# geneInfo

ensembl_gene_id: PFL_3139
symbol: paaL
gene_biotype: protein_coding
description:
  Putative phenylacetic acid permease PaaL; Identified by similarity to GB:ABF82245.1; match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: PFL_3140
symbol: paaN
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein PaaN; Identified by match to protein family HMM PF00171; match to protein family HMM PF01575; match to protein family HMM TIGR02278.


ensembl_gene_id: PFL_3141
symbol: nhaB
gene_biotype: protein_coding
description:
  Na(+)/H(+) antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family.


ensembl_gene_id: PFL_3142
symbol: PFL_3142
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: PFL_3143
symbol: zwf_1
gene_biotype: protein_coding
description:
  Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: PFL_3144
symbol: gnd
gene_biotype: protein_coding
description:
  Phosphogluconate dehydrogenase (decarboxylating); Identified by similarity to SP:P12013; match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00872.


ensembl_gene_id: PFL_3149
symbol: chr
gene_biotype: protein_coding
description:
  Chromate transporter, CHR family; Identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937.


ensembl_gene_id: PFL_3154
symbol: iutA
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferric aerobactin receptor IutA; Transducer; identified by similarity to SP:P14542; match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_3157
symbol: ygfO
gene_biotype: protein_coding
description:
  High-affinity xanthine transporter, NCS2 family, YgfO; Identified by similarity to SP:P67444; match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173.


ensembl_gene_id: PFL_3159
symbol: glsA
gene_biotype: protein_coding
description:
  Identified by similarity to SP:O87405; match to protein family HMM PF04960; Belongs to the glutaminase family.


ensembl_gene_id: PFL_3161
symbol: PFL_3161
gene_biotype: protein_coding
description:
  ABC transporter, peptide/opine/nickel uptake transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_3162
symbol: PFL_3162
gene_biotype: protein_coding
description:
  ABC transporter, peptide/opine/nickel uptake transporter (PepT) family, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: PFL_3164
symbol: PFL_3164
gene_biotype: protein_coding
description:
  Peptide/nickel transport system substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_3170
symbol: PFL_3170
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.


ensembl_gene_id: PFL_3172
symbol: PFL_3172
gene_biotype: protein_coding
description:
  Monooxygenase, SsuD family; Identified by similarity to SP:P40402; match to protein family HMM PF00296.


ensembl_gene_id: PFL_3181
symbol: PFL_3181
gene_biotype: protein_coding
description:
  Nitrate/nitrite/cyanate ABC transporter, NitT family, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: PFL_3182
symbol: PFL_3182
gene_biotype: protein_coding
description:
  NitT/TauT family transport system substrate-binding protein; Identified by similarity to SP:Q44292; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_3183
symbol: PFL_3183
gene_biotype: protein_coding
description:
  Nitrate/nitrite/cyanate ABC transporter, NitT family, ATP-binding protein; Identified by similarity to SP:P38045; match to protein family HMM PF00005.


ensembl_gene_id: PFL_3188
symbol: metN3
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PFL_3189
symbol: PFL_3189
gene_biotype: protein_coding
description:
  Lipoprotein, YaeC family; Identified by match to protein family HMM PF03180; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: PFL_3193
symbol: PFL_3193
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by similarity to SP:P14376; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: PFL_3196
symbol: PFL_3196
gene_biotype: protein_coding
description:
  DNA-binding response regulator, LuxR family; Identified by similarity to SP:P14374; match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.


ensembl_gene_id: PFL_3199
symbol: PFL_3199
gene_biotype: protein_coding
description:
  VRR-NUC domain protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.


ensembl_gene_id: PFL_3202
symbol: pueA
gene_biotype: protein_coding
description:
  Identified by similarity to GB:ABM54447.1; match to protein family HMM PF00353; match to protein family HMM PF01764.


ensembl_gene_id: PFL_3203
symbol: pspB
gene_biotype: protein_coding
description:
  Serine protease B; Identified by similarity to GB:ABB55359.1; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601.


ensembl_gene_id: PFL_3204
symbol: pspA
gene_biotype: protein_coding
description:
  Serine protease A; Identified by similarity to GB:ABB55358.1; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601.


ensembl_gene_id: PFL_3205
symbol: pueB
gene_biotype: protein_coding
description:
  Identified by similarity to GB:ABM54446.1; match to protein family HMM PF00353; match to protein family HMM PF01764.


ensembl_gene_id: PFL_3206
symbol: aprF
gene_biotype: protein_coding
description:
  Outer membrane protein; Identified by similarity to GB:AAF87592.1; similarity to GB:ABM54445.1; match to protein family HMM PF02321; match to protein family HMM TIGR01844.


ensembl_gene_id: PFL_3207
symbol: aprE
gene_biotype: protein_coding
description:
  Membrane fusion protein; Identified by similarity to GB:AAF87591.1; similarity to GB:ABM54444.1; match to protein family HMM PF00529; match to protein family HMM TIGR01843.


ensembl_gene_id: PFL_3208
symbol: aprD
gene_biotype: protein_coding
description:
  ABC transporter; Identified by similarity to GB:AAF87590.1; similarity to GB:ABB55357.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842.


ensembl_gene_id: PFL_3210
symbol: aprA
gene_biotype: protein_coding
description:
  Extracellular alkaline metalloprotease AprA; Identified by similarity to SP:Q03023; similarity to GB:AAP44489.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.


ensembl_gene_id: PFL_3217
symbol: styD
gene_biotype: protein_coding
description:
  Phenylacetaldehyde dehydrogenase; Identified by similarity to SP:P80668; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_3219
symbol: PFL_3219
gene_biotype: protein_coding
description:
  Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PFL_3224
symbol: PFL_3224
gene_biotype: protein_coding
description:
  Periplasmic putrescine-binding protein, PotF family; Identified by similarity to SP:P31133; match to protein family HMM PF01547.


ensembl_gene_id: PFL_3230
symbol: PFL_3230
gene_biotype: protein_coding
description:
  Pirin-like protein, YhhW family; Identified by similarity to SP:P46852; match to protein family HMM PF02678; Belongs to the pirin family.


ensembl_gene_id: PFL_3231
symbol: pgm
gene_biotype: protein_coding
description:
  Phosphoglucomutase, alpha-D-glucose phosphate-specific; Identified by similarity to SP:P36938; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01132.


ensembl_gene_id: PFL_3233
symbol: mexT
gene_biotype: protein_coding
description:
  Transcriptional regulator MexT; Identified by similarity to GB:CAA07694.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_3237
symbol: scrB
gene_biotype: protein_coding
description:
  Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: PFL_3238
symbol: PFL_3238
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01306; match to protein family HMM PF07690; match to protein family HMM TIGR00882.


ensembl_gene_id: PFL_3240
symbol: mexE
gene_biotype: protein_coding
description:
  Multidrug efflux RND transporter, membrane fusion protein MexE; Identified by similarity to GB:CAA67866.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_3241
symbol: mexF
gene_biotype: protein_coding
description:
  Multidrug efflux RND transporter, permease protein MexF; Identified by similarity to GB:CAA67864.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915.


ensembl_gene_id: PFL_3242
symbol: oprN
gene_biotype: protein_coding
description:
  Multidrug efflux RND transporter, outer membrane factor lipoprotein OprN; Identified by similarity to GB:CAA67865.1; match to protein family HMM PF02321; match to protein family HMM TIGR01845.


ensembl_gene_id: PFL_3243
symbol: yneE
gene_biotype: protein_coding
description:
  Swarming motility protein YneE; Identified by similarity to SP:P76146; match to protein family HMM PF05249.


