 ortholog: b0887; Escherichia coli O157:H7 ortholog: z1231.


ensembl_gene_id: c1025
symbol: trxB
gene_biotype: protein_coding
description:
  Thioredoxin reductase; Escherichia coli K-12 ortholog: b0888; Escherichia coli O157:H7 ortholog: z1232.


ensembl_gene_id: c1026
symbol: lrp
gene_biotype: protein_coding
description:
  Leucine-responsive Regulatory protein; Mediates a global response to leucine. Exogenous leucine affects the expression of a number of different operons; lrp mediates this effect for at least some of these operons. For example it is regulator of the branched-chain amino acid transport genes (By similarity).


ensembl_gene_id: c1027
symbol: ftsK
gene_biotype: protein_coding
description:
  Cell division protein ftsK; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guide the direction of DNA  [...]


ensembl_gene_id: c1028
symbol: lolA
gene_biotype: protein_coding
description:
  Outer-membrane lipoproteins carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity).


ensembl_gene_id: c1029
symbol: ycaJ
gene_biotype: protein_coding
description:
  Hypothetical protein ycaJ; DNA-dependent ATPase that plays important roles in cellular responses to stalled DNA replication processes.


ensembl_gene_id: c1030
symbol: serS
gene_biotype: protein_coding
description:
  Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: c1031
symbol: dmsA
gene_biotype: protein_coding
description:
  Anaerobic dimethyl sulfoxide reductase chain A precursor; Escherichia coli K-12 ortholog: b0894; Escherichia coli O157:H7 ortholog: z1240; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: c1032
symbol: dmsB
gene_biotype: protein_coding
description:
  Anaerobic dimethyl sulfoxide reductase chain B; DMSO reductase iron-sulfur subunit; Escherichia coli K-12 ortholog: b0895; Escherichia coli O157:H7 ortholog: z1241.


ensembl_gene_id: c1033
symbol: dmsC
gene_biotype: protein_coding
description:
  Anaerobic dimethyl sulfoxide reductase chain C; DMSO reductase anchor subunit; Escherichia coli K-12 ortholog: b0896; Escherichia coli O157:H7 ortholog: z1242.


ensembl_gene_id: c1037
symbol: ycaD
gene_biotype: protein_coding
description:
  Hypothetical protein ycaD; ORF Y; Escherichia coli K-12 ortholog: b0898; Escherichia coli O157:H7 ortholog: z1244.


ensembl_gene_id: c1038
symbol: pflA
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase 1 activating enzyme; Activation of pyruvate formate-lyase 1 under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: c1042
symbol: focA_2
gene_biotype: protein_coding
description:
  Probable formate transporter 1; Involved in the bidirectional transport of formate. Belongs to the FNT transporter (TC 2.A.44) family.


ensembl_gene_id: c1043
symbol: ycaO
gene_biotype: protein_coding
description:
  Hypothetical protein ycaO; Escherichia coli K-12 ortholog: b0905; Escherichia coli O157:H7 ortholog: z1251.


ensembl_gene_id: c1044
symbol: ycaP
gene_biotype: protein_coding
description:
  Hypothetical protein ycaP; Escherichia coli K-12 ortholog: b0906; Escherichia coli O157:H7 ortholog: z1252.


ensembl_gene_id: c1045
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: c1046
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: c1047
symbol: ycaL
gene_biotype: protein_coding
description:
  Putative metalloprotease ycaL; Escherichia coli K-12 ortholog: b0909; Escherichia coli O157:H7 ortholog: z1255.


ensembl_gene_id: c1049
symbol: rpsA
gene_biotype: protein_coding
description:
  30S ribosomal protein S1; Required for translation of most natural mRNAs except for leaderless mRNA. Binds mRNA upstream of the Shine-Dalgarno (SD) sequence and helps it bind to the 30S ribosomal subunit; acts as an RNA chaperone to unfold structured mRNA on the ribosome but is not essential for mRNAs with strong SDs and little 5'-UTR structure, thus it may help fine-tune which mRNAs that are translated. Unwinds dsRNA by binding to transiently formed ssRNA regions; binds about 10 nucleotides. Has a preference for polypyrimidine tracts. Negatively autoregulates its own translation.


ensembl_gene_id: c1050
symbol: himD
gene_biotype: protein_coding
description:
  Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: c1052
symbol: ycaI
gene_biotype: protein_coding
description:
  Hypothetical protein ycaI; Escherichia coli K-12 ortholog: b0913; Escherichia coli O157:H7 ortholog: z1259.


ensembl_gene_id: c1054
symbol: msbA
gene_biotype: protein_coding
description:
  Probable transport ATP-binding protein msbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: c1057
symbol: ycaQ
gene_biotype: protein_coding
description:
  Hypothetical protein ycaQ; Escherichia coli K-12 ortholog: b0916; Escherichia coli O157:H7 ortholog: z1262.


ensembl_gene_id: c1058
symbol: ycaR
gene_biotype: protein_coding
description:
  Protein ycaR; Escherichia coli K-12 ortholog: b0917; Escherichia coli O157:H7 ortholog: z1263; Belongs to the UPF0434 family.


ensembl_gene_id: c1059
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: c1060
symbol: ycbJ
gene_biotype: protein_coding
description:
  Hypothetical protein ycbJ; Escherichia coli K-12 ortholog: b0919; Escherichia coli O157:H7 ortholog: z1265.


ensembl_gene_id: c1061
symbol: ycbC
gene_biotype: protein_coding
description:
  Hypothetical protein ycbC; Escherichia coli K-12 ortholog: b0920; Escherichia coli O157:H7 ortholog: z1267.


ensembl_gene_id: c1063
symbol: smtA
gene_biotype: protein_coding
description:
  Protein smtA; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.


ensembl_gene_id: c1064
symbol: mukF
gene_biotype: protein_coding
description:
  MukF protein; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity.


ensembl_gene_id: c1065
symbol: mukE
gene_biotype: protein_coding
description:
  MukE protein; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF.


ensembl_gene_id: c1066
symbol: mukB
gene_biotype: protein_coding
description:
  Cell division protein mukB; Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division; Belongs to the SMC family. MukB subfamily.


ensembl_gene_id: c1067
symbol: ycbB
gene_biotype: protein_coding
description:
  Hypothetical protein ycbB; Escherichia coli K-12 ortholog: b0925; Escherichia coli O157:H7 ortholog: z1272.


ensembl_gene_id: c1068
symbol: ycbK
gene_biotype: protein_coding
description:
  Hypothetical protein ycbK; Escherichia coli K-12 ortholog: b0926; Escherichia coli O157:H7 ortholog: z1273.


ensembl_gene_id: c1069
symbol: ycbL
gene_biotype: protein_coding
description:
  Hypothetical protein ycbL; Escherichia coli K-12 ortholog: b0927; Escherichia coli O157:H7 ortholog: z1274.


ensembl_gene_id: c1070
symbol: aspC
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Escherichia coli K-12 ortholog: b0928; Escherichia coli O157:H7 ortholog: z1275.


ensembl_gene_id: c1071
symbol: ompF
gene_biotype: protein_coding
description:
  Outer membrane protein F precursor; Porin ompF; Escherichia coli K-12 ortholog: b0929; Escherichia coli O157:H7 ortholog: z1276; Belongs to the Gram-negative porin family.


ensembl_gene_id: c1072
symbol: asnS
gene_biotype: protein_coding
description:
  Asparaginyl-tRNA synthetase; Escherichia coli K-12 ortholog: b0930; Escherichia coli O157:H7 ortholog: z1278.


ensembl_gene_id: c1073
symbol: pncB
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.


ensembl_gene_id: c1076
symbol: ycbE
gene_biotype: protein_coding
description:
  Putative aliphatic sulfonates transport ATP-binding protein ssuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.


ensembl_gene_id: c1077
symbol: ycbM
gene_biotype: protein_coding
description:
  Putative aliphatic sulfonates transport permease protein ssuC; Escherichia coli K-12 ortholog: b0934; Escherichia coli O157:H7 ortholog: z1282.


ensembl_gene_id: c1078
symbol: ycbN
gene_biotype: protein_coding
description:
  Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.


ensembl_gene_id: c1079
symbol: ycbO
gene_biotype: protein_coding
description:
  Putative aliphatic sulfonates binding protein precursor; Escherichia coli K-12 ortholog: b0936; Escherichia coli O157:H7 ortholog: z1284.


ensembl_gene_id: c1081
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: c1082
symbol: ycbW
gene_biotype: protein_coding
description:
  Hypothetical protein ycbW; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.


ensembl_gene_id: c1083
symbol: ycbX
gene_biotype: protein_coding
description:
  Hypothetical protein ycbX; Escherichia coli K-12 ortholog: b0947; Escherichia coli O157:H7 ortholog: z1297.


ensembl_gene_id: c1084
symbol: ycbY
gene_biotype: protein_coding
description:
  Hypothetical protein ycbY; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.


ensembl_gene_id: c1085
symbol: uup
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein uup; Escherichia coli K-12 ortholog: b0949; Escherichia coli O157:H7 ortholog: z1299.


ensembl_gene_id: c1086
symbol: pqiA
gene_biotype: protein_coding
description:
  Paraquat-inducible protein A; Component of a transport pathway that contributes to membrane integrity.


ensembl_gene_id: c1087
symbol: pqiB
gene_biotype: protein_coding
description:
  Paraquat-inducible protein B; Escherichia coli K-12 ortholog: b0951; Escherichia coli O157:H7 ortholog: z1301.


ensembl_gene_id: c1088
symbol: ymbA
gene_biotype: protein_coding
description:
  Hypothetical protein ymbA; Escherichia coli K-12 ortholog: b0952; Escherichia coli O157:H7 ortholog: z1302.


ensembl_gene_id: c1090
symbol: fabA
gene_biotype: protein_coding
description:
  3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length (By similarity).


ensembl_gene_id: c1091
symbol: c1091
gene_biotype: protein_coding
description:
  Putative protease La homolog; Escherichia coli K-12 ortholog: b0955; Escherichia coli O157:H7 ortholog: z1305.


ensembl_gene_id: c1092
symbol: ycbG
gene_biotype: protein_coding
description:
  Hypothetical protein ycbG; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.


ensembl_gene_id: c1093
symbol: ompA
gene_biotype: protein_coding
description:
  Outer membrane protein II*; Escherichia coli K-12 ortholog: b0957; Escherichia coli O157:H7 ortholog: z1307; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.


ensembl_gene_id: c1095
symbol: sulA
gene_biotype: protein_coding
description:
  Cell division inhibitor; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division.


ensembl_gene_id: c1096
symbol: yccR
gene_biotype: protein_coding
description:
  Hypothetical protein yccR; Escherichia coli K-12 ortholog: b0959; Escherichia coli O157:H7 ortholog: z1309.


ensembl_gene_id: c1097
symbol: yccS
gene_biotype: protein_coding
description:
  Hypothetical protein yccS; Escherichia coli K-12 ortholog: b0960; Escherichia coli O157:H7 ortholog: z1311.


ensembl_gene_id: c1098
symbol: yccF
gene_biotype: protein_coding
description:
  Hypothetical protein yccF; Escherichia coli K-12 ortholog: b0961; Escherichia coli O157:H7 ortholog: z1312.


ensembl_gene_id: c1101
symbol: yccT
gene_biotype: protein_coding
description:
  Hypothetical protein yccT precursor; Escherichia coli K-12 ortholog: b0964; Escherichia coli O157:H7 ortholog: z1315; Belongs to the UPF0319 family.


ensembl_gene_id: c1104
symbol: yccV
gene_biotype: protein_coding
description:
  Hypothetical protein yccV; Involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress; Belongs to the HspQ family.


ensembl_gene_id: c1105
symbol: yccW
gene_biotype: protein_coding
description:
  Hypothetical protein yccW; Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA.


ensembl_gene_id: c1106
symbol: yccX
gene_biotype: protein_coding
description:
  Putative acylphosphatase; Escherichia coli K-12 ortholog: b0968; Escherichia coli O157:H7 ortholog: z1320.


ensembl_gene_id: c1107
symbol: yccK
gene_biotype: protein_coding
description:
  Hypothetical protein yccK; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Could accept sulfur from TusD (By similarity).


ensembl_gene_id: c1109
symbol: c1109
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 61 to 197 of 214 are 23.91 pct identical to residues 954 to 1090 of 1461 from GenPept.129 : >gb|AAL92653.1|AC115681_1 (AC115681) HYPOTHETICAL 31.4 KDA PROTEIN [Dictyostelium discoideum].


ensembl_gene_id: c1110
symbol: yccA
gene_biotype: protein_coding
description:
  Hypothetical protein yccA; Escherichia coli K-12 ortholog: b0970; Escherichia coli O157:H7 ortholog: z1322.


ensembl_gene_id: c1111
symbol: c1111
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 58 of 58 are 100.00 pct identical to residues 1 to 58 of 58 from GenPept.129 : >dbj|BAA35736.1| (D90734) ORF_ID:o224#4 [Escherichia coli].


ensembl_gene_id: c1113
symbol: hyaA
gene_biotype: protein_coding
description:
  Hydrogenase-1 small chain precursor; This is one of three E.coli hydrogenases synthesized in response to different physiological conditions. HYD1 is believed to have a role in hydrogen cycling during fermentative growth.


ensembl_gene_id: c1114
symbol: hyaB
gene_biotype: protein_coding
description:
  Hydrogenase-1 large chain; Escherichia coli K-12 ortholog: b0973; Escherichia coli O157:H7 ortholog: z1390; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.


ensembl_gene_id: c1115
symbol: hyaC
gene_biotype: protein_coding
description:
  Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit; Escherichia coli K-12 ortholog: b0974; Escherichia coli O157:H7 ortholog: z1391.


ensembl_gene_id: c1116
symbol: hyaD
gene_biotype: protein_coding
description:
  Hydrogenase 1 maturation protease; Escherichia coli K-12 ortholog: b0975; Escherichia coli O157:H7 ortholog: z1392.


ensembl_gene_id: c1117
symbol: hyaE
gene_biotype: protein_coding
description:
  Hydrogenase-1 operon protein hyaE; Escherichia coli K-12 ortholog: b0976; Escherichia coli O157:H7 ortholog: z1393.


ensembl_gene_id: c1118
symbol: hyaF
gene_biotype: protein_coding
description:
  Hydrogenase-1 operon protein hyaF; Escherichia coli K-12 ortholog: b0977; Escherichia coli O157:H7 ortholog: z1394.


ensembl_gene_id: c1119
symbol: appC
gene_biotype: protein_coding
description:
  Cytochrome BD-II oxidase subunit I; Escherichia coli K-12 ortholog: b0978; Escherichia coli O157:H7 ortholog: z1395.


ensembl_gene_id: c1120
symbol: appB
gene_biotype: protein_coding
description:
  Cytochrome BD-II oxidase subunit II; Escherichia coli K-12 ortholog: b0979; Escherichia coli O157:H7 ortholog: z1396.


ensembl_gene_id: c1121
symbol: appA
gene_biotype: protein_coding
description:
  Periplasmic appA protein precursor; Escherichia coli K-12 ortholog: b0980; Escherichia coli O157:H7 ortholog: z1397; bifunctional; Phosphoanhydride phosphohydrolase; 6-phytase.


ensembl_gene_id: c1122
symbol: cspH
gene_biotype: protein_coding
description:
  Cold shock-like protein cspH; CSP-H; Escherichia coli K-12 ortholog: b0989; Escherichia coli O157:H7 ortholog: z1405.


ensembl_gene_id: c1123
symbol: cspG
gene_biotype: protein_coding
description:
  Cold shock-like protein cspG; CSP-G; Escherichia coli K-12 ortholog: b0990; Escherichia coli O157:H7 ortholog: z1406.


ensembl_gene_id: c1127
symbol: yccM
gene_biotype: protein_coding
description:
  Putative electron transport protein yccM; Escherichia coli K-12 ortholog: b0992; Escherichia coli O157:H7 ortholog: z1409.


ensembl_gene_id: c1128
symbol: torS
gene_biotype: protein_coding
description:
  Sensor protein torS; Escherichia coli K-12 ortholog: b0993; Escherichia coli O157:H7 ortholog: z1410.


ensembl_gene_id: c1130
symbol: torT
gene_biotype: protein_coding
description:
  Periplasmic protein torT precursor; Escherichia coli K-12 ortholog: b0994; Escherichia coli O157:H7 ortholog: z1411.


ensembl_gene_id: c1131
symbol: torR
gene_biotype: protein_coding
description:
  TorCAD operon transcriptional Regulatory protein torR; Escherichia coli K-12 ortholog: b0995; Escherichia coli O157:H7 ortholog: z1412.


ensembl_gene_id: c1132
symbol: torC
gene_biotype: protein_coding
description:
  Cytochrome c-type protein torC; Escherichia coli K-12 ortholog: b0996; Escherichia coli O157:H7 ortholog: z1414; Belongs to the TorC/TorY family.


ensembl_gene_id: c1133
symbol: torA
gene_biotype: protein_coding
description:
  Trimethylamine-N-oxide reductase 1 precursor; Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions.


ensembl_gene_id: c1134
symbol: torD
gene_biotype: protein_coding
description:
  Chaperone protein torD; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.


ensembl_gene_id: c1135
symbol: yccD
gene_biotype: protein_coding
description:
  Hypothetical protein yccD; Interacts with CbpA and inhibits both the DnaJ-like co- chaperone activity and the DNA binding activity of CbpA. Together with CbpA, modulates the activity of the DnaK chaperone system. Does not inhibit the co-chaperone activity of DnaJ.


ensembl_gene_id: c1136
symbol: cbpA
gene_biotype: protein_coding
description:
  Curved DNA-binding protein; DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adaptive response to environmental stresses other than heat shock. Lacks autonomous chaperone activity; binds native substrates and targets them for recognition by DnaK. Its activity is inhibited by the binding of CbpM.


ensembl_gene_id: c1137
symbol: agp
gene_biotype: protein_coding
description:
  Glucose-1-phosphatase precursor; Escherichia coli K-12 ortholog: b1002; Escherichia coli O157:H7 ortholog: z1421.


ensembl_gene_id: c1138
symbol: c1138
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 21 to 84 of 84 are 96.87 pct identical to residues 350 to 413 of 413 from GenPept.129 : >gb|AAG55550.1|AE005294_5 (AE005294) periplasmic glucose-1-phosphatase [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1139
symbol: yccJ
gene_biotype: protein_coding
description:
  Hypothetical protein yccJ; Escherichia coli K-12 ortholog: b1003; Escherichia coli O157:H7 ortholog: z1422.


ensembl_gene_id: c1140
symbol: wrbA
gene_biotype: protein_coding
description:
  Flavoprotein wrbA; Trp repressor binding protein; Escherichia coli K-12 ortholog: b1004; Escherichia coli O157:H7 ortholog: z1423.


ensembl_gene_id: c1143
symbol: ycdG
gene_biotype: protein_coding
description:
  Putative purine permease ycdG; Escherichia coli K-12 ortholog: b1006; Escherichia coli O157:H7 ortholog: z1505.


ensembl_gene_id: c1144
symbol: rutF
gene_biotype: protein_coding
description:
  Putative flavin:NADH reductase ycdH; Catalyzes the reduction of FMN to FMNH2 which is used to reduce pyrimidine by RutA via the Rut pathway.


ensembl_gene_id: c1145
symbol: rutE
gene_biotype: protein_coding
description:
  Putative NADH dehydrogenase/NAD(P)H nitroreductase ycdI; May reduce toxic product malonic semialdehyde to 3- hydroxypropionic acid, which is excreted; Belongs to the nitroreductase family. HadB/RutE subfamily.


ensembl_gene_id: c1146
symbol: ycdJ
gene_biotype: protein_coding
description:
  Hypothetical protein ycdJ; May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation.


ensembl_gene_id: c1147
symbol: ycdK
gene_biotype: protein_coding
description:
  Hypothetical protein ycdK; May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation (By similarity).


ensembl_gene_id: c1148
symbol: ycdL
gene_biotype: protein_coding
description:
  Hypothetical isochorismatase family protein ycdL; In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2.


