# geneInfo

ensembl_gene_id: PFL_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.


ensembl_gene_id: PFL_0002
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: PFL_0003
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.


ensembl_gene_id: PFL_0004
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: PFL_0008
symbol: PFL_0008
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_0010
symbol: PFL_0010
gene_biotype: protein_coding
description:
  CHASE domain/sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226.


ensembl_gene_id: PFL_0011
symbol: PFL_0011
gene_biotype: protein_coding
description:
  Putative acylhomoserine lactone synthase HdtS; Identified by similarity to GB:AAG30826.1; match to protein family HMM PF01553.


ensembl_gene_id: PFL_0012
symbol: gmhB
gene_biotype: protein_coding
description:
  Putative D,D-heptose 1,7-bisphosphate phosphatase; Identified by similarity to SP:P63228; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.


ensembl_gene_id: PFL_0013
symbol: glyS
gene_biotype: protein_coding
description:
  glycine--tRNA ligase, beta subunit; Identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211.


ensembl_gene_id: PFL_0014
symbol: glyQ
gene_biotype: protein_coding
description:
  glycine--tRNA ligase, alpha subunit; Identified by similarity to SP:P00960; match to protein family HMM PF02091; match to protein family HMM TIGR00388.


ensembl_gene_id: PFL_0015
symbol: tag_2
gene_biotype: protein_coding
description:
  DNA-3-methyladenine glycosylase I; Identified by similarity to SP:P05100; match to protein family HMM PF03352; match to protein family HMM TIGR00624.


ensembl_gene_id: PFL_0016
symbol: PFL_0016
gene_biotype: protein_coding
description:
  Putative lipid A biosynthesis lauroyl acyltransferase; Identified by similarity to SP:P24187; match to protein family HMM PF03279.


ensembl_gene_id: PFL_0018
symbol: PFL_0018
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.


ensembl_gene_id: PFL_0019
symbol: trkA
gene_biotype: protein_coding
description:
  Trk system potassium uptake protein TrkA; Identified by similarity to SP:P0AGI8; match to protein family HMM PF02080; match to protein family HMM PF02254.


ensembl_gene_id: PFL_0020
symbol: rsmB
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.


ensembl_gene_id: PFL_0021
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: PFL_0022
symbol: def_2
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: PFL_0024
symbol: dprA
gene_biotype: protein_coding
description:
  DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.


ensembl_gene_id: PFL_0025
symbol: tsaC
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.


ensembl_gene_id: PFL_0026
symbol: qor_2
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; Identified by similarity to SP:P28304; match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: PFL_0027
symbol: hemF
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: PFL_0028
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: PFL_0029
symbol: PFL_0029
gene_biotype: protein_coding
description:
  Inorganic anion transporter, SulP family; Identified by match to protein family HMM PF00916; match to protein family HMM PF01740.


ensembl_gene_id: PFL_0030
symbol: PFL_0030
gene_biotype: protein_coding
description:
  Choline ABC transporter, periplasmic choline-binding protein; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR03414.


ensembl_gene_id: PFL_0031
symbol: betC
gene_biotype: protein_coding
description:
  Choline-sulfatase; Identified by similarity to SP:O69787; match to protein family HMM PF00884; match to protein family HMM TIGR03417.


ensembl_gene_id: PFL_0032
symbol: PFL_0032
gene_biotype: protein_coding
description:
  Putative choline sulfate-utilization transcription factor; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR03418; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0036
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: PFL_0037
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: PFL_0038
symbol: trpI
gene_biotype: protein_coding
description:
  HTH-type transcriptional regulator TrpI; Identified by similarity to SP:P34818; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0042
symbol: PFL_0042
gene_biotype: protein_coding
description:
  Luciferase family oxidoreductase, group 1; Identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558.


ensembl_gene_id: PFL_0043
symbol: osmC
gene_biotype: protein_coding
description:
  Peroxiredoxin OsmC; Identified by similarity to SP:P0C0L2; match to protein family HMM PF02566; match to protein family HMM TIGR03562.


ensembl_gene_id: PFL_0048
symbol: PFL_0048
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.


ensembl_gene_id: PFL_0051
symbol: PFL_0051
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF09526; match to protein family HMM TIGR02443.


ensembl_gene_id: PFL_0052
symbol: PFL_0052
gene_biotype: protein_coding
description:
  Dual specificity phosphatase, catalytic domain protein; Identified by match to protein family HMM PF00782; match to protein family HMM PF03162.


ensembl_gene_id: PFL_0054
symbol: PFL_0054
gene_biotype: protein_coding
description:
  Gluconate 2-dehydrogenase flavoprotein; Identified by similarity to GB:AAC45885.1; match to protein family HMM PF00732.


ensembl_gene_id: PFL_0055
symbol: PFL_0055
gene_biotype: protein_coding
description:
  Gluconate 2-dehydrogenase cytochrome c subunit; Identified by similarity to SP:O34215; match to protein family HMM PF00034.


ensembl_gene_id: PFL_0058
symbol: cah
gene_biotype: protein_coding
description:
  Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: PFL_0059
symbol: PFL_0059
gene_biotype: protein_coding
description:
  Inorganic anion transporter, SulP family; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916.


ensembl_gene_id: PFL_0061
symbol: ctaC
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: PFL_0062
symbol: ctaD
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: PFL_0063
symbol: ctaG
gene_biotype: protein_coding
description:
  Putative cytochrome c oxidase assembly protein; Identified by similarity to SP:P56940; match to protein family HMM PF04442.


ensembl_gene_id: PFL_0064
symbol: ctaE
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit III; Identified by similarity to SP:P06030; match to protein family HMM PF00510.


ensembl_gene_id: PFL_0069
symbol: cyoE_2
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: PFL_0071
symbol: metQ2
gene_biotype: protein_coding
description:
  D-methionine ABC transporter, periplasmic methionine-binding lipoprotein MetQ; Protein identified by sequence similarity to MetQ in E. coli. (Swiss-Prot: P28635); identified by match to protein family HMM PF03180.


ensembl_gene_id: PFL_0072
symbol: metI2
gene_biotype: protein_coding
description:
  D-methionine ABC transporter, permease protein MetI; Identified by similarity to SP:P31547; match to protein family HMM PF00528.


ensembl_gene_id: PFL_0073
symbol: metN2
gene_biotype: protein_coding
description:
  D-methionine ABC transporter, ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PFL_0076
symbol: znuB
gene_biotype: protein_coding
description:
  High-affinity zinc ABC transporter, permease protein ZnuB; Identified by similarity to SP:P39832; match to protein family HMM PF00950.


ensembl_gene_id: PFL_0077
symbol: znuC
gene_biotype: protein_coding
description:
  High-affinity zinc ABC transporter, ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.


ensembl_gene_id: PFL_0079
symbol: znuA
gene_biotype: protein_coding
description:
  High-affinity zinc ABC transporter, periplasmic zinc-binding protein ZnuA; Identified by similarity to SP:P39172; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: PFL_0080
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Identified by similarity to SP:P29364; match to protein family HMM PF01636; match to protein family HMM TIGR00938; Belongs to the pseudomonas-type ThrB family.


ensembl_gene_id: PFL_0082
symbol: polA
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: PFL_0083
symbol: ysxC
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: PFL_0085
symbol: dsbA
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein DsbA; Identified by similarity to GB:AAO13005.2; match to protein family HMM PF01323.


ensembl_gene_id: PFL_0087
symbol: PFL_0087
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_0088
symbol: amiD
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase AmiD; Identified by similarity to SP:P75820; match to protein family HMM PF01471; match to protein family HMM PF01510.


ensembl_gene_id: PFL_0089
symbol: PFL_0089
gene_biotype: protein_coding
description:
  Cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563.


ensembl_gene_id: PFL_0090
symbol: kinB
gene_biotype: protein_coding
description:
  Alginate biosynthesis sensor protein KinB; Identified by similarity to SP:O34206; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_0091
symbol: algB
gene_biotype: protein_coding
description:
  Alginate biosynthesis transcriptional regulatory protein AlgB; Identified by similarity to SP:P23747; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728.


ensembl_gene_id: PFL_0095
symbol: gltP
gene_biotype: protein_coding
description:
  Glutamate/aspartate:proton symporter; Catalyzes the proton-dependent transport of glutamate and aspartate; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. GltP subfamily.


ensembl_gene_id: PFL_0100
symbol: PFL_0100
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056.


ensembl_gene_id: PFL_0102
symbol: PFL_0102
gene_biotype: protein_coding
description:
  Peptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.


ensembl_gene_id: PFL_0103
symbol: PFL_0103
gene_biotype: protein_coding
description:
  Na/Pi-cotransporter II-like protein; Identified by similarity to SP:P0AF44; match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013.


ensembl_gene_id: PFL_0105
symbol: citN
gene_biotype: protein_coding
description:
  Citrate transporter; Identified by similarity to SP:P42308; match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM TIGR00784.


ensembl_gene_id: PFL_0106
symbol: PFL_0106
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:H82962; match to protein family HMM PF04828.


ensembl_gene_id: PFL_0108
symbol: PFL_0108
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAN65784.1; match to protein family HMM PF09498; match to protein family HMM TIGR02448.


ensembl_gene_id: PFL_0109
symbol: PFL_0109
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF09498; match to protein family HMM TIGR02448.


ensembl_gene_id: PFL_0112
symbol: PFL_0112
gene_biotype: protein_coding
description:
  Succinate CoA transferase; Identified by similarity to SP:P38946; match to protein family HMM PF02550; match to protein family HMM TIGR03458.


ensembl_gene_id: PFL_0113
symbol: pntB
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: PFL_0115
symbol: pntAA
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase, alpha subunit part 1; Identified by similarity to SP:Q60164; match to protein family HMM PF01262; match to protein family HMM PF05222.


ensembl_gene_id: PFL_0116
symbol: gcdR
gene_biotype: protein_coding
description:
  Transcriptional regulator GcdR; Identified by similarity to GB:ABM69269.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0117
symbol: gcdH
gene_biotype: protein_coding
description:
  glutaryl-CoA dehydrogenase; Identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: PFL_0118
symbol: PFL_0118
gene_biotype: protein_coding
description:
  CoA-transferase, family III; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.


ensembl_gene_id: PFL_0125
symbol: foxA
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferrioxamine receptor; Transducer; identified by similarity to SP:Q01674; match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_0126
symbol: PFL_0126
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to SP:P23485; match to protein family HMM PF04773.


ensembl_gene_id: PFL_0127
symbol: PFL_0127
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_0128
symbol: pctA_2
gene_biotype: protein_coding
description:
  Chemotactic transducer PctA; Identified by similarity to GB:BAA23412.1; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743.


ensembl_gene_id: PFL_0131
symbol: lapD
gene_biotype: protein_coding
description:
  Cyclic dimeric GMP binding protein LapD; Identified by similarity to GB:ABA71875.1; similarity to GB:ABI54127.1; match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_0133
symbol: lapA
gene_biotype: protein_coding
description:
  Large adhesive protein; Identified by similarity to GB:ABA71877.1; match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR03661.


ensembl_gene_id: PFL_0134
symbol: PFL_0134
gene_biotype: protein_coding
description:
  Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.


ensembl_gene_id: PFL_0135
symbol: PFL_0135
gene_biotype: protein_coding
description:
  Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03375.


ensembl_gene_id: PFL_0136
symbol: PFL_0136
gene_biotype: protein_coding
description:
  Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.


ensembl_gene_id: PFL_0141
symbol: PFL_0141
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0143
symbol: PFL_0143
gene_biotype: protein_coding
description:
  Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529.


ensembl_gene_id: PFL_0144
symbol: PFL_0144
gene_biotype: protein_coding
description:
  Efflux transporter, outer membrane factor lipoprotein, NodT family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.


ensembl_gene_id: PFL_0146
symbol: PFL_0146
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to SP:P23485; similarity to PIR:S46356; match to protein family HMM PF04773.


ensembl_gene_id: PFL_0147
symbol: PFL_0147
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferrichrome receptor; Transducer; identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_0151
symbol: PFL_0151
gene_biotype: protein_coding
description:
  Putative YbaK/prolyl-tRNA synthetases associated domain protein; Identified by match to protein family HMM PF04073.


ensembl_gene_id: PFL_0154
symbol: PFL_0154
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; Identified by similarity to SP:P0A8W2; match to protein family HMM PF01047.


ensembl_gene_id: PFL_0156
symbol: PFL_0156
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAN65810.1; match to protein family HMM PF07869.


ensembl_gene_id: PFL_0157
symbol: PFL_0157
gene_biotype: protein_coding
description:
  Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_0161
symbol: pgaA
gene_biotype: protein_coding
description:
  Biofilm PGA synthesis protein PgaA; Identified by similarity to SP:P69434; match to protein family HMM PF00515; match to protein family HMM PF07719.


ensembl_gene_id: PFL_0162
symbol: pgaB
gene_biotype: protein_coding
description:
  Biofilm PGA synthesis lipoprotein PgaB; Identified by similarity to SP:P75906; match to protein family HMM PF01522.


ensembl_gene_id: PFL_0163
symbol: pgaC
gene_biotype: protein_coding
description:
  Biofilm PGA synthesis N-glycosyltransferase PgaC; Identified by similarity to SP:P75905; match to protein family HMM PF00535; match to protein family HMM PF03142.


ensembl_gene_id: PFL_0166
symbol: PFL_0166
gene_biotype: protein_coding
description:
  Adhesin/hemagglutinin, HecA family; Identified by similarity to GB:AAO56709.1; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901.


ensembl_gene_id: PFL_0171
symbol: PFL_0171
gene_biotype: protein_coding
description:
  Putative conserved hypothetical protein TIGR00481; Identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481.


ensembl_gene_id: PFL_0173
symbol: PFL_0173
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_0185
symbol: gabD
gene_biotype: protein_coding
description:
  Succinate-semialdehyde dehydrogenase; Identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_0186
symbol: gabT
gene_biotype: protein_coding
description:
  4-aminobutyrate transaminase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PFL_0187
symbol: PFL_0187
gene_biotype: protein_coding
description:
  Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF08668.


ensembl_gene_id: PFL_0188
symbol: PFL_0188
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_0190
symbol: PFL_0190
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_0192
symbol: sbp
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, periplasmic sulfate-binding protein; Identified by similarity to SP:P0AG78; match to protein family HMM PF01547; match to protein family HMM TIGR00971.


ensembl_gene_id: PFL_0193
symbol: cysT
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PFL_0194
symbol: cysW
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysW; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140.


ensembl_gene_id: PFL_0195
symbol: cysA
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PFL_0198
symbol: uraH_2
gene_biotype: protein_coding
description:
  Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.


ensembl_gene_id: PFL_0199
symbol: PFL_0199
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:P0AEQ1; match to protein family HMM PF03928.


ensembl_gene_id: PFL_0200
symbol: PFL_0200
gene_biotype: protein_coding
description:
  DNA-binding heavy metal response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387.


ensembl_gene_id: PFL_0206
symbol: atsC
gene_biotype: protein_coding
description:
  Sulfate ester ABC transporter, ATP-binding protein AtsC; Identified by similarity to GB:AAD31787.1; match to protein family HMM PF00005.


ensembl_gene_id: PFL_0207
symbol: atsB
gene_biotype: protein_coding
description:
  Sulfate ester ABC transporter, permease protein AtsB; Identified by similarity to GB:AAD31786.2; match to protein family HMM PF00528.


ensembl_gene_id: PFL_0208
symbol: atsR
gene_biotype: protein_coding
description:
  Sulfate ester ABC transporter, periplasmic sulfate ester-binding protein AtsR; Identified by similarity to GB:AAD31785.1; match to protein family HMM PF09084.


ensembl_gene_id: PFL_0209
symbol: PFL_0209
gene_biotype: protein_coding
description:
  Transcriptional regulator SftR-related protein; Identified by similarity to GB:AAD31783.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0210
symbol: atsK
gene_biotype: protein_coding
description:
  Alkylsulfatase AtsK; Identified by similarity to GB:AAD31784.1; match to protein family HMM PF02668.


ensembl_gene_id: PFL_0212
symbol: sftR
gene_biotype: protein_coding
description:
  Transcriptional regulator SftR; Identified by similarity to GB:AAD31783.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0213
symbol: sftP
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane receptor SftP; Receptor Kahnert et al. 2002; identified by similarity to GB:AAF02095.1; match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: PFL_0222
symbol: PFL_0222
gene_biotype: protein_coding
description:
  Putative guanine deaminase; Identified by similarity to SP:O34598; match to protein family HMM PF00383.


ensembl_gene_id: PFL_0225
symbol: tonB2
gene_biotype: protein_coding
description:
  TonB2 protein; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to SP:Q9RMT3; match to protein family HMM PF03544; match to protein family HMM TIGR01352.


ensembl_gene_id: PFL_0229
symbol: PFL_0229
gene_biotype: protein_coding
description:
  Sigma-54-binding protein; Identified by similarity to SP:P17899; match to protein family HMM PF00158.


ensembl_gene_id: PFL_0231
symbol: PFL_0231
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_0233
symbol: PFL_0233
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.


ensembl_gene_id: PFL_0234
symbol: PFL_0234
gene_biotype: protein_coding
description:
  Putative amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P27676; match to protein family HMM PF00497.


ensembl_gene_id: PFL_0236
symbol: PFL_0236
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_0238
symbol: PFL_0238
gene_biotype: protein_coding
description:
  RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family, permease protein; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PFL_0239
symbol: PFL_0239
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_0242
symbol: metQ1
gene_biotype: protein_coding
description:
  D-methionine ABC transporter, periplasmic methionine-binding lipoprotein MetQ; Identified by similarity to SP:P28635; match to protein family HMM PF03180.


ensembl_gene_id: PFL_0244
symbol: PFL_0244
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF02771; match to protein family HMM PF08028; match to protein family HMM TIGR04022.


ensembl_gene_id: PFL_0246
symbol: PFL_0246
gene_biotype: protein_coding
description:
  Polar amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005.


ensembl_gene_id: PFL_0247
symbol: PFL_0247
gene_biotype: protein_coding
description:
  Polar amino acid ABC transporter, permease protein; Identified by similarity to SP:P0AFT4; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_0248
symbol: PFL_0248
gene_biotype: protein_coding
description:
  Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.


ensembl_gene_id: PFL_0249
symbol: dcyD
gene_biotype: protein_coding
description:
  D-cysteine desulfhydrase; Identified by similarity to SP:P76316; match to protein family HMM PF00291; match to protein family HMM TIGR01275.


ensembl_gene_id: PFL_0251
symbol: betT
gene_biotype: protein_coding
description:
  High-affinity choline transporter, BCCT family, BetT; Identified by similarity to SP:P0ABC9; match to protein family HMM PF02028; match to protein family HMM TIGR00842; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: PFL_0252
symbol: PFL_0252
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.


ensembl_gene_id: PFL_0254
symbol: PFL_0254
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.


ensembl_gene_id: PFL_0255
symbol: PFL_0255
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: PFL_0257
symbol: yghZ
gene_biotype: protein_coding
description:
  L-glyceraldehyde 3-phosphate reductase YghZ; Identified by similarity to SP:Q46851; match to protein family HMM PF00248.


ensembl_gene_id: PFL_0259
symbol: PFL_0259
gene_biotype: protein_coding
description:
  Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.


ensembl_gene_id: PFL_0264
symbol: PFL_0264
gene_biotype: protein_coding
description:
  Phosphopantetheine attachment site domain protein; Identified by match to protein family HMM PF00550.


ensembl_gene_id: PFL_0268
symbol: lpdA_2
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Identified by similarity to SP:P14218; match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: PFL_0270
symbol: tauC
gene_biotype: protein_coding
description:
  Taurine ABC transporter, permease protein; Identified by similarity to SP:Q47539; match to protein family HMM PF00528.


ensembl_gene_id: PFL_0271
symbol: tauB
gene_biotype: protein_coding
description:
  Taurine ABC transporter, ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.


ensembl_gene_id: PFL_0272
symbol: tauA
gene_biotype: protein_coding
description:
  Taurine ABC transporter, periplasmic taurine-binding protein; Identified by similarity to SP:Q47537; match to protein family HMM PF04069; match to protein family HMM PF09084; match to protein family HMM TIGR01729.


ensembl_gene_id: PFL_0273
symbol: gshA
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase; Identified by match to protein family HMM PF04262; match to protein family HMM TIGR01434; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.


ensembl_gene_id: PFL_0275
symbol: PFL_0275
gene_biotype: protein_coding
description:
  S1 RNA binding domain protein; Identified by match to protein family HMM PF00575; match to protein family HMM PF09371.


ensembl_gene_id: PFL_0276
symbol: ompR
gene_biotype: protein_coding
description:
  DNA-binding response regulator OmpR; Identified by similarity to SP:P03025; similarity to GB:AAS48175.1; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_0277
symbol: envZ
gene_biotype: protein_coding
description:
  Osmolarity sensor protein EnvZ; Identified by similarity to SP:P41406; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_0278
symbol: rimK
gene_biotype: protein_coding
description:
  Ribosomal protein S6 modification protein; Identified by match to protein family HMM PF02655; match to protein family HMM PF08443; match to protein family HMM TIGR00768.


ensembl_gene_id: PFL_0281
symbol: hslR
gene_biotype: protein_coding
description:
  Heat shock protein 15; Identified by similarity to SP:P0ACG8; match to protein family HMM PF01479; Belongs to the HSP15 family.


ensembl_gene_id: PFL_0283
symbol: hslO
gene_biotype: protein_coding
description:
  Chaperonin HslO; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: PFL_0284
symbol: pckA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.


ensembl_gene_id: PFL_0287
symbol: PFL_0287
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.


ensembl_gene_id: PFL_0289
symbol: PFL_0289
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase, RecQ family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614.


ensembl_gene_id: PFL_0292
symbol: PFL_0292
gene_biotype: protein_coding
description:
  Surface antigen protein, Rickettsia 17 kDa family; Identified by match to protein family HMM PF05433.


ensembl_gene_id: PFL_0293
symbol: PFL_0293
gene_biotype: protein_coding
description:
  Oxidoreductase alpha (molybdopterin) subunit; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: PFL_0295
symbol: PFL_0295
gene_biotype: protein_coding
description:
  Putative phospholipid-binding domain/LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF04972.


ensembl_gene_id: PFL_0296
symbol: PFL_0296
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.


ensembl_gene_id: PFL_0297
symbol: nudE
gene_biotype: protein_coding
description:
  ADP compounds hydrolase NudE; Identified by similarity to SP:P45799; match to protein family HMM PF00293.


ensembl_gene_id: PFL_0298
symbol: cysQ
gene_biotype: protein_coding
description:
  3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.


ensembl_gene_id: PFL_0299
symbol: PFL_0299
gene_biotype: protein_coding
description:
  Putative thioesterase domain protein; Identified by match to protein family HMM PF09500; match to protein family HMM TIGR02447.


ensembl_gene_id: PFL_0300
symbol: PFL_0300
gene_biotype: protein_coding
description:
  Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728.


ensembl_gene_id: PFL_0301
symbol: PFL_0301
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: PFL_0302
symbol: rfbD
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: PFL_0303
symbol: rfbC
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: PFL_0304
symbol: rfbA
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: PFL_0305
symbol: rfbB
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: PFL_0306
symbol: PFL_0306
gene_biotype: protein_coding
description:
  Phosphotransferase family/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01636.


ensembl_gene_id: PFL_0307
symbol: aguB
gene_biotype: protein_coding
description:
  N-carbamoylputrescine amidase; Identified by similarity to GB:AAG03682.1; match to protein family HMM PF00795; match to protein family HMM TIGR03381.


ensembl_gene_id: PFL_0308
symbol: aguA
gene_biotype: protein_coding
description:
  Agmatine deiminase; Mediates the hydrolysis of agmatine into N- carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine.


ensembl_gene_id: PFL_0310
symbol: PFL_0310
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_0313
symbol: oprQ
gene_biotype: protein_coding
description:
  Outer membrane porin OprE3; Identified by similarity to GB:BAA22267.1; match to protein family HMM PF03573.


ensembl_gene_id: PFL_0320
symbol: PFL_0320
gene_biotype: protein_coding
description:
  Putative acid phosphatase; Identified by similarity to GB:BAA84942.1; match to protein family HMM PF01569.


ensembl_gene_id: PFL_0322
symbol: PFL_0322
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF06742; match to protein family HMM PF06863.


ensembl_gene_id: PFL_0325
symbol: gpuA
gene_biotype: protein_coding
description:
  3-guanidinopropionase GpuA; Identified by similarity to GB:AAG03677.1; match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.


ensembl_gene_id: PFL_0326
symbol: gpuP
gene_biotype: protein_coding
description:
  3-guanidinopropionate transport protein GpuP; Identified by similarity to GB:AAG03676.1; match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PFL_0329
symbol: fdsA
gene_biotype: protein_coding
description:
  Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.


ensembl_gene_id: PFL_0330
symbol: fdsB
gene_biotype: protein_coding
description:
  Formate dehydrogenase, beta subunit; Identified by similarity to GB:CAA11234.1; match to protein family HMM PF01512.


ensembl_gene_id: PFL_0331
symbol: fdsG
gene_biotype: protein_coding
description:
  Formate dehydrogenase, gamma subunit; Identified by similarity to GB:CAA11233.1; match to protein family HMM PF01257.


ensembl_gene_id: PFL_0332
symbol: PFL_0332
gene_biotype: protein_coding
description:
  Polyamine/opine/phosphonate ABC transporter, POPT family, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: PFL_0334
symbol: PFL_0334
gene_biotype: protein_coding
description:
  Polyamine/opine/phosphonate ABC transporter, POPT family, periplasmic substrate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_0336
symbol: PFL_0336
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0338
symbol: PFL_0338
gene_biotype: protein_coding
description:
  FAD-binding domain protein; Identified by match to protein family HMM PF01565; match to protein family HMM PF08031.


ensembl_gene_id: PFL_0340
symbol: PFL_0340
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_0341
symbol: PFL_0341
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_0342
symbol: PFL_0342
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to GB:AAG04277.1; match to protein family HMM PF00497.