ensembl_gene_id: PFL_3246
symbol: PFL_3246
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: PFL_3248
symbol: PFL_3248
gene_biotype: protein_coding
description:
  Response regulator/sensor histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: PFL_3250
symbol: PFL_3250
gene_biotype: protein_coding
description:
  Chemotaxis protein methyltransferase, CheR family; Identified by match to protein family HMM PF01739; match to protein family HMM PF03705.


ensembl_gene_id: PFL_3251
symbol: PFL_3251
gene_biotype: protein_coding
description:
  CHASE3/GAF sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF05227.


ensembl_gene_id: PFL_3254
symbol: mtlR
gene_biotype: protein_coding
description:
  Transcriptional activator MtlR; Identified by similarity to GB:AAC34292.1; match to protein family HMM PF00165.


ensembl_gene_id: PFL_3255
symbol: efeU
gene_biotype: protein_coding
description:
  Ferrous iron permease EfeU; Identified by similarity to SP:P75901; match to protein family HMM PF03239.


ensembl_gene_id: PFL_3256
symbol: efeO
gene_biotype: protein_coding
description:
  Periplasmic iron transport protein EfeO; Identified by similarity to SP:P0AB24; match to protein family HMM PF09375.


ensembl_gene_id: PFL_3257
symbol: efeB
gene_biotype: protein_coding
description:
  Heme-containing peroxidase/deferrochelatase EfeB; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.


ensembl_gene_id: PFL_3258
symbol: PFL_3258
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAO57073.1; match to protein family HMM PF09375.


ensembl_gene_id: PFL_3260
symbol: pssA_2
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--serine O-phosphatidyltransferase; Identified by similarity to SP:P23830; match to protein family HMM PF00614.


ensembl_gene_id: PFL_3263
symbol: sfnG
gene_biotype: protein_coding
description:
  Dimethyl sulfone monooxygenase SfnG; Identified by match to protein family HMM PF00296; match to protein family HMM TIGR04021.


ensembl_gene_id: PFL_3266
symbol: nudC
gene_biotype: protein_coding
description:
  NAD(+) diphosphatase; Identified by similarity to SP:P32664; match to protein family HMM PF00293; match to protein family HMM PF09296; match to protein family HMM PF09297.


ensembl_gene_id: PFL_3268
symbol: rpeA
gene_biotype: protein_coding
description:
  Sensor histidine kinase RpeA; Identified by similarity to GB:AAO43104.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_3270
symbol: acrA
gene_biotype: protein_coding
description:
  Identified by similarity to SP:P0AE06; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_3271
symbol: acrB
gene_biotype: protein_coding
description:
  Identified by similarity to SP:P31224; match to protein family HMM PF00873; match to protein family HMM TIGR00915.


ensembl_gene_id: PFL_3280
symbol: PFL_3280
gene_biotype: protein_coding
description:
  Inorganic anion transporter, SulP family; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.


ensembl_gene_id: PFL_3281
symbol: pepN
gene_biotype: protein_coding
description:
  Membrane alanyl aminopeptidase; Identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414.


ensembl_gene_id: PFL_3286
symbol: nadK
gene_biotype: protein_coding
description:
  NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: PFL_3288
symbol: arsB-2
gene_biotype: protein_coding
description:
  Arsenical pump membrane protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.


ensembl_gene_id: PFL_3291
symbol: PFL_3291
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_3293
symbol: PFL_3293
gene_biotype: protein_coding
description:
  Identified by similarity to SP:P28629; match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711.


ensembl_gene_id: PFL_3294
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: PFL_3299
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: PFL_3300
symbol: PFL_3300
gene_biotype: protein_coding
description:
  Putative membrane-bound lytic murein transglycosylase; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474.


ensembl_gene_id: PFL_3301
symbol: PFL_3301
gene_biotype: protein_coding
description:
  ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.


ensembl_gene_id: PFL_3305
symbol: PFL_3305
gene_biotype: protein_coding
description:
  Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_3306
symbol: fabI
gene_biotype: protein_coding
description:
  Enoyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:Q9ZFE4; match to protein family HMM PF00106.


ensembl_gene_id: PFL_3308
symbol: PFL_3308
gene_biotype: protein_coding
description:
  GAF domain/diguanylate cyclase domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_3310
symbol: ppyR
gene_biotype: protein_coding
description:
  Putative transmembrane sensor/regulator PpyR; See Attila et al. (PMID: 18157527) for more information; identified by similarity to GB:AAG06051.1.


ensembl_gene_id: PFL_3312
symbol: PFL_3312
gene_biotype: protein_coding
description:
  Phosphotransferase system, EIIC domain/cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF02378.


ensembl_gene_id: PFL_3316
symbol: PFL_3316
gene_biotype: protein_coding
description:
  3-demethylubiquinone-9 3-methyltransferase domain protein; Identified by match to protein family HMM PF06983.


ensembl_gene_id: PFL_3325
symbol: PFL_3325
gene_biotype: protein_coding
description:
  Response regulator/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_3326
symbol: ccpA_1
gene_biotype: protein_coding
description:
  Cytochrome c551 peroxidase; Identified by similarity to SP:P55929; match to protein family HMM PF03150.


ensembl_gene_id: PFL_3330
symbol: PFL_3330
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_3331
symbol: nudK
gene_biotype: protein_coding
description:
  GDP-mannose pyrophosphatase NudK/conserved domain protein; Identified by similarity to SP:P37128; match to protein family HMM PF00293; match to protein family HMM TIGR00052.


ensembl_gene_id: PFL_3335
symbol: fabV
gene_biotype: protein_coding
description:
  Short-chain alcohol dehydrogenase family protein; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.


ensembl_gene_id: PFL_3340
symbol: PFL_3340
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279.


ensembl_gene_id: PFL_3341
symbol: PFL_3341
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00561; Belongs to the AB hydrolase superfamily. MetX family.


ensembl_gene_id: PFL_3342
symbol: hyi_2
gene_biotype: protein_coding
description:
  Hydroxypyruvate isomerase; Identified by similarity to SP:P30147; match to protein family HMM PF01261; Belongs to the hyi family.


ensembl_gene_id: PFL_3343
symbol: PFL_3343
gene_biotype: protein_coding
description:
  Transporter, gluconate:H+ symporter family; Identified by similarity to SP:Q46892; match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791.


ensembl_gene_id: PFL_3345
symbol: otnK
gene_biotype: protein_coding
description:
  YgbK domain protein; Catalyzes the ATP-dependent phosphorylation of 3-oxo- tetronate to 3-oxo-tetronate 4-phosphate.


ensembl_gene_id: PFL_3349
symbol: mgtA_1
gene_biotype: protein_coding
description:
  Magnesium-importing ATPase; Identified by similarity to SP:P0ABB8; match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524.


ensembl_gene_id: PFL_3356
symbol: hpaB
gene_biotype: protein_coding
description:
  4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; Identified by similarity to SP:Q57160; match to protein family HMM PF03241; match to protein family HMM TIGR02310.


ensembl_gene_id: PFL_3357
symbol: hpaC
gene_biotype: protein_coding
description:
  4-hydroxyphenylacetate 3-monooxygenase, reductase component; Identified by similarity to SP:Q57501; match to protein family HMM PF01613; match to protein family HMM TIGR02296.


ensembl_gene_id: PFL_3358
symbol: PFL_3358
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF08281.


ensembl_gene_id: PFL_3363
symbol: dad
gene_biotype: protein_coding
description:
  2,4'-dihydroxyacetophenone dioxygenase; Identified by similarity to GB:CAB53781.1; match to protein family HMM PF07883.