ensembl_gene_id: c1149
symbol: rutA
gene_biotype: protein_coding
description:
  Putative monooxygenase ycdM; Catalyzes the pyrimidine ring opening between N-3 and C-4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate; Belongs to the NtaA/SnaA/SoxA(DszA) monooxygenase family. RutA subfamily.


ensembl_gene_id: c1150
symbol: ycdC
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ycdC; Master transcription regulator which represses the degradation of pyrimidines (rutABCDEFG) and purines (gcl operon) for maintenance of metabolic balance between pyrimidines and purines. It also regulates the synthesis of pyrimidine nucleotides and arginine from glutamine (carAB) and the supply of glutamate (gadABWX) (By similarity).


ensembl_gene_id: c1151
symbol: putA
gene_biotype: protein_coding
description:
  PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family.  In the N-terminal section; belongs to the proline dehydrogenase family.


ensembl_gene_id: c1153
symbol: c1153
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 63 of 63 are 100.00 pct identical to residues 1 to 63 of 111 from GenPept.129 : >emb|CAA29142.1| (X05653) ORF (AA 1-111) [Escherichia coli].


ensembl_gene_id: c1154
symbol: putP
gene_biotype: protein_coding
description:
  Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: c1155
symbol: efeU
gene_biotype: protein_coding
description:
  Putative cytochrome; Uptake of Fe(2+) ions across the membrane. Belongs to the oxidase-dependent Fe transporter (OFeT) (TC 9.A.10.1) family.


ensembl_gene_id: c1156
symbol: ycdO
gene_biotype: protein_coding
description:
  Protein ycdO; Involved in Fe(2+) uptake. Could be an iron-binding and/or electron-transfer component (By similarity); Belongs to the EfeM/EfeO family.


ensembl_gene_id: c1157
symbol: ycdB
gene_biotype: protein_coding
description:
  Hypothetical protein ycdB precursor; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact (By similarity); Belongs to the DyP-type peroxidase family. EfeB subfamily.


ensembl_gene_id: c1159
symbol: phoH
gene_biotype: protein_coding
description:
  PhoH protein; Phosphate starvation-inducible protein psiH; Escherichia coli K-12 ortholog: b1020; Escherichia coli O157:H7 ortholog: z1522.


ensembl_gene_id: c1160
symbol: ycdP
gene_biotype: protein_coding
description:
  Hypothetical protein ycdP; Escherichia coli K-12 ortholog: b1021; Escherichia coli O157:H7 ortholog: z1523.


ensembl_gene_id: c1161
symbol: ycdQ
gene_biotype: protein_coding
description:
  Hypothetical protein ycdQ; Escherichia coli K-12 ortholog: b1022; Escherichia coli O157:H7 ortholog: z1524.


ensembl_gene_id: c1162
symbol: ycdR
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein ycdR precursor; Escherichia coli K-12 ortholog: b1023; Escherichia coli O157:H7 ortholog: z1525.


ensembl_gene_id: c1163
symbol: ycdS
gene_biotype: protein_coding
description:
  Hypothetical protein ycdS precursor; Escherichia coli K-12 ortholog: b1024; Escherichia coli O157:H7 ortholog: z1526.


ensembl_gene_id: c1164
symbol: ycdT
gene_biotype: protein_coding
description:
  Hypothetical protein ycdT; Escherichia coli K-12 ortholog: b1025; Escherichia coli O157:H7 ortholog: z1527.


ensembl_gene_id: c1165
symbol: c1165
gene_biotype: protein_coding
description:
  Putative P4-family integrase; Escherichia coli O157:H7 ortholog: z1559; Belongs to the 'phage' integrase family.


ensembl_gene_id: c1167
symbol: c1167
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 8 to 54 of 54 are 76.59 pct identical to residues 37 to 83 of 90 from GenPept.129 : >gb|AAL72381.1| (AF386526) INSA [Shigella flexneri 2a].


ensembl_gene_id: c1169
symbol: alpA
gene_biotype: protein_coding
description:
  Prophage CP4-57 Regulatory protein alpA; Escherichia coli K-12 ortholog: b2624; Escherichia coli O157:H7 ortholog: z1563.


ensembl_gene_id: c1170
symbol: c1170
gene_biotype: protein_coding
description:
  Hypothetical protein yfjI; Escherichia coli K-12 ortholog: b2625; Escherichia coli O157:H7 ortholog: z1565.


ensembl_gene_id: c1173
symbol: c1173
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 19 to 68 of 68 are 83.99 pct identical to residues 204 to 253 of 287 from GenPept.129 : >gb|AAL22135.1| (AE008850) putative methyltransferase [Salmonella typhimurium LT2].


ensembl_gene_id: c1174
symbol: c1174
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 89 to 661 of 666 are 54.87 pct identical to residues 54 to 622 of 636 from GenPept.129 : >gb|AAL73391.1|AF419157_1 (AF419157) enterotoxin [Aeromonas hydrophila].


ensembl_gene_id: c1175
symbol: c1175
gene_biotype: protein_coding
description:
  Putative aminotransferase; Residues 2 to 387 of 388 are 34.62 pct identical to residues 1 to 377 of 384 from GenPept.129 : >gb|AAK80912.1|AE007794_4 (AE007794) PLP-dependent aminotransferase, [Clostridium acetobutylicum].


ensembl_gene_id: c1176
symbol: c1176
gene_biotype: protein_coding
description:
  Hypothetical protein; Fusion of Escherichia coli K-12 B3132 and B3136; Residues 94 to 207 of 207 are 80.70 pct identical to residues 268 to 381 of 384 from GenPept.129 : >gb|AAC76170.1| (AE000395) putative tagatose-6-phosphate aldose/ketose isomerase [Escherichia coli K12].


ensembl_gene_id: c1186
symbol: c1186
gene_biotype: protein_coding
description:
  Putative beta-ketoacyl-ACP synthase; Escherichia coli O157:H7 ortholog: z4866; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: c1187
symbol: c1187
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier protein] reductase; Escherichia coli K-12 ortholog: b1093; Escherichia coli O157:H7 ortholog: z4865.


ensembl_gene_id: c1189
symbol: c1189
gene_biotype: protein_coding
description:
  Putative 3-oxoacyl-[ACP] synthase; Escherichia coli O157:H7 ortholog: z4863; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: c1192
symbol: c1192
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: c1199
symbol: acpP-2
gene_biotype: protein_coding
description:
  Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: c1205
symbol: c1205
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 678 to 908 of 908 are 24.05 pct identical to residues 2464 to 2674 of 3535 from GenPept.129 : >gb|AAG03431.1|AE004443_9 (AE004443) probable hemagglutinin [Pseudomonas aeruginosa].


ensembl_gene_id: c1206
symbol: c1206
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 8 to 375 of 410 are 24.61 pct identical to residues 1490 to 1839 of 2535 from GenPept.129 : >emb|CAC91295.1| (AJ414152) putative hemolysin [Yersinia pestis].


ensembl_gene_id: c1207
symbol: c1207
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 13 to 409 of 537 are 50.72 pct identical to residues 1970 to 2381 of 2535 from GenPept.129 : >emb|CAC91295.1| (AJ414152) putative hemolysin [Yersinia pestis].


ensembl_gene_id: c1208
symbol: c1208
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 121 of 125 are 57.14 pct identical to residues 3098 to 3216 of 3295 from GenPept.129 : >emb|CAC89456.1| (AJ414143) putative adhesin [Yersinia pestis].


ensembl_gene_id: c1213
symbol: c1213
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 33 to 186 of 187 are 94.15 pct identical to residues 128 to 281 of 282 from GenPept.129 : >dbj|BAA75091.1| (AB021078) 61 pct identical to 126 residues of 138 aa protein sp:YTL1_SALTY[hypothetical 15.2kd protein near tlpA operon of S. typhimurium plasmid] [Plasmid ColIb-P9].


ensembl_gene_id: c1214
symbol: c1214
gene_biotype: protein_coding
description:
  Cea protein; Residues 1 to 72 of 79 are 94.44 pct identical to residues 1 to 72 of 521 from GenPept.129 : >gb|AAA98156.1| (M37218) cea gene product [Plasmid pKY1].


ensembl_gene_id: c1215
symbol: c1215
gene_biotype: protein_coding
description:
  Entry exclusion protein 2; Residues 1 to 68 of 69 are 97.05 pct identical to residues 69 to 136 of 139 from GenPept.129 : >gb|AAB59140.1| (J01566) entry exclusion protein 2 (exc2) [Plasmid ColE1].


ensembl_gene_id: c1216
symbol: c1216
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 14 to 51 of 51 are 71.42 pct identical to residues 272 to 313 of 313 from GenPept.129 : >gb|AAL23539.1| (AE006471) putative cytoplasmic protein [Salmonella typhimurium LT2].


ensembl_gene_id: c1218
symbol: c1218
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 167 of 167 are 96.40 pct identical to residues 373 to 539 of 539 from GenPept.129 : >gb|AAL57569.1|AF453441_53 (AF453441) putative transposase [Escherichia coli].


ensembl_gene_id: c1219
symbol: c1219
gene_biotype: protein_coding
description:
  Putative Transposase; Residues 1 to 237 of 249 are 96.20 pct identical to residues 133 to 369 of 539 from GenPept.129 : >gb|AAL57569.1|AF453441_53 (AF453441) putative transposase [Escherichia coli].


ensembl_gene_id: c1220
symbol: c1220
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: c1224
symbol: c1224
gene_biotype: protein_coding
description:
  Transposase insF for insertion sequence IS3A/B/C/D/E/fA; Escherichia coli K-12 ortholog: b2089; Escherichia coli O157:H7 ortholog: z1573.


ensembl_gene_id: c1227
symbol: mchB
gene_biotype: protein_coding
description:
  MchB protein; Bactericidal antibiotic. Active on bacteria phylogenetically related to the producing strain (By similarity).


ensembl_gene_id: c1229
symbol: mchC
gene_biotype: protein_coding
description:
  MchC protein; Residues 1 to 516 of 516 are 73.44 pct identical to residues 9 to 524 of 524 from GenPept.129 : >gb|AAL08403.1| (AF063590) MceJ [Klebsiella pneumoniae].


ensembl_gene_id: c1230
symbol: mchD
gene_biotype: protein_coding
description:
  MchD protein; Residues 1 to 149 of 150 are 88.59 pct identical to residues 4 to 152 of 163 from GenPept.129 : >gb|AAL08402.1| (AF063590) MceI [Klebsiella pneumoniae].


ensembl_gene_id: c1231
symbol: mchE
gene_biotype: protein_coding
description:
  Microcin H47 secretion protein; Residues 1 to 424 of 424 are 98.82 pct identical to residues 1 to 424 of 424 from SwissProt.40 : >sp|Q9EXN6|MCHE_ECOLI Microcin H47 secretion protein mchE.


ensembl_gene_id: c1232
symbol: mchF
gene_biotype: protein_coding
description:
  Probable microcin H47 secretion ATP-binding protein; ABC transporter; Residues 7 to 704 of 704 are 98.71 pct identical to residues 1 to 698 of 698 from SwissProt.40 : >sp|Q9EXN5|MCHF_ECOLI Probable microcin H47 secretion ATP-binding protein mchF.


ensembl_gene_id: c1233
symbol: c1233
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 228 of 228 are 96.92 pct identical to residues 1 to 228 of 228 from GenPept.129 : >emb|CAC43418.1| (X16664) hypothetical protein [Escherichia coli].


ensembl_gene_id: c1237
symbol: sfaC
gene_biotype: protein_coding
description:
  Putative F1C and S fimbrial switch Regulatory protein; Residues 22 to 94 of 94 are 93.15 pct identical to residues 5 to 77 of 77 from SwissProt.40 : >sp|P04743|PAPI_ECOLI Major pilus subunit operon regulatory protein.


ensembl_gene_id: c1238
symbol: sfaB
gene_biotype: protein_coding
description:
  Putative F1C and S fimbrial switch Regulatory protein; Residues 1 to 102 of 109 are 82.35 pct identical to residues 1 to 102 of 104 from SwissProt.40 : >sp|P04744|PAPB_ECOLI MAJOR PILU SUBUNIT OPERON REGULATORY PROTEIN PAPB.


ensembl_gene_id: c1239
symbol: focA
gene_biotype: protein_coding
description:
  F1C major fimbrial subunit precursor; Fimbriae (also called pili), polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, enable bacteria to colonize the epithelium of specific host organs; Belongs to the fimbrial protein family.


ensembl_gene_id: c1240
symbol: sfaD
gene_biotype: protein_coding
description:
  Putative minor F1C fimbrial subunit precursor; Escherichia coli K-12 ortholog: b4315; Escherichia coli O157:H7 ortholog: z5913.


ensembl_gene_id: c1241
symbol: focC
gene_biotype: protein_coding
description:
  F1C periplasmic chaperone; Involved in the biogenesis of the F1C fimbriae. Belongs to the periplasmic pilus chaperone family.


ensembl_gene_id: c1242
symbol: focD
gene_biotype: protein_coding
description:
  F1C fimbrial usher; Escherichia coli K-12 ortholog: b4317; Escherichia coli O157:H7 ortholog: z5915.


ensembl_gene_id: c1243
symbol: focF
gene_biotype: protein_coding
description:
  F1C minor fimbrial subunit F precursor; Escherichia coli K-12 ortholog: b4318; Escherichia coli O157:H7 ortholog: z5916.


ensembl_gene_id: c1244
symbol: focG
gene_biotype: protein_coding
description:
  F1C minor fimbrial subunit protein G presursor; Escherichia coli K-12 ortholog: b4319; Escherichia coli O157:H7 ortholog: z5917.


ensembl_gene_id: c1245
symbol: focH
gene_biotype: protein_coding
description:
  F1C Putative fimbrial adhesin precursor; Residues 38 to 336 of 336 are 81.60 pct identical to residues 1 to 291 of 291 from SwissProt.40 : >sp|P13431|SFAH_ECOLI S-FIMBRIAL ADHESIN PROTEIN SFAH PRECURSOR.


ensembl_gene_id: c1246
symbol: c1246
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 21 to 238 of 246 are 27.35 pct identical to residues 12 to 226 of 232 from GenPept.129 : >emb|CAC93018.1| (AJ414153) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c1247
symbol: focX
gene_biotype: protein_coding
description:
  Putative Regulatory protein; Residues 18 to 183 of 183 are 100.00 pct identical to residues 1 to 166 of 166 from SwissProt.40 : >sp|P42192|PRSX_ECOLI PRSX PROTEIN.


ensembl_gene_id: c1248
symbol: c1248
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 168 to 321 of 345 are 30.57 pct identical to residues 20 to 172 of 188 from GenPept.129 : >dbj|BAB06239.1| (AP001515) transposase related protein (20) [Bacillus halodurans].


ensembl_gene_id: c1250
symbol: iroN
gene_biotype: protein_coding
description:
  Siderophore receptor IroN; Residues 3 to 725 of 725 are 51.25 pct identical to residues 1 to 746 of 746 from MG1655 : b0584.


ensembl_gene_id: c1251
symbol: iroE
gene_biotype: protein_coding
description:
  IroE protein; Residues 1 to 318 of 318 are 99.37 pct identical to residues 1 to 318 of 318 from GenPept.129 : >emb|CAC43425.1| (X16664) IroE protein [Escherichia coli].


ensembl_gene_id: c1252
symbol: iroD
gene_biotype: protein_coding
description:
  Ferric enterochelin esterase; Residues 1 to 409 of 409 are 99.75 pct identical to residues 1 to 409 of 409 from GenPept.129 : >emb|CAC43426.1| (X16664) IroD protein [Escherichia coli].


ensembl_gene_id: c1253
symbol: iroC
gene_biotype: protein_coding
description:
  ATP binding cassette (ABC) transporter homolog; Residues 27 to 1231 of 1245 are 80.16 pct identical to residues 1 to 1209 of 1218 from GenPept.129 : >emb|CAD05883.1| (AL627276) putative ABC transporter protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c1257
symbol: c1257
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 8 to 120 of 120 are 98.23 pct identical to residues 316 to 428 of 442 from MG1655 : b4278.


ensembl_gene_id: c1259
symbol: c1259
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 139 of 144 are 50.71 pct identical to residues 104 to 242 of 258 from GenPept.129 : >gb|AAK18487.1|AF348706_176 (AF348706) orf, hypothetical [Shigella flexneri].


ensembl_gene_id: c1261
symbol: c1261
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 35 of 121 are 97.14 pct identical to residues 59 to 93 of 316 from GenPept.129 : >gb|AAK18437.1|AF348706_126 (AF348706) putative transposase [Shigella flexneri].


ensembl_gene_id: c1264
symbol: c1264
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 9 to 146 of 146 are 42.75 pct identical to residues 16 to 160 of 480 from GenPept.129 : >gb|AAG42314.1|AF306519_2 (AF306519) Tn5 transposase [Plasposon pTnMod2-OKm3].


ensembl_gene_id: c1266
symbol: c1266
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 260 of 263 are 27.61 pct identical to residues 1 to 261 of 268 from GenPept.129 : >emb|CAB84914.1| (AL162756) putative [Neisseria meningitidis Z2491].


ensembl_gene_id: c1267
symbol: c1267
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 20 to 413 of 420 are 28.81 pct identical to residues 1 to 390 of 395 from GenPept.129 : >dbj|BAB05509.1| (AP001513) BH1790; unknown conserved protein [Bacillus halodurans].


ensembl_gene_id: c1268
symbol: c1268
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 59 of 60 are 91.52 pct identical to residues 477 to 535 of 537 from GenPept.129 : >gb|AAG55715.1|AE005309_5 (AE005309) unknown in ISEc8 [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1269
symbol: c1269
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 25 to 254 of 378 are 43.04 pct identical to residues 83 to 310 of 327 from MG1655 : b0644.


ensembl_gene_id: c1270
symbol: c1270
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 173 of 180 are 37.35 pct identical to residues 1 to 174 of 178 from GenPept.129 : >emb|CAC89258.1| (AJ414142) hypothetical protein [Yersinia pestis].


ensembl_gene_id: c1271
symbol: c1271
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 80 of 98 are 48.75 pct identical to residues 19 to 92 of 520 from GenPept.129 : >emb|CAA31541.1| (X13145) hsdM protein (AA 1-520) [Escherichia coli].


ensembl_gene_id: c1272
symbol: c1272
gene_biotype: protein_coding
description:
  Hypothetical protein yeeP; Escherichia coli K-12 ortholog: b1999; Escherichia coli O157:H7 ortholog: z1650.


ensembl_gene_id: c1273
symbol: c1273
gene_biotype: protein_coding
description:
  Antigen 43 precursor; AG43; Sap; Escherichia coli K-12 ortholog: b2000; Escherichia coli O157:H7 ortholog: z1651.


ensembl_gene_id: c1275
symbol: c1275
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 9 to 151 of 151 are 98.60 pct identical to residues 1 to 143 of 143 from GenPept.129 : >gb|AAK00476.1| (AF200692) unknown [Shigella flexneri 2a].


ensembl_gene_id: c1279
symbol: c1279
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 110 to 302 of 302 are 91.19 pct identical to residues 1 to 193 of 193 from GenPept.129 : >gb|AAL67348.1|AF447814_16 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c1281
symbol: c1281
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 319 of 319 are 92.78 pct identical to residues 1 to 319 of 319 from GenPept.129 : >gb|AAL67347.1|AF447814_15 (AF447814) unknown [Escherichia coli].


ensembl_gene_id: c1285
symbol: c1285
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 178 to 214 of 214 are 78.37 pct identical to residues 1 to 37 of 37 from GenPept.129 : >gb|AAL57577.1|AF453442_6 (AF453442) unknown [Escherichia coli].


ensembl_gene_id: c1286
symbol: c1286
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 63 of 63 are 98.41 pct identical to residues 37 to 99 of 160 from GenPept.129 : >gb|AAL67343.1|AF447814_11 (AF447814) intergenic-region protein [Escherichia coli].


ensembl_gene_id: c1287
symbol: c1287
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 55 of 55 are 98.18 pct identical to residues 106 to 160 of 160 from GenPept.129 : >gb|AAL67343.1|AF447814_11 (AF447814) intergenic-region protein [Escherichia coli].