ensembl_gene_id: PFL_0343
symbol: PFL_0343
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005.


ensembl_gene_id: PFL_0344
symbol: gabP
gene_biotype: protein_coding
description:
  GABA permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845; match to protein family HMM TIGR01773.


ensembl_gene_id: PFL_0348
symbol: PFL_0348
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614; match to protein family HMM PF09339.


ensembl_gene_id: PFL_0349
symbol: hutG_1
gene_biotype: protein_coding
description:
  Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.


ensembl_gene_id: PFL_0350
symbol: gltS
gene_biotype: protein_coding
description:
  Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.


ensembl_gene_id: PFL_0357
symbol: PFL_0357
gene_biotype: protein_coding
description:
  Fe(2+) trafficking family protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.


ensembl_gene_id: PFL_0362
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: PFL_0364
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007.


ensembl_gene_id: PFL_0365
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: PFL_0368
symbol: PFL_0368
gene_biotype: protein_coding
description:
  Processing peptidase domain protein; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.


ensembl_gene_id: PFL_0371
symbol: gpmI
gene_biotype: protein_coding
description:
  2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: PFL_0373
symbol: grxC
gene_biotype: protein_coding
description:
  Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: PFL_0374
symbol: secB
gene_biotype: protein_coding
description:
  Protein-export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: PFL_0375
symbol: trmL
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 2; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: PFL_0377
symbol: glnG
gene_biotype: protein_coding
description:
  Nitrogen regulation protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: PFL_0378
symbol: glnL
gene_biotype: protein_coding
description:
  Nitrogen regulation protein NR(II); Identified by similarity to SP:P06712; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448.


ensembl_gene_id: PFL_0379
symbol: PFL_0379
gene_biotype: protein_coding
description:
  methylated-DNA-[protein]-cysteine S-methyltransferase, ADA family; Identified by similarity to SP:P06134; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM TIGR00589.


ensembl_gene_id: PFL_0380
symbol: PFL_0380
gene_biotype: protein_coding
description:
  Transporter, major facilitator family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.


ensembl_gene_id: PFL_0382
symbol: PFL_0382
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.


ensembl_gene_id: PFL_0386
symbol: glnA_2
gene_biotype: protein_coding
description:
  Glutamine synthetase, type I; Identified by similarity to SP:P0A9C5; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.


ensembl_gene_id: PFL_0387
symbol: thiI
gene_biotype: protein_coding
description:
  Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.


ensembl_gene_id: PFL_0388
symbol: typA
gene_biotype: protein_coding
description:
  GTP-binding protein TypA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394.


ensembl_gene_id: PFL_0389
symbol: PFL_0389
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:C83043; match to protein family HMM PF03692.


ensembl_gene_id: PFL_0390
symbol: glgP
gene_biotype: protein_coding
description:
  Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: PFL_0393
symbol: fbp
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase; Identified by similarity to SP:P19911; match to protein family HMM PF00316.


ensembl_gene_id: PFL_0395
symbol: pctC
gene_biotype: protein_coding
description:
  Chemotactic transducer PctC; Identified by similarity to GB:BAA23410.1; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743.


ensembl_gene_id: PFL_0397
symbol: blc
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein Blc; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.


ensembl_gene_id: PFL_0398
symbol: hutF
gene_biotype: protein_coding
description:
  Formimidoylglutamate deiminase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.


ensembl_gene_id: PFL_0399
symbol: hutC
gene_biotype: protein_coding
description:
  Histidine utilization repressor; Identified by similarity to SP:P12380; similarity to SP:P22773; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018.


ensembl_gene_id: PFL_0400
symbol: PFL_0400
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:P24696; match to protein family HMM PF05962.


ensembl_gene_id: PFL_0402
symbol: PFL_0402
gene_biotype: protein_coding
description:
  Permease, cytosine/purine, uracil, thiamine, allantoin family; Identified by match to protein family HMM PF02133; Belongs to the purine-cytosine permease (2.A.39) family.


ensembl_gene_id: PFL_0403
symbol: hisX
gene_biotype: protein_coding
description:
  Histidine ABC transporter, periplasmic histidine-binding protein; Identified by similarity to GB:AAF78097.1; match to protein family HMM PF04069.


ensembl_gene_id: PFL_0404
symbol: hisW
gene_biotype: protein_coding
description:
  Histidine ABC transporter, permease protein; Identified by similarity to GB:AAF78098.1; match to protein family HMM PF00528.


ensembl_gene_id: PFL_0405
symbol: hisV
gene_biotype: protein_coding
description:
  Histidine ABC transporter, ATP-binding protein; Identified by similarity to GB:AAF78099.1; match to protein family HMM PF00005.


ensembl_gene_id: PFL_0406
symbol: hutH_1
gene_biotype: protein_coding
description:
  Histidine ammonia-lyase; Identified by similarity to SP:P10944; match to protein family HMM PF00221; match to protein family HMM TIGR01225.


ensembl_gene_id: PFL_0407
symbol: hutH_2
gene_biotype: protein_coding
description:
  Histidine ammonia-lyase; Identified by similarity to SP:P21310; match to protein family HMM PF00221; match to protein family HMM TIGR01225.


ensembl_gene_id: PFL_0408
symbol: proY
gene_biotype: protein_coding
description:
  Putative proline-specific permease ProY; Identified by similarity to SP:P37460; match to protein family HMM PF00324.


ensembl_gene_id: PFL_0409
symbol: hutI
gene_biotype: protein_coding
description:
  Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224; Belongs to the metallo-dependent hydrolases superfamily. HutI family.


ensembl_gene_id: PFL_0410
symbol: hutG_2
gene_biotype: protein_coding
description:
  N-formylglutamate amidohydrolase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.


ensembl_gene_id: PFL_0411
symbol: pip
gene_biotype: protein_coding
description:
  Prolyl aminopeptidase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249; Belongs to the peptidase S33 family.


ensembl_gene_id: PFL_0412
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: PFL_0413
symbol: mdoG
gene_biotype: protein_coding
description:
  Periplasmic glucan biosynthesis protein MdoG; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: PFL_0414
symbol: mdoH
gene_biotype: protein_coding
description:
  Glucans biosynthesis glucosyltransferase H; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: PFL_0415
symbol: PFL_0415
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P30860; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: PFL_0416
symbol: PFL_0416
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_0417
symbol: PFL_0417
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005.


ensembl_gene_id: PFL_0418
symbol: PFL_0418
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.


ensembl_gene_id: PFL_0419
symbol: PFL_0419
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: PFL_0420
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: PFL_0421
symbol: tatB
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: PFL_0422
symbol: tatA
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: PFL_0423
symbol: hisE
gene_biotype: protein_coding
description:
  phosphoribosyl-ATP diphosphatase; Identified by match to protein family HMM PF01503; match to protein family HMM TIGR03188.


ensembl_gene_id: PFL_0424
symbol: hisI1
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase 1; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: PFL_0425
symbol: ubiB
gene_biotype: protein_coding
description:
  2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.


ensembl_gene_id: PFL_0427
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: PFL_0428
symbol: PFL_0428
gene_biotype: protein_coding
description:
  Putative polyhydroxyalkanoic acid system protein; Identified by match to protein family HMM PF09650; match to protein family HMM TIGR02610.


ensembl_gene_id: PFL_0429
symbol: phaI
gene_biotype: protein_coding
description:
  Poly(3-hydroxyalkanoate) granule-associated protein PhaI; Identified by similarity to GB:BAB78724.1; match to protein family HMM PF05597; match to protein family HMM TIGR01837.


ensembl_gene_id: PFL_0430
symbol: phaF
gene_biotype: protein_coding
description:
  Poly(3-hydroxyalkanoate) granule-associated protein PhaF; See Prieto et. al. 1999 (PMID: 9922249); identified by similarity to GB:BAB78723.1; similarity to GB:CAA09109.1; match to protein family HMM PF05597; match to protein family HMM TIGR01837.


ensembl_gene_id: PFL_0431
symbol: phaD
gene_biotype: protein_coding
description:
  Transcriptional regulator PhaD; Identified by similarity to GB:BAB78722.1; match to protein family HMM PF00440.


ensembl_gene_id: PFL_0432
symbol: phaC
gene_biotype: protein_coding
description:
  Poly(3-hydroxyalkanoate) synthase 2; Identified by similarity to GB:BAB78721.1; match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01839.


ensembl_gene_id: PFL_0433
symbol: phaZ
gene_biotype: protein_coding
description:
  Poly(3-hydroxyalkanoate) depolymerase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR02240.


ensembl_gene_id: PFL_0434
symbol: phaA
gene_biotype: protein_coding
description:
  Poly(3-hydroxyalkanoate) synthase 1; Identified by similarity to SP:P26494; match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01839.


ensembl_gene_id: PFL_0436
symbol: hslU
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: PFL_0437
symbol: hslV
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: PFL_0439
symbol: argS
gene_biotype: protein_coding
description:
  arginine--tRNA ligase; Identified by similarity to SP:P11875; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.


ensembl_gene_id: PFL_0440
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: PFL_0443
symbol: tme
gene_biotype: protein_coding
description:
  NADP-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949.


ensembl_gene_id: PFL_0444
symbol: mrcA
gene_biotype: protein_coding
description:
  Penicillin-binding protein 1A; Identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.


ensembl_gene_id: PFL_0445
symbol: pilM
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilM; See Martin et. al. 1995 (PMID: 7565110) for characterization in PAO1; identified by similarity to GB:AAG08429.1; match to protein family HMM TIGR01175.


ensembl_gene_id: PFL_0446
symbol: pilN
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilN; Identified by similarity to GB:AAA87403.1; match to protein family HMM PF05137; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_0447
symbol: pilO_2
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilO; Identified by similarity to GB:AAA87404.1; match to protein family HMM PF04350.


ensembl_gene_id: PFL_0448
symbol: pilP_1
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilP; Identified by similarity to GB:AAG08426.1; match to protein family HMM PF04351.


ensembl_gene_id: PFL_0449
symbol: pilQ
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilQ; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.


ensembl_gene_id: PFL_0450
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: PFL_0451
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.


ensembl_gene_id: PFL_0453
symbol: gltB
gene_biotype: protein_coding
description:
  Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.


ensembl_gene_id: PFL_0454
symbol: gltD
gene_biotype: protein_coding
description:
  Glutamate synthase, small subunit; Identified by similarity to SP:P09832; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318.


ensembl_gene_id: PFL_0455
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: PFL_0461
symbol: PFL_0461
gene_biotype: protein_coding
description:
  Putative 3-oxoacyl-[acyl-carrier-protein] synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: PFL_0462
symbol: PFL_0462
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR01831.


ensembl_gene_id: PFL_0467
symbol: PFL_0467
gene_biotype: protein_coding
description:
  Putative tryptophan halogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820.


ensembl_gene_id: PFL_0470
symbol: PFL_0470
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein carrier protein, LolA family; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: PFL_0472
symbol: PFL_0472
gene_biotype: protein_coding
description:
  Putative phenylalanine and histidine ammonia-lyase; Identified by match to protein family HMM PF00221.


ensembl_gene_id: PFL_0473
symbol: PFL_0473
gene_biotype: protein_coding
description:
  Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Identified by match to protein family HMM PF03279.


ensembl_gene_id: PFL_0475
symbol: PFL_0475
gene_biotype: protein_coding
description:
  AMP-binding domain protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF07977.


ensembl_gene_id: PFL_0477
symbol: acpP-2
gene_biotype: protein_coding
description:
  Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: PFL_0481
symbol: PFL_0481
gene_biotype: protein_coding
description:
  CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.


ensembl_gene_id: PFL_0482
symbol: PFL_0482
gene_biotype: protein_coding
description:
  Putative thioredoxin; Identified by similarity to SP:P33636; match to protein family HMM PF00085; match to protein family HMM TIGR01068.


ensembl_gene_id: PFL_0486
symbol: selO
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).


ensembl_gene_id: PFL_0487
symbol: kefA
gene_biotype: protein_coding
description:
  Putative potassium efflux system protein KefA; Identified by similarity to SP:P77338; match to protein family HMM PF00924.


ensembl_gene_id: PFL_0488
symbol: cvrA
gene_biotype: protein_coding
description:
  Cell volume regulation protein A; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily.


ensembl_gene_id: PFL_0495
symbol: putA
gene_biotype: protein_coding
description:
  Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_0496
symbol: putP
gene_biotype: protein_coding
description:
  Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PFL_0498
symbol: cysD
gene_biotype: protein_coding
description:
  O-acetylhomoserine sulfhydrylase; Identified by similarity to SP:O13326; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.


ensembl_gene_id: PFL_0499
symbol: PFL_0499
gene_biotype: protein_coding
description:
  Putative glycerol kinase; Identified by similarity to SP:P44400; match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.


ensembl_gene_id: PFL_0501
symbol: PFL_0501
gene_biotype: protein_coding
description:
  Oxidoreductase, FAD-dependent; Identified by match to protein family HMM PF01266; match to protein family HMM PF04324.


ensembl_gene_id: PFL_0502
symbol: PFL_0502
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00455; match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279.


ensembl_gene_id: PFL_0503
symbol: eutH_2
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein EutH; Identified by similarity to SP:P76552; match to protein family HMM PF04346.


ensembl_gene_id: PFL_0506
symbol: msrA_2
gene_biotype: protein_coding
description:
  Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: PFL_0507
symbol: PFL_0507
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_0508
symbol: aceF
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: PFL_0509
symbol: aceE_2
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring), homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: PFL_0510
symbol: glnE
gene_biotype: protein_coding
description:
  [glutamate--ammonia-ligase] adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal tra [...]


ensembl_gene_id: PFL_0511
symbol: rfaF
gene_biotype: protein_coding
description:
  Lipopolysaccharide heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195.


ensembl_gene_id: PFL_0512
symbol: rfaC
gene_biotype: protein_coding
description:
  Lipopolysaccharide heptosyltransferase I; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193.


ensembl_gene_id: PFL_0513
symbol: waaG
gene_biotype: protein_coding
description:
  Lipopolysaccharide core biosynthesis protein WaaG; Identified by similarity to GB:AAD33103.1; match to protein family HMM PF00534.


ensembl_gene_id: PFL_0514
symbol: waaP
gene_biotype: protein_coding
description:
  Lipopolysaccharide kinase WaaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.


ensembl_gene_id: PFL_0515
symbol: wapP
gene_biotype: protein_coding
description:
  Putative heptose kinase WapP; Identified by similarity to GB:AAG08393.1; match to protein family HMM PF06293.


ensembl_gene_id: PFL_0526
symbol: PFL_0526
gene_biotype: protein_coding
description:
  O-antigen polymerase family protein/toluene tolerance protein; Identified by similarity to GB:AAD17955.1; match to protein family HMM PF04932.


ensembl_gene_id: PFL_0527
symbol: msbA
gene_biotype: protein_coding
description:
  Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: PFL_0530
symbol: hldE
gene_biotype: protein_coding
description:
  Bifunctional protein HldE; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.


ensembl_gene_id: PFL_0533
symbol: PFL_0533
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.


ensembl_gene_id: PFL_0534
symbol: PFL_0534
gene_biotype: protein_coding
description:
  Multidrug resistance protein, SMR family; Identified by similarity to SP:Q57225; match to protein family HMM PF00893.


ensembl_gene_id: PFL_0536
symbol: waaA
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: PFL_0538
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: PFL_0539
symbol: cytX
gene_biotype: protein_coding
description:
  Putative hydroxymethylpyrimidine transporter CytX; Identified by match to protein family HMM PF02133; match to protein family HMM TIGR02358.


ensembl_gene_id: PFL_0541
symbol: nudF
gene_biotype: protein_coding
description:
  ADP-ribose pyrophosphatase; Identified by similarity to SP:P36651; similarity to SP:P83843; match to protein family HMM PF00293; match to protein family HMM TIGR00052.


ensembl_gene_id: PFL_0543
symbol: icc
gene_biotype: protein_coding
description:
  3',5'-cyclic-nucleotide phosphodiesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: PFL_0545
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: PFL_0547
symbol: PFL_0547
gene_biotype: protein_coding
description:
  Clan AA aspartic protease; Identified by match to protein family HMM PF00077; match to protein family HMM TIGR02281.


ensembl_gene_id: PFL_0548
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: PFL_0551
symbol: serB
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM PF06888; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488.


ensembl_gene_id: PFL_0552
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: PFL_0553
symbol: rhdA
gene_biotype: protein_coding
description:
  Thiosulfate sulfurtransferase; Identified by similarity to SP:P52197; match to protein family HMM PF00581.


ensembl_gene_id: PFL_0555
symbol: motA
gene_biotype: protein_coding
description:
  Chemotaxis protein MotA; Identified by similarity to SP:P09348; match to protein family HMM TIGR03818.


ensembl_gene_id: PFL_0556
symbol: motB
gene_biotype: protein_coding
description:
  Chemotaxis protein MotB; Identified by similarity to SP:P0AF06; match to protein family HMM PF00691.


ensembl_gene_id: PFL_0557
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: PFL_0558
symbol: orn
gene_biotype: protein_coding
description:
  Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: PFL_0560
symbol: queG
gene_biotype: protein_coding
description:
  Putative iron-sulfur cluster-binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: PFL_0561
symbol: nnrD
gene_biotype: protein_coding
description:
  YjeF family protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.


ensembl_gene_id: PFL_0562
symbol: PFL_0562
gene_biotype: protein_coding
description:
  ATPase, YjeE family; Identified by similarity to SP:P0AF69; match to protein family HMM PF02367; match to protein family HMM TIGR00150.


ensembl_gene_id: PFL_0563
symbol: PFL_0563
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520.


ensembl_gene_id: PFL_0564
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: PFL_0565
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: PFL_0566
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: PFL_0567
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: PFL_0570
symbol: hisZ
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase, regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.


ensembl_gene_id: PFL_0571
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: PFL_0573
symbol: fbpB
gene_biotype: protein_coding
description:
  Iron ABC transporter, permease protein; Identified by similarity to SP:P71338; match to protein family HMM PF00528.


ensembl_gene_id: PFL_0574
symbol: fbpA
gene_biotype: protein_coding
description:
  Iron ABC transporter, periplasmic iron-binding protein; Identified by similarity to SP:P35755; match to protein family HMM PF01547.


ensembl_gene_id: PFL_0577
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: PFL_0578
symbol: rlmB
gene_biotype: protein_coding
description:
  23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.


ensembl_gene_id: PFL_0580
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: PFL_0583
symbol: dnaB_2
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: PFL_0584
symbol: PFL_0584
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.


ensembl_gene_id: PFL_0588
symbol: PFL_0588
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.


ensembl_gene_id: PFL_0591
symbol: PFL_0591
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.


ensembl_gene_id: PFL_0593
symbol: nadE_2
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: PFL_0594
symbol: pncB_2
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.


ensembl_gene_id: PFL_0595
symbol: PFL_0595
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to GB:BAC65316.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0596
symbol: pcd
gene_biotype: protein_coding
description:
  Piperideine-6-carboxylate dehydrogenase; Identified by similarity to GB:BAB19801.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_0598
symbol: livJ
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system substrate-binding protein; Identified by similarity to SP:P0AD96; match to protein family HMM PF01094.


ensembl_gene_id: PFL_0599
symbol: livH
gene_biotype: protein_coding
description:
  High-affinity branched-chain amino acid ABC transporter, permease protein LivH; Identified by similarity to SP:P0AEX7; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_0600
symbol: livM
gene_biotype: protein_coding
description:
  High-affinity branched-chain amino acid ABC transporter, permease protein LivM; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_0601
symbol: livG
gene_biotype: protein_coding
description:
  High affinity branched-chain amino acid ABC transporter, ATP-binding protein LivG; Identified by similarity to SP:P0A9S7; match to protein family HMM PF00005.


ensembl_gene_id: PFL_0602
symbol: livF
gene_biotype: protein_coding
description:
  High affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF; Identified by similarity to SP:P22731; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_0603
symbol: PFL_0603
gene_biotype: protein_coding
description:
  Serine 3-dehydrogenase; Identified by similarity to SP:Q9KWN1; match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_0604
symbol: PFL_0604
gene_biotype: protein_coding
description:
  Cation diffusion facilitator family transporter; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.


ensembl_gene_id: PFL_0607
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: PFL_0608
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: PFL_0609
symbol: ureE
gene_biotype: protein_coding
description:
  Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.


ensembl_gene_id: PFL_0610
symbol: desT
gene_biotype: protein_coding
description:
  Unsaturated fatty acid biosynthesis transcriptional regulator DesT; See Subramanian et. al. 2009 (PMID: 19880602) for more information; identified by similarity to GB:AAG08275.1; match to protein family HMM PF00440.


ensembl_gene_id: PFL_0614
symbol: PFL_0614
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P24734; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0615
symbol: azoR1
gene_biotype: protein_coding
description:
  Flavin reductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: PFL_0616
symbol: sugE_2
gene_biotype: protein_coding
description:
  Quaternary ammonium compound-resistance protein SugE; Identified by similarity to SP:P69937; match to protein family HMM PF00893.


ensembl_gene_id: PFL_0619
symbol: PFL_0619
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.


ensembl_gene_id: PFL_0620
symbol: PFL_0620
gene_biotype: protein_coding
description:
  Phosphate starvation-inducible protein PsiF; Identified by similarity to SP:P0AFM4; match to protein family HMM PF07769.


ensembl_gene_id: PFL_0621
symbol: PFL_0621
gene_biotype: protein_coding
description:
  Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479.


ensembl_gene_id: PFL_0622
symbol: PFL_0622
gene_biotype: protein_coding
description:
  Adhesin/hemagglutinin, HecA family; Identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901.


ensembl_gene_id: PFL_0628
symbol: cbpA
gene_biotype: protein_coding
description:
  Curved DNA-binding protein; Identified by similarity to SP:P36659; match to protein family HMM PF00226; match to protein family HMM PF01556.


ensembl_gene_id: PFL_0631
symbol: ureC
gene_biotype: protein_coding
description:
  Urease, alpha subunit; Identified by similarity to SP:P18314; match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.


ensembl_gene_id: PFL_0632
symbol: ureB
gene_biotype: protein_coding
description:
  Urease, beta subunit; Identified by similarity to SP:P18315; match to protein family HMM PF00699; match to protein family HMM TIGR00192; Belongs to the urease beta subunit family.


ensembl_gene_id: PFL_0633
symbol: ttr
gene_biotype: protein_coding
description:
  Acetyltransferase, tabtoxin resistance protein; Identified by similarity to SP:P16966; match to protein family HMM PF00583.


ensembl_gene_id: PFL_0635
symbol: ureA
gene_biotype: protein_coding
description:
  Urease, gamma subunit; Identified by similarity to SP:P73796; match to protein family HMM PF00547; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family.


ensembl_gene_id: PFL_0636
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: PFL_0637
symbol: urtE
gene_biotype: protein_coding
description:
  Urea ABC transporter, ATP-binding protein UrtE; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03410.


ensembl_gene_id: PFL_0638
symbol: urtD
gene_biotype: protein_coding
description:
  Urea ABC transporter, ATP-binding protein UrtD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03411.


ensembl_gene_id: PFL_0639
symbol: urtC
gene_biotype: protein_coding
description:
  Urea ABC transporter, permease protein UrtC; Identified by match to protein family HMM PF02653; match to protein family HMM TIGR03408; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_0640
symbol: urtB
gene_biotype: protein_coding
description:
  Urea ABC transporter, permease protein UrtB; Identified by match to protein family HMM PF02653; match to protein family HMM TIGR03409; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_0641
symbol: urtA
gene_biotype: protein_coding
description:
  Urea ABC transporter, periplasmic urea-binding protein; Identified by match to protein family HMM TIGR03407.


ensembl_gene_id: PFL_0643
symbol: PFL_0643
gene_biotype: protein_coding
description:
  Iron-chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: PFL_0644
symbol: PFL_0644
gene_biotype: protein_coding
description:
  Iron-chelate ABC transporter, FeCT family, periplasmic iron-chelate-binding protein; Identified by match to protein family HMM PF01497.


ensembl_gene_id: PFL_0645
symbol: PFL_0645
gene_biotype: protein_coding
description:
  Iron-chelate ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: PFL_0647
symbol: PFL_0647
gene_biotype: protein_coding
description:
  PepSY-associated membrane protein; Identified by match to protein family HMM PF03413; match to protein family HMM PF03929.


ensembl_gene_id: PFL_0648
symbol: oprC
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane copper receptor OprC; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778.


ensembl_gene_id: PFL_0653
symbol: PFL_0653
gene_biotype: protein_coding
description:
  Putative addiction module killer protein; Identified by match to protein family HMM PF05973; match to protein family HMM TIGR02683.


ensembl_gene_id: PFL_0655
symbol: cbiD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.


ensembl_gene_id: PFL_0656
symbol: cobL
gene_biotype: protein_coding
description:
  Precorrin-6y C5,15-methyltransferase; Identified by similarity to SP:P21921; match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.


ensembl_gene_id: PFL_0658
symbol: cobH
gene_biotype: protein_coding
description:
  precorrin-8X methylmutase; Identified by similarity to SP:P21638; match to protein family HMM PF02570.


ensembl_gene_id: PFL_0659
symbol: cobI
gene_biotype: protein_coding
description:
  Precorrin-2 C(20)-methyltransferase; Methylates precorrin-2 at the C-20 position to produce precorrin-3A.


ensembl_gene_id: PFL_0660
symbol: cobJ
gene_biotype: protein_coding
description:
  CbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.


ensembl_gene_id: PFL_0663
symbol: PFL_0663
gene_biotype: protein_coding
description:
  Membrane protein, MarC family; Identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427.


ensembl_gene_id: PFL_0664
symbol: retS
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator RetS; Identified by similarity to GB:AAG08241.1; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07695; match to protein family HMM PF07696.


ensembl_gene_id: PFL_0665
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; Identified by similarity to SP:P15640; match to protein family HMM PF01071; match to protein family HMM PF02655; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family.