ensembl_gene_id: PFL_3365
symbol: PFL_3365
gene_biotype: protein_coding
description:
  Putative (R,R)-butanediol dehydrogenase; Identified by similarity to GB:AAB58982.1; match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: PFL_3366
symbol: PFL_3366
gene_biotype: protein_coding
description:
  Carbohydrate-selective porin, OprB family protein; Identified by match to protein family HMM PF04966.


ensembl_gene_id: PFL_3367
symbol: alkJ
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase AlkJ; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.


ensembl_gene_id: PFL_3369
symbol: hpaA
gene_biotype: protein_coding
description:
  4-hydroxyphenylacetate catabolism regulatory protein HpaA; Identified by similarity to PIR:A55349; match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM TIGR02297.


ensembl_gene_id: PFL_3370
symbol: hpaG_1
gene_biotype: protein_coding
description:
  4-hydroxyphenylacetate degradation isomerase/decarboxylase domain protein; Identified by similarity to SP:P37352; match to protein family HMM PF01557; match to protein family HMM TIGR02305.


ensembl_gene_id: PFL_3371
symbol: hpaG_2
gene_biotype: protein_coding
description:
  4-hydroxyphenylacetate degradation isomerase/decarboxylase domain protein; Identified by similarity to SP:P37352; match to protein family HMM PF01557; match to protein family HMM TIGR02303.


ensembl_gene_id: PFL_3372
symbol: hpaE
gene_biotype: protein_coding
description:
  5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Identified by similarity to SP:P42269; match to protein family HMM PF00171; match to protein family HMM TIGR02299; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_3373
symbol: hpaD
gene_biotype: protein_coding
description:
  3,4-dihydroxyphenylacetate 2,3-dioxygenase; Identified by similarity to SP:Q05353; match to protein family HMM PF02900; match to protein family HMM TIGR02298.


ensembl_gene_id: PFL_3376
symbol: hpaH
gene_biotype: protein_coding
description:
  2-oxo-hepta-3-ene-1,7-dioic acid hydratase; Identified by similarity to SP:P42270; match to protein family HMM PF01689; match to protein family HMM TIGR02312.


ensembl_gene_id: PFL_3377
symbol: hpaI
gene_biotype: protein_coding
description:
  2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Identified by similarity to SP:Q47098; match to protein family HMM PF03328; match to protein family HMM TIGR02311; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: PFL_3378
symbol: glxK
gene_biotype: protein_coding
description:
  Glycerate kinase; Identified by similarity to SP:Q9Z9P2; match to protein family HMM PF02595; match to protein family HMM TIGR00045; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: PFL_3379
symbol: PFL_3379
gene_biotype: protein_coding
description:
  Putative sugar diacid recognition domain protein; Identified by match to protein family HMM PF05651.


ensembl_gene_id: PFL_3382
symbol: PFL_3382
gene_biotype: protein_coding
description:
  Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.


ensembl_gene_id: PFL_3384
symbol: PFL_3384
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.


ensembl_gene_id: PFL_3386
symbol: hpaR
gene_biotype: protein_coding
description:
  Homoprotocatechuate degradation operon regulator HpaR; Identified by similarity to SP:P62573; match to protein family HMM PF01047; match to protein family HMM TIGR02337.


ensembl_gene_id: PFL_3387
symbol: hppD
gene_biotype: protein_coding
description:
  4-hydroxyphenylpyruvate dioxygenase; Identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM TIGR01263.


ensembl_gene_id: PFL_3393
symbol: gloA
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.


ensembl_gene_id: PFL_3394
symbol: ahpF
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase, F subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR03140.


ensembl_gene_id: PFL_3395
symbol: ahpC
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase, C subunit; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: PFL_3396
symbol: tnpS
gene_biotype: protein_coding
description:
  Identified by similarity to GB:BAB83832.1; match to protein family HMM PF00589; Belongs to the 'phage' integrase family.


ensembl_gene_id: PFL_3399
symbol: galU
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099.


ensembl_gene_id: PFL_3408
symbol: alkB-2
gene_biotype: protein_coding
description:
  Alkylated DNA repair protein AlkB; Identified by similarity to SP:P05050; match to protein family HMM PF03171.


ensembl_gene_id: PFL_3409
symbol: ada
gene_biotype: protein_coding
description:
  ADA regulatory protein; Identified by similarity to SP:P06134; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM TIGR00589.


ensembl_gene_id: PFL_3410
symbol: PFL_3410
gene_biotype: protein_coding
description:
  Transcription activator, effector binding domain protein; Identified by match to protein family HMM PF06445.


ensembl_gene_id: PFL_3412
symbol: modA
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, periplasmic molybdate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256.


ensembl_gene_id: PFL_3413
symbol: modB
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: PFL_3414
symbol: modC
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, ATP-binding protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.


ensembl_gene_id: PFL_3418
symbol: PFL_3418
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF01906; Belongs to the UPF0145 family.


ensembl_gene_id: PFL_3429
symbol: PFL_3429
gene_biotype: protein_coding
description:
  NAD(P)H quinone oxidoreductase, quinone family; Identified by similarity to SP:P45245; match to protein family HMM PF02525; match to protein family HMM PF03358.


ensembl_gene_id: PFL_3432
symbol: PFL_3432
gene_biotype: protein_coding
description:
  HAD hydrolase, family IB; Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490.


ensembl_gene_id: PFL_3447
symbol: PFL_3447
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_3449
symbol: PFL_3449
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:CAC46374.1; match to protein family HMM PF06742; match to protein family HMM PF06863.


ensembl_gene_id: PFL_3458
symbol: cpo
gene_biotype: protein_coding
description:
  Non-heme chloroperoxidase; Identified by similarity to SP:P25026; match to protein family HMM PF00561.


ensembl_gene_id: PFL_3469
symbol: PFL_3469
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein; Identified by similarity to SP:P44731; match to protein family HMM PF01547.


ensembl_gene_id: PFL_3471
symbol: vanA
gene_biotype: protein_coding
description:
  Vanillate O-demethylase, oxygenase subunit; Identified by similarity to SP:O05616; match to protein family HMM PF00355.


ensembl_gene_id: PFL_3472
symbol: vanB
gene_biotype: protein_coding
description:
  Vanillate O-demethylase oxidoreductase; Identified by similarity to SP:O54037; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.


ensembl_gene_id: PFL_3473
symbol: vanR
gene_biotype: protein_coding
description:
  Transcriptional regulator VanR; Identified by similarity to GB:AAC27105.1; match to protein family HMM PF00392; match to protein family HMM PF07729.


ensembl_gene_id: PFL_3475
symbol: xylC
gene_biotype: protein_coding
description:
  Benzaldehyde dehydrogenase; Identified by similarity to SP:P43503; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_3476
symbol: panE_1
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: PFL_3478
symbol: mdlC
gene_biotype: protein_coding
description:
  Benzoylformate decarboxylase; Identified by similarity to SP:P20906; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.


ensembl_gene_id: PFL_3482
symbol: PFL_3482
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family/acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583; match to protein family HMM PF01047.


ensembl_gene_id: PFL_3483
symbol: PFL_3483
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_3488
symbol: pchA
gene_biotype: protein_coding
description:
  Isochorismate synthase PchA; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70804.1; match to protein family HMM PF00425; match to protein family HMM TIGR00543.


ensembl_gene_id: PFL_3489
symbol: pchB
gene_biotype: protein_coding
description:
  Isochorismate pyruvate-lyase PchB; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70805.1; match to protein family HMM PF01817; match to protein family HMM TIGR01803.