ensembl_gene_id: c1291
symbol: c1291
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 18 to 169 of 169 are 95.39 pct identical to residues 1 to 152 of 152 from SwissProt.40 : >sp|Q57334|T200_SALTY Transposase for insertion sequence element IS200.


ensembl_gene_id: c1293
symbol: c1293
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 42 to 88 of 88 are 87.23 pct identical to residues 8 to 54 of 75 from GenPept.129 : >gb|AAL08482.1| (AF326777) unknown [Shigella flexneri 2a].


ensembl_gene_id: c1295
symbol: ycdW
gene_biotype: protein_coding
description:
  Putative 2-hydroxyacid dehydrogenase ycdW; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.


ensembl_gene_id: c1296
symbol: ycdX
gene_biotype: protein_coding
description:
  Hypothetical protein ycdX precursor; Escherichia coli K-12 ortholog: b1034; Escherichia coli O157:H7 ortholog: z1667; Belongs to the PHP family.


ensembl_gene_id: c1297
symbol: ycdY
gene_biotype: protein_coding
description:
  Hypothetical protein ycdY; Escherichia coli K-12 ortholog: b1035; Escherichia coli O157:H7 ortholog: z1668.


ensembl_gene_id: c1298
symbol: ycdZ
gene_biotype: protein_coding
description:
  Hypothetical protein ycdZ; Escherichia coli K-12 ortholog: b1036; Escherichia coli O157:H7 ortholog: z1669.


ensembl_gene_id: c1299
symbol: csgG
gene_biotype: protein_coding
description:
  Curli production assembly/transport component csgG precursor; May be involved in the biogenesis of curli organelles. Belongs to the CsgG family.


ensembl_gene_id: c1300
symbol: csgF
gene_biotype: protein_coding
description:
  Curli production assembly/transport component csgF precursor; May be involved in the biogenesis of curli organelles.


ensembl_gene_id: c1301
symbol: csgE
gene_biotype: protein_coding
description:
  Curli production assembly/transport component csgE precursor; May be involved in the biogenesis of curli organelles.


ensembl_gene_id: c1302
symbol: csgD
gene_biotype: protein_coding
description:
  Probable csgAB operon transcriptional Regulatory protein; Escherichia coli K-12 ortholog: b1040; Escherichia coli O157:H7 ortholog: z1673.


ensembl_gene_id: c1304
symbol: c1304
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 4 to 43 of 44 are 92.50 pct identical to residues 1 to 40 of 79 from GenPept.129 : >dbj|BAB34841.1| (AP002554) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c1305
symbol: csgB
gene_biotype: protein_coding
description:
  Minor curlin subunit precursor; Escherichia coli K-12 ortholog: b1041; Escherichia coli O157:H7 ortholog: z1675.


ensembl_gene_id: c1306
symbol: csgA
gene_biotype: protein_coding
description:
  Major curlin subunit precursor; Escherichia coli K-12 ortholog: b1042; Escherichia coli O157:H7 ortholog: z1676.


ensembl_gene_id: c1307
symbol: csgC
gene_biotype: protein_coding
description:
  Putative curli production protein csgC precursor; Escherichia coli K-12 ortholog: b1043; Escherichia coli O157:H7 ortholog: z1677.


ensembl_gene_id: c1308
symbol: ymdA
gene_biotype: protein_coding
description:
  Hypothetical protein ymdA precursor; Escherichia coli K-12 ortholog: b1044; Escherichia coli O157:H7 ortholog: z1678.


ensembl_gene_id: c1309
symbol: ymdB
gene_biotype: protein_coding
description:
  Hypothetical protein ymdB; Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation; Belongs to the YmdB family.


ensembl_gene_id: c1310
symbol: ymdC
gene_biotype: protein_coding
description:
  Hypothetical protein ymdC; Catalyzes the synthesis of cardiolipin (CL) (diphosphatidylglycerol) from phosphatidylglycerol (PG) and phosphatidylethanolamine (PE); Belongs to the phospholipase D family. Cardiolipin synthase subfamily. ClsC sub-subfamily.


ensembl_gene_id: c1311
symbol: ymdD
gene_biotype: protein_coding
description:
  Glucans biosynthesis protein mdoC; Necessary for the succinyl substitution of periplasmic glucans. Could catalyze the transfer of succinyl residues from the cytoplasmic side of the membrane to the nascent glucan backbones on the periplasmic side of the membrane.


ensembl_gene_id: c1313
symbol: mdoG
gene_biotype: protein_coding
description:
  Periplasmic glucans biosynthesis protein mdoG precursor; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: c1314
symbol: mdoH
gene_biotype: protein_coding
description:
  Periplasmic glucans biosynthesis protein mdoH; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: c1315
symbol: c1315
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 35 of 74 are 68.57 pct identical to residues 20 to 54 of 54 from GenPept.129 : >gb|AAC76157.1| (AE000394) orf, hypothetical protein [Escherichia coli K12].


ensembl_gene_id: c1316
symbol: yceK
gene_biotype: protein_coding
description:
  Hypothetical protein yceK precursor; Escherichia coli K-12 ortholog: b1050; Escherichia coli O157:H7 ortholog: z1685.


ensembl_gene_id: c1318
symbol: msyB
gene_biotype: protein_coding
description:
  Acidic protein msyB; Escherichia coli K-12 ortholog: b1051; Escherichia coli O157:H7 ortholog: z1686.


ensembl_gene_id: c1319
symbol: yceE
gene_biotype: protein_coding
description:
  Hypothetical transport protein yceE; Confers resistance to fosfomycin and deoxycholate. Belongs to the major facilitator superfamily. DHA1 family. MdtG (TC 2.A.1.2.20) subfamily.


ensembl_gene_id: c1320
symbol: htrB
gene_biotype: protein_coding
description:
  Lipid A biosynthesis lauroyl acyltransferase; Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)-(lauroyl)-lipid IV(A).


ensembl_gene_id: c1321
symbol: yceA
gene_biotype: protein_coding
description:
  Hypothetical protein yceA; ORF39; Escherichia coli K-12 ortholog: b1055; Escherichia coli O157:H7 ortholog: z1691; Belongs to the UPF0176 family.


ensembl_gene_id: c1322
symbol: yceI
gene_biotype: protein_coding
description:
  Protein yceI precursor; Escherichia coli K-12 ortholog: b1056; Escherichia coli O157:H7 ortholog: z1692.


ensembl_gene_id: c1323
symbol: c1323
gene_biotype: protein_coding
description:
  Cytochrome b561 homolog 2; Escherichia coli K-12 ortholog: b1057; Escherichia coli O157:H7 ortholog: z1693.


ensembl_gene_id: c1325
symbol: yceO
gene_biotype: protein_coding
description:
  Hypothetical protein yceO; Escherichia coli K-12 ortholog: b1058; Escherichia coli O157:H7 ortholog: z1695.


ensembl_gene_id: c1326
symbol: solA
gene_biotype: protein_coding
description:
  N-methyl-L-tryptophan oxidase; Catalyzes the oxidative demethylation of N-methyl-L- tryptophan; Belongs to the MSOX/MTOX family. MTOX subfamily.


ensembl_gene_id: c1327
symbol: yceP
gene_biotype: protein_coding
description:
  Hypothetical protein yceP; Represses biofilm formation in M9C glu and LB glu media but not in M9C and LB media. Seems to act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signaling pathways. Could be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway (By similarity).


ensembl_gene_id: c1328
symbol: dinI
gene_biotype: protein_coding
description:
  DNA-damage-inducible protein I; Involved in SOS regulation. Inhibits RecA by preventing RecA to bind ssDNA. Can displace ssDNA from RecA (By similarity).


ensembl_gene_id: c1330
symbol: yceB
gene_biotype: protein_coding
description:
  Putative lipoprotein yceB precursor; Escherichia coli K-12 ortholog: b1063; Escherichia coli O157:H7 ortholog: z1700.


ensembl_gene_id: c1331
symbol: grxB
gene_biotype: protein_coding
description:
  Glutaredoxin 2; Involved in reducing some disulfides in a coupled system with glutathione reductase. Does not act as hydrogen donor for ribonucleotide reductase (By similarity).


ensembl_gene_id: c1332
symbol: yceL
gene_biotype: protein_coding
description:
  Hypothetical transport protein yceL; Confers resistance to norfloxacin and enoxacin. Belongs to the major facilitator superfamily. DHA1 family. MdtH (TC 2.A.1.2.21) subfamily.


ensembl_gene_id: c1333
symbol: rimJ
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine acetyltransferase; Escherichia coli K-12 ortholog: b1066; Escherichia coli O157:H7 ortholog: z1703; Acetylating enzyme for N-terminal of ribosomal protein S5.


ensembl_gene_id: c1334
symbol: yceH
gene_biotype: protein_coding
description:
  Hypothetical protein yceH; G20.3; Escherichia coli K-12 ortholog: b1067; Escherichia coli O157:H7 ortholog: z1704; Belongs to the UPF0502 family.


ensembl_gene_id: c1338
symbol: mviN
gene_biotype: protein_coding
description:
  Virulence factor mviN homolog; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: c1339
symbol: flgN
gene_biotype: protein_coding
description:
  Flagella synthesis protein flgN; Escherichia coli K-12 ortholog: b1070; Escherichia coli O157:H7 ortholog: z1708.


ensembl_gene_id: c1340
symbol: flgM
gene_biotype: protein_coding
description:
  Negative regulator of flagellin synthesis; Anti-sigma-28 factor; Escherichia coli K-12 ortholog: b1071; Escherichia coli O157:H7 ortholog: z1709.


ensembl_gene_id: c1341
symbol: flgA
gene_biotype: protein_coding
description:
  Flagella basal body P-ring formation protein flgA precursor; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.


ensembl_gene_id: c1342
symbol: flgB
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein flgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body (By similarity).


ensembl_gene_id: c1343
symbol: flgC
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein flgC; Putative proximal rod protein; Escherichia coli K-12 ortholog: b1074; Escherichia coli O157:H7 ortholog: z1712; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: c1344
symbol: flgD
gene_biotype: protein_coding
description:
  Basal-body rod modification protein flgD; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: c1345
symbol: flgE
gene_biotype: protein_coding
description:
  Flagellar hook protein flgE; Escherichia coli K-12 ortholog: b1076; Escherichia coli O157:H7 ortholog: z1714.


ensembl_gene_id: c1346
symbol: flgF
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein flgF; Putative proximal rod protein; Escherichia coli K-12 ortholog: b1077; Escherichia coli O157:H7 ortholog: z1715.


ensembl_gene_id: c1347
symbol: flgG
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein flgG; Distal rod protein; Escherichia coli K-12 ortholog: b1078; Escherichia coli O157:H7 ortholog: z1716; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: c1348
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: c1349
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: c1350
symbol: flgJ
gene_biotype: protein_coding
description:
  Peptidoglycan hydrolase flgJ; Escherichia coli K-12 ortholog: b1081; Escherichia coli O157:H7 ortholog: z1719.


ensembl_gene_id: c1351
symbol: flgK
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 1; HAP1; Escherichia coli K-12 ortholog: b1082; Escherichia coli O157:H7 ortholog: z1720.


ensembl_gene_id: c1352
symbol: flgL
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 3; HAP3; Escherichia coli K-12 ortholog: b1083; Escherichia coli O157:H7 ortholog: z1721.


ensembl_gene_id: c1353
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: c1354
symbol: yceQ
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Escherichia coli K-12 ortholog: b1085; Escherichia coli O157:H7 ortholog: z1724.


ensembl_gene_id: c1355
symbol: rluC
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil at positions 955, 2504 and 2580 in 23S ribosomal RNA; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: c1356
symbol: yceF
gene_biotype: protein_coding
description:
  Maf-like protein yceF; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.


ensembl_gene_id: c1359
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein plsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: c1360
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.


ensembl_gene_id: c1361
symbol: fabD
gene_biotype: protein_coding
description:
  Malonyl CoA-acyl carrier protein transacylase; Escherichia coli K-12 ortholog: b1092; Escherichia coli O157:H7 ortholog: z1731; Belongs to the FabD family.


ensembl_gene_id: c1364
symbol: acpP
gene_biotype: protein_coding
description:
  Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: c1365
symbol: fabF
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis (By similarity); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: c1366
symbol: pabC
gene_biotype: protein_coding
description:
  4-amino-4-deoxychorismate lyase; Escherichia coli K-12 ortholog: b1096; Escherichia coli O157:H7 ortholog: z1735.


ensembl_gene_id: c1369
symbol: yceG
gene_biotype: protein_coding
description:
  Hypothetical protein yceG; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: c1370
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: c1371
symbol: holB
gene_biotype: protein_coding
description:
  DNA polymerase III, delta' subunit; Escherichia coli K-12 ortholog: b1099; Escherichia coli O157:H7 ortholog: z1738.


ensembl_gene_id: c1372
symbol: ycfH
gene_biotype: protein_coding
description:
  Putative deoxyribonuclease ycfH; Escherichia coli K-12 ortholog: b1100; Escherichia coli O157:H7 ortholog: z1739.


ensembl_gene_id: c1373
symbol: ptsG
gene_biotype: protein_coding
description:
  PTS system, glucose-specific IIBC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II complex composed of PtsG and Crr is involved in glucose transport. Also functions as a chemoreceptor monitoring the environment for changes in sugar concentration.


ensembl_gene_id: c1374
symbol: fhuE
gene_biotype: protein_coding
description:
  FhuE receptor precursor; Outer-membrane receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid; Escherichia coli K-12 ortholog: b1102; Escherichia coli O157:H7 ortholog: z1741.


ensembl_gene_id: c1376
symbol: ycfF
gene_biotype: protein_coding
description:
  HIT-like protein ycfF; Escherichia coli K-12 ortholog: b1103; Escherichia coli O157:H7 ortholog: z1742.


ensembl_gene_id: c1377
symbol: ycfL
gene_biotype: protein_coding
description:
  Hypothetical protein ycfL; Escherichia coli K-12 ortholog: b1104; Escherichia coli O157:H7 ortholog: z1743.


ensembl_gene_id: c1378
symbol: ycfM
gene_biotype: protein_coding
description:
  Hypothetical protein ycfM; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.


ensembl_gene_id: c1380
symbol: nagZ
gene_biotype: protein_coding
description:
  Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides.


ensembl_gene_id: c1381
symbol: ycfP
gene_biotype: protein_coding
description:
  Hypothetical protein ycfP; Escherichia coli K-12 ortholog: b1108; Escherichia coli O157:H7 ortholog: z1747; Belongs to the UPF0227 family.


ensembl_gene_id: c1382
symbol: ndh
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Escherichia coli K-12 ortholog: b1109; Escherichia coli O157:H7 ortholog: z1748.


ensembl_gene_id: c1383
symbol: ycfJ
gene_biotype: protein_coding
description:
  Hypothetical protein ycfJ; Escherichia coli K-12 ortholog: b1110; Escherichia coli O157:H7 ortholog: z1749.


ensembl_gene_id: c1385
symbol: ycfQ
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ycfQ; Escherichia coli K-12 ortholog: b1111; Escherichia coli O157:H7 ortholog: z1750.


ensembl_gene_id: c1386
symbol: ycfR
gene_biotype: protein_coding
description:
  Hypothetical protein ycfR precursor; Reduces the permeability of the outer membrane to copper. May be involved in the regulation of biofilm formation (By similarity). Belongs to the BhsA/McbA family.


ensembl_gene_id: c1387
symbol: ycfS
gene_biotype: protein_coding
description:
  Hypothetical protein ycfS precursor; Escherichia coli K-12 ortholog: b1113; Escherichia coli O157:H7 ortholog: z1752.


ensembl_gene_id: c1389
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; Belongs to the UvrB family.  In the N-terminal section; belongs to the UvrB family.


ensembl_gene_id: c1390
symbol: ycfT
gene_biotype: protein_coding
description:
  Hypothetical protein ycfT; Escherichia coli K-12 ortholog: b1115; Escherichia coli O157:H7 ortholog: z1756.


ensembl_gene_id: c1391
symbol: lolC
gene_biotype: protein_coding
description:
  Lipoprotein releasing system transmembrane protein lolC; Part of an ATP-dependent transport system LolCDE responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprotein) and of LolA (By similarity); Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily.


ensembl_gene_id: c1392
symbol: lolD
gene_biotype: protein_coding
description:
  Lipoprotein releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.


ensembl_gene_id: c1393
symbol: lolE
gene_biotype: protein_coding
description:
  Lipoprotein releasing system transmembrane protein lolE; Escherichia coli K-12 ortholog: b1118; Escherichia coli O157:H7 ortholog: z1759.


ensembl_gene_id: c1394
symbol: ycfX
gene_biotype: protein_coding
description:
  Hypothetical protein ycfX; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P.


ensembl_gene_id: c1395
symbol: cobB
gene_biotype: protein_coding
description:
  CobB protein; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form.


ensembl_gene_id: c1398
symbol: potD
gene_biotype: protein_coding
description:
  Spermidine/putrescine-binding periplasmic protein precursor; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.


ensembl_gene_id: c1399
symbol: potC
gene_biotype: protein_coding
description:
  Spermidine/putrescine transport system permease protein potC; Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: c1400
symbol: c1400
gene_biotype: protein_coding
description:
  Prophage lambda integrase; Int(Lambda); Escherichia coli K-12 ortholog: b1140; Escherichia coli O157:H7 ortholog: z1764; Belongs to the 'phage' integrase family.


ensembl_gene_id: c1404
symbol: ydfD
gene_biotype: protein_coding
description:
  Hypothetical protein ydfD; Escherichia coli K-12 ortholog: b1576; Escherichia coli O157:H7 ortholog: z6079.


ensembl_gene_id: c1405
symbol: dicB
gene_biotype: protein_coding
description:
  Division inhibition protein dicB; Escherichia coli K-12 ortholog: b1575; Escherichia coli O157:H7 ortholog: z6078.


ensembl_gene_id: c1407
symbol: ydfC
gene_biotype: protein_coding
description:
  Hypothetical protein ydfC; Escherichia coli K-12 ortholog: b1573; Escherichia coli O157:H7 ortholog: z6076.


ensembl_gene_id: c1408
symbol: ydfB
gene_biotype: protein_coding
description:
  Hypothetical protein ydfB; Escherichia coli K-12 ortholog: b1572; Escherichia coli O157:H7 ortholog: z1330.


ensembl_gene_id: c1409
symbol: ydfA
gene_biotype: protein_coding
description:
  Hypothetical protein ydfA; Escherichia coli K-12 ortholog: b1571; Escherichia coli O157:H7 ortholog: z2089.


ensembl_gene_id: c1410
symbol: c1410
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 90 to 139 of 139 are 72.00 pct identical to residues 54 to 103 of 103 from GenPept.129 : >dbj|BAB35364.1| (AP002556) putative transcriptional regulator [Escherichia coli O157:H7].


ensembl_gene_id: c1412
symbol: c1412
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 97 to 331 of 331 are 79.14 pct identical to residues 177 to 400 of 400 from GenPept.129 : >gb|AAG55470.1|AE005288_1 (AE005288) unknown protein encoded by cryptic prophage CP-933M [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1414
symbol: c1414
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 137 of 137 are 94.07 pct identical to residues 1 to 135 of 135 from GenPept.129 : >emb|CAD05603.1| (AL627272) putative bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhi].


ensembl_gene_id: c1417
symbol: c1417
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 58 of 58 are 86.20 pct identical to residues 21 to 78 of 78 from GenPept.129 : >dbj|BAB12674.1| (AP002527) yheA [Escherichia coli].


ensembl_gene_id: c1421
symbol: c1421
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 92 of 92 are 93.47 pct identical to residues 1 to 92 of 92 from GenPept.129 : >dbj|BAB34944.1| (AP002555) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c1422
symbol: c1422
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 59 of 59 are 69.49 pct identical to residues 1 to 59 of 107 from GenPept.129 : >gb|AAG57026.1|AE005422_1 (AE005422) unknown protein encoded within prophage CP-933U [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1423
symbol: c1423
gene_biotype: protein_coding
description:
  Hypothetical protein ydfU; Escherichia coli K-12 ortholog: b1560; Escherichia coli O157:H7 ortholog: z3116.