ensembl_gene_id: PFL_0666
symbol: purH
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Identified by similarity to SP:P15639; match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355.


ensembl_gene_id: PFL_0667
symbol: fis
gene_biotype: protein_coding
description:
  DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.


ensembl_gene_id: PFL_0668
symbol: dusB
gene_biotype: protein_coding
description:
  tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.


ensembl_gene_id: PFL_0670
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: PFL_0671
symbol: accC_2
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: PFL_0672
symbol: accB
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: PFL_0673
symbol: aroQ_2
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: PFL_0675
symbol: PFL_0675
gene_biotype: protein_coding
description:
  Response regulator/GGDEF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_0678
symbol: yciH
gene_biotype: protein_coding
description:
  Putative translation initiation factor SUI1; Identified by match to protein family HMM PF01253; match to protein family HMM TIGR01158.


ensembl_gene_id: PFL_0683
symbol: smtA
gene_biotype: protein_coding
description:
  SmtA protein; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.


ensembl_gene_id: PFL_0687
symbol: PFL_0687
gene_biotype: protein_coding
description:
  Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_0690
symbol: PFL_0690
gene_biotype: protein_coding
description:
  DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.


ensembl_gene_id: PFL_0693
symbol: PFL_0693
gene_biotype: protein_coding
description:
  Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.


ensembl_gene_id: PFL_0697
symbol: PFL_0697
gene_biotype: protein_coding
description:
  Type II and III secretion system protein; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.


ensembl_gene_id: PFL_0698
symbol: cpaB
gene_biotype: protein_coding
description:
  Flp pilus assembly protein CpaB; Identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177.


ensembl_gene_id: PFL_0700
symbol: PFL_0700
gene_biotype: protein_coding
description:
  Putative response regulator recevier domain protein; Identified by match to protein family HMM PF00072.


ensembl_gene_id: PFL_0705
symbol: PFL_0705
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.


ensembl_gene_id: PFL_0706
symbol: PFL_0706
gene_biotype: protein_coding
description:
  Putative acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PFL_0707
symbol: PFL_0707
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743.


ensembl_gene_id: PFL_0709
symbol: cueR
gene_biotype: protein_coding
description:
  Cu(I)-responsive transcriptional regulator; Identified by similarity to SP:P0A9G4; match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02044.


ensembl_gene_id: PFL_0710
symbol: PFL_0710
gene_biotype: protein_coding
description:
  Copper-exporting ATPase; Identified by similarity to SP:P73241; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.


ensembl_gene_id: PFL_0712
symbol: PFL_0712
gene_biotype: protein_coding
description:
  Putative copper chaperone CopZ; Identified by similarity to SP:O32221; match to protein family HMM PF00403.


ensembl_gene_id: PFL_0713
symbol: PFL_0713
gene_biotype: protein_coding
description:
  Drug resistance transporter, Bcr/CflA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710.


ensembl_gene_id: PFL_0715
symbol: PFL_0715
gene_biotype: protein_coding
description:
  Zinc-binding alcohol dehydrogenase family protein; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02817; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.


ensembl_gene_id: PFL_0716
symbol: PFL_0716
gene_biotype: protein_coding
description:
  Antibiotic biosynthesis monooxygenase domain protein; Identified by match to protein family HMM PF03992.


ensembl_gene_id: PFL_0718
symbol: PFL_0718
gene_biotype: protein_coding
description:
  MFS transporter, aromatic acid:H+ symporter (AAHS) family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.


ensembl_gene_id: PFL_0719
symbol: add
gene_biotype: protein_coding
description:
  Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.


ensembl_gene_id: PFL_0720
symbol: PFL_0720
gene_biotype: protein_coding
description:
  Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.


ensembl_gene_id: PFL_0723
symbol: PFL_0723
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAO07135.1; match to protein family HMM PF03781.


ensembl_gene_id: PFL_0725
symbol: PFL_0725
gene_biotype: protein_coding
description:
  Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.


ensembl_gene_id: PFL_0726
symbol: PFL_0726
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_0729
symbol: PFL_0729
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF01205; match to protein family HMM PF09186.


ensembl_gene_id: PFL_0730
symbol: PFL_0730
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; Identified by similarity to SP:P0ACU2; match to protein family HMM PF00440; match to protein family HMM PF08362.


ensembl_gene_id: PFL_0731
symbol: yicE
gene_biotype: protein_coding
description:
  High-affinity xanthine transporter, NCS2 family, YicE; See PMID: 16096267 for more information; identified by similarity to SP:P0AGM9; match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173.


ensembl_gene_id: PFL_0733
symbol: PFL_0733
gene_biotype: protein_coding
description:
  Beta-alanine--pyruvate transaminase; Identified by similarity to SP:P28269; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PFL_0734
symbol: mmsA_1
gene_biotype: protein_coding
description:
  Methylmalonate-semialdehyde dehydrogenase (acylating); Identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722.


ensembl_gene_id: PFL_0740
symbol: recC
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...]


ensembl_gene_id: PFL_0741
symbol: recB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...]


ensembl_gene_id: PFL_0742
symbol: recD
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...]


ensembl_gene_id: PFL_0744
symbol: PFL_0744
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein, YfiN family; Identified by similarity to SP:P46139; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_0747
symbol: mmsA_2
gene_biotype: protein_coding
description:
  Methylmalonate-semialdehyde dehydrogenase (acylating); Identified by similarity to SP:P28810; match to protein family HMM PF00171; match to protein family HMM TIGR01722.


ensembl_gene_id: PFL_0748
symbol: mmsB
gene_biotype: protein_coding
description:
  3-hydroxyisobutyrate dehydrogenase; Identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM TIGR01692; Belongs to the HIBADH-related family.


ensembl_gene_id: PFL_0750
symbol: PFL_0750
gene_biotype: protein_coding
description:
  Toxin-antitoxin system antitoxin component, TIGR02293 family; Identified by match to protein family HMM PF09722; match to protein family HMM TIGR02293.


ensembl_gene_id: PFL_0752
symbol: kynB
gene_biotype: protein_coding
description:
  Arylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.


ensembl_gene_id: PFL_0753
symbol: kynA
gene_biotype: protein_coding
description:
  Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.


ensembl_gene_id: PFL_0754
symbol: PFL_0754
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family/aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.


ensembl_gene_id: PFL_0755
symbol: PFL_0755
gene_biotype: protein_coding
description:
  Identified by similarity to SP:P07775; match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843.


ensembl_gene_id: PFL_0756
symbol: aroP_2
gene_biotype: protein_coding
description:
  Aromatic amino acid transport protein AroP; Identified by similarity to SP:P15993; match to protein family HMM PF00324.


ensembl_gene_id: PFL_0757
symbol: antC
gene_biotype: protein_coding
description:
  Anthranilate dioxygenase reductase; Identified by similarity to GB:AAC34815.1; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.


ensembl_gene_id: PFL_0758
symbol: antB
gene_biotype: protein_coding
description:
  Anthranilate 1,2-dioxygenase, small subunit; Identified by similarity to GB:AAC34814.1; match to protein family HMM PF00866; match to protein family HMM TIGR03231.


ensembl_gene_id: PFL_0759
symbol: antA
gene_biotype: protein_coding
description:
  Anthranilate 1,2-dioxygenase, large subunit; Identified by similarity to GB:AAC34813.1; match to protein family HMM PF00355; match to protein family HMM PF00848; match to protein family HMM TIGR03228.


ensembl_gene_id: PFL_0761
symbol: PFL_0761
gene_biotype: protein_coding
description:
  Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM PF08279.


ensembl_gene_id: PFL_0762
symbol: kynU
gene_biotype: protein_coding
description:
  Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: PFL_0764
symbol: PFL_0764
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376; match to protein family HMM PF09278.


ensembl_gene_id: PFL_0765
symbol: PFL_0765
gene_biotype: protein_coding
description:
  NAD(P)H dehydrogenase, quinone family; Identified by similarity to SP:P45245; match to protein family HMM PF02525; match to protein family HMM PF03358.


ensembl_gene_id: PFL_0769
symbol: mdaB
gene_biotype: protein_coding
description:
  NAD(P)H dehydrogenase, quinone family; Identified by similarity to PIR:F64598; match to protein family HMM PF02525.


ensembl_gene_id: PFL_0771
symbol: ggt_2
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; Identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066.


ensembl_gene_id: PFL_0772
symbol: PFL_0772
gene_biotype: protein_coding
description:
  Inorganic anion transporter, SulP family; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.


ensembl_gene_id: PFL_0773
symbol: PFL_0773
gene_biotype: protein_coding
description:
  Transporter, gluconate:H+ symporter family; Identified by similarity to SP:P12012; match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791.


ensembl_gene_id: PFL_0774
symbol: PFL_0774
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family/SIS domain protein; Identified by similarity to SP:P46118; match to protein family HMM PF01380; match to protein family HMM PF01418.


ensembl_gene_id: PFL_0775
symbol: PFL_0775
gene_biotype: protein_coding
description:
  N-acyl-D-aspartate deacylase; Identified by similarity to SP:P94212; match to protein family HMM PF07908; match to protein family HMM PF07969.


ensembl_gene_id: PFL_0778
symbol: PFL_0778
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.


ensembl_gene_id: PFL_0786
symbol: PFL_0786
gene_biotype: protein_coding
description:
  Dolichyl-phosphate-mannose-protein mannosyltransferase; Identified by match to protein family HMM PF02366.


ensembl_gene_id: PFL_0787
symbol: PFL_0787
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; Identified by similarity to SP:P37486; match to protein family HMM PF01638.


ensembl_gene_id: PFL_0788
symbol: PFL_0788
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF08240; match to protein family HMM TIGR02817; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.


ensembl_gene_id: PFL_0793
symbol: eamA
gene_biotype: protein_coding
description:
  O-acetylserine/cysteine export protein EamA; Identified by similarity to SP:P31125; match to protein family HMM PF00892.


ensembl_gene_id: PFL_0799
symbol: PFL_0799
gene_biotype: protein_coding
description:
  Transporter, BCCT family; Identified by match to protein family HMM PF02028; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: PFL_0804
symbol: PFL_0804
gene_biotype: protein_coding
description:
  Putative endoribonuclease L-PSP; Identified by similarity to SP:P37552; match to protein family HMM PF01042.


ensembl_gene_id: PFL_0813
symbol: PFL_0813
gene_biotype: protein_coding
description:
  FAD binding domain/FAD linked oxidase domain/4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913.


ensembl_gene_id: PFL_0815
symbol: PFL_0815
gene_biotype: protein_coding
description:
  Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02589; match to protein family HMM TIGR00273.


ensembl_gene_id: PFL_0817
symbol: glcA
gene_biotype: protein_coding
description:
  Glycolate permease GlcA; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: PFL_0818
symbol: pdhR
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex repressor; Identified by similarity to SP:P0ACL9; match to protein family HMM PF00392; match to protein family HMM PF07729.


ensembl_gene_id: PFL_0819
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: PFL_0820
symbol: PFL_0820
gene_biotype: protein_coding
description:
  Sodium dependent symporter, SNF family; Identified by match to protein family HMM PF00209; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.


ensembl_gene_id: PFL_0822
symbol: rnfH
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF03658; Belongs to the UPF0125 (RnfH) family.


ensembl_gene_id: PFL_0823
symbol: omlA
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: PFL_0824
symbol: fur
gene_biotype: protein_coding
description:
  Ferric uptake regulation protein; Identified by similarity to SP:Q03456; match to protein family HMM PF01475; Belongs to the Fur family.


ensembl_gene_id: PFL_0826
symbol: grpE
gene_biotype: protein_coding
description:
  Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...]


ensembl_gene_id: PFL_0828
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: PFL_0829
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.


ensembl_gene_id: PFL_0830
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, small subunit; Identified by similarity to SP:P00907; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; Belongs to the CarA family.


ensembl_gene_id: PFL_0831
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P00968; match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; Belongs to the CarB family.


ensembl_gene_id: PFL_0832
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: PFL_0834
symbol: PFL_0834
gene_biotype: protein_coding
description:
  RNA-binding protein, YhbY family; Identified by similarity to SP:P0AGK4; match to protein family HMM PF01985.


ensembl_gene_id: PFL_0835
symbol: rrmJ
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: PFL_0836
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: PFL_0837
symbol: folP
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: PFL_0838
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: PFL_0839
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: PFL_0843
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: PFL_0844
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: PFL_0845
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: PFL_0846
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: PFL_0847
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.


ensembl_gene_id: PFL_0848
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: PFL_0851
symbol: nadC
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide diphosphorylase; Identified by similarity to SP:P30819; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; Belongs to the NadC/ModD family.


ensembl_gene_id: PFL_0853
symbol: ampD
gene_biotype: protein_coding
description:
  N-acetyl-anhydromuramyl-L-alanine amidase AmpD; Identified by similarity to GB:AAC98783.1; match to protein family HMM PF01510.


ensembl_gene_id: PFL_0857
symbol: PFL_0857
gene_biotype: protein_coding
description:
  Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.


ensembl_gene_id: PFL_0858
symbol: fruR
gene_biotype: protein_coding
description:
  DNA-binding transcriptional regulator FruR; Identified by similarity to SP:P21168; match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR02417.


ensembl_gene_id: PFL_0859
symbol: fruB
gene_biotype: protein_coding
description:
  Putative multiphosphoryl transfer protein FruB; Identified by similarity to SP:P45597; match to protein family HMM PF00359; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PFL_0860
symbol: fruK
gene_biotype: protein_coding
description:
  1-phosphofructokinase; Identified by similarity to SP:P0AEW9; match to protein family HMM PF00294; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: PFL_0861
symbol: fruA
gene_biotype: protein_coding
description:
  PTS system, fructose-specific IIBC component; Identified by similarity to SP:P20966; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427.


ensembl_gene_id: PFL_0863
symbol: PFL_0863
gene_biotype: protein_coding
description:
  Flavodoxin/oxidoreductase NAD binding domain protein; Identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF03929.


ensembl_gene_id: PFL_0867
symbol: speC
gene_biotype: protein_coding
description:
  Ornithine decarboxylase; Identified by similarity to GB:AAG07907.1; match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: PFL_0868
symbol: opuCA
gene_biotype: protein_coding
description:
  Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein; Identified by similarity to SP:O34992; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.


ensembl_gene_id: PFL_0869
symbol: opuCB
gene_biotype: protein_coding
description:
  Glycine betaine/carnitine/choline ABC transporter, permease protein; Identified by similarity to SP:O34878; match to protein family HMM PF00528.


ensembl_gene_id: PFL_0870
symbol: opuCC
gene_biotype: protein_coding
description:
  Osmoprotectant transport system substrate-binding protein; Identified by similarity to SP:O32243; match to protein family HMM PF04069.


ensembl_gene_id: PFL_0872
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: PFL_0874
symbol: dppF
gene_biotype: protein_coding
description:
  Dipeptide ABC transporter, ATP-binding protein DppF; Identified by similarity to SP:P37313; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_0875
symbol: dppD
gene_biotype: protein_coding
description:
  Dipeptide ABC transporter, ATP-binding protein DppD; Identified by similarity to SP:P0AAG0; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_0876
symbol: dppC
gene_biotype: protein_coding
description:
  Dipeptide ABC transporter, permease protein DppC; Identified by similarity to SP:P0AEG1; match to protein family HMM PF00528.


ensembl_gene_id: PFL_0877
symbol: dppB
gene_biotype: protein_coding
description:
  Dipeptide ABC transporter, permease protein DppB; Identified by similarity to SP:P0AEF8; match to protein family HMM PF00528.


ensembl_gene_id: PFL_0878
symbol: dppA1
gene_biotype: protein_coding
description:
  Dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 1; Identified by similarity to SP:P23847; match to protein family HMM PF00496.


ensembl_gene_id: PFL_0879
symbol: PFL_0879
gene_biotype: protein_coding
description:
  Outer membrane porin, OprD family; Identified by similarity to SP:P32722; match to protein family HMM PF03573.


ensembl_gene_id: PFL_0880
symbol: dppA2
gene_biotype: protein_coding
description:
  Dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 2; Identified by similarity to SP:P23847; match to protein family HMM PF00496.


ensembl_gene_id: PFL_0881
symbol: dppA3
gene_biotype: protein_coding
description:
  Dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 3; Identified by similarity to SP:P23847; match to protein family HMM PF00496.


ensembl_gene_id: PFL_0884
symbol: PFL_0884
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by similarity to GB:BAA31475.1; match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: PFL_0885
symbol: PFL_0885
gene_biotype: protein_coding
description:
  DNA-binding response regulator, Fis family; Identified by similarity to SP:P42508; match to protein family HMM PF00072; match to protein family HMM PF02954.


ensembl_gene_id: PFL_0886
symbol: PFL_0886
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF05992; match to protein family HMM PF06472.


ensembl_gene_id: PFL_0888
symbol: PFL_0888
gene_biotype: protein_coding
description:
  Putative phosphatidylcholine-hydrolyzing phospholipase C; Identified by similarity to GB:CAC18568.1.


ensembl_gene_id: PFL_0890
symbol: PFL_0890
gene_biotype: protein_coding
description:
  Putative 4-carboxymuconolactone decarboxylase; Identified by similarity to SP:P20370; match to protein family HMM PF02627.


ensembl_gene_id: PFL_0891
symbol: PFL_0891
gene_biotype: protein_coding
description:
  K+-dependent Na+/Ca+ exchanger-like protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367.


ensembl_gene_id: PFL_0892
symbol: rlpA
gene_biotype: protein_coding
description:
  Lipoprotein, RplA family; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: PFL_0893
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: PFL_0894
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: PFL_0895
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: PFL_0896
symbol: mreB
gene_biotype: protein_coding
description:
  Rod shape-determining protein MreB; Identified by similarity to SP:P0A9X4; match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904.


ensembl_gene_id: PFL_0897
symbol: mreC
gene_biotype: protein_coding
description:
  Rod shape-determining protein MreC; Identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219.


ensembl_gene_id: PFL_0898
symbol: mreD
gene_biotype: protein_coding
description:
  Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.


ensembl_gene_id: PFL_0899
symbol: maf_1
gene_biotype: protein_coding
description:
  Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: PFL_0900
symbol: rng
gene_biotype: protein_coding
description:
  Ribonuclease G; Identified by similarity to SP:P0A9J0; match to protein family HMM PF00575; match to protein family HMM TIGR00757.


ensembl_gene_id: PFL_0904
symbol: PFL_0904
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF04751; Belongs to the UPF0307 family.


ensembl_gene_id: PFL_0906
symbol: fagA
gene_biotype: protein_coding
description:
  FagA protein; See Hassett et al. 1997 (PMID: 9045799) for more information; identified by similarity to GB:AAG07859.1.


ensembl_gene_id: PFL_0907
symbol: fumC_1
gene_biotype: protein_coding
description:
  Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: PFL_0909
symbol: sodA1
gene_biotype: protein_coding
description:
  Superoxide dismutase, Mn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: PFL_0910
symbol: PFL_0910
gene_biotype: protein_coding
description:
  Metal cation transporter, zinc(II)-iron(II) permease (ZIP) family; Identified by match to protein family HMM PF02535.


ensembl_gene_id: PFL_0911
symbol: ptsH
gene_biotype: protein_coding
description:
  Phosphocarrier protein HPr; Identified by similarity to SP:P23537; match to protein family HMM PF00381; match to protein family HMM TIGR01003.


ensembl_gene_id: PFL_0913
symbol: ptsN
gene_biotype: protein_coding
description:
  PTS IIA-like nitrogen-regulatory protein PtsN; Identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419.


ensembl_gene_id: PFL_0914
symbol: yhbH
gene_biotype: protein_coding
description:
  Putative sigma(54) modulation protein; Identified by similarity to SP:P0AFX0; match to protein family HMM PF02482; match to protein family HMM TIGR00741.


ensembl_gene_id: PFL_0915
symbol: rpoN
gene_biotype: protein_coding
description:
  RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: PFL_0916
symbol: lptB
gene_biotype: protein_coding
description:
  Lipopolysaccharide ABC transporter, ATP-binding protein LptB; Identified by similarity to SP:P0A9V1; match to protein family HMM PF00005.


ensembl_gene_id: PFL_0917
symbol: lptA
gene_biotype: protein_coding
description:
  Lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-binding protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.


ensembl_gene_id: PFL_0918
symbol: lptC
gene_biotype: protein_coding
description:
  Putative lipopolysaccharide ABC transporter, permease protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.


ensembl_gene_id: PFL_0919
symbol: kdsC
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.


ensembl_gene_id: PFL_0920
symbol: kdsD
gene_biotype: protein_coding
description:
  Arabinose 5-phosphate isomerase; Identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393.


ensembl_gene_id: PFL_0921
symbol: ttg2A
gene_biotype: protein_coding
description:
  Toluene tolerance ABC efflux transporter, ATP-binding protein; Identified by similarity to GB:AAD17957.1; match to protein family HMM PF00005.


ensembl_gene_id: PFL_0922
symbol: ttg2B
gene_biotype: protein_coding
description:
  Toluene tolerance protein Ttg2B; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.


ensembl_gene_id: PFL_0923
symbol: ttg2C
gene_biotype: protein_coding
description:
  Toluene tolerance protein Ttg2C; Identified by similarity to GB:AAD17959.1; match to protein family HMM PF02470.


ensembl_gene_id: PFL_0924
symbol: ttg2D
gene_biotype: protein_coding
description:
  Toluene tolerance protein Ttg2D; Identified by similarity to GB:AAD17960.1; match to protein family HMM PF05494.


ensembl_gene_id: PFL_0926
symbol: ttg2F
gene_biotype: protein_coding
description:
  Toluene tolerance protein Ttg2F; Identified by match to protein family HMM PF01722; Belongs to the BolA/IbaG family.


ensembl_gene_id: PFL_0927
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: PFL_0928
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: PFL_0929
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: PFL_0930
symbol: hisC_1
gene_biotype: protein_coding
description:
  Histidinol-phosphate transaminase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: PFL_0933
symbol: algW
gene_biotype: protein_coding
description:
  Serine protease AlgW; Identified by similarity to GB:AAC43718.1; match to protein family HMM PF00089; match to protein family HMM PF00595.


ensembl_gene_id: PFL_0934
symbol: PFL_0934
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.


ensembl_gene_id: PFL_0935
symbol: cysD-2
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, small subunit; Identified by similarity to SP:P21156; match to protein family HMM PF01507; match to protein family HMM TIGR02039.


ensembl_gene_id: PFL_0936
symbol: cysN
gene_biotype: protein_coding
description:
  Putative sulfate adenylyltransferase, large subunit/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: PFL_0938
symbol: pta
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.


ensembl_gene_id: PFL_0940
symbol: slyD
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, FKBP-type SlyD; Identified by similarity to SP:P0A9K9; match to protein family HMM PF00254.


ensembl_gene_id: PFL_0941
symbol: PFL_0941
gene_biotype: protein_coding
description:
  Glutathione peroxidase, BtuE family; See Arenas et. al. 2010 (PMID: 20621065) for characterization of the glutathione peroxidase activity of btuE in E. coli; identified by similarity to SP:P06610; match to protein family HMM PF00255.


ensembl_gene_id: PFL_0944
symbol: cysZ
gene_biotype: protein_coding
description:
  CysZ family protein; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family.


ensembl_gene_id: PFL_0945
symbol: trxB_1
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.


ensembl_gene_id: PFL_0948
symbol: folB_1
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526.


ensembl_gene_id: PFL_0949
symbol: folE1
gene_biotype: protein_coding
description:
  GTP cyclohydrolase I; Identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063.


ensembl_gene_id: PFL_0952
symbol: PFL_0952
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; Identified by similarity to PIR:S68198; match to protein family HMM PF00376.


ensembl_gene_id: PFL_0954
symbol: PFL_0954
gene_biotype: protein_coding
description:
  Sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_0956
symbol: PFL_0956
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P27111; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_0959
symbol: PFL_0959
gene_biotype: protein_coding
description:
  Class II aldolase and adducin N-terminal domain protein; Identified by match to protein family HMM PF00596.


ensembl_gene_id: PFL_0961
symbol: PFL_0961
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_0965
symbol: PFL_0965
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; Identified by similarity to GB:AAC44880.1; match to protein family HMM PF00196; match to protein family HMM PF07721.


ensembl_gene_id: PFL_0967
symbol: hmgA
gene_biotype: protein_coding
description:
  Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.


ensembl_gene_id: PFL_0968
symbol: fahA
gene_biotype: protein_coding
description:
  Fumarylacetoacetase; Identified by similarity to SP:P25093; match to protein family HMM PF01557; match to protein family HMM PF09298; match to protein family HMM TIGR01266.


ensembl_gene_id: PFL_0969
symbol: maiA
gene_biotype: protein_coding
description:
  Maleylacetoacetate isomerase; Identified by similarity to SP:O43708; match to protein family HMM PF02798; match to protein family HMM TIGR01262.


ensembl_gene_id: PFL_0973
symbol: ldh
gene_biotype: protein_coding
description:
  Leucine dehydrogenase; Identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812.


ensembl_gene_id: PFL_0979
symbol: sdaB
gene_biotype: protein_coding
description:
  L-serine ammonia-lyase 2; Identified by similarity to SP:P42630; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: PFL_0982
symbol: fecA
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferric citrate receptor FecA; Transducer; identified by similarity to SP:P13036; match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_0983
symbol: fecR
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein FecR; Identified by similarity to SP:P23485; similarity to PIR:S46356; match to protein family HMM PF04773.


ensembl_gene_id: PFL_0984
symbol: fecI
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor FecI; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_0989
symbol: PFL_0989
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to PIR:S46356; match to protein family HMM PF04773.


ensembl_gene_id: PFL_0994
symbol: PFL_0994
gene_biotype: protein_coding
description:
  Ser/Thr protein phosphatase/5'-nucleotidase domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: PFL_0995
symbol: PFL_0995
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane receptor; Transducer; identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_0997
symbol: PFL_0997
gene_biotype: protein_coding
description:
  Putative acid phosphatase; Identified by similarity to SP:P28581; match to protein family HMM PF01569.