ensembl_gene_id: PFL_3490
symbol: pchC
gene_biotype: protein_coding
description:
  Enantio-pyochelin biosynthetic protein PchC; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70806.1; match to protein family HMM PF00975.


ensembl_gene_id: PFL_3491
symbol: pchK
gene_biotype: protein_coding
description:
  Saccharopine dehydrogenase PchK; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70807.1; match to protein family HMM PF03435.


ensembl_gene_id: PFL_3492
symbol: pchF
gene_biotype: protein_coding
description:
  Enantio-pyochelin synthetase F; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70808.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08415; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_3493
symbol: pchE
gene_biotype: protein_coding
description:
  Enantio-pyochelin synthetase E; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70809.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08415; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_3494
symbol: pchI
gene_biotype: protein_coding
description:
  Putative ABC transporter, permease/ATP-binding protein; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70810.1; match to protein family HMM PF00005; match to protein family HMM PF00664.


ensembl_gene_id: PFL_3495
symbol: pchH
gene_biotype: protein_coding
description:
  Putative ABC transporter, permease/ATP-binding protein; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70811.1; match to protein family HMM PF00005.


ensembl_gene_id: PFL_3496
symbol: pchD
gene_biotype: protein_coding
description:
  salicyl-AMP ligase; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:AAD55799.1; similarity to GB:ABW70812.1; match to protein family HMM PF00501.


ensembl_gene_id: PFL_3497
symbol: pchR
gene_biotype: protein_coding
description:
  Regulatory protein PchR; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to SP:P40883; similarity to GB:ABW70813.1; match to protein family HMM PF00165.


ensembl_gene_id: PFL_3498
symbol: fetA
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane enantio-pyochelin receptor; Receptor Hoegy et al. 2009; identified by similarity to GP:27502149; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_3500
symbol: PFL_3500
gene_biotype: protein_coding
description:
  Iron-chelate uptake ABC transporter, FeCT family, periplasmic iron-chelate-binding protein; Identified by match to protein family HMM PF01497.


ensembl_gene_id: PFL_3502
symbol: PFL_3502
gene_biotype: protein_coding
description:
  Iron-chelate uptake ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: PFL_3504
symbol: sotB
gene_biotype: protein_coding
description:
  Sugar efflux transporter B; Identified by similarity to SP:Q9S3J9; match to protein family HMM PF07690.


ensembl_gene_id: PFL_3511
symbol: PFL_3511
gene_biotype: protein_coding
description:
  Methionine synthase family protein, vitamin-B12 independent; Identified by match to protein family HMM PF01717.


ensembl_gene_id: PFL_3514
symbol: megL
gene_biotype: protein_coding
description:
  Methionine gamma-lyase; Identified by similarity to SP:P13254; match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM PF06838; match to protein family HMM TIGR01328.


ensembl_gene_id: PFL_3515
symbol: PFL_3515
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein; Identified by similarity to SP:P21175; match to protein family HMM PF01094.


ensembl_gene_id: PFL_3520
symbol: PFL_3520
gene_biotype: protein_coding
description:
  IPT/TIG domain/outer membrane autotransporter barrel domain protein; Identified by match to protein family HMM PF01833; match to protein family HMM PF03797; match to protein family HMM PF05345; match to protein family HMM TIGR01414.


ensembl_gene_id: PFL_3521
symbol: PFL_3521
gene_biotype: protein_coding
description:
  Aminotransferase, class III family; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PFL_3523
symbol: PFL_3523
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase (NAD) family protein; Identified by similarity to SP:P23883; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_3524
symbol: argE_1
gene_biotype: protein_coding
description:
  Acetylornithine deacetylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01892.


ensembl_gene_id: PFL_3531
symbol: PFL_3531
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P52686; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_3535
symbol: hipO
gene_biotype: protein_coding
description:
  Hippurate hydrolase; Identified by similarity to SP:P45493; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: PFL_3537
symbol: PFL_3537
gene_biotype: protein_coding
description:
  Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_3538
symbol: nspC
gene_biotype: protein_coding
description:
  Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.


ensembl_gene_id: PFL_3540
symbol: PFL_3540
gene_biotype: protein_coding
description:
  Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.


ensembl_gene_id: PFL_3548
symbol: PFL_3548
gene_biotype: protein_coding
description:
  Putative amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.


ensembl_gene_id: PFL_3553
symbol: PFL_3553
gene_biotype: protein_coding
description:
  Putative N-methylproline demethylase; Identified by similarity to SP:O87278; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992.


ensembl_gene_id: PFL_3557
symbol: PFL_3557
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family/amidohydrolase family protein; Identified by similarity to PIR:AH0235; match to protein family HMM PF00392; match to protein family HMM PF04909; match to protein family HMM PF07729.


ensembl_gene_id: PFL_3558
symbol: PFL_3558
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.


ensembl_gene_id: PFL_3561
symbol: pgsA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PFL_3562
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: PFL_3563
symbol: gacA
gene_biotype: protein_coding
description:
  Response regulator GacA; See Laville et al 1992 (PMID: 1311842) for more information; identified by match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: PFL_3568
symbol: aroF_1
gene_biotype: protein_coding
description:
  3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: PFL_3569
symbol: ppiC_1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase C; Identified by similarity to SP:P0A9L5; match to protein family HMM PF00639.


ensembl_gene_id: PFL_3570
symbol: PFL_3570
gene_biotype: protein_coding
description:
  Peptide ABC transporter, periplasmic peptide-binding protein, YejA family; Identified by similarity to SP:P33913; match to protein family HMM PF00496.


ensembl_gene_id: PFL_3571
symbol: PFL_3571
gene_biotype: protein_coding
description:
  Peptide ABC transporter, permease protein, YejB family; Identified by similarity to SP:P0AFU0; match to protein family HMM PF00528.


ensembl_gene_id: PFL_3572
symbol: PFL_3572
gene_biotype: protein_coding
description:
  Peptide ABC transporter, permease protein, YejE family; Identified by similarity to SP:P33915; match to protein family HMM PF00528.


ensembl_gene_id: PFL_3573
symbol: PFL_3573
gene_biotype: protein_coding
description:
  Peptide ABC transporter, ATP-binding protein, YejF family; Identified by similarity to SP:P33916; match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_3574
symbol: PFL_3574
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF08448.


ensembl_gene_id: PFL_3576
symbol: bdhA
gene_biotype: protein_coding
description:
  3-hydroxybutyrate dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR01963.


ensembl_gene_id: PFL_3577
symbol: acsA1
gene_biotype: protein_coding
description:
  Acetoacetyl-coenzyme A synthetase; Identified by similarity to SP:Q9Z3R3; match to protein family HMM PF00501; match to protein family HMM TIGR01217.


ensembl_gene_id: PFL_3578
symbol: PFL_3578
gene_biotype: protein_coding
description:
  Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_3580
symbol: kdgK_2
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxygluconokinase; Identified by similarity to SP:P45416; match to protein family HMM PF00294.


ensembl_gene_id: PFL_3584
symbol: rtcB
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF01139; Belongs to the RtcB family.


ensembl_gene_id: PFL_3595
symbol: wecB
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 2-epimerase; Identified by similarity to SP:P27828; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: PFL_3597
symbol: PFL_3597
gene_biotype: protein_coding
description:
  Integral membrane protein, TerC family/CBS domain/transport associated domain protein; Identified by similarity to SP:P76389; match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741.


ensembl_gene_id: PFL_3601
symbol: PFL_3601
gene_biotype: protein_coding
description:
  Drug resistance transporter, EmrB/QacA family; Identified by similarity to GB:CAE51185.1; match to protein family HMM PF07690.


ensembl_gene_id: PFL_3602
symbol: PFL_3602
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.