ensembl_gene_id: c1425
symbol: c1425
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 60 of 61 are 94.99 pct identical to residues 58 to 117 of 124 from GenPept.129 : >gb|AAG55477.1|AE005288_8 (AE005288) putative endonuclease of cryptic prophage CP-933M [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1429
symbol: ycgW
gene_biotype: protein_coding
description:
  Enhancing lycopene biosynthesis protein 1; Inhibits RpoS proteolysis by regulating RssB activity, thereby increasing the stability of the sigma stress factor RpoS during magnesium starvation; Belongs to the IraM/RssC family.


ensembl_gene_id: c1431
symbol: c1431
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 5 to 66 of 66 are 93.54 pct identical to residues 1 to 62 of 616 from GenPept.129 : >emb|CAC05558.1| (AJ251754) ORF616 [Escherichia coli].


ensembl_gene_id: c1432
symbol: c1432
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 8 to 53 of 53 are 86.95 pct identical to residues 572 to 617 of 617 from GenPept.129 : >gb|AAG57020.1|AE005421_8 (AE005421) unknown protein encoded within prophage CP-933U [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1433
symbol: c1433
gene_biotype: protein_coding
description:
  Lysis protein S homolog from lambdoid prophage DLP12; Escherichia coli K-12 ortholog: b0554; Escherichia coli O157:H7 ortholog: z3106.


ensembl_gene_id: c1434
symbol: ydfR
gene_biotype: protein_coding
description:
  Hypothetical protein ydfR; Escherichia coli K-12 ortholog: b1555; Escherichia coli O157:H7 ortholog: z2070.


ensembl_gene_id: c1436
symbol: c1436
gene_biotype: protein_coding
description:
  Probable lysozyme from lambdoid prophage Qin; Escherichia coli K-12 ortholog: b1554; Escherichia coli O157:H7 ortholog: z1796.


ensembl_gene_id: c1437
symbol: c1437
gene_biotype: protein_coding
description:
  Putative Rz endopeptidase from lambdoid prophage DLP12; Escherichia coli K-12 ortholog: b0556; Escherichia coli O157:H7 ortholog: z0961.


ensembl_gene_id: c1438
symbol: c1438
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 50 of 50 are 92.00 pct identical to residues 1 to 50 of 50 from GenPept.129 : >dbj|BAB34245.1| (AP002553) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c1439
symbol: c1439
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 185 of 186 are 74.59 pct identical to residues 1 to 183 of 184 from GenPept.129 : >gb|AAA82105.1| (L40418) alternate start at bp 59; ORF [Bacteriophage phi-80].


ensembl_gene_id: c1440
symbol: ydfO
gene_biotype: protein_coding
description:
  Hypothetical protein ydfO; Escherichia coli K-12 ortholog: b1549; Escherichia coli O157:H7 ortholog: z1879.


ensembl_gene_id: c1444
symbol: c1444
gene_biotype: protein_coding
description:
  Prophage Qin DNA packaging protein NU1 homolog; Escherichia coli K-12 ortholog: b1548; Escherichia coli O157:H7 ortholog: z2365.


ensembl_gene_id: c1452
symbol: c1452
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 17 to 143 of 143 are 40.15 pct identical to residues 1 to 124 of 124 from SwissProt.40 : >sp|P36276|YG78_BPP21 Hypothetical 13.5 kDa protein in GP7-GP8 intergenic region.


ensembl_gene_id: c1468
symbol: c1468
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 4 to 248 of 687 are 29.38 pct identical to residues 196 to 438 of 973 from GenPept.129 : >gb|AAG56007.1|AE005333_4 (AE005333) putative membrane protein of prophage CP-933X [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1475
symbol: ylcE
gene_biotype: protein_coding
description:
  Hypothetical protein ylcE; Escherichia coli K-12 ortholog: b0563; Escherichia coli O157:H7 ortholog: z1926.


ensembl_gene_id: c1476
symbol: potB
gene_biotype: protein_coding
description:
  Spermidine/putrescine transport system permease protein potB; Escherichia coli K-12 ortholog: b1125; Escherichia coli O157:H7 ortholog: z1830.


ensembl_gene_id: c1477
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine transport ATP-binding protein potA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.


ensembl_gene_id: c1479
symbol: pepT
gene_biotype: protein_coding
description:
  Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: c1480
symbol: ycfD
gene_biotype: protein_coding
description:
  Hypothetical protein ycfD; Escherichia coli K-12 ortholog: b1128; Escherichia coli O157:H7 ortholog: z1833.


ensembl_gene_id: c1483
symbol: c1483
gene_biotype: protein_coding
description:
  Putative integrase of prophage; Escherichia coli O157:H7 ortholog: z1835; Belongs to the 'phage' integrase family.


ensembl_gene_id: c1487
symbol: c1487
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 114 to 279 of 428 are 55.36 pct identical to residues 20 to 196 of 247 from GenPept.129 : >dbj|BAB34999.1| (AP002555) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c1488
symbol: c1488
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 61 of 76 are 52.54 pct identical to residues 2 to 60 of 63 from GenPept.129 : >dbj|BAB35002.1| (AP002555) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c1493
symbol: c1493
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 99 of 99 are 82.82 pct identical to residues 1 to 99 of 99 from GenPept.129 : >dbj|BAB35004.1| (AP002555) hypothetical protein [Escherichia coli O157:H7].


ensembl_gene_id: c1495
symbol: c1495
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 116 to 561 of 584 are 49.34 pct identical to residues 269 to 725 of 763 from GenPept.129 : >emb|CAC89726.1| (AJ414145) putative primase [Yersinia pestis].


ensembl_gene_id: c1500
symbol: c1500
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 6 to 105 of 111 are 36.63 pct identical to residues 13 to 110 of 115 from GenPept.129 : >gb|AAA32345.1| (M81255) capsid protein small subunit [Bacteriophage 21].


ensembl_gene_id: c1508
symbol: phoQ
gene_biotype: protein_coding
description:
  Sensor protein phoQ; Member of the two-component regulatory system PhoP/PhoQ involved in virulence, adaptation to low Mg(2+) environments and the control of acid resistance genes. In low periplasmic Mg(2+), PhoQ functions as a membrane-associated protein kinase that undergoes autophosphorylation and subsequently transfers the phosphate to PhoP, resulting in the expression of PhoP-activated genes (PAG) and repression of PhoP-repressed genes (PRG). In high periplasmic Mg(2+), acts as a protein phosphatase that dephosphorylates phospho-PhoP, which results in the repression of PG and may l [...]


ensembl_gene_id: c1509
symbol: phoP
gene_biotype: protein_coding
description:
  Transcriptional Regulatory protein phoP; Member of the two-component regulatory system PhoQ/PhoP involved in virulence, adaptation to low Mg(2+) environments and the control of acid resistance genes.


ensembl_gene_id: c1510
symbol: purB
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Escherichia coli K-12 ortholog: b1131; Escherichia coli O157:H7 ortholog: z1860.


ensembl_gene_id: c1511
symbol: ycfC
gene_biotype: protein_coding
description:
  Hypothetical protein ycfC; Negative regulator of phage lambda lysogenization. Contributes to the degradation of the phage regulatory protein CII. Acts probably by holding CII on the membrane surface, away from the target promoters, but close to the FtsH protease.


ensembl_gene_id: c1512
symbol: ycfB
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln), leading to the formation of s(2)U34, the first step of tRNA-mnm(5)s(2)U34 synthesis. Sulfur is provided by IscS, via a sulfur-relay system. Binds ATP and its substrate tRNAs; Belongs to the MnmA/TRMU family.


ensembl_gene_id: c1513
symbol: nudJ
gene_biotype: protein_coding
description:
  Putative Nudix hydrolase ymfB; Escherichia coli K-12 ortholog: b1134; Escherichia coli O157:H7 ortholog: z1863; Belongs to the Nudix hydrolase family. NudJ subfamily.


ensembl_gene_id: c1514
symbol: rluE
gene_biotype: protein_coding
description:
  Hypothetical protein; Responsible for synthesis of pseudouridine from uracil-2457 in 23S ribosomal RNA; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: c1517
symbol: icdA
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase (NADP); Escherichia coli K-12 ortholog: b1136; Escherichia coli O157:H7 ortholog: z1865.


ensembl_gene_id: c1519
symbol: c1519
gene_biotype: protein_coding
description:
  Prophage lambda integrase; Int(Lambda); Escherichia coli K-12 ortholog: b1140; Escherichia coli O157:H7 ortholog: z1866; Belongs to the 'phage' integrase family.


ensembl_gene_id: c1522
symbol: c1522
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 79 of 79 are 40.00 pct identical to residues 42 to 121 of 121 from GenPept.129 : >emb|CAC83521.1| (AJ298298) hypothetical protein [Bacteriophage P27].


ensembl_gene_id: c1524
symbol: c1524
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 201 of 246 are 49.42 pct identical to residues 1 to 257 of 317 from SwissProt.40 : >sp|Q03544|VEAA_BPP22 Eaa protein.


ensembl_gene_id: c1525
symbol: c1525
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 82 of 83 are 87.50 pct identical to residues 21 to 92 of 95 from GenPept.129 : >dbj|BAB87939.1| (AP004402) hypothetical protein [Stx2 converting bacteriophage I].


ensembl_gene_id: c1526
symbol: c1526
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 35 to 121 of 186 are 81.60 pct identical to residues 94 to 180 of 187 from GenPept.129 : >gb|AAG57028.1|AE005422_3 (AE005422) unknown protein encoded within prophage CP-933U [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1527
symbol: c1527
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 8 to 57 of 91 are 77.99 pct identical to residues 1 to 50 of 118 from GenPept.129 : >gb|AAG57254.1|AE005444_4 (AE005444) unknown protein encoded within prophage CP-933V [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1528
symbol: c1528
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 57 to 109 of 109 are 71.69 pct identical to residues 98 to 150 of 151 from GenPept.129 : >dbj|BAB12619.1| (AP002527) ycgB [Escherichia coli].


ensembl_gene_id: c1530
symbol: c1530
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 7 to 492 of 499 are 40.77 pct identical to residues 10 to 495 of 504 from SwissProt.40 : >sp|P55501|Y4JA_RHISN HYPOTHETICAL 57.2 KD PROTEIN Y4JA/Y4NE/Y4SE.


ensembl_gene_id: c1531
symbol: c1531
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 124 of 152 are 85.48 pct identical to residues 1 to 124 of 238 from GenPept.129 : >gb|AAK28855.1|AF335538_7 (AF335538) unknown [Bacteriophage HK620].


ensembl_gene_id: c1533
symbol: c1533
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 62 of 62 are 96.66 pct identical to residues 1 to 60 of 60 from GenPept.129 : >gb|AAL02051.1| (AY048746) orf60a protein [Red recombinase plasmid pKD46].


ensembl_gene_id: c1535
symbol: c1535
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 90 of 103 are 94.44 pct identical to residues 46 to 135 of 186 from MG1655 : b0538.


ensembl_gene_id: c1537
symbol: gamW
gene_biotype: protein_coding
description:
  Putative host-nuclease inhibitor protein Gam of bacteriphage; Escherichia coli O157:H7 ortholog: z1438.


ensembl_gene_id: c1538
symbol: c1538
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 50 of 50 are 95.99 pct identical to residues 1 to 50 of 50 from GenPept.129 : >dbj|BAB36422.1| (AP002560) host-nuclease inhibitor protein gam [Escherichia coli O157:H7].


ensembl_gene_id: c1539
symbol: c1539
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 47 of 47 are 97.87 pct identical to residues 1 to 47 of 47 from GenPept.129 : >gb|AAA96572.1| (J02459) kil(host-killing;54) [bacteriophage lambda].


ensembl_gene_id: c1540
symbol: c1540
gene_biotype: protein_coding
description:
  Lambda Regulatory protein CIII; Residues 1 to 54 of 54 are 98.14 pct identical to residues 1 to 54 of 54 from SwissProt.40 : >sp|P03044|RPC3_LAMBD REGULATORY PROTEIN CIII.


ensembl_gene_id: c1541
symbol: ea10
gene_biotype: protein_coding
description:
  Putative single-stranded DNA binding protein of prophage; The ea10 gene protein is believed to be involved in the production of the Tro phenotype. This phenotype is expressed when phages that possess a mutant cro gene and a thermolabile cI repressor gene are unable to propagate at restrictive temperatures. This inability is correlated with the shutoff of host macromolecular synthesis (By similarity).


ensembl_gene_id: c1542
symbol: c1542
gene_biotype: protein_coding
description:
  Lambda ant-restriction protein; Residues 1 to 66 of 66 are 98.48 pct identical to residues 1 to 66 of 66 from SwissProt.40 : >sp|P03703|VRAL_LAMBD Restriction inhibitor protein ral (Antirestriction protein).


ensembl_gene_id: c1546
symbol: c1546
gene_biotype: protein_coding
description:
  Repressor protein; Residues 1 to 140 of 140 are 97.14 pct identical to residues 30 to 169 of 169 from GenPept.129 : >dbj|BAA84306.1| (AP000363) similar to CI repressor of bacteriophage lambda [Bacteriophage VT2-Sa]; Belongs to the peptidase S24 family.


ensembl_gene_id: c1547
symbol: c1547
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 56 to 126 of 126 are 100.00 pct identical to residues 1 to 71 of 71 from GenPept.129 : >dbj|BAA84307.1| (AP000363) similar to C2 of bacteriophage L [Bacteriophage VT2-Sa].


ensembl_gene_id: c1554
symbol: ninB
gene_biotype: protein_coding
description:
  Unknown protein encoded within prophage; Escherichia coli O157:H7 ortholog: z3351; Belongs to the ninB family.


ensembl_gene_id: c1555
symbol: c1555
gene_biotype: protein_coding
description:
  Putative DNA N-6-adenine-methyltransferase of bacteriophage; Escherichia coli O157:H7 ortholog: z1454.


ensembl_gene_id: c1556
symbol: c1556
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 113 of 113 are 61.01 pct identical to residues 3 to 112 of 112 from SwissProt.40 : >sp|Q38665|NINX_BPP22 Putative protein ninX.


ensembl_gene_id: c1557
symbol: rus
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease rusA; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of CC dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC (By similarity); Belongs to the RusA family.


ensembl_gene_id: c1558
symbol: c1558
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 46 of 46 are 95.65 pct identical to residues 1 to 46 of 46 from SwissProt.40 : >sp|Q47272|YLCG_ECOLI Hypothetical protein ylcG in lambdoid DLP12 prophage region.


ensembl_gene_id: c1559
symbol: ybcQ
gene_biotype: protein_coding
description:
  Antitermination protein Q homolog from lambdoid prophage DLP12; Escherichia coli K-12 ortholog: b0551; Escherichia coli O157:H7 ortholog: z1786.


ensembl_gene_id: c1560
symbol: nmpC
gene_biotype: protein_coding
description:
  Outer membrane porin protein nmpC precursor; Escherichia coli K-12 ortholog: b0553; Escherichia coli O157:H7 ortholog: z2239; Belongs to the Gram-negative porin family.


ensembl_gene_id: c1561
symbol: essD
gene_biotype: protein_coding
description:
  Lysis protein S homolog from lambdoid prophage DLP12; Escherichia coli K-12 ortholog: b0554; Escherichia coli O157:H7 ortholog: z3340; Belongs to the lambda phage S protein family.


ensembl_gene_id: c1562
symbol: ybcS
gene_biotype: protein_coding
description:
  Probable lysozyme from lambdoid prophage DLP12; Escherichia coli K-12 ortholog: b0555; Escherichia coli O157:H7 ortholog: z0960.


ensembl_gene_id: c1563
symbol: c1563
gene_biotype: protein_coding
description:
  Putative Rz endopeptidase from lambdoid prophage DLP12; Escherichia coli K-12 ortholog: b0556; Escherichia coli O157:H7 ortholog: z1473.


ensembl_gene_id: c1564
symbol: ybcU
gene_biotype: protein_coding
description:
  Bor protein homolog from lambdoid prophage DLP12 precursor; Escherichia coli K-12 ortholog: b0557; Escherichia coli O157:H7 ortholog: z1878.


ensembl_gene_id: c1565
symbol: c1565
gene_biotype: protein_coding
description:
  Partial tonB-like membrane protein encoded within prophage; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: c1568
symbol: nohA
gene_biotype: protein_coding
description:
  Prophage Qin DNA packaging protein NU1 homolog; Involved in the initiation of the phage DNA packaging into the prohead. Processes replicating concatemeric DNA into pieces of unit length with cohesive ends (By similarity); Belongs to the terminase small subunit family.


ensembl_gene_id: c1570
symbol: c1570
gene_biotype: protein_coding
description:
  Putative DNA packaging protein of prophage; Escherichia coli O157:H7 ortholog: z2363; Belongs to the lambda phage gpW family.


ensembl_gene_id: c1575
symbol: c1575
gene_biotype: protein_coding
description:
  Putative capsid protein of prophage; Escherichia coli O157:H7 ortholog: z1888; Belongs to the lambda phage major capsid protein family.


ensembl_gene_id: c1576
symbol: c1576
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 17 to 140 of 140 are 100.00 pct identical to residues 1 to 124 of 124 from SwissProt.40 : >sp|P36276|YG78_BPP21 Hypothetical 13.5 kDa protein in GP7-GP8 intergenic region.


ensembl_gene_id: c1580
symbol: c1580
gene_biotype: protein_coding
description:
  Tail protein; Residues 1 to 53 of 54 are 96.22 pct identical to residues 1 to 53 of 256 from GenPept.129 : >gb|AAG55990.1|AE005331_3 (AE005331) putative tail component of prophage CP-933X [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1591
symbol: c1591
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 116 to 226 of 555 are 36.44 pct identical to residues 389 to 506 of 1122 from GenPept.129 : >gb|AAC74454.1| (AE000234) putative membrane protein [Escherichia coli K12].


ensembl_gene_id: c1592
symbol: c1592
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 3 to 82 of 84 are 48.23 pct identical to residues 65 to 149 of 206 from GenPept.129 : >gb|AAA96556.1| (J02459) orf206b [bacteriophage lambda].


ensembl_gene_id: c1597
symbol: sitD
gene_biotype: protein_coding
description:
  SitD protein; Residues 1 to 272 of 285 are 53.30 pct identical to residues 4 to 275 of 297 from SwissProt.40 : >sp|Q56955|YFED_YERPE Chelated iron transport system membrane protein yfeD.


ensembl_gene_id: c1598
symbol: sitC
gene_biotype: protein_coding
description:
  SitC protein; Residues 1 to 276 of 285 are 65.94 pct identical to residues 2 to 277 of 294 from SwissProt.40 : >sp|Q56954|YFEC_YERPE Chelated iron transport system membrane protein yfeC.


ensembl_gene_id: c1599
symbol: sitB
gene_biotype: protein_coding
description:
  SitB protein; Residues 7 to 263 of 275 are 62.03 pct identical to residues 11 to 276 of 296 from SwissProt.40 : >sp|Q56953|YFEB_YERPE Chelated iron transport system membrane protein yfeB.


ensembl_gene_id: c1600
symbol: sitA
gene_biotype: protein_coding
description:
  SitA protein; Residues 2 to 263 of 285 are 62.97 pct identical to residues 3 to 257 of 293 from SwissProt.40 : >sp|Q57449|Y362_HAEIN PUTATIVE PERIPLASMIC IRON-BINDING PROTEIN HI0362 PRECURSOR; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: c1602
symbol: c1602
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 50 of 50 are 98.00 pct identical to residues 5 to 54 of 54 from GenPept.129 : >gb|AAC48887.1| (AF017626) isocitrate dehydrogenase [Bacteriophage 21].


ensembl_gene_id: c1603
symbol: ycgX
gene_biotype: protein_coding
description:
  Hypothetical protein ycgX; Escherichia coli K-12 ortholog: b1161; Escherichia coli O157:H7 ortholog: z1879.


ensembl_gene_id: c1604
symbol: ycgE
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ycgE; Escherichia coli K-12 ortholog: b1162; Escherichia coli O157:H7 ortholog: z3376.