ensembl_gene_id: PFL_1001
symbol: ghrB2
gene_biotype: protein_coding
description:
  Glyoxylate/hydroxypyruvate reductase B; Identified by similarity to SP:P37666; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: PFL_1003
symbol: fusA
gene_biotype: protein_coding
description:
  Fusaric acid resistance protein FusA; Identified by similarity to SP:P24126; match to protein family HMM PF02321; match to protein family HMM TIGR01845.


ensembl_gene_id: PFL_1004
symbol: fusBCD
gene_biotype: protein_coding
description:
  Fusaric acid resistance protein FusBCD; Identified by similarity to SP:P24128; match to protein family HMM PF04632.


ensembl_gene_id: PFL_1006
symbol: fusE
gene_biotype: protein_coding
description:
  Fusaric acid resistance protein FusE; Identified by similarity to SP:P24130; match to protein family HMM PF00529; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_1008
symbol: PFL_1008
gene_biotype: protein_coding
description:
  Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_1011
symbol: fic
gene_biotype: protein_coding
description:
  Cell filamentation protein Fic; Identified by similarity to SP:P20605; match to protein family HMM PF02661.


ensembl_gene_id: PFL_1013
symbol: algA
gene_biotype: protein_coding
description:
  Alginate biosynthesis protein AlgA; Identified by similarity to SP:P07874; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.


ensembl_gene_id: PFL_1016
symbol: algI
gene_biotype: protein_coding
description:
  Alginate biosynthesis protein AlgI; Identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: PFL_1017
symbol: algL
gene_biotype: protein_coding
description:
  Alginate lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.


ensembl_gene_id: PFL_1021
symbol: algK
gene_biotype: protein_coding
description:
  Alginate biosynthesis protein AlgK; Identified by similarity to GB:AAC38141.1; match to protein family HMM PF08238.


ensembl_gene_id: PFL_1022
symbol: alg44
gene_biotype: protein_coding
description:
  Alginate biosynthesis protein Alg44; Identified by similarity to SP:Q9HY69; match to protein family HMM PF07238.


ensembl_gene_id: PFL_1024
symbol: algD
gene_biotype: protein_coding
description:
  GDP-mannose 6-dehydrogenase AlgD; Identified by similarity to SP:O07299; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: PFL_1025
symbol: PFL_1025
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family.


ensembl_gene_id: PFL_1028
symbol: PFL_1028
gene_biotype: protein_coding
description:
  RND transporter, HAE1 family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PFL_1031
symbol: PFL_1031
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P10183; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_1032
symbol: ribD_1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: PFL_1034
symbol: ribA-2
gene_biotype: protein_coding
description:
  Putative GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: PFL_1035
symbol: PFL_1035
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAB88915.1; match to protein family HMM PF03781.


ensembl_gene_id: PFL_1036
symbol: PFL_1036
gene_biotype: protein_coding
description:
  Methyltransferase, UbiE/COQ5 family; Identified by similarity to GB:BAA92862.2; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_1037
symbol: PFL_1037
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC77726.1; match to protein family HMM PF04657.


ensembl_gene_id: PFL_1038
symbol: moaC_1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: PFL_1039
symbol: moaD
gene_biotype: protein_coding
description:
  Putative molybdopterin converting factor, subunit 1; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01687.


ensembl_gene_id: PFL_1040
symbol: moaE_1
gene_biotype: protein_coding
description:
  Molybdopterin converting factor, subunit 2; Identified by similarity to SP:P30749; match to protein family HMM PF02391.


ensembl_gene_id: PFL_1041
symbol: PFL_1041
gene_biotype: protein_coding
description:
  Lysine-arginine-ornithine binding periplasmic protein; Identified by similarity to SP:P02911; match to protein family HMM PF00497; match to protein family HMM TIGR01096.


ensembl_gene_id: PFL_1048
symbol: aapJ
gene_biotype: protein_coding
description:
  General L-amino acid ABC transporter, periplasmic L-amino acid-binding protein AapJ; Identified by similarity to SP:Q52812.


ensembl_gene_id: PFL_1049
symbol: aapQ
gene_biotype: protein_coding
description:
  General L-amino acid ABC transporter, permease protein AapQ; Identified by similarity to SP:Q52813; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_1050
symbol: aapM
gene_biotype: protein_coding
description:
  General L-amino acid ABC transporter, permease protein AapM; Identified by similarity to SP:Q52814; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_1051
symbol: aapP
gene_biotype: protein_coding
description:
  General L-amino acid ABC transporter, ATP-binding protein AapP; Identified by similarity to SP:Q52815; match to protein family HMM PF00005.


ensembl_gene_id: PFL_1052
symbol: ygiT
gene_biotype: protein_coding
description:
  Transcriptional regulator YgiT; See Yamaguchi et al 2009 (PMID: 19690171) for more information about this gene in E. coli; identified by similarity to SP:Q46864.


ensembl_gene_id: PFL_1053
symbol: mqsR
gene_biotype: protein_coding
description:
  Motility quorum-sensing regulator MqsR; See Yamaguchi et al 2009 (PMID: 19690171) for more information about this gene in E. coli; identified by similarity to SP:Q46865.


ensembl_gene_id: PFL_1054
symbol: PFL_1054
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.


ensembl_gene_id: PFL_1055
symbol: PFL_1055
gene_biotype: protein_coding
description:
  Cyanate transporter, major facilitator family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00896.


ensembl_gene_id: PFL_1059
symbol: PFL_1059
gene_biotype: protein_coding
description:
  Glutaredoxin family protein; Identified by similarity to GB:CAA70763.1; match to protein family HMM PF00462.


ensembl_gene_id: PFL_1061
symbol: hupN
gene_biotype: protein_coding
description:
  DNA-binding protein HU, nu subunit; Identified by similarity to GB:AAK52476.1; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: PFL_1063
symbol: valS
gene_biotype: protein_coding
description:
  valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: PFL_1065
symbol: holC
gene_biotype: protein_coding
description:
  DNA polymerase III, chi subunit; Identified by similarity to SP:P28905; match to protein family HMM PF04364.


ensembl_gene_id: PFL_1066
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: PFL_1069
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: PFL_1070
symbol: lepB
gene_biotype: protein_coding
description:
  Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.


ensembl_gene_id: PFL_1071
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: PFL_1072
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: PFL_1074
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: PFL_1075
symbol: mltF
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase F; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.


ensembl_gene_id: PFL_1076
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: PFL_1078
symbol: nagE
gene_biotype: protein_coding
description:
  PTS system, N-acetylglucosamine-specific IIBC component; Identified by similarity to GB:AAG07148.1; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998.


ensembl_gene_id: PFL_1079
symbol: nagF
gene_biotype: protein_coding
description:
  PTS system, N-acetylglucosamine-specific IIA component; Identified by similarity to GB:AAG07147.1; match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417.


ensembl_gene_id: PFL_1081
symbol: nagA
gene_biotype: protein_coding
description:
  N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.


ensembl_gene_id: PFL_1082
symbol: PFL_1082
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family/UbiC transcription regulator-associated domain protein; Identified by similarity to SP:P76420; match to protein family HMM PF00392; match to protein family HMM PF07702.


ensembl_gene_id: PFL_1086
symbol: PFL_1086
gene_biotype: protein_coding
description:
  Transferase hexapeptide repeat-containing protein; Identified by match to protein family HMM PF00132.


ensembl_gene_id: PFL_1089
symbol: purT
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.


ensembl_gene_id: PFL_1091
symbol: PFL_1091
gene_biotype: protein_coding
description:
  CBS domain/transporter domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.


ensembl_gene_id: PFL_1093
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: PFL_1094
symbol: rpsP
gene_biotype: protein_coding
description:
  Ribosomal protein S16; Identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: PFL_1095
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: PFL_1096
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: PFL_1097
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: PFL_1100
symbol: PFL_1100
gene_biotype: protein_coding
description:
  Transporter, CPA2 family; Identified by match to protein family HMM PF00999; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: PFL_1101
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: PFL_1102
symbol: dsbC
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: PFL_1103
symbol: hom
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Identified by similarity to SP:P29365; match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447.


ensembl_gene_id: PFL_1104
symbol: thrC
gene_biotype: protein_coding
description:
  Threonine synthase; Identified by similarity to SP:P29363; match to protein family HMM PF00291; match to protein family HMM TIGR00260.


ensembl_gene_id: PFL_1105
symbol: PFL_1105
gene_biotype: protein_coding
description:
  Sensory box histidine kinase/response regulator; Identified by similarity to SP:P16575; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_1106
symbol: PFL_1106
gene_biotype: protein_coding
description:
  Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.


ensembl_gene_id: PFL_1107
symbol: PFL_1107
gene_biotype: protein_coding
description:
  DNA-binding response regulator, LuxR family; Identified by similarity to SP:P14374; match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: PFL_1120
symbol: recJ
gene_biotype: protein_coding
description:
  single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.


ensembl_gene_id: PFL_1121
symbol: xenA
gene_biotype: protein_coding
description:
  Putative xenobiotic reductase A; Identified by similarity to GB:AAF02538.1; match to protein family HMM PF00724.


ensembl_gene_id: PFL_1122
symbol: mdoD
gene_biotype: protein_coding
description:
  Glucans biosynthesis protein D; Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs). Belongs to the OpgD/OpgG family.


ensembl_gene_id: PFL_1124
symbol: PFL_1124
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by match to protein family HMM PF04171; match to protein family HMM PF04235.


ensembl_gene_id: PFL_1131
symbol: PFL_1131
gene_biotype: protein_coding
description:
  Chemotaxis protein methyltransferase, CheR family; Identified by similarity to GB:AAO92335.1; match to protein family HMM PF01739; match to protein family HMM PF03705.


ensembl_gene_id: PFL_1133
symbol: PFL_1133
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by similarity to GB:AAL46994.1; similarity to GB:AAO92337.1; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.


ensembl_gene_id: PFL_1134
symbol: cheB1
gene_biotype: protein_coding
description:
  Response regulator domain/methylesterase, CheB family; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: PFL_1135
symbol: PFL_1135
gene_biotype: protein_coding
description:
  Response regulator/diguanylate cyclase domain protein; Identified by similarity to GB:AAL71852.1; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_1137
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: PFL_1138
symbol: lysS
gene_biotype: protein_coding
description:
  lysine--tRNA ligase; Identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF00587; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: PFL_1141
symbol: PFL_1141
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF08014; match to protein family HMM TIGR02421.


ensembl_gene_id: PFL_1147
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.


ensembl_gene_id: PFL_1148
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: PFL_1151
symbol: PFL_1151
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:P37348; match to protein family HMM PF01904.


ensembl_gene_id: PFL_1161
symbol: plsB
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.


ensembl_gene_id: PFL_1164
symbol: rrmA
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase A; Identified by similarity to SP:P36999; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_1165
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: PFL_1169
symbol: sufS
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS family protein; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.


ensembl_gene_id: PFL_1170
symbol: dapD
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.


ensembl_gene_id: PFL_1171
symbol: PFL_1171
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family.


ensembl_gene_id: PFL_1172
symbol: PFL_1172
gene_biotype: protein_coding
description:
  Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: PFL_1173
symbol: dapC
gene_biotype: protein_coding
description:
  Succinyldiaminopimelate transaminase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.


ensembl_gene_id: PFL_1174
symbol: glnD
gene_biotype: protein_coding
description:
  protein-P-II uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.


ensembl_gene_id: PFL_1175
symbol: map_1
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: PFL_1176
symbol: rpsB
gene_biotype: protein_coding
description:
  Ribosomal protein S2; Identified by similarity to SP:P02351; match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: PFL_1177
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: PFL_1179
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: PFL_1180
symbol: uppS
gene_biotype: protein_coding
description:
  Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.


ensembl_gene_id: PFL_1181
symbol: cdsA_1
gene_biotype: protein_coding
description:
  Phosphatidate cytidylyltransferase; Identified by similarity to SP:P0ABG1; match to protein family HMM PF01148; Belongs to the CDS family.


ensembl_gene_id: PFL_1182
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: PFL_1183
symbol: rseP
gene_biotype: protein_coding
description:
  RIP metalloprotease RseP; Identified by similarity to SP:P0AEH1; match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.


ensembl_gene_id: PFL_1184
symbol: yaeT
gene_biotype: protein_coding
description:
  Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: PFL_1185
symbol: PFL_1185
gene_biotype: protein_coding
description:
  Outer membrane protein, Skp family; Identified by similarity to SP:P31519; match to protein family HMM PF03938.


ensembl_gene_id: PFL_1186
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: PFL_1187
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: PFL_1188
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: PFL_1189
symbol: lpxB
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: PFL_1190
symbol: rnhB
gene_biotype: protein_coding
description:
  Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.


ensembl_gene_id: PFL_1191
symbol: dnaE
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594.


ensembl_gene_id: PFL_1192
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: PFL_1193
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: PFL_1194
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: PFL_1195
symbol: kdsA
gene_biotype: protein_coding
description:
  3-deoxy-8-phosphooctulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01362; Belongs to the KdsA family.


ensembl_gene_id: PFL_1196
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.


ensembl_gene_id: PFL_1197
symbol: ftsB
gene_biotype: protein_coding
description:
  Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: PFL_1198
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: PFL_1200
symbol: PFL_1200
gene_biotype: protein_coding
description:
  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818.


ensembl_gene_id: PFL_1202
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: PFL_1203
symbol: truD
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.


ensembl_gene_id: PFL_1204
symbol: surE
gene_biotype: protein_coding
description:
  5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: PFL_1205
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: PFL_1206
symbol: nlpD
gene_biotype: protein_coding
description:
  Putative lipoprotein NlpD; Identified by similarity to SP:P0ADA4; match to protein family HMM PF01476; match to protein family HMM PF01551.


ensembl_gene_id: PFL_1207
symbol: rpoS
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.


ensembl_gene_id: PFL_1208
symbol: fdxA
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: PFL_1209
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: PFL_1210
symbol: prtR
gene_biotype: protein_coding
description:
  Transcriptional regulator PrtR; Identified by similarity to SP:Q06553; match to protein family HMM PF00717; match to protein family HMM PF01381.


ensembl_gene_id: PFL_1216
symbol: PFL_1216
gene_biotype: protein_coding
description:
  Putative bacteriophage Mu tail sheath protein (GpL); Identified by match to protein family HMM PF06274.


ensembl_gene_id: PFL_1220
symbol: PFL_1220
gene_biotype: protein_coding
description:
  DNA circulation protein, N-terminal domain protein; Identified by match to protein family HMM PF07157.


ensembl_gene_id: PFL_1222
symbol: PFL_1222
gene_biotype: protein_coding
description:
  Prophage MuSo2, baseplate assembly protein V; Identified by match to protein family HMM PF06890; match to protein family HMM TIGR01644.


ensembl_gene_id: PFL_1229
symbol: llpA1
gene_biotype: protein_coding
description:
  Bacteriocin LlpA1; See Parret et al 2005 (PMID:16151105) for more information; identified by similarity to GB:AAM95702.1; match to protein family HMM PF01453.


ensembl_gene_id: PFL_1230
symbol: cinA
gene_biotype: protein_coding
description:
  Competence/damage-inducible protein CinA; Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.


ensembl_gene_id: PFL_1231
symbol: recA
gene_biotype: protein_coding
description:
  RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: PFL_1233
symbol: PFL_1233
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730.


ensembl_gene_id: PFL_1239
symbol: dgkA
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: PFL_1240
symbol: PFL_1240
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P0ACR4; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_1241
symbol: fpr_1
gene_biotype: protein_coding
description:
  ferredoxin--NADP(+) reductase; Identified by similarity to SP:Q44532; match to protein family HMM PF00175; match to protein family HMM PF00970.


ensembl_gene_id: PFL_1242
symbol: PFL_1242
gene_biotype: protein_coding
description:
  Methyltransferase, YaeB/AF_0241 family; Identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104.


ensembl_gene_id: PFL_1243
symbol: rhlG
gene_biotype: protein_coding
description:
  Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by similarity to SP:Q9RPT1; match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: PFL_1247
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: PFL_1248
symbol: kup
gene_biotype: protein_coding
description:
  Putative potassium uptake protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: PFL_1251
symbol: PFL_1251
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.


ensembl_gene_id: PFL_1254
symbol: dinB
gene_biotype: protein_coding
description:
  DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: PFL_1256
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]


ensembl_gene_id: PFL_1258
symbol: ybaZ
gene_biotype: protein_coding
description:
  DNA base-flipping protein YbaZ; Identified by similarity to SP:P0AFP2; match to protein family HMM PF01035.


ensembl_gene_id: PFL_1260
symbol: capB
gene_biotype: protein_coding
description:
  Cold shock protein CapB; Identified by similarity to SP:P0A106; match to protein family HMM PF00313.


ensembl_gene_id: PFL_1263
symbol: hisP
gene_biotype: protein_coding
description:
  Histidine ABC transporter, ATP-binding protein HisP; Identified by similarity to SP:P07109; match to protein family HMM PF00005.


ensembl_gene_id: PFL_1265
symbol: hisM
gene_biotype: protein_coding
description:
  Histidine ABC transporter, permease protein HisM; Identified by similarity to SP:P0AEU3; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_1266
symbol: hisQ
gene_biotype: protein_coding
description:
  Histidine ABC transporter, permease protein HisQ; Identified by similarity to SP:P52094; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_1267
symbol: hisJ
gene_biotype: protein_coding
description:
  Histidine ABC transporter, periplasmic histidine-binding protein HisJ; Identified by similarity to SP:P0AEU0; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: PFL_1268
symbol: quiP
gene_biotype: protein_coding
description:
  Acyl-homoserine lactone acylase QuiP; Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of seven or more carbons in length) (By similarity).


ensembl_gene_id: PFL_1269
symbol: PFL_1269
gene_biotype: protein_coding
description:
  Glutathione S-transferase; Identified by similarity to SP:P77526; match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.


ensembl_gene_id: PFL_1273
symbol: PFL_1273
gene_biotype: protein_coding
description:
  SEC-C domain protein; Identified by match to protein family HMM PF02810; Belongs to the UPF0225 family.


ensembl_gene_id: PFL_1283
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: PFL_1285
symbol: PFL_1285
gene_biotype: protein_coding
description:
  Surface antigen protein, Rickettsia 17 kDa family; Identified by similarity to SP:P31484; match to protein family HMM PF05433.


ensembl_gene_id: PFL_1286
symbol: nhaA
gene_biotype: protein_coding
description:
  Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: PFL_1287
symbol: PFL_1287
gene_biotype: protein_coding
description:
  Pyridoxal-phosphate dependent enzyme family protein; Identified by match to protein family HMM PF00291.


ensembl_gene_id: PFL_1288
symbol: PFL_1288
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF07992.


ensembl_gene_id: PFL_1294
symbol: PFL_1294
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF05114; Belongs to the UPF0276 family.


ensembl_gene_id: PFL_1296
symbol: braG
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP-binding protein BraG; Identified by similarity to SP:P21630; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_1297
symbol: braF
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP-binding protein BraF; Identified by similarity to SP:P21629; match to protein family HMM PF00005.


ensembl_gene_id: PFL_1298
symbol: braE
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, permease protein BraE; Identified by similarity to SP:P21628; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_1299
symbol: braD
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, permease protein BraD; Identified by similarity to SP:P21627; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_1300
symbol: braC
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system substrate-binding protein; Identified by similarity to SP:P21175; match to protein family HMM PF01094.


ensembl_gene_id: PFL_1304
symbol: PFL_1304
gene_biotype: protein_coding
description:
  Signaling repeat/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_1307
symbol: hepA/rapA
gene_biotype: protein_coding
description:
  RNA polymerase-associated helicase protein HepA/RapA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.


ensembl_gene_id: PFL_1313
symbol: pitA_1
gene_biotype: protein_coding
description:
  Low-affinity inorganic phosphate transporter; Identified by similarity to SP:P0AFJ7; match to protein family HMM PF01384.


ensembl_gene_id: PFL_1315
symbol: pcaR
gene_biotype: protein_coding
description:
  Pca regulon regulatory protein PcaR; Identified by similarity to SP:Q52154; match to protein family HMM PF01614; match to protein family HMM PF09339; match to protein family HMM TIGR02431.


ensembl_gene_id: PFL_1316
symbol: pcaK
gene_biotype: protein_coding
description:
  4-hydroxybenzoate transporter PcaK; Identified by similarity to SP:Q51955; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00895.


ensembl_gene_id: PFL_1317
symbol: catI
gene_biotype: protein_coding
description:
  3-oxoadipate:succinyl-CoA transferase, A subunit; Identified by similarity to GB:AAL02405.1; match to protein family HMM PF01144.


ensembl_gene_id: PFL_1318
symbol: catJ
gene_biotype: protein_coding
description:
  3-oxoadipate:succinyl-CoA transferase, B subunit; Identified by similarity to GB:AAL02406.1; match to protein family HMM PF01144.


ensembl_gene_id: PFL_1319
symbol: pcaF
gene_biotype: protein_coding
description:
  Beta-ketoadipyl CoA thiolase; Identified by similarity to SP:Q51956; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; match to protein family HMM TIGR02430; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PFL_1320
symbol: pcaH_1
gene_biotype: protein_coding
description:
  Protocatechuate 3,4-dioxygenase, beta subunit; Identified by similarity to SP:P15110; match to protein family HMM PF00775; match to protein family HMM TIGR02422.


ensembl_gene_id: PFL_1321
symbol: pcaG_1
gene_biotype: protein_coding
description:
  Protocatechuate 3,4-dioxygenase, alpha subunit; Identified by similarity to SP:P20371; match to protein family HMM PF00775; match to protein family HMM TIGR02423.


ensembl_gene_id: PFL_1322
symbol: PFL_1322
gene_biotype: protein_coding
description:
  MFS transporter, metabolite:H+ symporter (MHS) family protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883.


ensembl_gene_id: PFL_1323
symbol: pcaB
gene_biotype: protein_coding
description:
  3-carboxy-cis,cis-muconate cycloisomerase; Identified by similarity to SP:O31385; match to protein family HMM PF00206; match to protein family HMM TIGR02426.


ensembl_gene_id: PFL_1324
symbol: pcaD
gene_biotype: protein_coding
description:
  3-oxoadipate enol-lactonase; Identified by similarity to GB:AAL02408.1; match to protein family HMM PF00561; match to protein family HMM TIGR02427.


ensembl_gene_id: PFL_1325
symbol: pcaC
gene_biotype: protein_coding
description:
  4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425.


ensembl_gene_id: PFL_1326
symbol: tam
gene_biotype: protein_coding
description:
  Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.


ensembl_gene_id: PFL_1328
symbol: PFL_1328
gene_biotype: protein_coding
description:
  Oxidoreductase, pyridine nucleotide-disulfide family; Identified by similarity to PIR:B83326; match to protein family HMM PF07992.


ensembl_gene_id: PFL_1330
symbol: emhC
gene_biotype: protein_coding
description:
  Efflux transporter, outer membrane factor lipoprotein EmhC; Identified by similarity to GB:AAQ92182.1; match to protein family HMM PF02321; match to protein family HMM TIGR01845.


ensembl_gene_id: PFL_1331
symbol: emhB
gene_biotype: protein_coding
description:
  Efflux transporter, permease protein EmhB; Identified by similarity to GB:AAQ92181.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915.


ensembl_gene_id: PFL_1332
symbol: emhA
gene_biotype: protein_coding
description:
  Efflux transporter, membrane fusion protein subunit EmhA; Identified by similarity to GB:AAQ92180.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_1333
symbol: emhR
gene_biotype: protein_coding
description:
  Transcriptional regulator EmhR; Identified by similarity to GB:AAQ92183.1; match to protein family HMM PF00440; match to protein family HMM PF08361.


ensembl_gene_id: PFL_1335
symbol: xenB
gene_biotype: protein_coding
description:
  Xenobiotic reductase B; Identified by similarity to GB:AAF02539.1; match to protein family HMM PF00724.


ensembl_gene_id: PFL_1344
symbol: PFL_1344
gene_biotype: protein_coding
description:
  Amidohydrolase; Identified by similarity to SP:P45493; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: PFL_1347
symbol: PFL_1347
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; Identified by similarity to SP:P77569; match to protein family HMM PF09339.


ensembl_gene_id: PFL_1351
symbol: bglX
gene_biotype: protein_coding
description:
  Periplasmic beta-glucosidase; Identified by similarity to SP:P33363; match to protein family HMM PF00933; match to protein family HMM PF01915.


ensembl_gene_id: PFL_1358
symbol: PFL_1358
gene_biotype: protein_coding
description:
  Intracellular protease, PfpI family; Identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382.


ensembl_gene_id: PFL_1364
symbol: PFL_1364
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: PFL_1371
symbol: PFL_1371
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane heme receptor; Transducer; identified by similarity to SP:Q7VNU1; match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786.


ensembl_gene_id: PFL_1372
symbol: PFL_1372
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein, FecR/PupR family; Identified by match to protein family HMM PF04773.


ensembl_gene_id: PFL_1377
symbol: ssuC2
gene_biotype: protein_coding
description:
  Aliphatic sulfonates ABC transporter, permease protein; Identified by similarity to SP:P75851; match to protein family HMM PF00528.


ensembl_gene_id: PFL_1378
symbol: ssuB2
gene_biotype: protein_coding
description:
  Aliphatic sulfonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PFL_1380
symbol: PFL_1380
gene_biotype: protein_coding
description:
  D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF02826.


ensembl_gene_id: PFL_1382
symbol: PFL_1382
gene_biotype: protein_coding
description:
  ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_1384
symbol: PFL_1384
gene_biotype: protein_coding
description:
  Monoamine oxidase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_1387
symbol: PFL_1387
gene_biotype: protein_coding
description:
  Alkanesulfonate ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P75853; match to protein family HMM TIGR01728.


ensembl_gene_id: PFL_1390
symbol: PFL_1390
gene_biotype: protein_coding
description:
  Drug resistance MFS transporter, drug:H+ antiporter-2 family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.