ensembl_gene_id: PFL_3603
symbol: poxB
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (cytochrome); Identified by similarity to SP:P07003; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.


ensembl_gene_id: PFL_3604
symbol: prnA
gene_biotype: protein_coding
description:
  Tryptophan halogenase PrnA; Identified by similarity to GB:AAB97504.1; match to protein family HMM PF01266; match to protein family HMM PF04820.


ensembl_gene_id: PFL_3605
symbol: prnB
gene_biotype: protein_coding
description:
  Pyrrolnitrin biosynthesis enzyme PrnB; Identified by similarity to GB:AAB97505.1; match to protein family HMM PF08933.


ensembl_gene_id: PFL_3606
symbol: prnC
gene_biotype: protein_coding
description:
  Halogenase PrnC; Identified by similarity to GB:AAB97506.1; match to protein family HMM PF01266; match to protein family HMM PF04820.


ensembl_gene_id: PFL_3607
symbol: prnD
gene_biotype: protein_coding
description:
  Aminopyrrolnitrin oxidase PrnD; Identified by similarity to GB:AAB97507.1; match to protein family HMM PF00355.


ensembl_gene_id: PFL_3609
symbol: PFL_3609
gene_biotype: protein_coding
description:
  Flavin reductase-like protein; Identified by similarity to SP:P54990; match to protein family HMM PF01613.


ensembl_gene_id: PFL_3612
symbol: PFL_3612
gene_biotype: protein_coding
description:
  TonB dependent outermembrane receptor; Transducer; identified by match to protein family HMM PF07660; match to protein family HMM PF07715.


ensembl_gene_id: PFL_3614
symbol: PFL_3614
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359.


ensembl_gene_id: PFL_3618
symbol: PFL_3618
gene_biotype: protein_coding
description:
  Molybdenum-pterin binding protein; Identified by similarity to SP:Q08385; match to protein family HMM PF03459; match to protein family HMM TIGR00638.


ensembl_gene_id: PFL_3622
symbol: fepC
gene_biotype: protein_coding
description:
  Ferric enterobactin ABC transporter, ATP-binding protein FepC; Identified by similarity to SP:P23878; match to protein family HMM PF00005.


ensembl_gene_id: PFL_3623
symbol: fepB
gene_biotype: protein_coding
description:
  Ferric enterobactin ABC transporter, periplasmic ferric enterobactin-binding protein FepB; Identified by similarity to SP:P0AEL6; match to protein family HMM PF01497.


ensembl_gene_id: PFL_3624
symbol: fepD
gene_biotype: protein_coding
description:
  Ferric enterobactin ABC transporter, permease protein FepD; Identified by similarity to SP:P23876; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: PFL_3625
symbol: fepG
gene_biotype: protein_coding
description:
  Ferric enterobactin ABC transporter, permease protein FepG; Identified by similarity to SP:P23877; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: PFL_3627
symbol: PFL_3627
gene_biotype: protein_coding
description:
  Autoinducer-binding transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472.


ensembl_gene_id: PFL_3631
symbol: PFL_3631
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD C-terminal domain protein; Identified by match to protein family HMM PF01872.


ensembl_gene_id: PFL_3633
symbol: PFL_3633
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368.


ensembl_gene_id: PFL_3634
symbol: PFL_3634
gene_biotype: protein_coding
description:
  Outer membrane autotransporter barrel domain protein; Identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414.


ensembl_gene_id: PFL_3640
symbol: aphA_1
gene_biotype: protein_coding
description:
  Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850.


ensembl_gene_id: PFL_3641
symbol: arcB
gene_biotype: protein_coding
description:
  Ornithine cyclodeaminase; Identified by similarity to SP:P09773; match to protein family HMM PF02423.


ensembl_gene_id: PFL_3642
symbol: cycA
gene_biotype: protein_coding
description:
  D-serine/D-alanine/glycine transporter; Identified by similarity to SP:P0AAE0; match to protein family HMM PF00324.


ensembl_gene_id: PFL_3644
symbol: PFL_3644
gene_biotype: protein_coding
description:
  Thiolase domain protein; Identified by match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: PFL_3647
symbol: PFL_3647
gene_biotype: protein_coding
description:
  Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: PFL_3648
symbol: PFL_3648
gene_biotype: protein_coding
description:
  Identified by similarity to GB:AAK18072.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_3649
symbol: PFL_3649
gene_biotype: protein_coding
description:
  Tartrate dehydrogenase; Identified by similarity to SP:P76251; match to protein family HMM PF00180; match to protein family HMM TIGR02089.


ensembl_gene_id: PFL_3653
symbol: bchI
gene_biotype: protein_coding
description:
  Magnesium chelatase, subunit BchI; Identified by similarity to SP:P26239; match to protein family HMM PF01078; match to protein family HMM PF07728.


ensembl_gene_id: PFL_3654
symbol: cobN
gene_biotype: protein_coding
description:
  Cobaltochelatase, CobN subunit; Identified by match to protein family HMM PF02514; match to protein family HMM TIGR02257.


ensembl_gene_id: PFL_3655
symbol: cobW
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475.


ensembl_gene_id: PFL_3656
symbol: cbtB
gene_biotype: protein_coding
description:
  Putative cobalt transporter, subunit CbtB; Identified by match to protein family HMM PF09489; match to protein family HMM TIGR02459.


ensembl_gene_id: PFL_3657
symbol: cbtA
gene_biotype: protein_coding
description:
  Putative cobalt transporter subunit CbtA; Identified by match to protein family HMM PF09490; match to protein family HMM TIGR02458.


ensembl_gene_id: PFL_3659
symbol: cobM
gene_biotype: protein_coding
description:
  Precorrin-4 C(11)-methyltransferase; Identified by similarity to SP:P21922; match to protein family HMM PF00590; match to protein family HMM TIGR01465.


ensembl_gene_id: PFL_3660
symbol: yhgI
gene_biotype: protein_coding
description:
  IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.


ensembl_gene_id: PFL_3661
symbol: cti
gene_biotype: protein_coding
description:
  Esterified fatty acid cis/trans isomerase; Identified by similarity to GB:AAD41252.1; match to protein family HMM PF06934.


ensembl_gene_id: PFL_3662
symbol: metH
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: PFL_3664
symbol: PFL_3664
gene_biotype: protein_coding
description:
  Periplasmic sugar-binding domain protein/LacI transcriptional regulator; Identified by match to protein family HMM PF00532.


ensembl_gene_id: PFL_3666
symbol: PFL_3666
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAO56230.1; match to protein family HMM PF06073.


ensembl_gene_id: PFL_3667
symbol: PFL_3667
gene_biotype: protein_coding
description:
  Peptidase, S49 family; Identified by match to protein family HMM PF01343; match to protein family HMM PF08496.


ensembl_gene_id: PFL_3670
symbol: PFL_3670
gene_biotype: protein_coding
description:
  Formyl transferase domain/enoyl-CoA hydratase/isomerase family protein; Identified by match to protein family HMM PF00378; match to protein family HMM PF00551; match to protein family HMM PF02911; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: PFL_3674
symbol: PFL_3674
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_3675
symbol: PFL_3675
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: PFL_3677
symbol: PFL_3677
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP:P21629; match to protein family HMM PF00005.


ensembl_gene_id: PFL_3678
symbol: PFL_3678
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21630; match to protein family HMM PF00005.


ensembl_gene_id: PFL_3679
symbol: PFL_3679
gene_biotype: protein_coding
description:
  N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM TIGR01879.


ensembl_gene_id: PFL_3691
symbol: uvrA_1
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; Identified by similarity to SP:O34863; match to protein family HMM PF00005; match to protein family HMM TIGR00630.