ensembl_gene_id: c1609
symbol: ymgB
gene_biotype: protein_coding
description:
  Hypothetical protein ymgB; Regulates expression of genes involved in acid-resistance and biofilm formation. May be a non-specific DNA-binding protein that binds genes and/or intergenic regions via a geometric recognition (By similarity); Belongs to the AriR family.


ensembl_gene_id: c1611
symbol: c1611
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 13 to 83 of 84 are 98.59 pct identical to residues 1 to 71 of 72 from SwissProt.40 : >sp|P58034|YMGF_ECOLI Hypothetical protein ymgF.


ensembl_gene_id: c1615
symbol: c1615
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 47 of 175 are 97.87 pct identical to residues 42 to 88 of 338 from MG1655 : b1170.


ensembl_gene_id: c1617
symbol: ymgG
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Escherichia coli K-12 ortholog: b1172; Belongs to the UPF0757 family.


ensembl_gene_id: c1619
symbol: c1619
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 108 of 108 are 94.44 pct identical to residues 1462 to 1569 of 1569 from MG1655 : b2647.


ensembl_gene_id: c1621
symbol: minE
gene_biotype: protein_coding
description:
  Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell (By similarity).


ensembl_gene_id: c1622
symbol: minD
gene_biotype: protein_coding
description:
  Septum site-determining protein minD; ATPase required for the correct placement of the division site. Cell division inhibitors MinC and MinD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings (By similarity).


ensembl_gene_id: c1623
symbol: minC
gene_biotype: protein_coding
description:
  Septum site-determining protein minC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: c1625
symbol: ycgJ
gene_biotype: protein_coding
description:
  Hypothetical protein ycgJ precursor; Escherichia coli K-12 ortholog: b1177; Escherichia coli O157:H7 ortholog: z1939.


ensembl_gene_id: c1626
symbol: ycgK
gene_biotype: protein_coding
description:
  Protein ycgK precursor; Escherichia coli K-12 ortholog: b1178; Escherichia coli O157:H7 ortholog: z1940.


ensembl_gene_id: c1629
symbol: ycgN
gene_biotype: protein_coding
description:
  Hypothetical protein ycgN; Escherichia coli K-12 ortholog: b1181; Escherichia coli O157:H7 ortholog: z1943; Belongs to the UPF0260 family.


ensembl_gene_id: c1630
symbol: c1630
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 93 of 93 are 92.47 pct identical to residues 213 to 305 of 305 from MG1655 : b1182; Belongs to the hemolysin E family.


ensembl_gene_id: c1631
symbol: umuD
gene_biotype: protein_coding
description:
  UmuD protein; Escherichia coli K-12 ortholog: b1183; Escherichia coli O157:H7 ortholog: z1946; bifunctional; UmuD' protein; Belongs to the peptidase S24 family.


ensembl_gene_id: c1632
symbol: umuC
gene_biotype: protein_coding
description:
  UmuC protein; Escherichia coli K-12 ortholog: b1184; Escherichia coli O157:H7 ortholog: z1947; Belongs to the DNA polymerase type-Y family.


ensembl_gene_id: c1633
symbol: dsbB
gene_biotype: protein_coding
description:
  Disulfide bond formation protein B; Required for disulfide bond formation in some periplasmic proteins such as PhoA or OmpA. Acts by oxidizing the DsbA protein (By similarity); Belongs to the DsbB family.


ensembl_gene_id: c1634
symbol: nhaB
gene_biotype: protein_coding
description:
  Na(+)/H(+) antiporter 2; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family.


ensembl_gene_id: c1637
symbol: ycgB
gene_biotype: protein_coding
description:
  Hypothetical protein ycgB; Escherichia coli K-12 ortholog: b1188; Escherichia coli O157:H7 ortholog: z1951.


ensembl_gene_id: c1638
symbol: dadA
gene_biotype: protein_coding
description:
  D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.


ensembl_gene_id: c1639
symbol: dadX
gene_biotype: protein_coding
description:
  Alanine racemase, catabolic; Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by DadA.


ensembl_gene_id: c1640
symbol: ycgO
gene_biotype: protein_coding
description:
  Putative Na(+)/H(+) exchanger ycgO; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily.


ensembl_gene_id: c1641
symbol: ldcA
gene_biotype: protein_coding
description:
  Muramoyltetrapeptide carboxypeptidase; Releases the terminal D-alanine residue from the cytoplasmic tetrapeptide recycling product L-Ala-gamma-D-Glu-meso-Dap-D-Ala. Can also cleave D-Ala from murein derivatives containing the tetrapeptide, i.e. MurNAc-tetrapeptide, UDP-MurNAc-tetrapeptide, GlcNAc-MurNAc- tetrapeptide, and GlcNAc-anhMurNAc-tetrapeptide. Does not act on murein sacculi or cross-linked muropeptides. The tripeptides produced by the LcdA reaction can then be reused as peptidoglycan building blocks; LcdA is thereby involved in murein recycling (By similarity); Belongs to the  [...]


ensembl_gene_id: c1643
symbol: mltE
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase E; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division. Preferentially cleaves at a distance of more than two disaccharide units from the ends of the glycan chain.


ensembl_gene_id: c1644
symbol: ycgR
gene_biotype: protein_coding
description:
  Hypothetical protein ycgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.


ensembl_gene_id: c1645
symbol: ymgE
gene_biotype: protein_coding
description:
  Transglycosylase associated protein; Escherichia coli K-12 ortholog: b1195; Escherichia coli O157:H7 ortholog: z1960.


ensembl_gene_id: c1646
symbol: prrA
gene_biotype: protein_coding
description:
  Putative outer membrane receptor, probably tonB dependent; Escherichia coli O157:H7 ortholog: z1961.


ensembl_gene_id: c1650
symbol: c1650
gene_biotype: protein_coding
description:
  Putative iron compound ABC transporter, ATP-binding protein; Escherichia coli O157:H7 ortholog: z1964.


ensembl_gene_id: c1651
symbol: fecD
gene_biotype: protein_coding
description:
  Iron(III) dicitrate transport system permease protein fecD; Escherichia coli K-12 ortholog: b4288; Escherichia coli O157:H7 ortholog: z1965; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: c1654
symbol: treA
gene_biotype: protein_coding
description:
  Periplasmic trehalase precursor; Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system; Belongs to the glycosyl hydrolase 37 family.


ensembl_gene_id: c1656
symbol: ycgC
gene_biotype: protein_coding
description:
  Hypothetical protein ycgC; Escherichia coli K-12 ortholog: b1198; Escherichia coli O157:H7 ortholog: z1969; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: c1658
symbol: ycgT
gene_biotype: protein_coding
description:
  Hypothetical protein ycgT; Escherichia coli K-12 ortholog: b1200; Escherichia coli O157:H7 ortholog: z1971.


ensembl_gene_id: c1661
symbol: ychF
gene_biotype: protein_coding
description:
  Probable GTP-binding protein ychF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: c1662
symbol: pth
gene_biotype: protein_coding
description:
  Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: c1663
symbol: ychH
gene_biotype: protein_coding
description:
  Hypothetical protein ychH; Escherichia coli K-12 ortholog: b1205; Escherichia coli O157:H7 ortholog: z1976.


ensembl_gene_id: c1664
symbol: ychM
gene_biotype: protein_coding
description:
  Putative sulfate transporter ychM; Escherichia coli K-12 ortholog: b1206; Escherichia coli O157:H7 ortholog: z1977.


ensembl_gene_id: c1665
symbol: prsA
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: c1666
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol; Belongs to the GHMP kinase family. IspE subfamily.


ensembl_gene_id: c1667
symbol: hemM
gene_biotype: protein_coding
description:
  Outer-membrane lipoprotein lolB precursor; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.


ensembl_gene_id: c1668
symbol: hemA
gene_biotype: protein_coding
description:
  Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: c1669
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: c1670
symbol: hemK
gene_biotype: protein_coding
description:
  Protein methyltransferase hemK; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: c1674
symbol: kdsA
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxyphosphooctonate aldolase; Escherichia coli K-12 ortholog: b1215; Escherichia coli O157:H7 ortholog: z1986; Belongs to the KdsA family.


ensembl_gene_id: c1676
symbol: chaA
gene_biotype: protein_coding
description:
  Calcium/proton antiporter; Escherichia coli K-12 ortholog: b1216; Escherichia coli O157:H7 ortholog: z1991.


ensembl_gene_id: c1677
symbol: chaB
gene_biotype: protein_coding
description:
  Cation transport regulator chaB; Might be a regulator of the sodium-potassium/proton antiporter ChaA; Belongs to the ChaB family.


ensembl_gene_id: c1678
symbol: chaC
gene_biotype: protein_coding
description:
  Cation transport protein chaC; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.


ensembl_gene_id: c1679
symbol: ychN
gene_biotype: protein_coding
description:
  Hypothetical protein ychN; Escherichia coli K-12 ortholog: b1219; Escherichia coli O157:H7 ortholog: z1994.


ensembl_gene_id: c1680
symbol: ychP
gene_biotype: protein_coding
description:
  Hypothetical protein ychO; Escherichia coli K-12 ortholog: b1220; Escherichia coli O157:H7 ortholog: z1995.


ensembl_gene_id: c1681
symbol: narL
gene_biotype: protein_coding
description:
  Nitrate/nitrite response regulator protein narL; This protein activates the expression of the nitrate reductase (narGHJI) and formate dehydrogenase-N (fdnGHI) operons and represses the transcription of the fumarate reductase (frdABCD) operon in response to a nitrate/nitrite induction signal transmitted by either the NarX or NarQ proteins.


ensembl_gene_id: c1682
symbol: narX
gene_biotype: protein_coding
description:
  Nitrate/nitrite sensor protein narX; Escherichia coli K-12 ortholog: b1222; Escherichia coli O157:H7 ortholog: z1998.


ensembl_gene_id: c1684
symbol: narK
gene_biotype: protein_coding
description:
  Nitrite facilitator 1; Escherichia coli K-12 ortholog: b1223; Escherichia coli O157:H7 ortholog: z2000.


ensembl_gene_id: c1685
symbol: narG
gene_biotype: protein_coding
description:
  Respiratory nitrate reductase 1 alpha chain; Escherichia coli K-12 ortholog: b1224; Escherichia coli O157:H7 ortholog: z2001; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: c1686
symbol: narH
gene_biotype: protein_coding
description:
  Respiratory nitrate reductase 1 beta chain; Escherichia coli K-12 ortholog: b1225; Escherichia coli O157:H7 ortholog: z2002.


ensembl_gene_id: c1687
symbol: narJ
gene_biotype: protein_coding
description:
  Respiratory nitrate reductase 1 delta chain; Escherichia coli K-12 ortholog: b1226; Escherichia coli O157:H7 ortholog: z2003.


ensembl_gene_id: c1688
symbol: narI
gene_biotype: protein_coding
description:
  Respiratory nitrate reductase 1 gamma chain; Escherichia coli K-12 ortholog: b1227; Escherichia coli O157:H7 ortholog: z2004.


ensembl_gene_id: c1689
symbol: c1689
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 176 to 347 of 347 are 80.81 pct identical to residues 4 to 175 of 175 from GenPept.129 : >emb|CAA21325.1| (AL031866) ORF3, len: 175 aa,similar to C-terminal end of XCU70053_2 Xanthomonas campestris gumO (435 aa), possible frameshift, this ORF is the prolongation of ORF 4 also similar to XCU70053_2. Fasta score: opt: 367, E(): 1.8e-17 39.5%identity in 172 aa overlap [Yersinia pestis].


ensembl_gene_id: c1691
symbol: c1691
gene_biotype: protein_coding
description:
  Putative gumP homolog; Residues 1 to 268 of 268 are 69.02 pct identical to residues 1 to 268 of 268 from GenPept.129 : >emb|CAC90793.1| (AJ414150) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c1692
symbol: c1692
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 424 of 428 are 66.03 pct identical to residues 1 to 424 of 428 from GenPept.129 : >emb|CAC90794.1| (AJ414150) putative coenzyme synthetase [Yersinia pestis].


ensembl_gene_id: c1693
symbol: c1693
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 24 to 188 of 204 are 27.52 pct identical to residues 23 to 198 of 219 from GenPept.129 : >gb|AAK79457.1|AE007659_12 (AE007659) Protein of phosphatidic acid phosphatase family, YNBD E.coli ortholog [Clostridium acetobutylicum].


ensembl_gene_id: c1694
symbol: c1694
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 12 to 235 of 374 are 32.46 pct identical to residues 19 to 246 of 317 from GenPept.129 : >dbj|BAB48523.1| (AP002996) hypothetical protein [Mesorhizobium loti].


ensembl_gene_id: c1695
symbol: c1695
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 23 to 359 of 363 are 24.20 pct identical to residues 19 to 357 of 359 from GenPept.129 : >dbj|BAA18502.1| (D90914) delta-6 desaturase [Synechocystis sp. PCC 6803].


ensembl_gene_id: c1696
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: c1697
symbol: ychJ
gene_biotype: protein_coding
description:
  Hypothetical protein ychJ; Escherichia coli K-12 ortholog: b1233; Escherichia coli O157:H7 ortholog: z2009; Belongs to the UPF0225 family.


ensembl_gene_id: c1698
symbol: ychK
gene_biotype: protein_coding
description:
  Hypothetical protein ychK; Escherichia coli K-12 ortholog: b1234; Escherichia coli O157:H7 ortholog: z2010.


ensembl_gene_id: c1699
symbol: hnr
gene_biotype: protein_coding
description:
  Hnr protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.


ensembl_gene_id: c1700
symbol: galU
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase; May play a role in stationary phase survival; Belongs to the UDPGP type 2 family.


ensembl_gene_id: c1701
symbol: hns
gene_biotype: protein_coding
description:
  DNA-binding protein H-NS; A DNA-binding protein implicated in transcriptional repression and chromosome organization and compaction. Binds nucleation sites in AT-rich DNA and bridges them, forming higher-order nucleoprotein complexes and condensing the chromosome. As many horizontally transferred genes are AT-rich, it plays a central role in silencing foreign genes. A subset of genes are repressed by H-NS in association with other proteins (By similarity).


ensembl_gene_id: c1705
symbol: adhE
gene_biotype: protein_coding
description:
  Aldehyde-alcohol dehydrogenase; Escherichia coli K-12 ortholog: b1241; Escherichia coli O157:H7 ortholog: z2016; multifunctional; Alcohol dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; Pyruvate-formate-lyase deactivase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.


ensembl_gene_id: c1706
symbol: ychE
gene_biotype: protein_coding
description:
  Hypothetical protein yhcE; Escherichia coli K-12 ortholog: b1242; Escherichia coli O157:H7 ortholog: z2017.


ensembl_gene_id: c1707
symbol: oppA
gene_biotype: protein_coding
description:
  Periplasmic oligopeptide-binding protein precursor; Escherichia coli K-12 ortholog: b1243; Escherichia coli O157:H7 ortholog: z2019.


ensembl_gene_id: c1708
symbol: oppB
gene_biotype: protein_coding
description:
  Oligopeptide transport system permease protein oppB; Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.


ensembl_gene_id: c1709
symbol: oppC
gene_biotype: protein_coding
description:
  Oligopeptide transport system permease protein oppC; Escherichia coli K-12 ortholog: b1245; Escherichia coli O157:H7 ortholog: z2021.


ensembl_gene_id: c1710
symbol: oppD
gene_biotype: protein_coding
description:
  Oligopeptide transport ATP-binding protein oppD; Escherichia coli K-12 ortholog: b1246; Escherichia coli O157:H7 ortholog: z2022; Belongs to the ABC transporter superfamily.


ensembl_gene_id: c1711
symbol: oppF
gene_biotype: protein_coding
description:
  Oligopeptide transport ATP-binding protein oppF; Escherichia coli K-12 ortholog: b1247; Escherichia coli O157:H7 ortholog: z2023; Belongs to the ABC transporter superfamily.


ensembl_gene_id: c1712
symbol: yciU
gene_biotype: protein_coding
description:
  Hypothetical protein yciU; Escherichia coli K-12 ortholog: b1248; Escherichia coli O157:H7 ortholog: z2024; Belongs to the UPF0263 family.


ensembl_gene_id: c1713
symbol: cls
gene_biotype: protein_coding
description:
  Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: c1715
symbol: kch
gene_biotype: protein_coding
description:
  Putative potassium channel protein; Escherichia coli K-12 ortholog: b1250; Escherichia coli O157:H7 ortholog: z2028.


ensembl_gene_id: c1717
symbol: tonB
gene_biotype: protein_coding
description:
  TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: c1719
symbol: yciA
gene_biotype: protein_coding
description:
  Putative acyl-CoA thioester hydrolase yciA; Catalyzes the hydrolysis of the thioester bond in palmitoyl- CoA and malonyl-CoA.


ensembl_gene_id: c1720
symbol: ispZ
gene_biotype: protein_coding
description:
  Probable intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: c1721
symbol: yciC
gene_biotype: protein_coding
description:
  Hypothetical protein yciC; Escherichia coli K-12 ortholog: b1255; Escherichia coli O157:H7 ortholog: z2033.


ensembl_gene_id: c1722
symbol: ompW
gene_biotype: protein_coding
description:
  Outer membrane protein W precursor; Escherichia coli K-12 ortholog: b1256; Escherichia coli O157:H7 ortholog: z2034.


ensembl_gene_id: c1725
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: c1726
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: c1729
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate synthase component II; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: c1730
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Escherichia coli K-12 ortholog: b1264; Escherichia coli O157:H7 ortholog: z2546.


ensembl_gene_id: c1732
symbol: yciO
gene_biotype: protein_coding
description:
  Protein yciO; Escherichia coli K-12 ortholog: b1267; Escherichia coli O157:H7 ortholog: z2543; Belongs to the SUA5 family.


ensembl_gene_id: c1734
symbol: yciL
gene_biotype: protein_coding
description:
  Hypothetical protein yciL; Responsible for synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: c1735
symbol: btuR
gene_biotype: protein_coding
description:
  COB(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids (By similarity).


ensembl_gene_id: c1736
symbol: yciK
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase yciK; Escherichia coli K-12 ortholog: b1271; Escherichia coli O157:H7 ortholog: z2539.


ensembl_gene_id: c1737
symbol: sohB
gene_biotype: protein_coding
description:
  Possible protease sohB; Escherichia coli K-12 ortholog: b1272; Escherichia coli O157:H7 ortholog: z2538.


ensembl_gene_id: c1738
symbol: c1738
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 152 of 152 are 95.39 pct identical to residues 1 to 152 of 152 from SwissProt.40 : >sp|Q57334|T200_SALTY Transposase for insertion sequence element IS200.


ensembl_gene_id: c1741
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: c1742
symbol: cysB
gene_biotype: protein_coding
description:
  Cys regulon transcriptional activator; This protein is a positive regulator of gene expression for the cysteine regulon. The inducer for CysB is N-acetylserine (By similarity).


ensembl_gene_id: c1746
symbol: ribA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.


ensembl_gene_id: c1748
symbol: yciS
gene_biotype: protein_coding
description:
  Hypothetical protein yciS; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.


ensembl_gene_id: c1749
symbol: yciM
gene_biotype: protein_coding
description:
  Hypothetical protein yciM precursor; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.


ensembl_gene_id: c1750
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: c1753
symbol: osmB
gene_biotype: protein_coding
description:
  Osmotically inducible lipoprotein B precursor; Provides resistance to osmotic stress. May be important for stationary-phase survival (By similarity).


ensembl_gene_id: c1754
symbol: yciT
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yciT; Escherichia coli K-12 ortholog: b1284; Escherichia coli O157:H7 ortholog: z2521.


ensembl_gene_id: c1755
symbol: yciZ
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Escherichia coli O157:H7 ortholog: z2519; Belongs to the UPF0509 family.


ensembl_gene_id: c1756
symbol: yciR
gene_biotype: protein_coding
description:
  Hypothetical protein yciR; Escherichia coli K-12 ortholog: b1285; Escherichia coli O157:H7 ortholog: z2516.


ensembl_gene_id: c1757
symbol: rnb
gene_biotype: protein_coding
description:
  Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction.