ensembl_gene_id: PFL_1392
symbol: PFL_1392
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:P76402; match to protein family HMM PF07411.


ensembl_gene_id: PFL_1397
symbol: PFL_1397
gene_biotype: protein_coding
description:
  DNA-binding domain/cupin domain protein; Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.


ensembl_gene_id: PFL_1399
symbol: adhB
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase II; Identified by similarity to SP:P06758; match to protein family HMM PF00465.


ensembl_gene_id: PFL_1403
symbol: PFL_1403
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_1408
symbol: PFL_1408
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF08448.


ensembl_gene_id: PFL_1409
symbol: PFL_1409
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF04324; match to protein family HMM PF07992.


ensembl_gene_id: PFL_1410
symbol: PFL_1410
gene_biotype: protein_coding
description:
  2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111.


ensembl_gene_id: PFL_1412
symbol: PFL_1412
gene_biotype: protein_coding
description:
  Proline racemase family protein; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Displays no proline racemase activity.


ensembl_gene_id: PFL_1414
symbol: yveA
gene_biotype: protein_coding
description:
  Aspartate:proton symporter YveA; Identified by similarity to SP:O07002; match to protein family HMM PF00324.


ensembl_gene_id: PFL_1415
symbol: aldH_1
gene_biotype: protein_coding
description:
  NADP-dependent fatty aldehyde dehydrogenase; Identified by similarity to SP:Q56694; match to protein family HMM PF00171.


ensembl_gene_id: PFL_1416
symbol: PFL_1416
gene_biotype: protein_coding
description:
  malate/L-lactate dehydrogenase family protein; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. May be involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline.


ensembl_gene_id: PFL_1425
symbol: PFL_1425
gene_biotype: protein_coding
description:
  GAF domain/cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF01590.


ensembl_gene_id: PFL_1429
symbol: phaG
gene_biotype: protein_coding
description:
  (R)-3-hydroxydecanoyl-ACP:CoA transacylase; Identified by similarity to SP:O85207; match to protein family HMM PF00561.


ensembl_gene_id: PFL_1430
symbol: rsuA
gene_biotype: protein_coding
description:
  Ribosomal small subunit pseudouridine synthase A; Identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: PFL_1435
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: PFL_1436
symbol: PFL_1436
gene_biotype: protein_coding
description:
  Putative membrane protein AbrB; Identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082.


ensembl_gene_id: PFL_1439
symbol: PFL_1439
gene_biotype: protein_coding
description:
  Periplasmic tricarboxylate-binding receptor, TTT family; Identified by match to protein family HMM PF03401.


ensembl_gene_id: PFL_1441
symbol: PFL_1441
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Identified by similarity to SP:P22104; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_1442
symbol: PFL_1442
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521.


ensembl_gene_id: PFL_1444
symbol: ygfZ
gene_biotype: protein_coding
description:
  Folate-binding protein YgfZ; Identified by match to protein family HMM PF01571; match to protein family HMM TIGR03317; Belongs to the GcvT family.


ensembl_gene_id: PFL_1445
symbol: sdhE
gene_biotype: protein_coding
description:
  TPR repeat region protein; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well.


ensembl_gene_id: PFL_1448
symbol: algU
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor AlgU; See Schnider-Keel et. al. 2001 (PMID: 11722923); identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02939; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_1449
symbol: mucA
gene_biotype: protein_coding
description:
  Sigma factor AlgU negative regulatory protein MucA; Identified by similarity to GB:AAK94007.1; match to protein family HMM PF03872; match to protein family HMM PF03873.


ensembl_gene_id: PFL_1450
symbol: mucB
gene_biotype: protein_coding
description:
  Sigma factor AlgU regulatory protein MucB; Identified by similarity to SP:P38108; match to protein family HMM PF03888.


ensembl_gene_id: PFL_1451
symbol: mucD
gene_biotype: protein_coding
description:
  Serine protease MucD; Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions.


ensembl_gene_id: PFL_1452
symbol: PFL_1452
gene_biotype: protein_coding
description:
  Peptidase, M48 family; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.


ensembl_gene_id: PFL_1453
symbol: PFL_1453
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: PFL_1455
symbol: PFL_1455
gene_biotype: protein_coding
description:
  Antioxidant, AhpC/TSA family; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.


ensembl_gene_id: PFL_1457
symbol: dapA_1
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: PFL_1460
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Identified by similarity to SP:P21155; match to protein family HMM PF01259; match to protein family HMM TIGR00081; Belongs to the SAICAR synthetase family.


ensembl_gene_id: PFL_1462
symbol: cupB1
gene_biotype: protein_coding
description:
  Type I pilus biogensis protein CupB1; Identified by similarity to GB:AAG07473.1; match to protein family HMM PF00419.


ensembl_gene_id: PFL_1463
symbol: cupB2
gene_biotype: protein_coding
description:
  Pilus assembly chaperone CupB2; Identified by similarity to GB:AAG07472.1; match to protein family HMM PF00345; match to protein family HMM PF02753.


ensembl_gene_id: PFL_1464
symbol: cupB3
gene_biotype: protein_coding
description:
  Outer membrane usher protein CupB3; Identified by similarity to SP:P33129; match to protein family HMM PF00577.


ensembl_gene_id: PFL_1465
symbol: cupB4
gene_biotype: protein_coding
description:
  Pili assembly chaperone CupB4; Identified by similarity to GB:AAG07470.1; match to protein family HMM PF00345.


ensembl_gene_id: PFL_1466
symbol: PFL_1466
gene_biotype: protein_coding
description:
  Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM PF08479.


ensembl_gene_id: PFL_1467
symbol: cupB5
gene_biotype: protein_coding
description:
  Adhesive protein CupB5; Identified by similarity to GB:AAG07469.1; match to protein family HMM PF05860; match to protein family HMM PF07581; match to protein family HMM TIGR01901.


ensembl_gene_id: PFL_1468
symbol: cupB6
gene_biotype: protein_coding
description:
  Fimbrial subunit CupB6; Identified by similarity to GB:AAG07468.1; match to protein family HMM PF00419.


ensembl_gene_id: PFL_1469
symbol: PFL_1469
gene_biotype: protein_coding
description:
  Putative adhesive protein CupB5; Identified by similarity to GB:AAG07469.1; match to protein family HMM PF05860; match to protein family HMM PF07581; match to protein family HMM TIGR01901.


ensembl_gene_id: PFL_1474
symbol: PFL_1474
gene_biotype: protein_coding
description:
  Oxidoreductase, 2-nitropropane dioxygenase family; Identified by match to protein family HMM PF03060.


ensembl_gene_id: PFL_1476
symbol: PFL_1476
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.


ensembl_gene_id: PFL_1477
symbol: PFL_1477
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.


ensembl_gene_id: PFL_1478
symbol: PFL_1478
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PFL_1479
symbol: PFL_1479
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase family protein; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: PFL_1481
symbol: PFL_1481
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.


ensembl_gene_id: PFL_1484
symbol: PFL_1484
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to GB:CAA07694.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_1486
symbol: hpcD_1
gene_biotype: protein_coding
description:
  5-carboxymethyl-2-hydroxymuconate delta isomerase; Identified by similarity to SP:Q05354; match to protein family HMM PF02962.


ensembl_gene_id: PFL_1490
symbol: cynS
gene_biotype: protein_coding
description:
  Cyanase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.


ensembl_gene_id: PFL_1492
symbol: cynR
gene_biotype: protein_coding
description:
  HTH-type transcriptional regulator CynR; Identified by similarity to SP:P27111; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_1494
symbol: PFL_1494
gene_biotype: protein_coding
description:
  SAM dependent methyltransferase; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_1495
symbol: rnd
gene_biotype: protein_coding
description:
  Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.


ensembl_gene_id: PFL_1499
symbol: PFL_1499
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF03692; Belongs to the UPF0260 family.


ensembl_gene_id: PFL_1507
symbol: ptrB
gene_biotype: protein_coding
description:
  Protease 2; Identified by similarity to SP:P24555; match to protein family HMM PF00326; match to protein family HMM PF02897.


ensembl_gene_id: PFL_1511
symbol: PFL_1511
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P94501; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_1513
symbol: pxpA
gene_biotype: protein_coding
description:
  LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: PFL_1515
symbol: PFL_1515
gene_biotype: protein_coding
description:
  Allophanate hydrolase subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.


ensembl_gene_id: PFL_1517
symbol: PFL_1517
gene_biotype: protein_coding
description:
  ATPase, AAA family; Identified by match to protein family HMM PF00004; match to protein family HMM PF07728.


ensembl_gene_id: PFL_1519
symbol: cysK
gene_biotype: protein_coding
description:
  Cysteine synthase A; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: PFL_1526
symbol: PFL_1526
gene_biotype: protein_coding
description:
  Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: PFL_1530
symbol: aceK
gene_biotype: protein_coding
description:
  [isocitrate dehydrogenase (NADP(+))] kinase; Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation.


ensembl_gene_id: PFL_1531
symbol: hrpA
gene_biotype: protein_coding
description:
  ATP-dependent helicase HrpA; Identified by similarity to SP:P43329; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967.


ensembl_gene_id: PFL_1532
symbol: fabH_1
gene_biotype: protein_coding
description:
  Putative 3-oxoacyl-[acyl-carrier-protein] synthase 3; Identified by match to protein family HMM PF00109; match to protein family HMM PF08541; match to protein family HMM PF08545.


ensembl_gene_id: PFL_1535
symbol: oprO
gene_biotype: protein_coding
description:
  Outer membrane porin OprO; Identified by similarity to SP:P32977; match to protein family HMM PF07396.


ensembl_gene_id: PFL_1540
symbol: aqpZ
gene_biotype: protein_coding
description:
  Aquaporin Z; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: PFL_1542
symbol: ppiA
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: PFL_1546
symbol: azoR
gene_biotype: protein_coding
description:
  FMN-dependent NADH-azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: PFL_1547
symbol: PFL_1547
gene_biotype: protein_coding
description:
  Transporter, 10 TMS drug/metabolite exporter (DME) family; Identified by match to protein family HMM PF00892.


ensembl_gene_id: PFL_1549
symbol: PFL_1549
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family.


ensembl_gene_id: PFL_1551
symbol: PFL_1551
gene_biotype: protein_coding
description:
  Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.


ensembl_gene_id: PFL_1552
symbol: PFL_1552
gene_biotype: protein_coding
description:
  Filamentous hemagglutinin family protein, intein-containing; Identified by match to protein family HMM PF04830; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01443; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901.


ensembl_gene_id: PFL_1556
symbol: PFL_1556
gene_biotype: protein_coding
description:
  Identified by similarity to GB:AAG03431.1; match to protein family HMM PF04830; match to protein family HMM PF05594; match to protein family HMM TIGR01731.


ensembl_gene_id: PFL_1558
symbol: PFL_1558
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF06445.


ensembl_gene_id: PFL_1567
symbol: PFL_1567
gene_biotype: protein_coding
description:
  Transporter, major facilitator family; Identified by match to protein family HMM PF06779; match to protein family HMM PF07690.


ensembl_gene_id: PFL_1568
symbol: PFL_1568
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P77309; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_1573
symbol: PFL_1573
gene_biotype: protein_coding
description:
  Transporter, SSS family; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PFL_1574
symbol: speB
gene_biotype: protein_coding
description:
  Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.


ensembl_gene_id: PFL_1579
symbol: recQ
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.


ensembl_gene_id: PFL_1581
symbol: PFL_1581
gene_biotype: protein_coding
description:
  Phospholipase, patatin family; Identified by match to protein family HMM PF01734; match to protein family HMM PF07244.


ensembl_gene_id: PFL_1582
symbol: PFL_1582
gene_biotype: protein_coding
description:
  selT/selW/selH selenoprotein domain protein; Identified by match to protein family HMM PF05169; match to protein family HMM TIGR02174.


ensembl_gene_id: PFL_1583
symbol: PFL_1583
gene_biotype: protein_coding
description:
  Transporter, drug/metabolite exporter family; Identified by match to protein family HMM PF00892; match to protein family HMM PF08449.


ensembl_gene_id: PFL_1584
symbol: PFL_1584
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF07883.


ensembl_gene_id: PFL_1589
symbol: trkH
gene_biotype: protein_coding
description:
  Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.


ensembl_gene_id: PFL_1591
symbol: PFL_1591
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_1593
symbol: PFL_1593
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Identified by similarity to SP:P0AE88; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_1596
symbol: ispZ
gene_biotype: protein_coding
description:
  Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: PFL_1598
symbol: PFL_1598
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.


ensembl_gene_id: PFL_1599
symbol: scpA
gene_biotype: protein_coding
description:
  Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: PFL_1600
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: PFL_1602
symbol: rluB
gene_biotype: protein_coding
description:
  Pseudouridine synthase B, ribosomal large subunit; Identified by similarity to SP:P37765; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: PFL_1611
symbol: phhA
gene_biotype: protein_coding
description:
  Phenylalanine-4-hydroxylase; Identified by similarity to SP:P30967; match to protein family HMM PF00351; match to protein family HMM TIGR01267.


ensembl_gene_id: PFL_1612
symbol: phhR
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator PhhR; Identified by similarity to GB:AAC44635.1; match to protein family HMM PF00158; match to protein family HMM PF01842.


ensembl_gene_id: PFL_1613
symbol: flgF
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgF; Identified by match to protein family HMM PF00460; match to protein family HMM TIGR02490; match to protein family HMM TIGR03506; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PFL_1614
symbol: flgG
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgG; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488; match to protein family HMM TIGR03506; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PFL_1615
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: PFL_1616
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: PFL_1617
symbol: flgJ
gene_biotype: protein_coding
description:
  Flagellar rod assembly protein/muramidase FlgJ; Identified by match to protein family HMM PF01832; match to protein family HMM TIGR02541.


ensembl_gene_id: PFL_1618
symbol: flgK
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PFL_1619
symbol: flgL
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550.


ensembl_gene_id: PFL_1622
symbol: pseC
gene_biotype: protein_coding
description:
  UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR03588; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: PFL_1623
symbol: pseF
gene_biotype: protein_coding
description:
  Pseudaminic acid CMP-transferase; Identified by similarity to SP:Q57385; match to protein family HMM PF02348; match to protein family HMM TIGR03584.


ensembl_gene_id: PFL_1624
symbol: pseG
gene_biotype: protein_coding
description:
  Pseudaminic acid biosynthesis-associated protein PseG; Identified by match to protein family HMM PF00583; match to protein family HMM TIGR03590.


ensembl_gene_id: PFL_1625
symbol: pseI
gene_biotype: protein_coding
description:
  Pseudaminic acid synthase; Identified by match to protein family HMM PF03102; match to protein family HMM PF08666; match to protein family HMM TIGR03586.


ensembl_gene_id: PFL_1626
symbol: fabH_2
gene_biotype: protein_coding
description:
  Putative 3-oxoacyl-[acyl-carrier-protein] synthase 3; Identified by match to protein family HMM PF08541; match to protein family HMM PF08545.


ensembl_gene_id: PFL_1629
symbol: fliC
gene_biotype: protein_coding
description:
  Flagellin FliC; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: PFL_1630
symbol: flaG
gene_biotype: protein_coding
description:
  Flagellar protein FlaG; Identified by similarity to GB:AAT42121.1; match to protein family HMM PF03646.


ensembl_gene_id: PFL_1631
symbol: fliD
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: PFL_1632
symbol: fliS
gene_biotype: protein_coding
description:
  Flagellar protein FliS; Identified by similarity to GB:AAT42123.1; match to protein family HMM PF02561; match to protein family HMM TIGR00208.


ensembl_gene_id: PFL_1634
symbol: fleQ
gene_biotype: protein_coding
description:
  Sigma 54 dependent transcriptional regulator FleQ; Identified by similarity to GB:AAG47964.1; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06490.


ensembl_gene_id: PFL_1635
symbol: fleS
gene_biotype: protein_coding
description:
  Sensory box histidine kinase FleS; Identified by similarity to GB:AAA93529.1; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518.


ensembl_gene_id: PFL_1636
symbol: fleR
gene_biotype: protein_coding
description:
  Sigma-54 dependent DNA-binding response regulator FleR; Identified by similarity to GB:AAA93530.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954.


ensembl_gene_id: PFL_1637
symbol: fliE
gene_biotype: protein_coding
description:
  Flagellar hook-basal body complex protein FliE; Identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205.


ensembl_gene_id: PFL_1638
symbol: fliF
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: PFL_1639
symbol: fliG
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: PFL_1641
symbol: fliI
gene_biotype: protein_coding
description:
  Flagellum-specific ATP synthase FliI; Identified by similarity to SP:P26465; match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496.


ensembl_gene_id: PFL_1644
symbol: PFL_1644
gene_biotype: protein_coding
description:
  Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.


ensembl_gene_id: PFL_1647
symbol: fliL
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: PFL_1648
symbol: fliM
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: PFL_1649
symbol: fliN
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.


ensembl_gene_id: PFL_1650
symbol: fliO
gene_biotype: protein_coding
description:
  Flagellar protein FliO; Identified by similarity to SP:Q51467; match to protein family HMM PF04347; match to protein family HMM TIGR03500.


ensembl_gene_id: PFL_1651
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: PFL_1652
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: PFL_1653
symbol: fliR
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: PFL_1654
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: PFL_1655
symbol: PFL_1655
gene_biotype: protein_coding
description:
  Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: PFL_1664
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: PFL_1665
symbol: flhF
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhF; Identified by match to protein family HMM PF00448; match to protein family HMM TIGR03499.


ensembl_gene_id: PFL_1667
symbol: fliA
gene_biotype: protein_coding
description:
  Motility sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.


ensembl_gene_id: PFL_1668
symbol: cheY
gene_biotype: protein_coding
description:
  Chemotaxis protein CheY; Identified by similarity to SP:P0AE67; match to protein family HMM PF00072.


ensembl_gene_id: PFL_1669
symbol: cheZ
gene_biotype: protein_coding
description:
  Chemotaxis phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).


ensembl_gene_id: PFL_1670
symbol: cheA
gene_biotype: protein_coding
description:
  Chemotaxis sensor histidine kinase CheA; Identified by similarity to GB:AAC08064.1; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.


ensembl_gene_id: PFL_1671
symbol: cheB
gene_biotype: protein_coding
description:
  Chemotaxis response regulator/protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: PFL_1672
symbol: PFL_1672
gene_biotype: protein_coding
description:
  Transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.


ensembl_gene_id: PFL_1680
symbol: ccmA
gene_biotype: protein_coding
description:
  Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.


ensembl_gene_id: PFL_1681
symbol: ccmB
gene_biotype: protein_coding
description:
  Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.


ensembl_gene_id: PFL_1682
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: PFL_1683
symbol: ccmD
gene_biotype: protein_coding
description:
  Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.


ensembl_gene_id: PFL_1684
symbol: ccmE
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: PFL_1685
symbol: ccmF
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein CcmF; Identified by similarity to SP:P45404; match to protein family HMM PF01578; match to protein family HMM TIGR00353.


ensembl_gene_id: PFL_1686
symbol: dsbE
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein DsbE; Identified by similarity to SP:P0AA86; match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385.


ensembl_gene_id: PFL_1694
symbol: sbp2
gene_biotype: protein_coding
description:
  Periplasmic sulfate-binding protein; Identified by similarity to SP:P0AG78; match to protein family HMM PF01547; match to protein family HMM TIGR00971.


ensembl_gene_id: PFL_1695
symbol: PFL_1695
gene_biotype: protein_coding
description:
  Transporter, cation channel family; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.


ensembl_gene_id: PFL_1697
symbol: pyk_1
gene_biotype: protein_coding
description:
  Pyruvate kinase; Identified by similarity to SP:Q44473; match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.


ensembl_gene_id: PFL_1698
symbol: ttuD
gene_biotype: protein_coding
description:
  Putative glycerate dehydrogenase; Identified by similarity to SP:Q44472; match to protein family HMM PF05161.


ensembl_gene_id: PFL_1699
symbol: glxR
gene_biotype: protein_coding
description:
  2-hydroxy-3-oxopropionate reductase; Identified by similarity to SP:P77161; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505.


ensembl_gene_id: PFL_1700
symbol: hyi_1
gene_biotype: protein_coding
description:
  Hydroxypyruvate isomerase; Identified by similarity to SP:P30147; match to protein family HMM PF01261; match to protein family HMM TIGR03234; Belongs to the hyi family.


ensembl_gene_id: PFL_1701
symbol: gcl
gene_biotype: protein_coding
description:
  Glyoxylate carboligase; Identified by similarity to SP:P30146; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR01504; Belongs to the TPP enzyme family.


ensembl_gene_id: PFL_1703
symbol: PFL_1703
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440; match to protein family HMM PF08362.


ensembl_gene_id: PFL_1710
symbol: PFL_1710
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, QAT family; Identified by similarity to GB:AAK05549.1; match to protein family HMM PF04069.


ensembl_gene_id: PFL_1712
symbol: actP
gene_biotype: protein_coding
description:
  Cation/acetate symporter ActP; Identified by similarity to SP:P32705; match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PFL_1713
symbol: gltA
gene_biotype: protein_coding
description:
  Citrate synthase I; Identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family.


ensembl_gene_id: PFL_1714
symbol: sdhC
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, cytochrome b556 subunit; Identified by similarity to SP:P10446; match to protein family HMM PF01127; match to protein family HMM TIGR02970.


ensembl_gene_id: PFL_1715
symbol: sdhD
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).


ensembl_gene_id: PFL_1716
symbol: sdhA
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P10444; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: PFL_1717
symbol: sdhB
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P07014; match to protein family HMM TIGR00384.


ensembl_gene_id: PFL_1718
symbol: sucA
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase, E1 component; Identified by similarity to SP:P20707; match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239.


ensembl_gene_id: PFL_1719
symbol: sucB
gene_biotype: protein_coding
description:
  Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: PFL_1720
symbol: lpdA_1
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Identified by similarity to SP:P31052; match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: PFL_1721
symbol: sucC
gene_biotype: protein_coding
description:
  succinate-CoA ligase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: PFL_1722
symbol: sucD
gene_biotype: protein_coding
description:
  succinate-CoA ligase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: PFL_1723
symbol: brnQ
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids.


ensembl_gene_id: PFL_1731
symbol: PFL_1731
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF02678; match to protein family HMM PF05726; Belongs to the pirin family.


ensembl_gene_id: PFL_1736
symbol: fabB
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase I; Identified by similarity to SP:P43710; match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: PFL_1737
symbol: fabA
gene_biotype: protein_coding
description:
  3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.


ensembl_gene_id: PFL_1738
symbol: PFL_1738
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_1741
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: PFL_1743
symbol: sixA
gene_biotype: protein_coding
description:
  Phosphohistidine phosphatase SixA; Identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249.


ensembl_gene_id: PFL_1745
symbol: ydiI
gene_biotype: protein_coding
description:
  Esterase YdiI; Identified by similarity to SP:P77781; match to protein family HMM PF03061; match to protein family HMM TIGR00369.


ensembl_gene_id: PFL_1748
symbol: PFL_1748
gene_biotype: protein_coding
description:
  Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.


ensembl_gene_id: PFL_1753
symbol: PFL_1753
gene_biotype: protein_coding
description:
  DNA-binding response regulator, OmpR family; Identified by similarity to SP:P03025; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_1754
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: PFL_1755
symbol: PFL_1755
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.


ensembl_gene_id: PFL_1756
symbol: PFL_1756
gene_biotype: protein_coding
description:
  Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: PFL_1769
symbol: fadE
gene_biotype: protein_coding
description:
  Acyl-coenzyme A dehydrogenase; Identified by similarity to SP:Q8ZRJ7; match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028; match to protein family HMM PF09317.


ensembl_gene_id: PFL_1771
symbol: PFL_1771
gene_biotype: protein_coding
description:
  Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.


ensembl_gene_id: PFL_1773
symbol: PFL_1773
gene_biotype: protein_coding
description:
  Putative ABC-2 type transporter permease protein; Identified by match to protein family HMM PF01061.


ensembl_gene_id: PFL_1775
symbol: PFL_1775
gene_biotype: protein_coding
description:
  DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.


ensembl_gene_id: PFL_1778
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: PFL_1780
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: PFL_1781
symbol: PFL_1781
gene_biotype: protein_coding
description:
  Low molecular weight phosphotyrosine protein phosphatase; Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: PFL_1783
symbol: iorA
gene_biotype: protein_coding
description:
  Isoquinoline 1-oxidoreductase, alpha subunit; Identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799.


ensembl_gene_id: PFL_1784
symbol: iorB
gene_biotype: protein_coding
description:
  Putative isoquinoline 1-oxidoreductase, beta subunit; Identified by similarity to SP:Q51698; match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_1787
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: PFL_1788
symbol: rluC
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: PFL_1789
symbol: PFL_1789
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.


ensembl_gene_id: PFL_1790
symbol: sppA
gene_biotype: protein_coding
description:
  Signal peptide peptidase SppA, 36K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706.


ensembl_gene_id: PFL_1791
symbol: maf_2
gene_biotype: protein_coding
description:
  Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.


ensembl_gene_id: PFL_1793
symbol: rpmF
gene_biotype: protein_coding
description:
  Ribosomal protein L32; Identified by similarity to SP:P02435; match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: PFL_1794
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: PFL_1795
symbol: fabD
gene_biotype: protein_coding
description:
  [acyl-carrier-protein] S-malonyltransferase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.


ensembl_gene_id: PFL_1796
symbol: fabG
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_1798
symbol: fabF_1
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: PFL_1799
symbol: pabC
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Identified by match to protein family HMM PF01063; match to protein family HMM TIGR03461.


ensembl_gene_id: PFL_1800
symbol: mltG
gene_biotype: protein_coding
description:
  YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: PFL_1801
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: PFL_1805
symbol: moaA_1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: PFL_1808
symbol: PFL_1808
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family/UbiC transcription regulator-associated domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.


ensembl_gene_id: PFL_1816
symbol: PFL_1816
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: PFL_1817
symbol: PFL_1817
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF06719.