ensembl_gene_id: PFL_3693
symbol: PFL_3693
gene_biotype: protein_coding
description:
  Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_3696
symbol: PFL_3696
gene_biotype: protein_coding
description:
  Curli production assembly/transport component CsgG; Identified by match to protein family HMM PF03783.


ensembl_gene_id: PFL_3697
symbol: dnaE2
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: PFL_3700
symbol: lexA2
gene_biotype: protein_coding
description:
  Putative LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: PFL_3703
symbol: PFL_3703
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:C83509; match to protein family HMM PF09694; match to protein family HMM TIGR02001.


ensembl_gene_id: PFL_3709
symbol: PFL_3709
gene_biotype: protein_coding
description:
  Oxidoreductase, FAD-linked; Identified by match to protein family HMM PF01565; match to protein family HMM PF04030; match to protein family HMM TIGR01409; match to protein family HMM TIGR01679.


ensembl_gene_id: PFL_3711
symbol: tonB4
gene_biotype: protein_coding
description:
  Periplasmic energy transduction protein TonB4; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: PFL_3712
symbol: exbD4
gene_biotype: protein_coding
description:
  TonB system transport protein ExbD4; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PFL_3713
symbol: exbB4
gene_biotype: protein_coding
description:
  TonB system transport protein ExbB4; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PFL_3715
symbol: PFL_3715
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.


ensembl_gene_id: PFL_3718
symbol: PFL_3718
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase (NAD) family protein; Identified by similarity to SP:Q59931; match to protein family HMM PF00171.


ensembl_gene_id: PFL_3720
symbol: moeA_1
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: PFL_3721
symbol: moaB_1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: PFL_3722
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: PFL_3724
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: PFL_3726
symbol: moaD-2
gene_biotype: protein_coding
description:
  Molybdopterin converting factor, subunit 1; Identified by similarity to SP:P30748; match to protein family HMM PF02597; match to protein family HMM TIGR01682.


ensembl_gene_id: PFL_3728
symbol: PFL_3728
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:Q98E66; match to protein family HMM PF05249.


ensembl_gene_id: PFL_3730
symbol: PFL_3730
gene_biotype: protein_coding
description:
  Oxidoreductase alpha (molybdopterin) subunit; Identified by similarity to SP:P77561; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: PFL_3731
symbol: cydA_1
gene_biotype: protein_coding
description:
  Cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to GB:CAA71555.1; match to protein family HMM PF01654.


ensembl_gene_id: PFL_3732
symbol: cydB_1
gene_biotype: protein_coding
description:
  Cytochrome d ubiquinol oxidase, subunit II; Identified by similarity to GB:CAA71556.1; match to protein family HMM PF02322; match to protein family HMM TIGR00203.


ensembl_gene_id: PFL_3735
symbol: ydeP
gene_biotype: protein_coding
description:
  Acid resistance protein YdeP; Identified by similarity to SP:P77561; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: PFL_3738
symbol: PFL_3738
gene_biotype: protein_coding
description:
  Membrane protein, YccA family; Identified by similarity to SP:P0AAC6; match to protein family HMM PF01027; Belongs to the BI1 family.


ensembl_gene_id: PFL_3745
symbol: PFL_3745
gene_biotype: protein_coding
description:
  Putative bacteriophage lambda tail assembly protein I; Identified by match to protein family HMM PF06805.


ensembl_gene_id: PFL_3750
symbol: PFL_3750
gene_biotype: protein_coding
description:
  Phage minor tail protein L; Identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600.


ensembl_gene_id: PFL_3753
symbol: PFL_3753
gene_biotype: protein_coding
description:
  Phage tail tape measure protein, lambda family; Identified by match to protein family HMM PF09718; match to protein family HMM TIGR01541.


ensembl_gene_id: PFL_3754
symbol: PFL_3754
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAP49960.1; match to protein family HMM PF08748.


ensembl_gene_id: PFL_3764
symbol: PFL_3764
gene_biotype: protein_coding
description:
  Phage head morphogenesis protein, SPP1 gp7 family; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.


ensembl_gene_id: PFL_3770
symbol: PFL_3770
gene_biotype: protein_coding
description:
  Phage holin, lambda family; Identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594.


ensembl_gene_id: PFL_3780
symbol: PFL_3780
gene_biotype: protein_coding
description:
  Transcriptional regulator, Cro/CI family; Identified by similarity to SP:Q06553; match to protein family HMM PF00717.


ensembl_gene_id: PFL_3802
symbol: pseH
gene_biotype: protein_coding
description:
  Pseudaminic acid biosynthesis N-acetyl transferase; Identified by match to protein family HMM PF00583; match to protein family HMM TIGR03585.


ensembl_gene_id: PFL_3803
symbol: PFL_3803
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF05899; match to protein family HMM PF07883; match to protein family HMM TIGR03214.


ensembl_gene_id: PFL_3806
symbol: rpmJ
gene_biotype: protein_coding
description:
  Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: PFL_3809
symbol: PFL_3809
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF03447.


ensembl_gene_id: PFL_3811
symbol: PFL_3811
gene_biotype: protein_coding
description:
  Putative threonine synthase; Identified by similarity to GB:CAA82670.1; match to protein family HMM PF00291.


ensembl_gene_id: PFL_3814
symbol: mdeA
gene_biotype: protein_coding
description:
  Methionine gamma-lyase; Identified by similarity to GB:CAA04124.1; match to protein family HMM PF01053; match to protein family HMM PF01212.


ensembl_gene_id: PFL_3821
symbol: PFL_3821
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF08332; match to protein family HMM TIGR02246.


ensembl_gene_id: PFL_3822
symbol: PFL_3822
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by similarity to SP:P09835; match to protein family HMM PF02518; match to protein family HMM PF07730.


ensembl_gene_id: PFL_3824
symbol: PFL_3824
gene_biotype: protein_coding
description:
  Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_3826
symbol: PFL_3826
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883.


ensembl_gene_id: PFL_3831
symbol: yneI
gene_biotype: protein_coding
description:
  Succinate semialdehyde dehydrogenase, NAD+-dependent; Identified by similarity to SP:P76149; match to protein family HMM PF00171.


ensembl_gene_id: PFL_3836
symbol: PFL_3836
gene_biotype: protein_coding
description:
  Oxidoreductase, FAD-dependent; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.


ensembl_gene_id: PFL_3843
symbol: PFL_3843
gene_biotype: protein_coding
description:
  MazG nucleotide pyrophosphohydrolase domain protein; Identified by match to protein family HMM PF03819.


ensembl_gene_id: PFL_3852
symbol: PFL_3852
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Identified by similarity to SP:P52076; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_3853
symbol: PFL_3853
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by similarity to SP:P40719; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_3855
symbol: xylL
gene_biotype: protein_coding
description:
  1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Identified by similarity to SP:P23102; match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_3856
symbol: xylZ
gene_biotype: protein_coding
description:
  Toluate 1,2-dioxygenase electron transfer component; Identified by similarity to SP:P23101; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08021.


ensembl_gene_id: PFL_3857
symbol: xylY
gene_biotype: protein_coding
description:
  Toluate 1,2-dioxygenase subunit beta; Identified by similarity to SP:P23100; match to protein family HMM PF00866; match to protein family HMM TIGR03232.


ensembl_gene_id: PFL_3858
symbol: xylX
gene_biotype: protein_coding
description:
  Toluate 1,2-dioxygenase subunit alpha; Identified by similarity to SP:P23099; match to protein family HMM PF00355; match to protein family HMM PF00848; match to protein family HMM TIGR03229.