ensembl_gene_id: c1758
symbol: yciW
gene_biotype: protein_coding
description:
  Hypothetical protein yciW; Escherichia coli K-12 ortholog: b1287; Escherichia coli O157:H7 ortholog: z2513.


ensembl_gene_id: c1759
symbol: fabI
gene_biotype: protein_coding
description:
  Enoyl-[acyl-carrier-protein] reductase (NADH); Escherichia coli K-12 ortholog: b1288; Escherichia coli O157:H7 ortholog: z2512.


ensembl_gene_id: c1761
symbol: c1761
gene_biotype: protein_coding
description:
  Acriflavine resistance protein A precursor; Escherichia coli K-12 ortholog: b0463; Escherichia coli O157:H7 ortholog: z2509; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: c1764
symbol: c1764
gene_biotype: protein_coding
description:
  Acriflavine resistance protein B; Escherichia coli K-12 ortholog: b0462; Escherichia coli O157:H7 ortholog: z2508.


ensembl_gene_id: c1766
symbol: c1766
gene_biotype: protein_coding
description:
  Putative membrane transport protein; Residues 1 to 387 of 387 are 98.96 pct identical to residues 1 to 387 of 387 from GenPept.129 : >dbj|BAB35289.1| (AP002556) putative membrane transport protein [Escherichia coli O157:H7].


ensembl_gene_id: c1767
symbol: sapF
gene_biotype: protein_coding
description:
  Peptide transport system ATP-binding protein sapF; Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides; Belongs to the ABC transporter superfamily.


ensembl_gene_id: c1768
symbol: sapD
gene_biotype: protein_coding
description:
  Peptide transport system ATP-binding protein sapD; Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides; Belongs to the ABC transporter superfamily.


ensembl_gene_id: c1769
symbol: sapC
gene_biotype: protein_coding
description:
  Peptide transport system permease protein sapC; Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.


ensembl_gene_id: c1770
symbol: sapB
gene_biotype: protein_coding
description:
  Peptide transport system permease protein sapB; Escherichia coli K-12 ortholog: b1293; Escherichia coli O157:H7 ortholog: z2496.


ensembl_gene_id: c1771
symbol: sapA
gene_biotype: protein_coding
description:
  Peptide transport periplasmic protein sapA precursor; Escherichia coli K-12 ortholog: b1294; Escherichia coli O157:H7 ortholog: z2494.


ensembl_gene_id: c1772
symbol: ymjA
gene_biotype: protein_coding
description:
  Hypothetical protein ymjA; Escherichia coli K-12 ortholog: b1295; Escherichia coli O157:H7 ortholog: z2493.


ensembl_gene_id: c1773
symbol: pspF
gene_biotype: protein_coding
description:
  Psp operon transcriptional activator; Escherichia coli K-12 ortholog: b1303; Escherichia coli O157:H7 ortholog: z2484.


ensembl_gene_id: c1774
symbol: pspA
gene_biotype: protein_coding
description:
  Phage shock protein A; Escherichia coli K-12 ortholog: b1304; Escherichia coli O157:H7 ortholog: z2482.


ensembl_gene_id: c1775
symbol: pspB
gene_biotype: protein_coding
description:
  Phage shock protein B; The phage shock protein (psp) operon (pspABCDE) may play a significant role in the competition for survival under nutrient- or energy-limited conditions. PspB is involved in transcription regulation (By similarity); Belongs to the PspB family.


ensembl_gene_id: c1777
symbol: pspC
gene_biotype: protein_coding
description:
  Phage shock protein C; The phage shock protein (psp) operon (pspABCDE) may play a significant role in the competition for survival under nutrient- or energy-limited conditions. PspC is involved in transcription regulation (By similarity); Belongs to the phageshock PspC family.


ensembl_gene_id: c1778
symbol: pspD
gene_biotype: protein_coding
description:
  Phage shock protein D; Escherichia coli K-12 ortholog: b1307; Escherichia coli O157:H7 ortholog: z2478.


ensembl_gene_id: c1779
symbol: pspE
gene_biotype: protein_coding
description:
  Phage shock protein E precursor; Escherichia coli K-12 ortholog: b1308; Escherichia coli O157:H7 ortholog: z2477.


ensembl_gene_id: c1780
symbol: ycjM
gene_biotype: protein_coding
description:
  Putative sucrose phosphorylase; Escherichia coli K-12 ortholog: b1309; Escherichia coli O157:H7 ortholog: z2475.


ensembl_gene_id: c1782
symbol: ycjN
gene_biotype: protein_coding
description:
  Putative ABC transporter Periplasmic binding protein ycjN precursor; Escherichia coli K-12 ortholog: b1310.


ensembl_gene_id: c1783
symbol: ycjO
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein ycjO; Escherichia coli K-12 ortholog: b1311; Escherichia coli O157:H7 ortholog: z2472.


ensembl_gene_id: c1784
symbol: ycjP
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein ycjP; Escherichia coli K-12 ortholog: b1312; Escherichia coli O157:H7 ortholog: z2471.


ensembl_gene_id: c1785
symbol: ycjQ
gene_biotype: protein_coding
description:
  Hypothetical zinc-type alcohol dehydrogenase-like protein ycjQ; Escherichia coli K-12 ortholog: b1313; Escherichia coli O157:H7 ortholog: z2470.


ensembl_gene_id: c1786
symbol: ycjR
gene_biotype: protein_coding
description:
  Hypothetical protein ycjR; Escherichia coli K-12 ortholog: b1314; Escherichia coli O157:H7 ortholog: z2469.


ensembl_gene_id: c1787
symbol: ycjS
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ycjS; Escherichia coli K-12 ortholog: b1315; Escherichia coli O157:H7 ortholog: z2468.


ensembl_gene_id: c1788
symbol: ycjT
gene_biotype: protein_coding
description:
  Hypothetical transport protein ycjT; Escherichia coli K-12 ortholog: b1316; Escherichia coli O157:H7 ortholog: z2467.


ensembl_gene_id: c1789
symbol: ycjU
gene_biotype: protein_coding
description:
  Putative beta-phosphoglucomutase; Escherichia coli K-12 ortholog: b1317; Escherichia coli O157:H7 ortholog: z2465.


ensembl_gene_id: c1790
symbol: ycjV
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein ycjV; Escherichia coli K-12 ortholog: b1318; Escherichia coli O157:H7 ortholog: z2463; Belongs to the ABC transporter superfamily.


ensembl_gene_id: c1791
symbol: ompG
gene_biotype: protein_coding
description:
  Outer membrane protein G precursor; Escherichia coli K-12 ortholog: b1319; Escherichia coli O157:H7 ortholog: z2462.


ensembl_gene_id: c1792
symbol: ycjW
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ycjW; Escherichia coli K-12 ortholog: b1320; Escherichia coli O157:H7 ortholog: z2461.


ensembl_gene_id: c1793
symbol: ycjX
gene_biotype: protein_coding
description:
  Hypothetical protein ycjX; Escherichia coli K-12 ortholog: b1321; Escherichia coli O157:H7 ortholog: z2458.


ensembl_gene_id: c1794
symbol: ycjF
gene_biotype: protein_coding
description:
  Hypothetical protein ycjF; Escherichia coli K-12 ortholog: b1322; Escherichia coli O157:H7 ortholog: z2456.


ensembl_gene_id: c1795
symbol: tyrR
gene_biotype: protein_coding
description:
  Transcriptional Regulatory protein tyrR; Escherichia coli K-12 ortholog: b1323; Escherichia coli O157:H7 ortholog: z2454.


ensembl_gene_id: c1796
symbol: tpx
gene_biotype: protein_coding
description:
  Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.


ensembl_gene_id: c1797
symbol: ycjG
gene_biotype: protein_coding
description:
  Hypothetical protein ycjG; Escherichia coli K-12 ortholog: b1325; Escherichia coli O157:H7 ortholog: z2450.


ensembl_gene_id: c1801
symbol: c1801
gene_biotype: protein_coding
description:
  Hypothetical protein ycjY; Escherichia coli K-12 ortholog: b1327; Escherichia coli O157:H7 ortholog: z2442.


ensembl_gene_id: c1803
symbol: mppA
gene_biotype: protein_coding
description:
  Periplasmic murein peptide-binding protein precursor; Escherichia coli K-12 ortholog: b1329; Escherichia coli O157:H7 ortholog: z2438.


ensembl_gene_id: c1804
symbol: ynaI
gene_biotype: protein_coding
description:
  Hypothetical protein ynaI; Escherichia coli K-12 ortholog: b1330; Escherichia coli O157:H7 ortholog: z2437.


ensembl_gene_id: c1805
symbol: ynaJ
gene_biotype: protein_coding
description:
  Hypothetical protein ynaJ; Escherichia coli K-12 ortholog: b1332; Escherichia coli O157:H7 ortholog: z2436.


ensembl_gene_id: c1806
symbol: ydaA
gene_biotype: protein_coding
description:
  Protein ydaA; Required for resistance to DNA-damaging agents. Belongs to the universal stress protein A family.


ensembl_gene_id: c1807
symbol: fnr
gene_biotype: protein_coding
description:
  Fumarate and nitrate reduction Regulatory protein; Global transcription factor that controls the expression of over 100 target genes in response to anoxia. It facilitates the adaptation to anaerobic growth conditions by regulating the expression of gene products that are involved in anaerobic energy metabolism. When the terminal electron acceptor, O(2), is no longer available, it represses the synthesis of enzymes involved in aerobic respiration and increases the synthesis of enzymes required for anaerobic respiration (By similarity).


ensembl_gene_id: c1808
symbol: ogt
gene_biotype: protein_coding
description:
  Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: c1809
symbol: c1809
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 14 to 63 of 63 are 75.92 pct identical to residues 179 to 230 of 230 from GenPept.129 : >gb|AAG56464.1|AE005372_9 (AE005372) partial putative pump protein; disrupted by IS629 [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1810
symbol: c1810
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 10 to 258 of 271 are 35.34 pct identical to residues 18 to 260 of 268 from GenPept.129 : >emb|CAD16771.1| (AL646073) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum].


ensembl_gene_id: c1811
symbol: c1811
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 14 to 89 of 102 are 51.31 pct identical to residues 37 to 111 of 367 from GenPept.129 : >dbj|BAB49683.1| (AP003000) probable secretion protein [Mesorhizobium loti].


ensembl_gene_id: c1812
symbol: c1812
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 126 of 132 are 46.03 pct identical to residues 378 to 503 of 518 from GenPept.129 : >dbj|BAB49682.1| (AP003000) probable transporter [Mesorhizobium loti].


ensembl_gene_id: c1814
symbol: ydaL
gene_biotype: protein_coding
description:
  Hypothetical protein ydaL; Escherichia coli K-12 ortholog: b1340; Escherichia coli O157:H7 ortholog: z2422.


ensembl_gene_id: c1815
symbol: ydaM
gene_biotype: protein_coding
description:
  Hypothetical protein ydaM; Escherichia coli K-12 ortholog: b1341; Escherichia coli O157:H7 ortholog: z2421.


ensembl_gene_id: c1816
symbol: ydaN
gene_biotype: protein_coding
description:
  Hypothetical protein ydaN; Mediates efflux of zinc ions; Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.


ensembl_gene_id: c1817
symbol: dbpA
gene_biotype: protein_coding
description:
  ATP-independent RNA helicase dbpA; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes.


ensembl_gene_id: c1818
symbol: ydaO
gene_biotype: protein_coding
description:
  Hypothetical protein ydaO; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.


ensembl_gene_id: c1819
symbol: c1819
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 27 to 102 of 102 are 98.68 pct identical to residues 336 to 411 of 411 from MG1655 : b1345.


ensembl_gene_id: c1820
symbol: c1820
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 4 to 90 of 122 are 72.41 pct identical to residues 18 to 104 of 282 from GenPept.129 : >gb|AAL21744.1| (AE008830) Salmonella iron transporter: fur regulated [Salmonella typhimurium LT2].


ensembl_gene_id: c1821
symbol: ynaF
gene_biotype: protein_coding
description:
  Unknown protein 2D_000B3L from 2D-page; Escherichia coli K-12 ortholog: b1376; Escherichia coli O157:H7 ortholog: z2335.


ensembl_gene_id: c1822
symbol: ompN
gene_biotype: protein_coding
description:
  Outer membrane protein N precursor; Porin ompN; Escherichia coli K-12 ortholog: b1377; Escherichia coli O157:H7 ortholog: z2334.


ensembl_gene_id: c1823
symbol: ydbK
gene_biotype: protein_coding
description:
  Probable pyruvate-flavodoxin oxidoreductase; Escherichia coli K-12 ortholog: b1378; Escherichia coli O157:H7 ortholog: z2332.


ensembl_gene_id: c1824
symbol: c1824
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 18 to 85 of 111 are 52.94 pct identical to residues 2 to 69 of 99 from GenPept.129 : >gb|AAL20568.1| (AE008773) putative reverse transcriptase [Salmonella typhimurium LT2].


ensembl_gene_id: c1825
symbol: ydbJ
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 51 of 51 are 100.00 pct identical to residues 1 to 51 of 51 from GenPept.129 : >dbj|BAA14988.1| (D90776) ORF_ID:o264#6; similar to [SwissProt Accession Number P52646] [Escherichia coli].


ensembl_gene_id: c1826
symbol: hslJ
gene_biotype: protein_coding
description:
  Heat shock protein hslJ; Escherichia coli K-12 ortholog: b1379; Escherichia coli O157:H7 ortholog: z2330.


ensembl_gene_id: c1827
symbol: ldhA
gene_biotype: protein_coding
description:
  D-lactate dehydrogenase; Escherichia coli K-12 ortholog: b1380; Escherichia coli O157:H7 ortholog: z2329; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: c1828
symbol: ydbH
gene_biotype: protein_coding
description:
  Hypothetical protein ydbH; Escherichia coli K-12 ortholog: b1381; Escherichia coli O157:H7 ortholog: z2328.


ensembl_gene_id: c1829
symbol: ynbE
gene_biotype: protein_coding
description:
  Hypothetical protein ynbE; Escherichia coli K-12 ortholog: b1382; Escherichia coli O157:H7 ortholog: z2327.


ensembl_gene_id: c1830
symbol: ydbL
gene_biotype: protein_coding
description:
  Hypothetical protein ydbL precursor; Escherichia coli K-12 ortholog: b1383; Escherichia coli O157:H7 ortholog: z2326.


ensembl_gene_id: c1832
symbol: ydbC
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ydbC; Escherichia coli K-12 ortholog: b1406; Escherichia coli O157:H7 ortholog: z2321.


ensembl_gene_id: c1834
symbol: ynbA
gene_biotype: protein_coding
description:
  Hypothetical protein ynbA; Escherichia coli K-12 ortholog: b1408; Escherichia coli O157:H7 ortholog: z2319.


ensembl_gene_id: c1835
symbol: ynbB
gene_biotype: protein_coding
description:
  Hypothetical protein ynbB; Escherichia coli K-12 ortholog: b1409; Escherichia coli O157:H7 ortholog: z2318.


ensembl_gene_id: c1836
symbol: ynbC
gene_biotype: protein_coding
description:
  Hypothetical protein ynbC; Escherichia coli K-12 ortholog: b1410; Escherichia coli O157:H7 ortholog: z2317.


ensembl_gene_id: c1837
symbol: ynbD
gene_biotype: protein_coding
description:
  Hypothetical protein ynbD; Escherichia coli K-12 ortholog: b1411; Escherichia coli O157:H7 ortholog: z2316.


ensembl_gene_id: c1839
symbol: acpD
gene_biotype: protein_coding
description:
  Acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: c1840
symbol: hrpA
gene_biotype: protein_coding
description:
  ATP-dependent helicase hrpA; Escherichia coli K-12 ortholog: b1413; Escherichia coli O157:H7 ortholog: z2313.


ensembl_gene_id: c1842
symbol: aldA
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase A; Escherichia coli K-12 ortholog: b1415; Escherichia coli O157:H7 ortholog: z2306; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: c1843
symbol: c1843
gene_biotype: protein_coding
description:
  Glyceraldehyde 3-phosphate dehydrogenase A; Escherichia coli K-12 ortholog: b1779; Escherichia coli O157:H7 ortholog: z2304; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: c1845
symbol: ydcA
gene_biotype: protein_coding
description:
  Hypothetical protein ydcA precursor; Escherichia coli K-12 ortholog: b1419; Escherichia coli O157:H7 ortholog: z2302.


ensembl_gene_id: c1846
symbol: c1846
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 10 to 156 of 156 are 95.91 pct identical to residues 400 to 546 of 546 from MG1655 : b1421.


ensembl_gene_id: c1847
symbol: ycdI
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ydcI; Escherichia coli K-12 ortholog: b1422; Escherichia coli O157:H7 ortholog: z2299; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c1849
symbol: ydcG
gene_biotype: protein_coding
description:
  Protein ydcG precursor; Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs); Belongs to the OpgD/OpgG family.


ensembl_gene_id: c1850
symbol: ydcH
gene_biotype: protein_coding
description:
  Hypothetical protein ydcH; Escherichia coli K-12 ortholog: b1426; Escherichia coli O157:H7 ortholog: z2292.


ensembl_gene_id: c1852
symbol: ydcK
gene_biotype: protein_coding
description:
  Hypothetical protein ydcK; Escherichia coli K-12 ortholog: b1428; Escherichia coli O157:H7 ortholog: z2290.


ensembl_gene_id: c1853
symbol: tehA
gene_biotype: protein_coding
description:
  Tellurite resistance protein tehA; Escherichia coli K-12 ortholog: b1429; Escherichia coli O157:H7 ortholog: z2289.


ensembl_gene_id: c1854
symbol: tehB
gene_biotype: protein_coding
description:
  Tellurite resistance protein tehB; Escherichia coli K-12 ortholog: b1430; Escherichia coli O157:H7 ortholog: z2288.


ensembl_gene_id: c1856
symbol: ydcL
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein ydcL precursor; Escherichia coli K-12 ortholog: b1431; Escherichia coli O157:H7 ortholog: z2287.


ensembl_gene_id: c1857
symbol: ydcO
gene_biotype: protein_coding
description:
  Hypothetical protein ydcO; Escherichia coli K-12 ortholog: b1433; Escherichia coli O157:H7 ortholog: z2286.


ensembl_gene_id: c1858
symbol: ydcN
gene_biotype: protein_coding
description:
  Hypothetical protein ydcN; Escherichia coli K-12 ortholog: b1434; Escherichia coli O157:H7 ortholog: z2285.


ensembl_gene_id: c1859
symbol: ydcP
gene_biotype: protein_coding
description:
  Putative protease ydcP precursor; Escherichia coli K-12 ortholog: b1435; Escherichia coli O157:H7 ortholog: z2284.


ensembl_gene_id: c1860
symbol: yncJ
gene_biotype: protein_coding
description:
  Hypothetical protein yncJ precursor; Escherichia coli K-12 ortholog: b1436; Escherichia coli O157:H7 ortholog: z2283.


ensembl_gene_id: c1862
symbol: c1862
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 67 of 67 are 95.52 pct identical to residues 79 to 145 of 145 from GenPept.129 : >gb|AAC74520.1| (AE000241) orf, hypothetical protein [Escherichia coli K12].


ensembl_gene_id: c1863
symbol: ydcR
gene_biotype: protein_coding
description:
  Hypothetical protein ydcR; Escherichia coli K-12 ortholog: b1439; Escherichia coli O157:H7 ortholog: z2280.


ensembl_gene_id: c1864
symbol: ydcS
gene_biotype: protein_coding
description:
  Putative ABC transporter Periplasmic binding protein ydcS precursor; Escherichia coli K-12 ortholog: b1440; Escherichia coli O157:H7 ortholog: z2279.


ensembl_gene_id: c1865
symbol: ydcT
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein ydcT; Escherichia coli K-12 ortholog: b1441; Escherichia coli O157:H7 ortholog: z2278; Belongs to the ABC transporter superfamily.


ensembl_gene_id: c1866
symbol: ydcU
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein ydcU; Escherichia coli K-12 ortholog: b1442; Escherichia coli O157:H7 ortholog: z2277.


ensembl_gene_id: c1867
symbol: ydcV
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter permease protein ydcV; Escherichia coli K-12 ortholog: b1443; Escherichia coli O157:H7 ortholog: z2276.