ensembl_gene_id: PFL_1818
symbol: PFL_1818
gene_biotype: protein_coding
description:
  Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.


ensembl_gene_id: PFL_1819
symbol: etfB
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P38975; match to protein family HMM PF01012.


ensembl_gene_id: PFL_1820
symbol: etfA
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012.


ensembl_gene_id: PFL_1830
symbol: PFL_1830
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF04169; match to protein family HMM PF04174.


ensembl_gene_id: PFL_1835
symbol: PFL_1835
gene_biotype: protein_coding
description:
  acetyl-CoA C-acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PFL_1836
symbol: PFL_1836
gene_biotype: protein_coding
description:
  Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.


ensembl_gene_id: PFL_1838
symbol: corA
gene_biotype: protein_coding
description:
  Putative magnesium and cobalt transport protein CorA; Identified by match to protein family HMM PF01544.


ensembl_gene_id: PFL_1839
symbol: PFL_1839
gene_biotype: protein_coding
description:
  1-acylglycerol-3-phosphate O-acyltransferase domain protein; Identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.


ensembl_gene_id: PFL_1849
symbol: PFL_1849
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.


ensembl_gene_id: PFL_1853
symbol: PFL_1853
gene_biotype: protein_coding
description:
  Permease, cytosine/purine, uracil, thiamine, allantoin family; Identified by match to protein family HMM PF02133.


ensembl_gene_id: PFL_1854
symbol: cysH
gene_biotype: protein_coding
description:
  Adenylylsulfate reductase, thioredoxin dependent; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: PFL_1855
symbol: thrH
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR02137.


ensembl_gene_id: PFL_1856
symbol: pabB
gene_biotype: protein_coding
description:
  Aminodeoxychorismate synthase, component I; Identified by similarity to SP:P05041; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553.


ensembl_gene_id: PFL_1861
symbol: prpB
gene_biotype: protein_coding
description:
  Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.


ensembl_gene_id: PFL_1862
symbol: prpC
gene_biotype: protein_coding
description:
  2-methylcitrate synthase; Identified by similarity to SP:P31660; match to protein family HMM PF00285; match to protein family HMM TIGR01800; Belongs to the citrate synthase family.


ensembl_gene_id: PFL_1863
symbol: acnD
gene_biotype: protein_coding
description:
  2-methylisocitrate dehydratase, Fe/S-dependent; Identified by match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR02333.


ensembl_gene_id: PFL_1864
symbol: prpF
gene_biotype: protein_coding
description:
  Putative AcnD-accessory protein PrpF; Identified by match to protein family HMM PF04303; match to protein family HMM TIGR02334.


ensembl_gene_id: PFL_1865
symbol: prpD
gene_biotype: protein_coding
description:
  2-methylcitrate dehydratase; Identified by similarity to SP:P77243; match to protein family HMM PF03972; match to protein family HMM TIGR02330.


ensembl_gene_id: PFL_1867
symbol: PFL_1867
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family/aminotransferase, classes I and II family protein; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.


ensembl_gene_id: PFL_1868
symbol: PFL_1868
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: PFL_1869
symbol: ppsA
gene_biotype: protein_coding
description:
  Pyruvate, water dikinase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PFL_1871
symbol: rraA
gene_biotype: protein_coding
description:
  Putative regulator of ribonuclease activity A; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity).


ensembl_gene_id: PFL_1875
symbol: sigX
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, ECF subfamily, SigX; Identified by similarity to GB:AAD34329.1; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_1876
symbol: oprF
gene_biotype: protein_coding
description:
  Outer membrane porin OprF; Identified by similarity to SP:P13794; match to protein family HMM PF00691; match to protein family HMM PF02462; match to protein family HMM PF05736.


ensembl_gene_id: PFL_1877
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: PFL_1878
symbol: rlmL
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase L; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.


ensembl_gene_id: PFL_1879
symbol: PFL_1879
gene_biotype: protein_coding
description:
  Putative CHASE domain/sensory box-containing nucleotide cyclase; Identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF03924; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_1880
symbol: dacB
gene_biotype: protein_coding
description:
  D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666.


ensembl_gene_id: PFL_1882
symbol: PFL_1882
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843.


ensembl_gene_id: PFL_1886
symbol: guaD
gene_biotype: protein_coding
description:
  Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.


ensembl_gene_id: PFL_1887
symbol: xdhC
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase accessory protein XdhC; Identified by similarity to GB:CAB41849.1; match to protein family HMM PF02625; match to protein family HMM TIGR02964.


ensembl_gene_id: PFL_1888
symbol: xdhB
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, molybdopterin binding subunit; Identified by similarity to GB:CAA04470.2; match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965.


ensembl_gene_id: PFL_1889
symbol: xdhA
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, small subunit; Identified by similarity to GB:CAA04469.1; match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963.


ensembl_gene_id: PFL_1891
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: PFL_1892
symbol: zipA
gene_biotype: protein_coding
description:
  Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.


ensembl_gene_id: PFL_1893
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: PFL_1895
symbol: PFL_1895
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:P54564; match to protein family HMM PF04229.


ensembl_gene_id: PFL_1901
symbol: aer_1
gene_biotype: protein_coding
description:
  Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_1904
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, gamma and tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: PFL_1905
symbol: PFL_1905
gene_biotype: protein_coding
description:
  TIGR00103 family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: PFL_1906
symbol: PFL_1906
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family; Identified by similarity to SP:P76113; match to protein family HMM PF00107.


ensembl_gene_id: PFL_1907
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: PFL_1908
symbol: PFL_1908
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: PFL_1909
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: PFL_1910
symbol: anr
gene_biotype: protein_coding
description:
  Transcriptional regulator Anr; Identified by similarity to SP:P23926; match to protein family HMM PF00027; match to protein family HMM PF00325.


ensembl_gene_id: PFL_1912
symbol: hemN
gene_biotype: protein_coding
description:
  Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: PFL_1914
symbol: ccoS
gene_biotype: protein_coding
description:
  Cytochrome oxidase maturation protein, cbb3-type; Identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847.


ensembl_gene_id: PFL_1915
symbol: PFL_1915
gene_biotype: protein_coding
description:
  Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.


ensembl_gene_id: PFL_1918
symbol: ccoP_1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.


ensembl_gene_id: PFL_1920
symbol: ccoO_1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, cbb3-type, subunit II; Identified by similarity to GB:AAM76065.1; match to protein family HMM PF02433; match to protein family HMM TIGR00781.


ensembl_gene_id: PFL_1921
symbol: ccoN_1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to SP:P98055; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: PFL_1930
symbol: rlmM
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.


ensembl_gene_id: PFL_1931
symbol: tusA
gene_biotype: protein_coding
description:
  Sulfurtransferase TusA; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: PFL_1932
symbol: pmpM
gene_biotype: protein_coding
description:
  Multidrug resistance protein PmpM; Identified by similarity to SP:Q9I3Y3; match to protein family HMM PF01554; match to protein family HMM TIGR00797.


ensembl_gene_id: PFL_1933
symbol: pdxB
gene_biotype: protein_coding
description:
  4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.


ensembl_gene_id: PFL_1935
symbol: PFL_1935
gene_biotype: protein_coding
description:
  ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204.


ensembl_gene_id: PFL_1937
symbol: uup
gene_biotype: protein_coding
description:
  ATP-binding cassette ATPase, Uup; Identified by similarity to SP:P43672; match to protein family HMM PF00005.


ensembl_gene_id: PFL_1940
symbol: fadB
gene_biotype: protein_coding
description:
  Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.


ensembl_gene_id: PFL_1941
symbol: fadA
gene_biotype: protein_coding
description:
  acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.


ensembl_gene_id: PFL_1942
symbol: topA_1
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: PFL_1948
symbol: sulA
gene_biotype: protein_coding
description:
  Cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division.


ensembl_gene_id: PFL_1949
symbol: lexA
gene_biotype: protein_coding
description:
  LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: PFL_1950
symbol: psrA
gene_biotype: protein_coding
description:
  Transcriptional regulator PsrA; Identified by similarity to GB:CAC17801.1; match to protein family HMM PF00440.


ensembl_gene_id: PFL_1951
symbol: nagZ
gene_biotype: protein_coding
description:
  beta-L-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.


ensembl_gene_id: PFL_1952
symbol: PFL_1952
gene_biotype: protein_coding
description:
  SNF2 family domain/helicase domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434.


ensembl_gene_id: PFL_1954
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: PFL_1955
symbol: gap_1
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: PFL_1956
symbol: citA
gene_biotype: protein_coding
description:
  Putative MFS transporter, citrate:H+ symporter CitA; Identified by similarity to SP:P07661; match to protein family HMM PF00083; match to protein family HMM PF07690.


ensembl_gene_id: PFL_1957
symbol: PFL_1957
gene_biotype: protein_coding
description:
  ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: PFL_1958
symbol: sthA
gene_biotype: protein_coding
description:
  Soluble pyridine nucleotide transhydrogenase; Conversion of NADPH, generated by peripheral catabolic pathways, to NADH, which can enter the respiratory chain for energy generation; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.


ensembl_gene_id: PFL_1961
symbol: lolC
gene_biotype: protein_coding
description:
  Lipoprotein-releasing system, transmembrane protein LolC; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212.


ensembl_gene_id: PFL_1962
symbol: lolD
gene_biotype: protein_coding
description:
  Lipoprotein-releasing system, ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.


ensembl_gene_id: PFL_1963
symbol: lolE
gene_biotype: protein_coding
description:
  Lipoprotein-releasing system, transmembrane protein LolE; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212.


ensembl_gene_id: PFL_1965
symbol: copR
gene_biotype: protein_coding
description:
  DNA-binding copper response regulator; Identified by similarity to SP:Q02540; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387.


ensembl_gene_id: PFL_1966
symbol: PFL_1966
gene_biotype: protein_coding
description:
  Copper-binding protein, plastocyanin/azurin family; Identified by match to protein family HMM PF00127.


ensembl_gene_id: PFL_1967
symbol: queF
gene_biotype: protein_coding
description:
  Queuine synthase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).


ensembl_gene_id: PFL_1974
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.


ensembl_gene_id: PFL_1975
symbol: dusA
gene_biotype: protein_coding
description:
  tRNA dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.


ensembl_gene_id: PFL_1976
symbol: PFL_1976
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.


ensembl_gene_id: PFL_1978
symbol: PFL_1978
gene_biotype: protein_coding
description:
  C-5 cytosine-specific DNA methylase family protein; Identified by match to protein family HMM PF00145.


ensembl_gene_id: PFL_1995
symbol: PFL_1995
gene_biotype: protein_coding
description:
  Portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.


ensembl_gene_id: PFL_1996
symbol: PFL_1996
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease family protein; Identified by match to protein family HMM PF00574; Belongs to the peptidase S14 family.


ensembl_gene_id: PFL_2002
symbol: PFL_2002
gene_biotype: protein_coding
description:
  Phage baseplate assembly V family protein; Identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644.


ensembl_gene_id: PFL_2006
symbol: PFL_2006
gene_biotype: protein_coding
description:
  Phage tail protein I; Identified by similarity to SP:P26701; match to protein family HMM PF09684; match to protein family HMM TIGR01634.


ensembl_gene_id: PFL_2010
symbol: PFL_2010
gene_biotype: protein_coding
description:
  Phage major tail tube protein; Identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611.


ensembl_gene_id: PFL_2021
symbol: PFL_2021
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF02586; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: PFL_2026
symbol: PFL_2026
gene_biotype: protein_coding
description:
  Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.


ensembl_gene_id: PFL_2027
symbol: PFL_2027
gene_biotype: protein_coding
description:
  Conserved domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_2028
symbol: PFL_2028
gene_biotype: protein_coding
description:
  Glycosyltransferase, group 1 family domain/glycosyl transferase, group 2 family domain protein; Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.


ensembl_gene_id: PFL_2034
symbol: PFL_2034
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P52662; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_2038
symbol: PFL_2038
gene_biotype: protein_coding
description:
  Putative N-hydroxyarylamine O-acetyltransferase; Identified by similarity to SP:Q00267; match to protein family HMM PF00797; Belongs to the arylamine N-acetyltransferase family.


ensembl_gene_id: PFL_2039
symbol: PFL_2039
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173.


ensembl_gene_id: PFL_2046
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: PFL_2047
symbol: PFL_2047
gene_biotype: protein_coding
description:
  Drug resistance MFS transporter, drug:H+ antiporter-2 family; Identified by similarity to SP:P0AEJ0; match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.


ensembl_gene_id: PFL_2049
symbol: gltX
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: PFL_2059
symbol: dusC
gene_biotype: protein_coding
description:
  tRNA-dihydrouridine synthase C; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.


ensembl_gene_id: PFL_2060
symbol: ibpA
gene_biotype: protein_coding
description:
  Small heat shock protein IbpA; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: PFL_2061
symbol: PFL_2061
gene_biotype: protein_coding
description:
  Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_2063
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: PFL_2064
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: PFL_2065
symbol: PFL_2065
gene_biotype: protein_coding
description:
  Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_2066
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.


ensembl_gene_id: PFL_2067
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: PFL_2068
symbol: PFL_2068
gene_biotype: protein_coding
description:
  Putative aspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: PFL_2071
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: PFL_2072
symbol: trpF
gene_biotype: protein_coding
description:
  N-(5'phosphoribosyl)anthranilate isomerase; Identified by match to protein family HMM PF00697; Belongs to the TrpF family.


ensembl_gene_id: PFL_2073
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: PFL_2074
symbol: folC
gene_biotype: protein_coding
description:
  Bifunctional protein FolC; Identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: PFL_2075
symbol: dedD
gene_biotype: protein_coding
description:
  Cell division protein DedD; Identified by similarity to SP:P09549; match to protein family HMM PF05036.


ensembl_gene_id: PFL_2077
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: PFL_2078
symbol: metZ
gene_biotype: protein_coding
description:
  O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: PFL_2086
symbol: prfH
gene_biotype: protein_coding
description:
  Putative peptide chain release factor H; Identified by match to protein family HMM PF00472; match to protein family HMM TIGR03072.


ensembl_gene_id: PFL_2087
symbol: PFL_2087
gene_biotype: protein_coding
description:
  Release factor H-coupled RctB family protein; Identified by match to protein family HMM PF01139; match to protein family HMM TIGR03073.


ensembl_gene_id: PFL_2090
symbol: PFL_2090
gene_biotype: protein_coding
description:
  Chitin-binding protein; Identified by similarity to GB:BAA31569.1; match to protein family HMM PF03067.


ensembl_gene_id: PFL_2091
symbol: chiC
gene_biotype: protein_coding
description:
  Chitinase; Identified by similarity to GB:AAK69491.1; similarity to GB:BAA76623.1; match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839; Belongs to the glycosyl hydrolase 18 family.


ensembl_gene_id: PFL_2095
symbol: rsmE
gene_biotype: protein_coding
description:
  Translational regulator RsmE; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).


ensembl_gene_id: PFL_2099
symbol: ansB
gene_biotype: protein_coding
description:
  Glutamin-(asparagin-)ase; Identified by similarity to SP:P10172; match to protein family HMM PF00710; match to protein family HMM TIGR00520; Belongs to the asparaginase 1 family.


ensembl_gene_id: PFL_2101
symbol: rbsB
gene_biotype: protein_coding
description:
  Ribose ABC transporter, periplasmic ribose-binding protein; Identified by similarity to SP:P02925; match to protein family HMM PF00532.


ensembl_gene_id: PFL_2102
symbol: rbsA
gene_biotype: protein_coding
description:
  Ribose ABC transporter, ATP-binding protein; Based on sequence similarity with rbsA from E. coli (SP:P04983); identified by match to protein family HMM PF00005.


ensembl_gene_id: PFL_2103
symbol: rbsC
gene_biotype: protein_coding
description:
  Ribose ABC transporter, permease protein; Identified by similarity to SP:P0AGI1; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_2104
symbol: rbsR
gene_biotype: protein_coding
description:
  Ribose operon repressor; Identified by sequence similarity with rbsR from E. coli (SP:P0ACQ0); identified by match to protein family HMM PF00356; match to protein family HMM PF00532.


ensembl_gene_id: PFL_2105
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: PFL_2107
symbol: rihA
gene_biotype: protein_coding
description:
  Pyrimidine-specific ribonucleoside hydrolase RihA; Identified by similarity to SP:P41409; match to protein family HMM PF01156; Belongs to the IUNH family.


ensembl_gene_id: PFL_2109
symbol: capA
gene_biotype: protein_coding
description:
  Cold shock protein CapA; Identified by similarity to SP:P72188; match to protein family HMM PF00313.


ensembl_gene_id: PFL_2111
symbol: thrS_1
gene_biotype: protein_coding
description:
  threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: PFL_2112
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: PFL_2113
symbol: rpmI
gene_biotype: protein_coding
description:
  Ribosomal protein L35; Identified by similarity to SP:P07085; match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: PFL_2114
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: PFL_2115
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, alpha subunit; Identified by similarity to SP:P08312; match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: PFL_2116
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, beta subunit; Identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: PFL_2117
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: PFL_2118
symbol: PFL_2118
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; Identified by similarity to SP:P75989; match to protein family HMM PF00376.


ensembl_gene_id: PFL_2123
symbol: PFL_2123
gene_biotype: protein_coding
description:
  Putative tail assembly protein K; Identified by similarity to SP:P03729; match to protein family HMM PF00877.


ensembl_gene_id: PFL_2126
symbol: PFL_2126
gene_biotype: protein_coding
description:
  Transcriptional regulator, Cro/CI family; Identified by similarity to SP:Q06553; match to protein family HMM PF00717; match to protein family HMM PF01381.


ensembl_gene_id: PFL_2127
symbol: llpA2
gene_biotype: protein_coding
description:
  Bacteriocin LlpA2; See Parret et al 2005 (PMID:16151105) for more information; identified by similarity to GB:AAM95702.1; match to protein family HMM PF01453.


ensembl_gene_id: PFL_2133
symbol: PFL_2133
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P77559; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_2138
symbol: PFL_2138
gene_biotype: protein_coding
description:
  Aminotransferase; Identified by match to protein family HMM PF00155; match to protein family HMM PF01212.


ensembl_gene_id: PFL_2141
symbol: aepX
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate mutase; Identified by similarity to GB:AAO24736.1; match to protein family HMM TIGR02320.


ensembl_gene_id: PFL_2142
symbol: PFL_2142
gene_biotype: protein_coding
description:
  Efflux transporter, outer membrane factor lipoprotein, NodT family; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.


ensembl_gene_id: PFL_2145
symbol: ofaA
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthetase OfaA; Previously identified and characterized. See Gross et al 2007 (PMID: 17254952) for more information; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_2146
symbol: ofaB
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthetase OfaB; Previously identified and characterized. See Gross et al 2007 (PMID: 17254952) for more information; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_2147
symbol: ofaC
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthetase OfaC; Previously identified and characterized. See Gross et al 2007 (PMID: 17254952) for more information; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_2148
symbol: PFL_2148
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P75830; match to protein family HMM PF00364; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_2149
symbol: macB1
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease/ATP-binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.


ensembl_gene_id: PFL_2152
symbol: PFL_2152
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03913.


ensembl_gene_id: PFL_2153
symbol: PFL_2153
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF08896; match to protein family HMM PF08898.


ensembl_gene_id: PFL_2166
symbol: PFL_2166
gene_biotype: protein_coding
description:
  3-hydroxybutyryl-CoA dehydrogenase; Identified by similarity to SP:P45856; match to protein family HMM PF00725; match to protein family HMM PF02737.


ensembl_gene_id: PFL_2168
symbol: acoR
gene_biotype: protein_coding
description:
  Acetoin catabolism regulatory protein; A sigma-54 dependent transcriptional regulator; identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954.


ensembl_gene_id: PFL_2169
symbol: acoX
gene_biotype: protein_coding
description:
  Acetoin catabolism protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: PFL_2170
symbol: acoA
gene_biotype: protein_coding
description:
  Acetoin dehydrogenase E1 component, alpha subunit; Identified by similarity to SP:P27745; match to protein family HMM PF00676.


ensembl_gene_id: PFL_2171
symbol: acoB
gene_biotype: protein_coding
description:
  Acetoin dehydrogenase E1 component, beta subunit; Identified by similarity to SP:O34591; match to protein family HMM PF02779; match to protein family HMM PF02780.


ensembl_gene_id: PFL_2172
symbol: acoC
gene_biotype: protein_coding
description:
  Acetoin dehydrogenase E2 component, dihydrolipoamide acetyltransferase; Identified by similarity to SP:Q59695; match to protein family HMM PF00364; match to protein family HMM PF00561; match to protein family HMM PF00975.


ensembl_gene_id: PFL_2173
symbol: PFL_2173
gene_biotype: protein_coding
description:
  (R,R)-butanediol dehydrogenase; Identified by similarity to GB:AAB58982.1; match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: PFL_2175
symbol: PFL_2175
gene_biotype: protein_coding
description:
  Putative citrate:proton symporter; Identified by similarity to SP:P07661; match to protein family HMM PF00083; match to protein family HMM PF07690.


ensembl_gene_id: PFL_2176
symbol: PFL_2176
gene_biotype: protein_coding
description:
  Peptidase, M20/M25/M40 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.


ensembl_gene_id: PFL_2183
symbol: arsH
gene_biotype: protein_coding
description:
  Arsenical resistance protein ArsH; Identified by match to protein family HMM PF03358; match to protein family HMM TIGR02690.


ensembl_gene_id: PFL_2184
symbol: arsC_2
gene_biotype: protein_coding
description:
  Arsenate reductase ArsC; Identified by similarity to GB:AAG05667.1; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: PFL_2185
symbol: arsB
gene_biotype: protein_coding
description:
  Arsenite efflux transporter ArsB; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.


ensembl_gene_id: PFL_2186
symbol: arsR
gene_biotype: protein_coding
description:
  Arsenic resistance transcriptional regulator; Identified by similarity to GB:AAC69642.1; match to protein family HMM PF01022.


ensembl_gene_id: PFL_2188
symbol: PFL_2188
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: PFL_2189
symbol: azoR4
gene_biotype: protein_coding
description:
  Putative FMN-dependent NADH-azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: PFL_2191
symbol: PFL_2191
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.


ensembl_gene_id: PFL_2194
symbol: PFL_2194
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52815; match to protein family HMM PF00005.


ensembl_gene_id: PFL_2198
symbol: PFL_2198
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: PFL_2199
symbol: PFL_2199
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family/SIS domain protein; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.


ensembl_gene_id: PFL_2203
symbol: pedS1
gene_biotype: protein_coding
description:
  Two-component sensor histidine kinase PedS1; Identified by similarity to GB:ABR57212.1; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_2204
symbol: pedR1
gene_biotype: protein_coding
description:
  Two-component transcriptional regulator PedR1; Identified by similarity to GB:ABR57213.1; match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: PFL_2206
symbol: pedC
gene_biotype: protein_coding
description:
  2-phenylethanol ABC efflux transporter, permease protein PedC; Identified by similarity to GB:ABR57215.1; match to protein family HMM PF01061; match to protein family HMM TIGR03861.


ensembl_gene_id: PFL_2207
symbol: pedB
gene_biotype: protein_coding
description:
  2-phenylethanol ABC efflux transporter, ATP-binding protein PedB; Identified by similarity to GB:ABR57216.1; match to protein family HMM PF00005; match to protein family HMM TIGR03864.


ensembl_gene_id: PFL_2208
symbol: pedA
gene_biotype: protein_coding
description:
  2-phenylethanol ABC efflux transporter, outer membrane protein PedA; Identified by similarity to GB:ABR57217.1; match to protein family HMM TIGR02276; match to protein family HMM TIGR03866.


ensembl_gene_id: PFL_2211
symbol: pedS2
gene_biotype: protein_coding
description:
  Two-component sensor histidine kinase PedS2; Identified by similarity to GB:ABR57219.1; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730.


ensembl_gene_id: PFL_2212
symbol: pedR2
gene_biotype: protein_coding
description:
  Two-component transcriptional regulator PedR2; Identified by similarity to GB:ABR57220.1; match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: PFL_2213
symbol: PFL_2213
gene_biotype: protein_coding
description:
  Addiction module antidote protein, CC2985 family; Identified by match to protein family HMM TIGR02606.


ensembl_gene_id: PFL_2215
symbol: pedD
gene_biotype: protein_coding
description:
  Pentapeptide repeat protein PedD; Identified by similarity to GB:ABR57221.1; match to protein family HMM PF00805.


ensembl_gene_id: PFL_2216
symbol: pedE
gene_biotype: protein_coding
description:
  Quinoprotein ethanol dehydrogenase PedE; Identified by similarity to GB:ABR57222.1; match to protein family HMM PF01011; match to protein family HMM TIGR03075.


ensembl_gene_id: PFL_2217
symbol: pedF
gene_biotype: protein_coding
description:
  Cytochrome c-550 PedF; Identified by similarity to GB:ABR57223.1; match to protein family HMM PF00034.


ensembl_gene_id: PFL_2220
symbol: PFL_2220
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase domain protein; Identified by similarity to GB:ABR57226.1; match to protein family HMM PF00753.


ensembl_gene_id: PFL_2221
symbol: pedH
gene_biotype: protein_coding
description:
  Quinoprotein ethanol dehydrogenase PedH; Identified by similarity to GB:ABR57227.1; match to protein family HMM PF01011; match to protein family HMM TIGR03075.


ensembl_gene_id: PFL_2222
symbol: pedI
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase PedI; Identified by similarity to GB:ABR57228.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_2223
symbol: pqqA_2
gene_biotype: protein_coding
description:
  Coenzyme PQQ synthesis protein A; Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis. PQQ is probably formed by cross-linking a specific glutamate to a specific tyrosine residue and excising these residues from the peptide; Belongs to the PqqA family.


ensembl_gene_id: PFL_2224
symbol: pqqB_1
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.