ensembl_gene_id: PFL_3859
symbol: benR
gene_biotype: protein_coding
description:
  Transcriptional regulator BenR; Identified by similarity to GB:AAF63447.1; match to protein family HMM PF02311.


ensembl_gene_id: PFL_3860
symbol: catA
gene_biotype: protein_coding
description:
  Catechol 1,2-dioxygenase; Identified by similarity to SP:P07773; match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439.


ensembl_gene_id: PFL_3861
symbol: catC
gene_biotype: protein_coding
description:
  Muconolactone delta-isomerase; Identified by similarity to SP:P00948; match to protein family HMM PF02426; match to protein family HMM TIGR03221; Belongs to the muconolactone Delta-isomerase family.


ensembl_gene_id: PFL_3862
symbol: catB
gene_biotype: protein_coding
description:
  Muconate cycloisomerase; Identified by similarity to SP:P08310; match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: PFL_3863
symbol: catR
gene_biotype: protein_coding
description:
  Transcriptional activator CatR; Identified by similarity to SP:P20667; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_3868
symbol: PFL_3868
gene_biotype: protein_coding
description:
  Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.


ensembl_gene_id: PFL_3869
symbol: tusD
gene_biotype: protein_coding
description:
  Sulfur relay protein TusD; Identified by similarity to SP:P45532; match to protein family HMM PF02635; match to protein family HMM TIGR03012.


ensembl_gene_id: PFL_3870
symbol: tusC
gene_biotype: protein_coding
description:
  Sulfur relay protein TusC; Identified by match to protein family HMM PF02635; match to protein family HMM TIGR03010; Belongs to the DsrF/TusC family.


ensembl_gene_id: PFL_3871
symbol: tusB
gene_biotype: protein_coding
description:
  Sulfur relay protein TusB; Identified by similarity to GB:AAM72093.1; match to protein family HMM PF04077; match to protein family HMM TIGR03011.


ensembl_gene_id: PFL_3874
symbol: PFL_3874
gene_biotype: protein_coding
description:
  Glutathione S-transferase, C-terminal domain protein; Identified by match to protein family HMM PF00043.


ensembl_gene_id: PFL_3875
symbol: cobA
gene_biotype: protein_coding
description:
  Siroheme synthase/uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.


ensembl_gene_id: PFL_3876
symbol: serS
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: PFL_3877
symbol: crcB
gene_biotype: protein_coding
description:
  Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: PFL_3879
symbol: lolA
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: PFL_3880
symbol: ftsK
gene_biotype: protein_coding
description:
  DNA translocase FtsK; Identified by similarity to SP:P46889; match to protein family HMM PF01580; match to protein family HMM PF09397.


ensembl_gene_id: PFL_3882
symbol: aat
gene_biotype: protein_coding
description:
  Leucyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: PFL_3883
symbol: bpt
gene_biotype: protein_coding
description:
  arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: PFL_3884
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: PFL_3885
symbol: clpA
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpA; Identified by similarity to SP:P0ABH9; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PFL_3886
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: PFL_3887
symbol: cspD
gene_biotype: protein_coding
description:
  Cold shock domain protein CspD; Identified by similarity to SP:P24245; match to protein family HMM PF00313; match to protein family HMM TIGR02381.


ensembl_gene_id: PFL_3888
symbol: icd_1
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase, NADP-dependent; Identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183.


ensembl_gene_id: PFL_3889
symbol: icd_2
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase, NADP-dependent; Identified by similarity to SP:P16100; match to protein family HMM PF03971; match to protein family HMM TIGR00178; Belongs to the monomeric-type IDH family.


ensembl_gene_id: PFL_3890
symbol: nudJ
gene_biotype: protein_coding
description:
  Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family. NudJ subfamily.


ensembl_gene_id: PFL_3891
symbol: trmU
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: PFL_3893
symbol: purB
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Identified by similarity to SP:P25739; match to protein family HMM PF00206; match to protein family HMM PF08328; match to protein family HMM TIGR00928; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: PFL_3896
symbol: PFL_3896
gene_biotype: protein_coding
description:
  Type II/III secretion system short domain protein; Identified by match to protein family HMM PF03958.


ensembl_gene_id: PFL_3897
symbol: aceA
gene_biotype: protein_coding
description:
  Isocitrate lyase; Identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346.


ensembl_gene_id: PFL_3898
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PFL_3899
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, C/D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: PFL_3900
symbol: nuoE
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, E subunit; Identified by similarity to SP:P33601; match to protein family HMM PF01257; match to protein family HMM TIGR01958.


ensembl_gene_id: PFL_3901
symbol: nuoF
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: PFL_3902
symbol: nuoG
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: PFL_3903
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, H subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: PFL_3904
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PFL_3905
symbol: nuoJ
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, J subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: PFL_3906
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, K subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: PFL_3907
symbol: nuoL
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, L subunit; Identified by similarity to SP:P33607; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974.


ensembl_gene_id: PFL_3908
symbol: nuoM
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, M subunit; Identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972.


ensembl_gene_id: PFL_3909
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, N subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: PFL_3912
symbol: cysS
gene_biotype: protein_coding
description:
  cysteine--tRNA ligase; Identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PFL_3913
symbol: glnS
gene_biotype: protein_coding
description:
  glutamine--tRNA ligase; Identified by similarity to SP:P00962; match to protein family HMM PF00749; match to protein family HMM PF03950; match to protein family HMM TIGR00440.


ensembl_gene_id: PFL_3914
symbol: ppiB
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: PFL_3915
symbol: lpxH
gene_biotype: protein_coding
description:
  UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: PFL_3916
symbol: emrB
gene_biotype: protein_coding
description:
  Identified by similarity to SP:P0AEJ0; match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.


ensembl_gene_id: PFL_3919
symbol: PFL_3919
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; Identified by similarity to SP:P27245; match to protein family HMM PF01047.


ensembl_gene_id: PFL_3921
symbol: PFL_3921
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by similarity to SP:P14376; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.


ensembl_gene_id: PFL_3926
symbol: PFL_3926
gene_biotype: protein_coding
description:
  Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.


ensembl_gene_id: PFL_3928
symbol: xth
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.


ensembl_gene_id: PFL_3933
symbol: liuR
gene_biotype: protein_coding
description:
  Leucine/isovalerate utilization transcriptional regulator LiuR; Identified by similarity to GB:AAG05404.1; match to protein family HMM PF00376; match to protein family HMM PF09278.


ensembl_gene_id: PFL_3934
symbol: liuE
gene_biotype: protein_coding
description:
  hydroxymethylglutaryl-CoA lyase LiuE; Identified by similarity to GB:AAG05399.1; match to protein family HMM PF00682.


ensembl_gene_id: PFL_3935
symbol: acs
gene_biotype: protein_coding
description:
  long-chain-fatty-acid--CoA ligase; Identified by similarity to GB:ABR57200.1; match to protein family HMM PF00501.


ensembl_gene_id: PFL_3936
symbol: liuA
gene_biotype: protein_coding
description:
  isovaleryl-CoA dehydrogenase LiuA; Identified by similarity to GB:AAG05403.1; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: PFL_3937
symbol: liuB
gene_biotype: protein_coding
description:
  methylcrotonyl-CoA carboxylase, beta subunit LiuB; Identified by similarity to GB:AAG05402.1; match to protein family HMM PF01039.


ensembl_gene_id: PFL_3938
symbol: liuC
gene_biotype: protein_coding
description:
  Putative 3-methylglutaconyl-CoA hydratase LiuC; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: PFL_3939
symbol: liuD
gene_biotype: protein_coding
description:
  methylcrotonyl-CoA carboxylase, alpha-subunit LiuD; Identified by similarity to GB:AAG05400.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786.