ensembl_gene_id: c1869
symbol: ydcW
gene_biotype: protein_coding
description:
  Putative betaine aldehyde dehydrogenase; Catalyzes the oxidation 4-aminobutanal (gamma- aminobutyraldehyde) to 4-aminobutanoate (gamma-aminobutyrate or GABA). This is the second step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate via 4- aminobutanal. Also functions as a 5-aminopentanal dehydrogenase in a a L-lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate.


ensembl_gene_id: c1870
symbol: ortT
gene_biotype: protein_coding
description:
  Hypothetical protein ydcX; Acts as an orphan toxin which is important for maintaining cell fitness during stress related to the stringent response. Increases the formation of persister cells. Has no known antitoxin.


ensembl_gene_id: c1871
symbol: ydc
gene_biotype: protein_coding
description:
  Hypothetical protein ydcY; Escherichia coli K-12 ortholog: b1446; Escherichia coli O157:H7 ortholog: z2273.


ensembl_gene_id: c1872
symbol: ydcZ
gene_biotype: protein_coding
description:
  Hypothetical protein ydcZ; Escherichia coli K-12 ortholog: b1447; Escherichia coli O157:H7 ortholog: z2272.


ensembl_gene_id: c1873
symbol: yncA
gene_biotype: protein_coding
description:
  Hypothetical acetyltransferase yncA; Escherichia coli K-12 ortholog: b1448; Escherichia coli O157:H7 ortholog: z2271.


ensembl_gene_id: c1874
symbol: c1874
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 11 to 66 of 78 are 89.28 pct identical to residues 71 to 126 of 240 from MG1655 : b1450.


ensembl_gene_id: c1877
symbol: yncE
gene_biotype: protein_coding
description:
  Hypothetical protein yncE precursor; Escherichia coli K-12 ortholog: b1452; Escherichia coli O157:H7 ortholog: z2267.


ensembl_gene_id: c1878
symbol: ansP
gene_biotype: protein_coding
description:
  L-asparagine transport protein; Escherichia coli K-12 ortholog: b1453; Escherichia coli O157:H7 ortholog: z2266.


ensembl_gene_id: c1879
symbol: c1879
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 58 of 58 are 96.55 pct identical to residues 1 to 58 of 205 from GenPept.129 : >gb|AAG56321.1|AE005361_2 (AE005361) putative transferase [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1880
symbol: c1880
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 109 of 109 are 90.82 pct identical to residues 97 to 205 of 205 from MG1655 : b1454.


ensembl_gene_id: c1882
symbol: c1882
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 94 of 94 are 67.85 pct identical to residues 11 to 94 of 94 from GenPept.129 : >gb|AAF96019.1| (AE004353) conserved hypothetical protein [Vibrio cholerae].


ensembl_gene_id: c1887
symbol: c1887
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 11 to 94 of 94 are 66.66 pct identical to residues 11 to 94 of 94 from GenPept.129 : >gb|AAF96019.1| (AE004353) conserved hypothetical protein [Vibrio cholerae].


ensembl_gene_id: c1893
symbol: c1893
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 47 of 47 are 87.23 pct identical to residues 68 to 114 of 203 from GenPept.129 : >gb|AAG56311.1|AE005360_3 (AE005360) H repeat-associated protein of Rhs element [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c1894
symbol: yddH
gene_biotype: protein_coding
description:
  Hypothetical protein yddH; Escherichia coli K-12 ortholog: b1462; Escherichia coli O157:H7 ortholog: z2251.


ensembl_gene_id: c1895
symbol: nhoA
gene_biotype: protein_coding
description:
  N-hydroxyarylamine O-acetyltransferase; Escherichia coli K-12 ortholog: b1463; Escherichia coli O157:H7 ortholog: z2250; Belongs to the arylamine N-acetyltransferase family.


ensembl_gene_id: c1896
symbol: yddE
gene_biotype: protein_coding
description:
  Hypothetical protein yddE; ORFB; Escherichia coli K-12 ortholog: b1464; Escherichia coli O157:H7 ortholog: z2248.


ensembl_gene_id: c1897
symbol: narV
gene_biotype: protein_coding
description:
  Respiratory nitrate reductase 2 gamma chain; Escherichia coli K-12 ortholog: b1465; Escherichia coli O157:H7 ortholog: z2247.


ensembl_gene_id: c1898
symbol: narW
gene_biotype: protein_coding
description:
  Respiratory nitrate reductase 2 delta chain; Escherichia coli K-12 ortholog: b1466; Escherichia coli O157:H7 ortholog: z2246.


ensembl_gene_id: c1899
symbol: narY
gene_biotype: protein_coding
description:
  Respiratory nitrate reductase 2 beta chain; Escherichia coli K-12 ortholog: b1467; Escherichia coli O157:H7 ortholog: z2245.


ensembl_gene_id: c1900
symbol: narZ
gene_biotype: protein_coding
description:
  Respiratory nitrate reductase 2 alpha chain; Escherichia coli K-12 ortholog: b1468; Escherichia coli O157:H7 ortholog: z2244; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: c1901
symbol: narU
gene_biotype: protein_coding
description:
  Nitrite facilitator 2; Escherichia coli K-12 ortholog: b1469; Escherichia coli O157:H7 ortholog: z2243.


ensembl_gene_id: c1902
symbol: yddG
gene_biotype: protein_coding
description:
  Hypothetical protein yddG; Escherichia coli K-12 ortholog: b1473; Escherichia coli O157:H7 ortholog: z2238.


ensembl_gene_id: c1906
symbol: fdnH
gene_biotype: protein_coding
description:
  Formate dehydrogenase-N beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.


ensembl_gene_id: c1907
symbol: fdnI
gene_biotype: protein_coding
description:
  Formate dehydrogenase-N gamma subunit; Nitrate-inducible; Cytochrome b556 (FDN) subunit; Escherichia coli K-12 ortholog: b1476; Escherichia coli O157:H7 ortholog: z2234.


ensembl_gene_id: c1909
symbol: yddM
gene_biotype: protein_coding
description:
  Hypothetical protein yddM; Escherichia coli K-12 ortholog: b1477; Escherichia coli O157:H7 ortholog: z2233; Belongs to the VapA/VapI family.


ensembl_gene_id: c1910
symbol: c1910
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 2 to 90 of 90 are 56.17 pct identical to residues 4 to 92 of 92 from GenPept.129 : >gb|AAC43982.1| (U43847) killer protein [Plasmid Rts1].


ensembl_gene_id: c1911
symbol: adhP
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase, propanol-preferring; Escherichia coli K-12 ortholog: b1478; Escherichia coli O157:H7 ortholog: z2232.


ensembl_gene_id: c1912
symbol: sfcA
gene_biotype: protein_coding
description:
  NAD-dependent malic enzyme; Escherichia coli K-12 ortholog: b1479; Escherichia coli O157:H7 ortholog: z2231; Belongs to the malic enzymes family.


ensembl_gene_id: c1913
symbol: rpsV
gene_biotype: protein_coding
description:
  30S ribosomal protein S22; Although this protein associates with the 30S subunit of the ribosome it is not considered to be a bona fide ribosomal protein. Belongs to the SRA family.


ensembl_gene_id: c1914
symbol: bdm
gene_biotype: protein_coding
description:
  Bdm protein; Biofilm-dependent modulation protein; Escherichia coli K-12 ortholog: b1481; Escherichia coli O157:H7 ortholog: z2229.


ensembl_gene_id: c1916
symbol: osmC
gene_biotype: protein_coding
description:
  Osmotically inducible protein C; Escherichia coli K-12 ortholog: b1482; Escherichia coli O157:H7 ortholog: z2228.


ensembl_gene_id: c1919
symbol: c1919
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 19 to 72 of 72 are 98.14 pct identical to residues 407 to 460 of 460 from MG1655 : b1490.


ensembl_gene_id: c1920
symbol: yddW
gene_biotype: protein_coding
description:
  Hypothetical lipoprotein yddW precursor; Escherichia coli K-12 ortholog: b1491; Escherichia coli O157:H7 ortholog: z2217.


ensembl_gene_id: c1921
symbol: xasA
gene_biotype: protein_coding
description:
  Amino acid antiporter; Involved in glutamate-dependent acid resistance. Imports glutamate inside the cell while simultaneously exporting to the periplasm the GABA produced by GadA and GadB. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria (By similarity).


ensembl_gene_id: c1922
symbol: gadB
gene_biotype: protein_coding
description:
  Glutamate decarboxylase beta; Converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria (By similarity).


ensembl_gene_id: c1923
symbol: pqqL
gene_biotype: protein_coding
description:
  Probable zinc protease pqqL; Escherichia coli K-12 ortholog: b1494; Escherichia coli O157:H7 ortholog: z2214; Belongs to the peptidase M16 family.


ensembl_gene_id: c1924
symbol: yddB
gene_biotype: protein_coding
description:
  Hypothetical protein yddB; CDS103; Escherichia coli K-12 ortholog: b1495; Escherichia coli O157:H7 ortholog: z2213.


ensembl_gene_id: c1925
symbol: yddA
gene_biotype: protein_coding
description:
  Hypothetical ABC transporter ATP-binding protein yddA; CDS102; Escherichia coli K-12 ortholog: b1496; Escherichia coli O157:H7 ortholog: z2212.


ensembl_gene_id: c1926
symbol: ydeM
gene_biotype: protein_coding
description:
  Hypothetical protein ydeM; Escherichia coli K-12 ortholog: b1497; Escherichia coli O157:H7 ortholog: z2211.


ensembl_gene_id: c1927
symbol: ydeN
gene_biotype: protein_coding
description:
  Putative sulfatase ydeN precursor; Escherichia coli K-12 ortholog: b1498; Escherichia coli O157:H7 ortholog: z2210.


ensembl_gene_id: c1928
symbol: ydeO
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ydeO; Induces the expression of gadE and mdtEF. Could also regulate the expression of other genes involved in acid resistance (By similarity).


ensembl_gene_id: c1929
symbol: safA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Connects the signal transduction between the two-component systems EvgS/EvgA and PhoQ/PhoP, by directly interacting with PhoQ and thus activating the PhoQ/PhoP system, in response to acid stress conditions; Belongs to the SafA family.


ensembl_gene_id: c1930
symbol: ydeP
gene_biotype: protein_coding
description:
  Hypothetical protein ydeP; Probably involved in acid resistance; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: c1931
symbol: ydeQ
gene_biotype: protein_coding
description:
  Hypothetical fimbrial-like protein ydeQ precursor; Escherichia coli K-12 ortholog: b1502; Escherichia coli O157:H7 ortholog: z2206.


ensembl_gene_id: c1932
symbol: ydeR
gene_biotype: protein_coding
description:
  Hypothetical fimbrial-like protein ydeR precursor; Escherichia coli K-12 ortholog: b1503; Escherichia coli O157:H7 ortholog: z2205.


ensembl_gene_id: c1933
symbol: ydeS
gene_biotype: protein_coding
description:
  Hypothetical fimbrial-like protein ydeS precursor; Escherichia coli K-12 ortholog: b1504; Escherichia coli O157:H7 ortholog: z2204.


ensembl_gene_id: c1934
symbol: c1934
gene_biotype: protein_coding
description:
  Outer membrane usher protein fimD precursor; Escherichia coli K-12 ortholog: b4317; Escherichia coli O157:H7 ortholog: z2203.


ensembl_gene_id: c1935
symbol: c1935
gene_biotype: protein_coding
description:
  Chaperone protein fimC precursor; Escherichia coli K-12 ortholog: b4316; Escherichia coli O157:H7 ortholog: z2201.


ensembl_gene_id: c1936
symbol: c1936
gene_biotype: protein_coding
description:
  Type-1 fimbrial protein, A chain precursor; Type-1A pilin; Escherichia coli K-12 ortholog: b4314; Escherichia coli O157:H7 ortholog: z2200.


ensembl_gene_id: c1937
symbol: c1937
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 222 of 260 are 34.22 pct identical to residues 1 to 219 of 219 from GenPept.129 : >dbj|BAA18102.1| (D90911) ORF_ID:sll1218; hypothetical protein [Synechocystis sp. PCC 6803].


ensembl_gene_id: c1939
symbol: c1939
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 134 of 150 are 81.34 pct identical to residues 139 to 272 of 363 from GenPept.129 : >emb|CAC90815.1| (AJ414151) conserved hypothetical protein [Yersinia pestis].


ensembl_gene_id: c1940
symbol: hipA
gene_biotype: protein_coding
description:
  Protein hipA; Toxic component of a type II toxin-antitoxin (TA) system. Phosphorylates Glu-tRNA-ligase (GltX, on 'Ser-239') in vivo. Phosphorylation of GltX prevents it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to multidrug resistance and persistence. Low level expression of HipA induces dormancy and depending on the protein level, can be toxic enough t [...]


ensembl_gene_id: c1941
symbol: hipB
gene_biotype: protein_coding
description:
  Protein hipB; Antitoxin component of a type II type II toxin-antitoxin (TA) system. Neutralizes the toxic effect of cognate toxin HipA. Represses the hipBA operon promoter (By similarity).


ensembl_gene_id: c1942
symbol: tam
gene_biotype: protein_coding
description:
  Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.


ensembl_gene_id: c1943
symbol: yneE
gene_biotype: protein_coding
description:
  Hypothetical protein yneE; Escherichia coli K-12 ortholog: b1520; Escherichia coli O157:H7 ortholog: z2185.


ensembl_gene_id: c1945
symbol: yneF
gene_biotype: protein_coding
description:
  Hypothetical protein yneF; Escherichia coli K-12 ortholog: b1522; Escherichia coli O157:H7 ortholog: z2182.


ensembl_gene_id: c1946
symbol: yneG
gene_biotype: protein_coding
description:
  Hypothetical protein yneG; Escherichia coli K-12 ortholog: b1523; Escherichia coli O157:H7 ortholog: z2180.


ensembl_gene_id: c1947
symbol: yneH
gene_biotype: protein_coding
description:
  Probable glutaminase yneH; Escherichia coli K-12 ortholog: b1524; Escherichia coli O157:H7 ortholog: z2179; Belongs to the glutaminase family.


ensembl_gene_id: c1948
symbol: yneI
gene_biotype: protein_coding
description:
  Aldehyde-dehydrogenase like protein yneI; Escherichia coli K-12 ortholog: b1525; Escherichia coli O157:H7 ortholog: z2178.


ensembl_gene_id: c1949
symbol: yneJ
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator yneJ; Escherichia coli K-12 ortholog: b1526; Escherichia coli O157:H7 ortholog: z2177; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c1950
symbol: sotB
gene_biotype: protein_coding
description:
  Sugar efflux transporter; Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites; Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family.


ensembl_gene_id: c1951
symbol: marC
gene_biotype: protein_coding
description:
  Multiple antibiotic resistance protein marC; Escherichia coli K-12 ortholog: b1529; Escherichia coli O157:H7 ortholog: z2172.


ensembl_gene_id: c1952
symbol: marR
gene_biotype: protein_coding
description:
  Multiple antibiotic resistance protein marR; Escherichia coli K-12 ortholog: b1530; Escherichia coli O157:H7 ortholog: z2171.


ensembl_gene_id: c1953
symbol: marA
gene_biotype: protein_coding
description:
  Multiple antibiotic resistance protein marA; Escherichia coli K-12 ortholog: b1531; Escherichia coli O157:H7 ortholog: z2170.


ensembl_gene_id: c1954
symbol: marB
gene_biotype: protein_coding
description:
  Multiple antibiotic resistance protein marB; Escherichia coli K-12 ortholog: b1532; Escherichia coli O157:H7 ortholog: z2169.


ensembl_gene_id: c1955
symbol: c1955
gene_biotype: protein_coding
description:
  6-phospho-beta-glucosidase bglA; Escherichia coli K-12 ortholog: b2901; Escherichia coli O157:H7 ortholog: z4239; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: c1957
symbol: c1957
gene_biotype: protein_coding
description:
  PTS system, cellobiose-specific IIA component; EIIA-Cel; Escherichia coli K-12 ortholog: b1736; Escherichia coli O157:H7 ortholog: z2766.


ensembl_gene_id: c1958
symbol: c1958
gene_biotype: protein_coding
description:
  Putative conserved protein; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.


ensembl_gene_id: c1959
symbol: c1959
gene_biotype: protein_coding
description:
  PTS system, cellobiose-specific IIB component; EIIB-Cel; Escherichia coli K-12 ortholog: b1738; Escherichia coli O157:H7 ortholog: z2768.


ensembl_gene_id: c1960
symbol: c1960
gene_biotype: protein_coding
description:
  Putative conserved protein; Residues 1 to 232 of 232 are 35.77 pct identical to residues 1 to 232 of 238 from MG1655 : b3684.


ensembl_gene_id: c1961
symbol: ydeD
gene_biotype: protein_coding
description:
  Probable amino acid metabolite efflux pump; Escherichia coli K-12 ortholog: b1533; Escherichia coli O157:H7 ortholog: z2168.


ensembl_gene_id: c1962
symbol: ydeF
gene_biotype: protein_coding
description:
  Hypothetical protein ydeE; Escherichia coli K-12 ortholog: b1534; Escherichia coli O157:H7 ortholog: z2166.


ensembl_gene_id: c1963
symbol: ydeH
gene_biotype: protein_coding
description:
  Hypothetical protein ydeH; Escherichia coli K-12 ortholog: b1535; Escherichia coli O157:H7 ortholog: z2163.


ensembl_gene_id: c1964
symbol: dcp
gene_biotype: protein_coding
description:
  Peptidyl-dipeptidase dcp; Escherichia coli K-12 ortholog: b1538; Escherichia coli O157:H7 ortholog: z2160.


ensembl_gene_id: c1965
symbol: ydfG
gene_biotype: protein_coding
description:
  Probable oxidoreductase ydfG; NADP-dependent dehydrogenase with broad substrate specificity acting on 3-hydroxy acids. Catalyzes the NADP-dependent oxidation of L- allo-threonine to L-2-amino-3-keto-butyrate, which is spontaneously decarboxylated into aminoacetone. Also acts on D-threonine, L-serine, D-serine, D-3-hydroxyisobutyrate, L-3-hydroxyisobutyrate, D-glycerate and L-glycerate. Able to catalyze the reduction of the malonic semialdehyde to 3-hydroxypropionic acid. YdfG is apparently supplementing RutE, the presumed malonic semialdehyde reductase involved in pyrimidine degradatio [...]


ensembl_gene_id: c1966
symbol: ydfH
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ydfH; Escherichia coli K-12 ortholog: b1540; Escherichia coli O157:H7 ortholog: z2157.


ensembl_gene_id: c1967
symbol: ydfZ
gene_biotype: protein_coding
description:
  Hypothetical protein ydfZ; Escherichia coli K-12 ortholog: b1541; Escherichia coli O157:H7 ortholog: z2156.


ensembl_gene_id: c1968
symbol: c1968
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ydfI; Escherichia coli K-12 ortholog: b1542; Escherichia coli O157:H7 ortholog: z2155; Belongs to the mannitol dehydrogenase family.


ensembl_gene_id: c1969
symbol: ydfJ
gene_biotype: protein_coding
description:
  Hypothetical metabolite transport protein ydfJ; Escherichia coli K-12 ortholog: b1543; Escherichia coli O157:H7 ortholog: z2153.


ensembl_gene_id: c1971
symbol: rspA
gene_biotype: protein_coding
description:
  Starvation sensing protein rspA; Has low D-mannonate dehydratase activity (in vitro), suggesting that this is not a physiological substrate and that it has no significant role in D-mannonate degradation in vivo. Has no detectable activity with a panel of 70 other acid sugars (in vitro). Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily.


ensembl_gene_id: c1972
symbol: ynfA
gene_biotype: protein_coding
description:
  Hypothetical protein ynfA; Escherichia coli K-12 ortholog: b1582; Escherichia coli O157:H7 ortholog: z2569.


ensembl_gene_id: c1973
symbol: ynfB
gene_biotype: protein_coding
description:
  Hypothetical protein ynfB precursor; Escherichia coli K-12 ortholog: b1583; Escherichia coli O157:H7 ortholog: z2570; Belongs to the UPF0482 family.