ensembl_gene_id: PFL_2226
symbol: PFL_2226
gene_biotype: protein_coding
description:
  Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_2237
symbol: PFL_2237
gene_biotype: protein_coding
description:
  MASE2 domain/diguanylate cyclase domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF05230; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_2238
symbol: PFL_2238
gene_biotype: protein_coding
description:
  Putative iron compound ABC transporter, iron compound-binding protein; Identified by match to protein family HMM PF01497.


ensembl_gene_id: PFL_2241
symbol: astA
gene_biotype: protein_coding
description:
  Arginine N-succinyltransferase, beta subunit; Identified by similarity to SP:P80358; match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244.


ensembl_gene_id: PFL_2242
symbol: astA-2
gene_biotype: protein_coding
description:
  Arginine N-succinyltransferase, alpha subunit; Identified by similarity to SP:P80357; match to protein family HMM PF04958; match to protein family HMM TIGR03243.


ensembl_gene_id: PFL_2245
symbol: glnA_1
gene_biotype: protein_coding
description:
  Glutamate--ammonia ligase; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.


ensembl_gene_id: PFL_2247
symbol: PFL_2247
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family/SIS domain protein; Identified by similarity to SP:P39266; match to protein family HMM PF01380; match to protein family HMM PF01418.


ensembl_gene_id: PFL_2249
symbol: cobF
gene_biotype: protein_coding
description:
  precorrin-6A synthase (deacetylating); Identified by match to protein family HMM PF00590; match to protein family HMM TIGR02434.


ensembl_gene_id: PFL_2250
symbol: ftrA
gene_biotype: protein_coding
description:
  Transcriptional activator FtrA; See Crosson et. al. 2005 (PMID: 15911751) for more information; identified by similarity to GB:AAK25329.1; match to protein family HMM PF00165; match to protein family HMM PF01965.


ensembl_gene_id: PFL_2252
symbol: PFL_2252
gene_biotype: protein_coding
description:
  Periplasmic arginine/ornithine-binding protein; Identified by similarity to GB:AAG04277.1; match to protein family HMM PF00497; match to protein family HMM TIGR01096; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: PFL_2262
symbol: mntH
gene_biotype: protein_coding
description:
  Manganese transport protein MntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.


ensembl_gene_id: PFL_2267
symbol: glcF
gene_biotype: protein_coding
description:
  Glycolate oxidase, iron-sulfur subunit; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754.


ensembl_gene_id: PFL_2268
symbol: glcE
gene_biotype: protein_coding
description:
  Glycolate oxidase, subunit GlcE; Identified by similarity to SP:P52073; match to protein family HMM PF01565.


ensembl_gene_id: PFL_2269
symbol: glcD
gene_biotype: protein_coding
description:
  Glycolate oxidase, subunit GlcD; Identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387.


ensembl_gene_id: PFL_2270
symbol: glcC
gene_biotype: protein_coding
description:
  Glc operon transcriptional activator; Identified by similarity to SP:P52072; match to protein family HMM PF00392; match to protein family HMM PF07729.


ensembl_gene_id: PFL_2273
symbol: PFL_2273
gene_biotype: protein_coding
description:
  Conserved domain protein; Identified by similarity to PIR:E83307; match to protein family HMM PF07235; match to protein family HMM TIGR03510.


ensembl_gene_id: PFL_2276
symbol: tsx
gene_biotype: protein_coding
description:
  Nucleoside-specific channel-forming protein Tsx; Identified by similarity to SP:P0A927; match to protein family HMM PF03502.


ensembl_gene_id: PFL_2279
symbol: selU
gene_biotype: protein_coding
description:
  tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.


ensembl_gene_id: PFL_2280
symbol: PFL_2280
gene_biotype: protein_coding
description:
  Permease family protein; Identified by similarity to SP:P45468; match to protein family HMM PF03773.


ensembl_gene_id: PFL_2281
symbol: PFL_2281
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; Identified by similarity to SP:Q52154; match to protein family HMM PF01047; match to protein family HMM PF01614; match to protein family HMM PF09339.


ensembl_gene_id: PFL_2282
symbol: PFL_2282
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.


ensembl_gene_id: PFL_2284
symbol: PFL_2284
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005.


ensembl_gene_id: PFL_2288
symbol: PFL_2288
gene_biotype: protein_coding
description:
  Phenazine biosynthesis protein, PhzF family; Identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654.


ensembl_gene_id: PFL_2290
symbol: hemB_1
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.


ensembl_gene_id: PFL_2291
symbol: PFL_2291
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, FecI family; Identified by similarity to SP:P23484; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_2294
symbol: PFL_2294
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:Q04778; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_2295
symbol: PFL_2295
gene_biotype: protein_coding
description:
  Oxidoreductase, short-chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: PFL_2302
symbol: rtcR
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator RtcR; Identified by similarity to SP:P38035; match to protein family HMM PF00158; match to protein family HMM PF06956; match to protein family HMM PF07728.


ensembl_gene_id: PFL_2308
symbol: rtcA
gene_biotype: protein_coding
description:
  RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.


ensembl_gene_id: PFL_2318
symbol: lysA_1
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: PFL_2321
symbol: PFL_2321
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; Identified by similarity to SP:P54810; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PFL_2322
symbol: PFL_2322
gene_biotype: protein_coding
description:
  3-oxoacid CoA-transferase, B subunit; Identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428.


ensembl_gene_id: PFL_2323
symbol: scoA
gene_biotype: protein_coding
description:
  succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A; Identified by similarity to SP:P56006; match to protein family HMM PF01144; match to protein family HMM TIGR02429.


ensembl_gene_id: PFL_2325
symbol: cobB-2
gene_biotype: protein_coding
description:
  NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.


ensembl_gene_id: PFL_2328
symbol: PFL_2328
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF05227.


ensembl_gene_id: PFL_2330
symbol: PFL_2330
gene_biotype: protein_coding
description:
  Putative membrane protein AbrB; Identified by similarity to SP:P75747; match to protein family HMM PF05145; match to protein family HMM TIGR03082.


ensembl_gene_id: PFL_2333
symbol: PFL_2333
gene_biotype: protein_coding
description:
  Putative sarcosine oxidase; Identified by similarity to SP:P23342; match to protein family HMM PF01266.


ensembl_gene_id: PFL_2336
symbol: potF3
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, periplasmic putrescine-binding protein; Identified by similarity to SP:P31133; match to protein family HMM PF01547.


ensembl_gene_id: PFL_2337
symbol: potI2
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, permease protein; Identified by similarity to SP:P0AFL1; match to protein family HMM PF00528.


ensembl_gene_id: PFL_2338
symbol: potH2
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, permease protein; Identified by similarity to SP:P31135; match to protein family HMM PF00528.


ensembl_gene_id: PFL_2339
symbol: potG2
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PFL_2340
symbol: puuD
gene_biotype: protein_coding
description:
  Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD; Identified by similarity to SP:Q3Z146; match to protein family HMM PF00117; match to protein family HMM PF07722.


ensembl_gene_id: PFL_2341
symbol: puuA
gene_biotype: protein_coding
description:
  Putative gamma-glutamylputrescine synthetase PuuA; Identified by similarity to SP:P78061; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.


ensembl_gene_id: PFL_2342
symbol: puuC
gene_biotype: protein_coding
description:
  Putative gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC; Identified by similarity to SP:P23883; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_2343
symbol: puuB
gene_biotype: protein_coding
description:
  Putative gamma-glutamylputrescine oxidoreductase PuuB; Identified by similarity to SP:P37906; match to protein family HMM PF01266.


ensembl_gene_id: PFL_2344
symbol: PFL_2344
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, HTH domain/cupin domain protein; Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.


ensembl_gene_id: PFL_2345
symbol: PFL_2345
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF08928; match to protein family HMM PF08929.


ensembl_gene_id: PFL_2354
symbol: PFL_2354
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.


ensembl_gene_id: PFL_2357
symbol: PFL_2357
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.


ensembl_gene_id: PFL_2361
symbol: PFL_2361
gene_biotype: protein_coding
description:
  Phosphotransferase family/peptidase, M23 family/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551; match to protein family HMM PF01636.


ensembl_gene_id: PFL_2363
symbol: PFL_2363
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_2365
symbol: PFL_2365
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane heme receptor; Transducer; identified by match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: PFL_2382
symbol: PFL_2382
gene_biotype: protein_coding
description:
  Ribonuclease inhibitor Barstar; Identified by similarity to SP:P11540; match to protein family HMM PF01337.


ensembl_gene_id: PFL_2391
symbol: PFL_2391
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferripyoverdine receptor; Similar to FpvA but not in pyoverdine gene clusters Transducer; identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_2402
symbol: yfcF
gene_biotype: protein_coding
description:
  Glutathione S-transferase YfcF; Identified by similarity to SP:P77544; match to protein family HMM PF02798.


ensembl_gene_id: PFL_2404
symbol: metE
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: PFL_2406
symbol: PFL_2406
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family/aminotransferase, class I/II family protein; Identified by match to protein family HMM PF00155; match to protein family HMM PF00266; match to protein family HMM PF00392; match to protein family HMM PF01053.


ensembl_gene_id: PFL_2420
symbol: PFL_2420
gene_biotype: protein_coding
description:
  D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: PFL_2423
symbol: PFL_2423
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.


ensembl_gene_id: PFL_2424
symbol: PFL_2424
gene_biotype: protein_coding
description:
  Putative tautomerase; Identified by match to protein family HMM PF01361; Belongs to the 4-oxalocrotonate tautomerase family.


ensembl_gene_id: PFL_2427
symbol: mqo_1
gene_biotype: protein_coding
description:
  Malate:quinone-oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF06039; match to protein family HMM TIGR01320.


ensembl_gene_id: PFL_2428
symbol: PFL_2428
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family; Identified by similarity to GB:AAO57055.1; match to protein family HMM PF00583.


ensembl_gene_id: PFL_2429
symbol: PFL_2429
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279.


ensembl_gene_id: PFL_2432
symbol: lhgO
gene_biotype: protein_coding
description:
  L-2-hydroxyglutarate oxidase; Identified by similarity to SP:P37339; match to protein family HMM PF01266.


ensembl_gene_id: PFL_2441
symbol: PFL_2441
gene_biotype: protein_coding
description:
  Quinone oxidoreductase, YhdH/YhfP family; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823.


ensembl_gene_id: PFL_2450
symbol: PFL_2450
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF07992.


ensembl_gene_id: PFL_2451
symbol: PFL_2451
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:P0ADR8; match to protein family HMM PF03641.


ensembl_gene_id: PFL_2453
symbol: cobB-3
gene_biotype: protein_coding
description:
  NAD-dependent deacetylase; Identified by similarity to SP:Q9I4L0; match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily.


ensembl_gene_id: PFL_2455
symbol: PFL_2455
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase/PEP mutase superfamily. Oxaloacetate decarboxylase family.


ensembl_gene_id: PFL_2458
symbol: PFL_2458
gene_biotype: protein_coding
description:
  PAS fold domain/diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_2461
symbol: argD
gene_biotype: protein_coding
description:
  Acetylornithine transaminase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: PFL_2465
symbol: PFL_2465
gene_biotype: protein_coding
description:
  Cytidyltransferase domain protein; Identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125.


ensembl_gene_id: PFL_2473
symbol: glnA_3
gene_biotype: protein_coding
description:
  Glutamine synthetase, catalytic domain protein; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.


ensembl_gene_id: PFL_2474
symbol: PFL_2474
gene_biotype: protein_coding
description:
  Isoprenylcysteine carboxyl methyltransferase family protein; Identified by similarity to SP:P87014; match to protein family HMM PF04140.


ensembl_gene_id: PFL_2476
symbol: PFL_2476
gene_biotype: protein_coding
description:
  Isochorismatase family protein; Identified by similarity to SP:P21367; match to protein family HMM PF00857.


ensembl_gene_id: PFL_2480
symbol: polB
gene_biotype: protein_coding
description:
  DNA polymerase II; Identified by similarity to SP:P21189; match to protein family HMM PF00136; match to protein family HMM PF03104.


ensembl_gene_id: PFL_2483
symbol: aprX
gene_biotype: protein_coding
description:
  Metallopeptidase AprX; Identified by similarity to GB:ABY65932.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.


ensembl_gene_id: PFL_2487
symbol: PFL_2487
gene_biotype: protein_coding
description:
  Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.


ensembl_gene_id: PFL_2495
symbol: PFL_2495
gene_biotype: protein_coding
description:
  Glutathione-regulated potassium-efflux system protein; Identified by similarity to SP:P03819; similarity to SP:P45522; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: PFL_2498
symbol: PFL_2498
gene_biotype: protein_coding
description:
  Aerobic C4-dicarboxylate transport protein; Identified by match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: PFL_2499
symbol: PFL_2499
gene_biotype: protein_coding
description:
  Identified by similarity to SP:P42308; match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; match to protein family HMM TIGR00784.


ensembl_gene_id: PFL_2507
symbol: PFL_2507
gene_biotype: protein_coding
description:
  Transcriptional repressor, FrmR family; Identified by similarity to SP:P0AAP3; match to protein family HMM PF02583.


ensembl_gene_id: PFL_2508
symbol: PFL_2508
gene_biotype: protein_coding
description:
  Cation efflux protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.


ensembl_gene_id: PFL_2516
symbol: PFL_2516
gene_biotype: protein_coding
description:
  Sensory box histidine kinase/response regulator; Identified by similarity to SP:P16575; match to protein family HMM PF00072; match to protein family HMM PF00497; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_2524
symbol: PFL_2524
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03916.


ensembl_gene_id: PFL_2527
symbol: PFL_2527
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferripyoverdine receptor; Transducer; identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_2528
symbol: pupR
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein PupR; Identified by similarity to PIR:S46356; match to protein family HMM PF04773.


ensembl_gene_id: PFL_2529
symbol: pupI
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor PupI; Identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_2530
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain-amino-acid transaminase; Identified by match to protein family HMM PF01063; match to protein family HMM TIGR01123.


ensembl_gene_id: PFL_2531
symbol: bkdC
gene_biotype: protein_coding
description:
  2-oxoisovalerate dehydrogenase E3 component, dihydrolipoyl dehydrogenase; Identified by similarity to SP:P09063; match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: PFL_2532
symbol: bkdB
gene_biotype: protein_coding
description:
  2-oxoisovalerate dehydrogenase E2 component, dihydrolipoamide acyltransferase; Identified by similarity to SP:P09062; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817.


ensembl_gene_id: PFL_2533
symbol: bkdA2
gene_biotype: protein_coding
description:
  2-oxoisovalerate dehydrogenase E1 component, beta subunit; Identified by similarity to SP:P09061; match to protein family HMM PF02779; match to protein family HMM PF02780.


ensembl_gene_id: PFL_2534
symbol: bkdA1
gene_biotype: protein_coding
description:
  2-oxoisovalerate dehydrogenase E1 component, alpha subunit; Identified by similarity to SP:P09060; match to protein family HMM PF00676.


ensembl_gene_id: PFL_2535
symbol: bkdR
gene_biotype: protein_coding
description:
  Transcriptional regulator BkdR; Identified by similarity to SP:P42179; match to protein family HMM PF01037.


ensembl_gene_id: PFL_2536
symbol: PFL_2536
gene_biotype: protein_coding
description:
  HDIG domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277.


ensembl_gene_id: PFL_2538
symbol: PFL_2538
gene_biotype: protein_coding
description:
  Transporter, DASS family; Identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785.


ensembl_gene_id: PFL_2539
symbol: dapF_1
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: PFL_2546
symbol: PFL_2546
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037.


ensembl_gene_id: PFL_2547
symbol: PFL_2547
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.


ensembl_gene_id: PFL_2548
symbol: hydA
gene_biotype: protein_coding
description:
  Dihydropyrimidinase; Identified by similarity to SP:Q59699; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.


ensembl_gene_id: PFL_2550
symbol: PFL_2550
gene_biotype: protein_coding
description:
  N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01879.


ensembl_gene_id: PFL_2552
symbol: PFL_2552
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR01728.


ensembl_gene_id: PFL_2554
symbol: PFL_2554
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069.


ensembl_gene_id: PFL_2558
symbol: PFL_2558
gene_biotype: protein_coding
description:
  RND transporter, heavy metal efflux (HME) family, permease protein; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PFL_2566
symbol: PFL_2566
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator; Identified by similarity to GB:AAF18103.1; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448.


ensembl_gene_id: PFL_2568
symbol: PFL_2568
gene_biotype: protein_coding
description:
  Sensory box transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF00989; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_2577
symbol: hcnA
gene_biotype: protein_coding
description:
  Hydrogen cyanide synthase HcnA; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAF21028.1; match to protein family HMM PF00111.


ensembl_gene_id: PFL_2578
symbol: hcnB
gene_biotype: protein_coding
description:
  Hydrogen cyanide synthase HcnB; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAF21029.2; match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992.


ensembl_gene_id: PFL_2579
symbol: hcnC
gene_biotype: protein_coding
description:
  Hydrogen cyanide synthase HcnC; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAC38596.1; match to protein family HMM PF01266.


ensembl_gene_id: PFL_2588
symbol: iolB
gene_biotype: protein_coding
description:
  Myo-inositol catabolism protein IolB; Identified by similarity to SP:P42413; match to protein family HMM PF06845.


ensembl_gene_id: PFL_2589
symbol: iolL
gene_biotype: protein_coding
description:
  Putative inosose isomerase; Identified by similarity to SP:P42419; match to protein family HMM PF01261.


ensembl_gene_id: PFL_2590
symbol: iolD
gene_biotype: protein_coding
description:
  3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Identified by similarity to SP:P42415; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.


ensembl_gene_id: PFL_2591
symbol: iolG
gene_biotype: protein_coding
description:
  Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).


ensembl_gene_id: PFL_2593
symbol: PFL_2593
gene_biotype: protein_coding
description:
  Putative ribose ABC transporter, periplasmic ribose-binding protein; Identified by match to protein family HMM PF00532.


ensembl_gene_id: PFL_2594
symbol: PFL_2594
gene_biotype: protein_coding
description:
  Ribose ABC transporter, ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.


ensembl_gene_id: PFL_2595
symbol: PFL_2595
gene_biotype: protein_coding
description:
  Ribose ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_2606
symbol: phaG-2
gene_biotype: protein_coding
description:
  Putative K(+)/H(+) antiporter subunit G; Identified by similarity to SP:Q9Z3Q3; match to protein family HMM PF03334; match to protein family HMM TIGR01300.


ensembl_gene_id: PFL_2607
symbol: phaF-2
gene_biotype: protein_coding
description:
  Putative K(+)/H(+) antiporter subunit F; Identified by similarity to SP:Q52983; match to protein family HMM PF04066.


ensembl_gene_id: PFL_2608
symbol: phaE
gene_biotype: protein_coding
description:
  Putative K(+)/H(+) antiporter subunit E; Identified by similarity to SP:Q52982; match to protein family HMM PF01899.


ensembl_gene_id: PFL_2609
symbol: phaD-2
gene_biotype: protein_coding
description:
  Putative K(+)/H(+) antiporter subunit D; Identified by similarity to SP:Q52981; match to protein family HMM PF00361.


ensembl_gene_id: PFL_2610
symbol: phaC-2
gene_biotype: protein_coding
description:
  Putative K(+)/H(+) antiporter subunit C; Identified by similarity to SP:Q52980; match to protein family HMM PF00420.


ensembl_gene_id: PFL_2611
symbol: phaAB
gene_biotype: protein_coding
description:
  Putative K(+)/H(+) antiporter subunit A/B; Identified by similarity to SP:Q52978; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM PF04039.


ensembl_gene_id: PFL_2615
symbol: PFL_2615
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF02771; match to protein family HMM PF08028; match to protein family HMM TIGR04022.


ensembl_gene_id: PFL_2619
symbol: PFL_2619
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: PFL_2620
symbol: PFL_2620
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_2622
symbol: PFL_2622
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein.


ensembl_gene_id: PFL_2625
symbol: PFL_2625
gene_biotype: protein_coding
description:
  Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.


ensembl_gene_id: PFL_2628
symbol: PFL_2628
gene_biotype: protein_coding
description:
  D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; match to protein family HMM PF03446; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: PFL_2631
symbol: PFL_2631
gene_biotype: protein_coding
description:
  Identified by similarity to SP:P0AAD6; match to protein family HMM PF01490; match to protein family HMM PF03222.


ensembl_gene_id: PFL_2633
symbol: acnB
gene_biotype: protein_coding
description:
  Aconitate hydratase 2; Identified by match to protein family HMM PF00330; match to protein family HMM PF06434; match to protein family HMM TIGR00117; Belongs to the aconitase/IPM isomerase family.


ensembl_gene_id: PFL_2636
symbol: miaE
gene_biotype: protein_coding
description:
  tRNA-(ms[2]io[6]A)-hydroxylase; Identified by similarity to SP:Q08015; match to protein family HMM PF06175.


ensembl_gene_id: PFL_2637
symbol: PFL_2637
gene_biotype: protein_coding
description:
  Putative transcriptional regulatory protein RstA; Identified by similarity to SP:P52108; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_2638
symbol: PFL_2638
gene_biotype: protein_coding
description:
  Putative sensor protein RstB; Identified by similarity to SP:P18392; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_2642
symbol: mntP
gene_biotype: protein_coding
description:
  Putative membrane protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.


ensembl_gene_id: PFL_2648
symbol: PFL_2648
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: PFL_2651
symbol: PFL_2651
gene_biotype: protein_coding
description:
  HpcH/HpaI aldolase/citrate lyase family protein; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: PFL_2653
symbol: dmpI
gene_biotype: protein_coding
description:
  4-oxalocrotonate tautomerase family enzyme; Identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; Belongs to the 4-oxalocrotonate tautomerase family.


ensembl_gene_id: PFL_2656
symbol: PFL_2656
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, periplasmic putrescine-binding protein, PotF family; Identified by similarity to SP:P31133; match to protein family HMM PF01547.


ensembl_gene_id: PFL_2658
symbol: PFL_2658
gene_biotype: protein_coding
description:
  TRAP transporter solute receptor, DctP family; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.


ensembl_gene_id: PFL_2660
symbol: PFL_2660
gene_biotype: protein_coding
description:
  TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.


ensembl_gene_id: PFL_2661
symbol: mag1
gene_biotype: protein_coding
description:
  DNA-3-methyladenine glycosylase; Identified by similarity to SP:Q92383; match to protein family HMM PF00730.


ensembl_gene_id: PFL_2663
symbol: pfeA
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferric enterobactin receptor; Receptor; identified by similarity to SP:Q05098; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_2664
symbol: pfeS
gene_biotype: protein_coding
description:
  Sensor protein PfeS; Identified by similarity to SP:Q04804; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_2665
symbol: pfeR
gene_biotype: protein_coding
description:
  Transcriptional activator PfeR; Identified by similarity to SP:Q04803; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_2685
symbol: PFL_2685
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAB53166.1; match to protein family HMM PF04303.


ensembl_gene_id: PFL_2690
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: PFL_2698
symbol: PFL_2698
gene_biotype: protein_coding
description:
  IS66 family transposase protein; Identified by similarity to GB:AAN70014.1; match to protein family HMM PF05717.


ensembl_gene_id: PFL_2703
symbol: PFL_2703
gene_biotype: protein_coding
description:
  Oxidoreductase, FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992.


ensembl_gene_id: PFL_2704
symbol: PFL_2704
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein, PotD/PotF family; Identified by match to protein family HMM PF01547.


ensembl_gene_id: PFL_2709
symbol: PFL_2709
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.


ensembl_gene_id: PFL_2711
symbol: PFL_2711
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: PFL_2712
symbol: acdA_1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase; Identified by similarity to SP:P45867; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: PFL_2714
symbol: PFL_2714
gene_biotype: protein_coding
description:
  Putative acetolactate synthase, large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.


ensembl_gene_id: PFL_2715
symbol: aruH
gene_biotype: protein_coding
description:
  Arginine/pyruvate transaminase AruH; Identified by similarity to GB:AAG08361.1; match to protein family HMM PF00155; match to protein family HMM PF01212.


ensembl_gene_id: PFL_2718
symbol: PFL_2718
gene_biotype: protein_coding
description:
  MFS transporter, anion:cation symporter (ACS) family; Identified by match to protein family HMM PF07690.


ensembl_gene_id: PFL_2719
symbol: kdgK_1
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxygluconokinase; Identified by similarity to SP:P50845; match to protein family HMM PF00294.


ensembl_gene_id: PFL_2721
symbol: PFL_2721
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; Identified by similarity to GB:AAC26482.1; match to protein family HMM PF00356; match to protein family HMM PF00532.


ensembl_gene_id: PFL_2723
symbol: PFL_2723
gene_biotype: protein_coding
description:
  Putative choline ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR03414.


ensembl_gene_id: PFL_2726
symbol: PFL_2726
gene_biotype: protein_coding
description:
  Membrane protein of unknown function, DUF1345 family; Identified by match to protein family HMM PF07077.


ensembl_gene_id: PFL_2727
symbol: PFL_2727
gene_biotype: protein_coding
description:
  Outer membrane autotransporter barrel domain protein; Identified by match to protein family HMM PF03797; match to protein family HMM TIGR02913.


ensembl_gene_id: PFL_2728
symbol: PFL_2728
gene_biotype: protein_coding
description:
  Glutathione S-transferase domain protein; Identified by match to protein family HMM PF00462; match to protein family HMM PF02798.


ensembl_gene_id: PFL_2729
symbol: sbcC
gene_biotype: protein_coding
description:
  Exonuclease SbcCD, C subunit; Identified by similarity to SP:P13458; match to protein family HMM PF02463.


ensembl_gene_id: PFL_2730
symbol: sbcD
gene_biotype: protein_coding
description:
  Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: PFL_2732
symbol: PFL_2732
gene_biotype: protein_coding
description:
  Identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378.


ensembl_gene_id: PFL_2739
symbol: PFL_2739
gene_biotype: protein_coding
description:
  ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.


ensembl_gene_id: PFL_2745
symbol: PFL_2745
gene_biotype: protein_coding
description:
  Secretin and TonB N terminus short domain protein; Identified by match to protein family HMM PF07660.


ensembl_gene_id: PFL_2746
symbol: PFL_2746
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_2748
symbol: PFL_2748
gene_biotype: protein_coding
description:
  Putative general secretion pathway protein J; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.


ensembl_gene_id: PFL_2749
symbol: gspH
gene_biotype: protein_coding
description:
  General secretion pathway protein H; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532.


ensembl_gene_id: PFL_2751
symbol: gspI
gene_biotype: protein_coding
description:
  General secretion pathway protein I; Identified by similarity to GB:AAD05179.1; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532.


ensembl_gene_id: PFL_2752
symbol: gspG
gene_biotype: protein_coding
description:
  General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.


ensembl_gene_id: PFL_2754
symbol: gspL
gene_biotype: protein_coding
description:
  General secretion pathway protein L; Identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709.


ensembl_gene_id: PFL_2756
symbol: gspD
gene_biotype: protein_coding
description:
  General secretion pathway protein D; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517.


ensembl_gene_id: PFL_2757
symbol: gspE
gene_biotype: protein_coding
description:
  General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.


ensembl_gene_id: PFL_2758
symbol: gspF
gene_biotype: protein_coding
description:
  General secretion pathway protein F; Identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120.


ensembl_gene_id: PFL_2759
symbol: PFL_2759
gene_biotype: protein_coding
description:
  Alkaline phosphatase L; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: PFL_2767
symbol: PFL_2767
gene_biotype: protein_coding
description:
  FAD linked oxidase domain protein; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.


ensembl_gene_id: PFL_2769
symbol: PFL_2769
gene_biotype: protein_coding
description:
  Carbohydrate kinase, FGGY family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.


ensembl_gene_id: PFL_2783
symbol: PFL_2783
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF02566; match to protein family HMM PF02624; match to protein family HMM TIGR00702; match to protein family HMM TIGR03549.


ensembl_gene_id: PFL_2784
symbol: pltM
gene_biotype: protein_coding
description:
  Halogenase PltM; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999); identified by match to protein family HMM PF01266; match to protein family HMM PF04820.


ensembl_gene_id: PFL_2785
symbol: pltR
gene_biotype: protein_coding
description:
  Transcriptional regulator PltR; Identified by similarity to GB:AAQ90169.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_2786
symbol: pltL
gene_biotype: protein_coding
description:
  Peptidyl carrier protein PltL; Previously identified and sequenced(PMID: 10094695 Nowak-Thompson et al. 1999 PMID: 11880032 Thomas et al. 2002).


ensembl_gene_id: PFL_2787
symbol: pltA
gene_biotype: protein_coding
description:
  FADH2-dependent halogenase PltA; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999, PMID: 16162666 Dorrestein et al. 2005); identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820.


ensembl_gene_id: PFL_2788
symbol: pltB
gene_biotype: protein_coding
description:
  Polyketide synthase PltB; Previously identified and sequenced (PMID: 9434161 Nowak-Thompson et al. 1997); identified by similarity to GB:AAQ90173.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.


ensembl_gene_id: PFL_2789
symbol: pltC
gene_biotype: protein_coding
description:
  Polyketide synthase PltC; Previously identified and sequenced (PMID: 9434161 Nowak-Thompson et al. 1997); identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF08659.


ensembl_gene_id: PFL_2790
symbol: pltD
gene_biotype: protein_coding
description:
  Putative halogenase PltD; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999).


ensembl_gene_id: PFL_2791
symbol: pltE
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase PltE; Involved in the biosynthesis of pyoluteorin. Catalyzes the desaturation of the L-prolyl-[PltL] to yield 1H-pyrrole-2-carbonyl- [PltL].


ensembl_gene_id: PFL_2792
symbol: pltF
gene_biotype: protein_coding
description:
  L-prolyl-AMP Ligase PltF; Involved in the biosynthesis of pyoluteorin. Catalyzes the conversion of L-proline to L-prolyl-AMP and the transfer of the L- prolyl group to acyl carrier protein PltL. Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: PFL_2793
symbol: pltG
gene_biotype: protein_coding
description:
  Thioesterase PltG; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999); identified by match to protein family HMM PF00975.


ensembl_gene_id: PFL_2794
symbol: pltZ
gene_biotype: protein_coding
description:
  Transcriptional regulator PltZ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005); identified by similarity to GB:AAQ90179.1; match to protein family HMM PF00440; match to protein family HMM PF09209.


ensembl_gene_id: PFL_2795
symbol: pltI
gene_biotype: protein_coding
description:
  Putative membrane fusion protein; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) called pltH in Pseudomonas sp. M18 (PMID 16269724); identified by similarity to GB:AAY59066.1; match to protein family HMM PF00529.


ensembl_gene_id: PFL_2796
symbol: pltJ
gene_biotype: protein_coding
description:
  ABC transporter, ATP binding/permease protein PltJ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) called pltI in Pseudomonas sp. M18 (PMID: 16581203); identified by similarity to GB:AAY59067.1; match to protein family HMM PF00005.


ensembl_gene_id: PFL_2797
symbol: pltK
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding/permease protein PltK; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) Called PltJ in Pseudomonas sp. M18 (PMID 16581203); identified by similarity to GB:AAY59068.1; match to protein family HMM PF01061.


ensembl_gene_id: PFL_2798
symbol: pltN
gene_biotype: protein_coding
description:
  ABC transporter, permease protein PltN; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) Called pltK in Pseudomonas sp. M18 (PMID 16581203); identified by similarity to GB:AAY59069.1; match to protein family HMM PF01061.


ensembl_gene_id: PFL_2799
symbol: pltO
gene_biotype: protein_coding
description:
  Putative multidrug efflux MFS outer membrane protein, PltO; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) Called pltN in Pseudomonas sp. M18 (PMID 16581203); identified by similarity to GB:AAY59070.1; match to protein family HMM PF02321; match to protein family HMM TIGR01845.


ensembl_gene_id: PFL_2800
symbol: pltP
gene_biotype: protein_coding
description:
  Efflux protein, LysE family; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) Called pltO in Pseudomonas sp. M18 (PMID 16581203).


ensembl_gene_id: PFL_2803
symbol: PFL_2803
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase GroES-like domain/oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: PFL_2805
symbol: PFL_2805
gene_biotype: protein_coding
description:
  Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_2806
symbol: nemA
gene_biotype: protein_coding
description:
  N-ethylmaleimide reductase; Identified by similarity to SP:P77258; match to protein family HMM PF00724.


ensembl_gene_id: PFL_2811
symbol: PFL_2811
gene_biotype: protein_coding
description:
  Periplasmic putrescine-binding protein; Identified by similarity to SP:P31133; match to protein family HMM PF01547.


ensembl_gene_id: PFL_2812
symbol: PFL_2812
gene_biotype: protein_coding
description:
  Type VI secretion system Vgr family protein; Identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361.


ensembl_gene_id: PFL_2820
symbol: PFL_2820
gene_biotype: protein_coding
description:
  Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF08479.


ensembl_gene_id: PFL_2827
symbol: PFL_2827
gene_biotype: protein_coding
description:
  PpiC-type peptidyl-prolyl cis-trans isomerase domain protein; Identified by match to protein family HMM PF00639.


ensembl_gene_id: PFL_2830
symbol: PFL_2830
gene_biotype: protein_coding
description:
  Aspartate racemase; Identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; Belongs to the aspartate/glutamate racemases family.


ensembl_gene_id: PFL_2834
symbol: ccoN_3
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to GB:AAC72071.1; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: PFL_2835
symbol: cysI_1
gene_biotype: protein_coding
description:
  Sulfite reductase (NADPH) hemoprotein, beta-component; Identified by similarity to GB:AAC46385.1; match to protein family HMM PF01077; match to protein family HMM PF03460.


ensembl_gene_id: PFL_2837
symbol: PFL_2837
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; match to protein family HMM PF09699; match to protein family HMM TIGR01905.


ensembl_gene_id: PFL_2845
symbol: PFL_2845
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF00515; match to protein family HMM PF07719.


ensembl_gene_id: PFL_2848
symbol: PFL_2848
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:CAE33222.1; match to protein family HMM PF01882.


ensembl_gene_id: PFL_2853
symbol: PFL_2853
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC47924.1; match to protein family HMM PF06742; match to protein family HMM PF06863.


ensembl_gene_id: PFL_2854
symbol: PFL_2854
gene_biotype: protein_coding
description:
  Putative lipoprotein; Identified by match to protein family HMM PF06742; match to protein family HMM PF06863.


ensembl_gene_id: PFL_2858
symbol: tpx
gene_biotype: protein_coding
description:
  Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.


ensembl_gene_id: PFL_2859
symbol: mdtA
gene_biotype: protein_coding
description:
  Multidrug RND efflux transporter, membrane fusion protein MdtA; Identified by similarity to SP:P76397; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_2860
symbol: mdtB
gene_biotype: protein_coding
description:
  Multidrug RND efflux transporter, permease protein MdtB; Identified by similarity to GB:BAC06608.1; match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PFL_2861
symbol: mdtC
gene_biotype: protein_coding
description:
  Multidrug RND efflux transporter, permease protein MdtC; Identified by similarity to GB:BAC06609.1; match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PFL_2869
symbol: ccoG_2
gene_biotype: protein_coding
description:
  Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745.


ensembl_gene_id: PFL_2872
symbol: glgE
gene_biotype: protein_coding
description:
  Alpha-amylase family protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.


ensembl_gene_id: PFL_2873
symbol: PFL_2873
gene_biotype: protein_coding
description:
  Putative trehalose synthase/maltokinase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457.


ensembl_gene_id: PFL_2874
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: PFL_2879
symbol: PFL_2879
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_2882
symbol: glgX
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme GlgX; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: PFL_2884
symbol: treY
gene_biotype: protein_coding
description:
  (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401.


ensembl_gene_id: PFL_2885
symbol: malQ
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.


ensembl_gene_id: PFL_2886
symbol: treZ
gene_biotype: protein_coding
description:
  4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402.


ensembl_gene_id: PFL_2888
symbol: PFL_2888
gene_biotype: protein_coding
description:
  D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: PFL_2892
symbol: copB
gene_biotype: protein_coding
description:
  Copper resistance protein B; Identified by similarity to SP:P12375; match to protein family HMM PF05275.


ensembl_gene_id: PFL_2893
symbol: copA
gene_biotype: protein_coding
description:
  Copper resistance protein A; Identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480.


ensembl_gene_id: PFL_2902
symbol: pvdQ
gene_biotype: protein_coding
description:
  Acyl-homoserine lactone acylase PvdQ; Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length) (By similarity).


ensembl_gene_id: PFL_2903
symbol: fpvR
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein FpvR; Identified by similarity to GB:AAG05776.1; match to protein family HMM PF04773.


ensembl_gene_id: PFL_2909
symbol: PFL_2909
gene_biotype: protein_coding
description:
  Nitrilase family protein; Identified by similarity to SP:P46010; match to protein family HMM PF00795.


ensembl_gene_id: PFL_2912
symbol: PFL_2912
gene_biotype: protein_coding
description:
  Putative betaine-aldehyde dehydrogenase; Identified by similarity to SP:P17202; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_2917
symbol: PFL_2917
gene_biotype: protein_coding
description:
  Oxidoreductase membrane protein; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01794; match to protein family HMM PF08022.


ensembl_gene_id: PFL_2918
symbol: PFL_2918
gene_biotype: protein_coding
description:
  Monooxygenase, SsuD family; Identified by similarity to SP:Q87ZG3; match to protein family HMM PF00296.


ensembl_gene_id: PFL_2921
symbol: PFL_2921
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_2922
symbol: PFL_2922
gene_biotype: protein_coding
description:
  Monooxygenase, SsuD family; Identified by similarity to SP:O85764; match to protein family HMM PF00296.


ensembl_gene_id: PFL_2926
symbol: PFL_2926
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:P17899; match to protein family HMM PF00158; match to protein family HMM PF07728.


ensembl_gene_id: PFL_2932
symbol: PFL_2932
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase; Identified by similarity to GB:AAL79772.1; match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_2934
symbol: PFL_2934
gene_biotype: protein_coding
description:
  Putative lactone-specific esterase; Identified by similarity to GB:AAC36352.1; match to protein family HMM PF00561; match to protein family HMM PF07819.


ensembl_gene_id: PFL_2939
symbol: fadE-2
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase; Identified by similarity to SP:Q8ZRJ7; match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028; match to protein family HMM PF09317.


ensembl_gene_id: PFL_2943
symbol: fadD_1
gene_biotype: protein_coding
description:
  long-chain-fatty-acid--CoA ligase; Identified by similarity to SP:P69451; match to protein family HMM PF00501.


ensembl_gene_id: PFL_2951
symbol: PFL_2951
gene_biotype: protein_coding
description:
  Periplasmic putrescine-binding protein; Identified by similarity to GB:AAK15488.1; match to protein family HMM PF01547.


ensembl_gene_id: PFL_2954
symbol: PFL_2954
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.


ensembl_gene_id: PFL_2955
symbol: PFL_2955
gene_biotype: protein_coding
description:
  DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: PFL_2958
symbol: PFL_2958
gene_biotype: protein_coding
description:
  Peptidase M23/LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.


ensembl_gene_id: PFL_2965
symbol: hsdM
gene_biotype: protein_coding
description:
  Type I restriction-modification system, M subunit; Identified by similarity to SP:P08957; match to protein family HMM PF02384.


ensembl_gene_id: PFL_2971
symbol: PFL_2971
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993.


ensembl_gene_id: PFL_2973
symbol: pelB
gene_biotype: protein_coding
description:
  Biofilm formation protein PelB; Identified by similarity to GB:AAG06451.1; match to protein family HMM PF07719.


ensembl_gene_id: PFL_2974
symbol: pelC
gene_biotype: protein_coding
description:
  Putative polysaccharide auxiliary transport protein PelC; Identified by similarity to GB:AAG06450.1.


ensembl_gene_id: PFL_2975
symbol: pelD
gene_biotype: protein_coding
description:
  Putative polysaccharide auxiliary transport protein PelD; Identified by similarity to GB:AAG06449.1.


ensembl_gene_id: PFL_2976
symbol: pelE
gene_biotype: protein_coding
description:
  Putative polysaccharide auxiliary transport protein PelE; Identified by similarity to GB:AAG06448.1.


ensembl_gene_id: PFL_2977
symbol: pelF
gene_biotype: protein_coding
description:
  Putative glycosyltransferase PelF; Identified by similarity to GB:AAG06447.1; match to protein family HMM PF00534.


ensembl_gene_id: PFL_2980
symbol: fitA
gene_biotype: protein_coding
description:
  Type I secretion system ATPase FitA; Identified by similarity to GB:ABY91227.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.


ensembl_gene_id: PFL_2981
symbol: fitB
gene_biotype: protein_coding
description:
  Type I secretion membrane fusion protein FitB; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91228.1; match to protein family HMM PF00529; match to protein family HMM TIGR01843.


ensembl_gene_id: PFL_2982
symbol: fitC
gene_biotype: protein_coding
description:
  Type I secretion system ATPase FitC; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91229.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.


ensembl_gene_id: PFL_2983
symbol: fitD
gene_biotype: protein_coding
description:
  Cytotoxin FitD; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91230.1.


ensembl_gene_id: PFL_2984
symbol: fitE
gene_biotype: protein_coding
description:
  Type I secretion outer membrane protein FitE; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91231.1; match to protein family HMM PF02321; match to protein family HMM TIGR01844.


ensembl_gene_id: PFL_2985
symbol: fitF
gene_biotype: protein_coding
description:
  Sensory box sensor histidine kinase/response regulator FitF; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91232.1; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_2986
symbol: fitG
gene_biotype: protein_coding
description:
  Transcriptional regulator FitG; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91233.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_2987
symbol: fitH
gene_biotype: protein_coding
description:
  Response regulator FitH; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91234.1; match to protein family HMM PF00072.


ensembl_gene_id: PFL_2989
symbol: rzxB
gene_biotype: protein_coding
description:
  Polyketide synthase/nonribosomal peptide synthetase hybrid RzxB; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF02801; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08659; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_2990
symbol: rzxC
gene_biotype: protein_coding
description:
  Polyketide synthase RzxC; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08659.


ensembl_gene_id: PFL_2991
symbol: rzxD
gene_biotype: protein_coding
description:
  Polyketide synthase RzxD; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08659.


ensembl_gene_id: PFL_2992
symbol: rzxH
gene_biotype: protein_coding
description:
  Cytochrome P450 monooxygenase; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.


ensembl_gene_id: PFL_2993
symbol: rzxE
gene_biotype: protein_coding
description:
  Polyketide synthase RzxE; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801; match to protein family HMM PF08659.


ensembl_gene_id: PFL_2994
symbol: rzxF
gene_biotype: protein_coding
description:
  Polyketide synthase RzxF; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM PF08659.


ensembl_gene_id: PFL_2995
symbol: rzxI
gene_biotype: protein_coding
description:
  S-adenosylmethionine-dependent methyltransferase; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by similarity to GB:AAF05995.1; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_2996
symbol: rzxG
gene_biotype: protein_coding
description:
  Acyl transferase; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.


ensembl_gene_id: PFL_2997
symbol: rzxA
gene_biotype: protein_coding
description:
  Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415.


ensembl_gene_id: PFL_3004
symbol: PFL_3004
gene_biotype: protein_coding
description:
  Type VI secretion system Vgr family protein; Identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361.


ensembl_gene_id: PFL_3005
symbol: sulP
gene_biotype: protein_coding
description:
  Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.


ensembl_gene_id: PFL_3013
symbol: PFL_3013
gene_biotype: protein_coding
description:
  DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: PFL_3016
symbol: PFL_3016
gene_biotype: protein_coding
description:
  Helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF09369.


ensembl_gene_id: PFL_3023
symbol: PFL_3023
gene_biotype: protein_coding
description:
  Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.


ensembl_gene_id: PFL_3026
symbol: PFL_3026
gene_biotype: protein_coding
description:
  Putative methyltransferase; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_3029
symbol: PFL_3029
gene_biotype: protein_coding
description:
  Biotin carboxylase; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01039; match to protein family HMM PF02785; match to protein family HMM PF02786.


ensembl_gene_id: PFL_3038
symbol: fbpA-2
gene_biotype: protein_coding
description:
  iron(III) ABC transporter, periplasmic iron(III)-binding protein; Identified by similarity to SP:P21408; match to protein family HMM PF01547.


ensembl_gene_id: PFL_3039
symbol: fbpB-2
gene_biotype: protein_coding
description:
  iron(III) ABC transporter, permease protein; Identified by similarity to SP:P21409; match to protein family HMM PF00528.


ensembl_gene_id: PFL_3040
symbol: fbpC
gene_biotype: protein_coding
description:
  iron(III) ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PFL_3042
symbol: PFL_3042
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.


ensembl_gene_id: PFL_3043
symbol: arnB
gene_biotype: protein_coding
description:
  UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily.


ensembl_gene_id: PFL_3044
symbol: arnC
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase; Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.


ensembl_gene_id: PFL_3045
symbol: arnA
gene_biotype: protein_coding
description:
  Bifunctional polymyxin resistance protein ArnA; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.


ensembl_gene_id: PFL_3046
symbol: arnD
gene_biotype: protein_coding
description:
  Polysaccharide deacetylase family protein; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily.


ensembl_gene_id: PFL_3047
symbol: arnT_1
gene_biotype: protein_coding
description:
  Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family.


ensembl_gene_id: PFL_3048
symbol: arnE
gene_biotype: protein_coding
description:
  Multidrug resistance protein, SMR family; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnE family.


ensembl_gene_id: PFL_3049
symbol: arnF
gene_biotype: protein_coding
description:
  Membrane protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnF family.


ensembl_gene_id: PFL_3050
symbol: PFL_3050
gene_biotype: protein_coding
description:
  UDP-glucose 6-dehydrogenase; Identified by similarity to SP:O86422; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.


ensembl_gene_id: PFL_3054
symbol: PFL_3054
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to GB:CAA98154.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_3055
symbol: astA-3
gene_biotype: protein_coding
description:
  Arginine N-succinyltransferase; Identified by similarity to SP:P76218; match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244.


ensembl_gene_id: PFL_3057
symbol: PFL_3057
gene_biotype: protein_coding
description:
  Putative leucine-responsive regulatory protein; Identified by similarity to SP:P37403; match to protein family HMM PF01037.


ensembl_gene_id: PFL_3063
symbol: PFL_3063
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase; Identified by similarity to SP:P45857; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: PFL_3064
symbol: fadB1x
gene_biotype: protein_coding
description:
  Enoyl-coa hydratase FadB1x; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: PFL_3067
symbol: fadB2x
gene_biotype: protein_coding
description:
  3-hydroxyacyl-CoA dehydrogenase FadB2x; Identified by similarity to GB:AAK18170.1; match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_3068
symbol: PFL_3068
gene_biotype: protein_coding
description:
  AMP-binding domain protein; Identified by similarity to SP:P39062; match to protein family HMM PF00501.


ensembl_gene_id: PFL_3070
symbol: mtlE
gene_biotype: protein_coding
description:
  Polyol ABC transporter, periplasmic polyol-binding protein MtlE; Identified by similarity to GB:AAC04468.1; match to protein family HMM PF01547.


ensembl_gene_id: PFL_3071
symbol: mtlF
gene_biotype: protein_coding
description:
  Polyol ABC transporter, permease protein MtlF; Identified by similarity to GB:AAC04469.1; match to protein family HMM PF00528.


ensembl_gene_id: PFL_3072
symbol: mtlG
gene_biotype: protein_coding
description:
  Polyol ABC transporter, permease protein MtlG; Identified by similarity to GB:AAC04470.1; match to protein family HMM PF00528.


ensembl_gene_id: PFL_3073
symbol: mtlK
gene_biotype: protein_coding
description:
  Polyol ABC transporter, ATP-binding protein MtlK; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_3074
symbol: mtlD
gene_biotype: protein_coding
description:
  Polyol dehydrogenase MtlD; Identified by similarity to GB:AAC04472.1; match to protein family HMM PF01232; match to protein family HMM PF08125; Belongs to the mannitol dehydrogenase family.


ensembl_gene_id: PFL_3075
symbol: mtlY
gene_biotype: protein_coding
description:
  Xylulokinase; Identified by similarity to GB:AAC04473.1; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.


ensembl_gene_id: PFL_3076
symbol: mtlZ
gene_biotype: protein_coding
description:
  Fructokinase; Identified by similarity to GB:AAC04474.1; match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: PFL_3079
symbol: lspL
gene_biotype: protein_coding
description:
  UDP-glucuronate 5'-epimerase; Identified by similarity to SP:O54067; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: PFL_3089
symbol: PFL_3089
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023.


ensembl_gene_id: PFL_3093
symbol: PFL_3093
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:Q9KED9; match to protein family HMM PF04794.


ensembl_gene_id: PFL_3098
symbol: ilvA_1
gene_biotype: protein_coding
description:
  Threonine ammonia-lyase, biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: PFL_3101
symbol: PFL_3101
gene_biotype: protein_coding
description:
  RimK-like ATP-grasp domain protein; Identified by match to protein family HMM PF02655; match to protein family HMM PF08443.


ensembl_gene_id: PFL_3103
symbol: yliI
gene_biotype: protein_coding
description:
  Aldose sugar dehydrogenase YliI; Identified by similarity to SP:P75804; match to protein family HMM PF07995.


ensembl_gene_id: PFL_3112
symbol: PFL_3112
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAN68472.1; match to protein family HMM PF04237.


ensembl_gene_id: PFL_3114
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: PFL_3115
symbol: PFL_3115
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08269.


ensembl_gene_id: PFL_3116
symbol: pnuC
gene_biotype: protein_coding
description:
  Nicotinamide mononucleotide transporter PnuC; Identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528.


ensembl_gene_id: PFL_3124
symbol: PFL_3124
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:Q00934; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728.


ensembl_gene_id: PFL_3126
symbol: PFL_3126
gene_biotype: protein_coding
description:
  Phospholipase C, phosphocholine-specific; Identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR03396.


ensembl_gene_id: PFL_3128
symbol: paaX
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation operon negative regulatory protein PaaX; Identified by similarity to SP:P76086; match to protein family HMM PF07848; match to protein family HMM PF08223; match to protein family HMM TIGR02277.


ensembl_gene_id: PFL_3129
symbol: paaY
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein PaaY; Identified by similarity to GB:AAC24341.2; similarity to GB:CAA66102.1; match to protein family HMM PF00132; match to protein family HMM TIGR02287.


ensembl_gene_id: PFL_3130
symbol: paaB
gene_biotype: protein_coding
description:
  Phenylacetate degradation enoyl-CoA hydratase PaaB; Identified by match to protein family HMM PF00378; match to protein family HMM TIGR02280.


ensembl_gene_id: PFL_3131
symbol: paaD
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein PaaD; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; match to protein family HMM TIGR02286.


ensembl_gene_id: PFL_3132
symbol: paaF
gene_biotype: protein_coding
description:
  phenylacetate-CoA ligase PaaF; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: PFL_3133
symbol: paaG
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaG subunit; Identified by match to protein family HMM PF05138; match to protein family HMM TIGR02156.


ensembl_gene_id: PFL_3134
symbol: paaH
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaH subunit; Identified by match to protein family HMM PF06243; match to protein family HMM TIGR02157.


ensembl_gene_id: PFL_3135
symbol: paaI
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaI subunit; Identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158.


ensembl_gene_id: PFL_3136
symbol: paaJ
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaJ subunit; Identified by match to protein family HMM PF01883; match to protein family HMM TIGR02159.


ensembl_gene_id: PFL_3137
symbol: paaK
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaK subunit; Identified by similarity to GB:ABF82243.1; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160.


ensembl_gene_id: PFL_3138
symbol: paaW
gene_biotype: protein_coding
description:
  Putative membrane protein PaaW; Identified by similarity to GB:ABF82244.1; match to protein family HMM PF04341.