ensembl_gene_id: c1974
symbol: speG
gene_biotype: protein_coding
description:
  Spermidine N(1)-acetyltransferase; Escherichia coli K-12 ortholog: b1584; Escherichia coli O157:H7 ortholog: z2571.


ensembl_gene_id: c1975
symbol: ynfC
gene_biotype: protein_coding
description:
  Hypothetical protein ynfC; Escherichia coli K-12 ortholog: b1585; Escherichia coli O157:H7 ortholog: z2572.


ensembl_gene_id: c1976
symbol: ynfD
gene_biotype: protein_coding
description:
  Hypothetical protein ynfD precursor; Escherichia coli K-12 ortholog: b1586; Escherichia coli O157:H7 ortholog: z2573.


ensembl_gene_id: c1977
symbol: ynfE
gene_biotype: protein_coding
description:
  Putative dimethyl sulfoxide reductase chain ynfE precursor; Escherichia coli K-12 ortholog: b1587; Escherichia coli O157:H7 ortholog: z2575; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: c1978
symbol: ynfF
gene_biotype: protein_coding
description:
  Probable dimethyl sulfoxide reductase chain ynfF precursor; Escherichia coli K-12 ortholog: b1588; Escherichia coli O157:H7 ortholog: z2576; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: c1979
symbol: ynfG
gene_biotype: protein_coding
description:
  Probable anaerobic dimethyl sulfoxide reductase chain ynfG; Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds.


ensembl_gene_id: c1981
symbol: ynfH
gene_biotype: protein_coding
description:
  Anaerobic dimethyl sulfoxide reductase chain ynfH; DMSO reductase anchor subunit ynfH; Escherichia coli K-12 ortholog: b1590; Escherichia coli O157:H7 ortholog: z2579.


ensembl_gene_id: c1982
symbol: ynfI
gene_biotype: protein_coding
description:
  Hypothetical protein ynfI precursor; Required for biogenesis/assembly of DMSO reductase, but not for the interaction of the DmsA signal peptide with the Tat system. May be part of a chaperone cascade complex that facilitates a folding- maturation pathway for the substrate protein.


ensembl_gene_id: c1983
symbol: ynfJ
gene_biotype: protein_coding
description:
  Putative chloride channel protein eriC-like; Probably acts as an electrical shunt for an outwardly- directed proton pump that is linked to amino acid decarboxylation, as part of the extreme acid resistance (XAR) response; Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily.


ensembl_gene_id: c1984
symbol: ynfK
gene_biotype: protein_coding
description:
  Putative dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. Belongs to the dethiobiotin synthetase family.


ensembl_gene_id: c1985
symbol: mlc
gene_biotype: protein_coding
description:
  Mlc protein; Making large colonies protein; Escherichia coli K-12 ortholog: b1594; Escherichia coli O157:H7 ortholog: z2587.


ensembl_gene_id: c1986
symbol: ynfL
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ynfL; Escherichia coli K-12 ortholog: b1595; Escherichia coli O157:H7 ortholog: z2589; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c1987
symbol: ynfM
gene_biotype: protein_coding
description:
  Hypothetical transport protein ynfM; Escherichia coli K-12 ortholog: b1596; Escherichia coli O157:H7 ortholog: z2590.


ensembl_gene_id: c1989
symbol: c1989
gene_biotype: protein_coding
description:
  Putative acid shock protein; Residues 1 to 125 of 125 are 94.40 pct identical to residues 3 to 127 of 127 from GenPept.129 : >dbj|BAA15332.1| (D90802) Acid shock protein. [Escherichia coli].


ensembl_gene_id: c1990
symbol: c1990
gene_biotype: protein_coding
description:
  Putative protease ydgD precursor; Escherichia coli K-12 ortholog: b1598; Escherichia coli O157:H7 ortholog: z2592; Belongs to the peptidase S1B family.


ensembl_gene_id: c1993
symbol: c1993
gene_biotype: protein_coding
description:
  Hypothetical protein ydgG; Escherichia coli K-12 ortholog: b1601; Escherichia coli O157:H7 ortholog: z2595.


ensembl_gene_id: c1994
symbol: pntB
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: c1995
symbol: pntA
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit alpha; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane.


ensembl_gene_id: c1996
symbol: ydgH
gene_biotype: protein_coding
description:
  Protein ydgH precursor; Escherichia coli K-12 ortholog: b1604; Escherichia coli O157:H7 ortholog: z2603.


ensembl_gene_id: c1997
symbol: ydgI
gene_biotype: protein_coding
description:
  Putative arginine/ornithine antiporter; Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway; Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family.


ensembl_gene_id: c1998
symbol: ydgB
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ydgB; Catalyzes the reduction of dihydromonapterin to tetrahydromonapterin. Also has lower activity with dihydrofolate.


ensembl_gene_id: c1999
symbol: ydgC
gene_biotype: protein_coding
description:
  Hypothetical protein ydgC; Escherichia coli K-12 ortholog: b1607; Escherichia coli O157:H7 ortholog: z2608.


ensembl_gene_id: c2000
symbol: rstA
gene_biotype: protein_coding
description:
  Transcriptional Regulatory protein rstA; Escherichia coli K-12 ortholog: b1608; Escherichia coli O157:H7 ortholog: z2609.


ensembl_gene_id: c2001
symbol: rstB
gene_biotype: protein_coding
description:
  Sensor protein rstB; Escherichia coli K-12 ortholog: b1609; Escherichia coli O157:H7 ortholog: z2610.


ensembl_gene_id: c2002
symbol: tus
gene_biotype: protein_coding
description:
  DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.


ensembl_gene_id: c2003
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: c2004
symbol: fumA
gene_biotype: protein_coding
description:
  Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Functions as an aerobic enzyme in the direction of malate formation as part of the citric acid cycle. Accounts for about 80% of the fumarase activity when the bacteria grow aerobically. To a lesser extent, also displays D-tartrate dehydratase activity in vitro, but is not able to convert (R)-malate, L-tartrate or meso-tartrate. Can also catalyze the isomerization of enol- to keto-oxaloacetate.


ensembl_gene_id: c2005
symbol: manA
gene_biotype: protein_coding
description:
  Mannose-6-phosphate isomerase; Escherichia coli K-12 ortholog: b1613; Escherichia coli O157:H7 ortholog: z2616; Belongs to the mannose-6-phosphate isomerase type 1 family.


ensembl_gene_id: c2006
symbol: ydgA
gene_biotype: protein_coding
description:
  Hypothetical protein ydgA; Escherichia coli K-12 ortholog: b1614; Escherichia coli O157:H7 ortholog: z2617.


ensembl_gene_id: c2007
symbol: uidC
gene_biotype: protein_coding
description:
  Membrane-associated protein uidC precursor; Escherichia coli K-12 ortholog: b1615; Escherichia coli O157:H7 ortholog: z2619.


ensembl_gene_id: c2008
symbol: uidB
gene_biotype: protein_coding
description:
  Glucuronide carrier protein; Glucuronide permease; Escherichia coli K-12 ortholog: b1616; Escherichia coli O157:H7 ortholog: z2620.


ensembl_gene_id: c2009
symbol: uidA
gene_biotype: protein_coding
description:
  Beta-glucuronidase; Escherichia coli K-12 ortholog: b1617; Escherichia coli O157:H7 ortholog: z2621; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: c2011
symbol: hdhA
gene_biotype: protein_coding
description:
  7-alpha-hydroxysteroid dehydrogenase; Escherichia coli K-12 ortholog: b1619; Escherichia coli O157:H7 ortholog: z2624.


ensembl_gene_id: c2012
symbol: malI
gene_biotype: protein_coding
description:
  Maltose regulon Regulatory protein malI; Escherichia coli K-12 ortholog: b1620; Escherichia coli O157:H7 ortholog: z2625.


ensembl_gene_id: c2013
symbol: malX
gene_biotype: protein_coding
description:
  Maltose and glucose-permease IIABC component; Escherichia coli K-12 ortholog: b1621; Escherichia coli O157:H7 ortholog: z2626.


ensembl_gene_id: c2014
symbol: malY
gene_biotype: protein_coding
description:
  MalY protein; Escherichia coli K-12 ortholog: b1622; Escherichia coli O157:H7 ortholog: z2627; bifunctional; Cystathionine beta-lyase; Maltose regulon modulator.


ensembl_gene_id: c2015
symbol: add
gene_biotype: protein_coding
description:
  Adenosine deaminase; Escherichia coli K-12 ortholog: b1623; Escherichia coli O157:H7 ortholog: z2628; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.


ensembl_gene_id: c2016
symbol: ydgJ
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ydgJ; Escherichia coli K-12 ortholog: b1624; Escherichia coli O157:H7 ortholog: z2629.


ensembl_gene_id: c2017
symbol: ydgT
gene_biotype: protein_coding
description:
  Hypothetical protein ydgT; Modifies the set of genes regulated by H-NS; Hha and cnu (YdgT) increase the number of genes bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex on DNA. The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC; Belongs to the Hha/YmoA/Cnu family.


ensembl_gene_id: c2018
symbol: ydgK
gene_biotype: protein_coding
description:
  Hypothetical protein ydgK; Escherichia coli K-12 ortholog: b1626; Escherichia coli O157:H7 ortholog: z2632.


ensembl_gene_id: c2019
symbol: rsxA
gene_biotype: protein_coding
description:
  Electron transport complex protein rnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR.


ensembl_gene_id: c2020
symbol: rsxB
gene_biotype: protein_coding
description:
  Electron transport complex protein rnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: c2021
symbol: rsxC
gene_biotype: protein_coding
description:
  Electron transport complex protein rnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.


ensembl_gene_id: c2022
symbol: ydgO
gene_biotype: protein_coding
description:
  Electron transport complex protein rnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the NqrB/RnfD family.


ensembl_gene_id: c2023
symbol: rsxG
gene_biotype: protein_coding
description:
  Electron transport complex protein rnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the RnfG family.


ensembl_gene_id: c2024
symbol: ydgQ
gene_biotype: protein_coding
description:
  Electron transport complex protein rnfE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR.


ensembl_gene_id: c2025
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: c2026
symbol: ydgR
gene_biotype: protein_coding
description:
  Hypothetical transporter ydgR; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily.


ensembl_gene_id: c2027
symbol: gst
gene_biotype: protein_coding
description:
  Glutathione S-transferase; Escherichia coli K-12 ortholog: b1635; Escherichia coli O157:H7 ortholog: z2647.


ensembl_gene_id: c2028
symbol: pdxY
gene_biotype: protein_coding
description:
  Pyridoxamine kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.


ensembl_gene_id: c2029
symbol: tyrS
gene_biotype: protein_coding
description:
  Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: c2030
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: c2031
symbol: ydhA
gene_biotype: protein_coding
description:
  Hypothetical protein ydhA; Escherichia coli K-12 ortholog: b1639; Escherichia coli O157:H7 ortholog: z2653.


ensembl_gene_id: c2032
symbol: ydhH
gene_biotype: protein_coding
description:
  Hypothetical protein ydhH; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: c2033
symbol: slyB
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein slyB precursor; Escherichia coli K-12 ortholog: b1641; Escherichia coli O157:H7 ortholog: z2655.


ensembl_gene_id: c2034
symbol: slyA
gene_biotype: protein_coding
description:
  Transcriptional regulator slyA; Transcription regulator that can specifically activate or repress expression of target genes; Belongs to the SlyA family.


ensembl_gene_id: c2035
symbol: ydhI
gene_biotype: protein_coding
description:
  Hypothetical protein ydhI; Escherichia coli K-12 ortholog: b1643; Escherichia coli O157:H7 ortholog: z2658.


ensembl_gene_id: c2036
symbol: ydhJ
gene_biotype: protein_coding
description:
  Hypothetical protein ydhJ; Escherichia coli K-12 ortholog: b1644; Escherichia coli O157:H7 ortholog: z2659; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: c2037
symbol: ydhK
gene_biotype: protein_coding
description:
  Hypothetical protein ydhK; Escherichia coli K-12 ortholog: b1645; Escherichia coli O157:H7 ortholog: z2660.


ensembl_gene_id: c2038
symbol: sodC
gene_biotype: protein_coding
description:
  Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.


ensembl_gene_id: c2039
symbol: ydhF
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase ydhF; Escherichia coli K-12 ortholog: b1647; Escherichia coli O157:H7 ortholog: z2664.


ensembl_gene_id: c2040
symbol: ydhL
gene_biotype: protein_coding
description:
  Hypothetical protein ydhL precursor; Escherichia coli K-12 ortholog: b1648; Escherichia coli O157:H7 ortholog: z2665.


ensembl_gene_id: c2042
symbol: ydhM
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ydhM; Involved in response to both electrophiles and reactive chlorine species (RCS). Represses the transcription of the nemRA-gloA operon by binding to the NemR box.


ensembl_gene_id: c2043
symbol: nemA
gene_biotype: protein_coding
description:
  N-ethylmaleimide reductase; Escherichia coli K-12 ortholog: b1650; Escherichia coli O157:H7 ortholog: z2668.


ensembl_gene_id: c2044
symbol: gloA
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.


ensembl_gene_id: c2045
symbol: rnt
gene_biotype: protein_coding
description:
  Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.


ensembl_gene_id: c2047
symbol: c2047
gene_biotype: protein_coding
description:
  Hypothetical protein; Residues 1 to 37 of 47 are 94.59 pct identical to residues 1 to 37 of 1538 from GenPept.129 : >gb|AAG56642.1|AE005388_7 (AE005388) member of ATP-dependent helicase superfamily II [Escherichia coli O157:H7 EDL933].


ensembl_gene_id: c2049
symbol: ydhO
gene_biotype: protein_coding
description:
  Hypothetical protein ydhO precursor; Escherichia coli K-12 ortholog: b1655; Escherichia coli O157:H7 ortholog: z2677.


ensembl_gene_id: c2050
symbol: sodB
gene_biotype: protein_coding
description:
  Superoxide dismutase (Fe); Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: c2051
symbol: ydhP
gene_biotype: protein_coding
description:
  Hypothetical transport protein ydhP; Escherichia coli K-12 ortholog: b1657; Escherichia coli O157:H7 ortholog: z2679.


ensembl_gene_id: c2052
symbol: purR
gene_biotype: protein_coding
description:
  Purine nucleotide synthesis repressor; Is the main repressor of the genes involved in the de novo synthesis of purine nucleotides, regulating purB, purC, purEK, purF, purHD, purL, purMN and guaBA expression. PurR is allosterically activated to bind its cognate DNA by binding the purine corepressors, hypoxanthine or guanine, thereby effecting transcription repression.


ensembl_gene_id: c2053
symbol: ydhB
gene_biotype: protein_coding
description:
  Hypothetical transcriptional regulator ydhB; Escherichia coli K-12 ortholog: b1659; Escherichia coli O157:H7 ortholog: z2682; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: c2054
symbol: ydhC
gene_biotype: protein_coding
description:
  Hypothetical transport protein ydhC; Escherichia coli K-12 ortholog: b1660; Escherichia coli O157:H7 ortholog: z2685.


ensembl_gene_id: c2055
symbol: cfa
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase; Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; Belongs to the CFA/CMAS family.


ensembl_gene_id: c2056
symbol: ribE
gene_biotype: protein_coding
description:
  Riboflavin synthase alpha chain; Escherichia coli K-12 ortholog: b1662; Escherichia coli O157:H7 ortholog: z2688.


ensembl_gene_id: c2057
symbol: ydhE
gene_biotype: protein_coding
description:
  Multidrug resistance protein norM; Multidrug efflux pump that functions probably as a Na(+)/drug antiporter; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. MdtK subfamily.


ensembl_gene_id: c2058
symbol: ydhQ
gene_biotype: protein_coding
description:
  Hypothetical protein ydhQ; Escherichia coli K-12 ortholog: b1664; Escherichia coli O157:H7 ortholog: z2691.


ensembl_gene_id: c2059
symbol: c2059
gene_biotype: protein_coding
description:
  Protein ydhR precursor; Escherichia coli K-12 ortholog: b1667; Escherichia coli O157:H7 ortholog: z2694.


ensembl_gene_id: c2060
symbol: ydhS
gene_biotype: protein_coding
description:
  Hypothetical protein ydhS; Escherichia coli K-12 ortholog: b1668; Escherichia coli O157:H7 ortholog: z2695.


ensembl_gene_id: c2062
symbol: ydhT
gene_biotype: protein_coding
description:
  Hypothetical protein ydhT; Escherichia coli K-12 ortholog: b1669; Escherichia coli O157:H7 ortholog: z2696.


ensembl_gene_id: c2064
symbol: ydhU
gene_biotype: protein_coding
description:
  PhsC protein homolog; Escherichia coli K-12 ortholog: b1670; Escherichia coli O157:H7 ortholog: z2697.


ensembl_gene_id: c2065
symbol: c2065
gene_biotype: protein_coding
description:
  Putative ferredoxin-like protein ydhX; Escherichia coli K-12 ortholog: b1671; Escherichia coli O157:H7 ortholog: z2698.


ensembl_gene_id: c2066
symbol: ydhW
gene_biotype: protein_coding
description:
  Hypothetical protein ydhW; Escherichia coli K-12 ortholog: b1672; Escherichia coli O157:H7 ortholog: z2700.


ensembl_gene_id: c2067
symbol: ydhV
gene_biotype: protein_coding
description:
  Hypothetical protein ydhV; Escherichia coli K-12 ortholog: b1673; Escherichia coli O157:H7 ortholog: z2701.


ensembl_gene_id: c2068
symbol: c2068
gene_biotype: protein_coding
description:
  Putative ferredoxin-like protein ydhY; Escherichia coli K-12 ortholog: b1674; Escherichia coli O157:H7 ortholog: z2702.


ensembl_gene_id: c2069
symbol: ydhZ
gene_biotype: protein_coding
description:
  Hypothetical protein ydhZ; In vitro catalyzes the addition of water to fumarate, forming malate. Cannot catalyze the reverse reaction. Cannot use the cis-isomer maleate as substrate; Belongs to the FumD family.


ensembl_gene_id: c2071
symbol: pykF
gene_biotype: protein_coding
description:
  Pyruvate kinase I; Escherichia coli K-12 ortholog: b1676; Escherichia coli O157:H7 ortholog: z2704; Belongs to the pyruvate kinase family.


ensembl_gene_id: c2072
symbol: lpp
gene_biotype: protein_coding
description:
  Major outer membrane lipoprotein precursor; A highly abundant outer membrane lipoprotein that controls the distance between the inner and outer membranes. The only protein known to be covalently linked to the peptidoglycan network (PGN). Also non-covalently binds the PGN. The link between the cell outer membrane and PGN contributes to maintenance of the structural and functional integrity of the cell envelope, and maintains the correct distance between the PGN and the outer membrane.


ensembl_gene_id: c2073
symbol: ynhG
gene_biotype: protein_coding
description:
  Hypothetical protein ynhG precursor; Escherichia coli K-12 ortholog: b1678; Escherichia coli O157:H7 ortholog: z2706.


ensembl_gene_id: c2074
symbol: ynhA
gene_biotype: protein_coding
description:
  SufE protein; Participates in cysteine desulfuration mediated by SufS. Cysteine desulfuration mobilizes sulfur from L-cysteine to yield L- alanine and constitutes an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Functions as a sulfur acceptor for SufS, by mediating the direct transfer of the sulfur atom from the S-sulfanylcysteine of SufS, an intermediate product of cysteine desulfuration process; Belongs to the SufE family.


ensembl_gene_id: c2075
symbol: sufS
gene_biotype: protein_coding
description:
  Selenocysteine lyase; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo.


ensembl_gene_id: c2077
symbol: ynhD
gene_biotype: protein_coding
description:
  Probable ATP-dependent transporter sufC; Escherichia coli K-12 ortholog: b1682; Escherichia coli O157:H7 ortholog: z2710.


ensembl_gene_id: c2079
symbol: ydiC
gene_biotype: protein_coding
description:
  SufA protein; Escherichia coli K-12 ortholog: b1684; Escherichia coli O157:H7 ortholog: z2712; Belongs to the HesB/IscA family.