ensembl_gene_id: PFL_3940
symbol: PFL_3940
gene_biotype: protein_coding
description:
  Transcriptional regulator, Cro/CI family; Identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381.


ensembl_gene_id: PFL_3946
symbol: PFL_3946
gene_biotype: protein_coding
description:
  Putative catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.


ensembl_gene_id: PFL_3947
symbol: prtI
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor, ECF subfamily, PrtI; Identified by similarity to GB:AAF81074.1; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_3949
symbol: PFL_3949
gene_biotype: protein_coding
description:
  Putative type I pilus protein CsuE; Identified by similarity to GB:AAP43040.1; match to protein family HMM PF05229.


ensembl_gene_id: PFL_3950
symbol: PFL_3950
gene_biotype: protein_coding
description:
  Putative type I pili usher protein CsuD; Identified by similarity to GB:AAP43039.1; match to protein family HMM PF00577.


ensembl_gene_id: PFL_3952
symbol: PFL_3952
gene_biotype: protein_coding
description:
  Putative type I pilus protein CsuB; Identified by similarity to GB:AAP43037.1; match to protein family HMM PF05229.


ensembl_gene_id: PFL_3953
symbol: PFL_3953
gene_biotype: protein_coding
description:
  Putative type I pilus protein CsuA/B; Identified by similarity to GB:AAP43035.1; match to protein family HMM PF05229.


ensembl_gene_id: PFL_3960
symbol: PFL_3960
gene_biotype: protein_coding
description:
  DNA-binding regulatory protein, YebC/PmpR family; Identified by match to protein family HMM PF01709.


ensembl_gene_id: PFL_3961
symbol: PFL_3961
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC61588.1; match to protein family HMM PF01266; match to protein family HMM TIGR03329.


ensembl_gene_id: PFL_3963
symbol: PFL_3963
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR03339; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_3965
symbol: phnW
gene_biotype: protein_coding
description:
  2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.


ensembl_gene_id: PFL_3966
symbol: phnX
gene_biotype: protein_coding
description:
  Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.


ensembl_gene_id: PFL_3969
symbol: fadH
gene_biotype: protein_coding
description:
  2,4-dienoyl-CoA reductase; Identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992.


ensembl_gene_id: PFL_3983
symbol: PFL_3983
gene_biotype: protein_coding
description:
  PpiC-type peptidyl-prolyl cis-trans isomerase domain protein; Identified by match to protein family HMM PF00639; match to protein family HMM PF09312.


ensembl_gene_id: PFL_3984
symbol: hupB
gene_biotype: protein_coding
description:
  DNA-binding protein HU, beta subunit; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: PFL_3985
symbol: lon_1
gene_biotype: protein_coding
description:
  Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: PFL_3986
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: PFL_3987
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: PFL_3988
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: PFL_3992
symbol: folD
gene_biotype: protein_coding
description:
  Bifunctional protein FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: PFL_3993
symbol: pbpG
gene_biotype: protein_coding
description:
  D-alanyl-D-alanine endopeptidase; Identified by similarity to SP:P0AFI5; match to protein family HMM PF00768; Belongs to the peptidase S11 family.


ensembl_gene_id: PFL_3998
symbol: nhaR
gene_biotype: protein_coding
description:
  Transcriptional activator protein NhaR; Identified by similarity to SP:P0A9G2; match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_4000
symbol: sstT
gene_biotype: protein_coding
description:
  Serine/threonine transporter SstT; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: PFL_4004
symbol: PFL_4004
gene_biotype: protein_coding
description:
  Protein of unknown function, DUF480 family; Identified by match to protein family HMM PF04337; Belongs to the UPF0502 family.


ensembl_gene_id: PFL_4005
symbol: PFL_4005
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase/quinate 5-dehydrogenase family protein; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501.


ensembl_gene_id: PFL_4014
symbol: PFL_4014
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_4019
symbol: queD
gene_biotype: protein_coding
description:
  Queuosine biosynthesis protein QueD; Identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367.


ensembl_gene_id: PFL_4024
symbol: PFL_4024
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein; Identified by similarity to SP:P76128; match to protein family HMM PF00496.


ensembl_gene_id: PFL_4025
symbol: PFL_4025
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P0AEF8; match to protein family HMM PF00528.


ensembl_gene_id: PFL_4026
symbol: PFL_4026
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P77463; match to protein family HMM PF00528.


ensembl_gene_id: PFL_4027
symbol: PFL_4027
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P77268; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_4028
symbol: PFL_4028
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P77622; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_4032
symbol: codB
gene_biotype: protein_coding
description:
  Putative cytosine permease; Identified by similarity to SP:P0AA82; match to protein family HMM PF02133.


ensembl_gene_id: PFL_4033
symbol: codA
gene_biotype: protein_coding
description:
  Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969.


ensembl_gene_id: PFL_4039
symbol: PFL_4039
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferric citrate receptor; Transducer; identified by similarity to SP:P13036; match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_4040
symbol: PFL_4040
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to GB:AAX16348.1; match to protein family HMM PF04773.


ensembl_gene_id: PFL_4046
symbol: PFL_4046
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by similarity to SP:P76241; match to protein family HMM PF00165.


ensembl_gene_id: PFL_4053
symbol: ampR
gene_biotype: protein_coding
description:
  Transcriptional activator AmpR; Identified by similarity to SP:P24734; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_4055
symbol: pcs
gene_biotype: protein_coding
description:
  Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PFL_4065
symbol: ndvB
gene_biotype: protein_coding
description:
  NdvB protein; Identified by similarity to SP:P20471; match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205.


ensembl_gene_id: PFL_4068
symbol: adh
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase, zinc-dependent; Identified by similarity to SP:P14940; match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: PFL_4069
symbol: PFL_4069
gene_biotype: protein_coding
description:
  Drug resistance transporter, Bcr/CflA family protein; Identified by match to protein family HMM PF07690.


ensembl_gene_id: PFL_4075
symbol: dkgB
gene_biotype: protein_coding
description:
  2,5-diketo-D-gluconic acid reductase B; Identified by similarity to SP:P30863; match to protein family HMM PF00248.


ensembl_gene_id: PFL_4080
symbol: fpvI
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor, ECF subfamily, FpvI; See Beare et. al. 2003 (PMID: 12492864); identified by similarity to GB:AAG05775.1; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_4081
symbol: PFL_4081
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; Identified by similarity to GB:AAX16332.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_4082
symbol: macB2
gene_biotype: protein_coding
description:
  Efflux ABC transporter, ATP-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.


ensembl_gene_id: PFL_4086
symbol: pvdP
gene_biotype: protein_coding
description:
  Chromophore maturation protein PvdP; See Yeterian et. al. 2010 (PMID: 19787431) for more information on the chromophore maturation; identified by similarity to GB:AAG05780.1.


ensembl_gene_id: PFL_4087
symbol: pvdM
gene_biotype: protein_coding
description:
  Putative dipeptidase precursor; Identified by similarity to GB:AAG05781.1; match to protein family HMM PF01244.


ensembl_gene_id: PFL_4088
symbol: pvdN
gene_biotype: protein_coding
description:
  Chromophore maturation protein PvdN; See Yeterian et. al. 2010 (PMID: 19787431) for more information on the chromophore maturation; identified by similarity to GB:AAG05782.1; match to protein family HMM PF00266; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_4089
symbol: pvdO
gene_biotype: protein_coding
description:
  Chromophore maturation protein PvdO; See Yeterian et. al. 2010 (PMID: 19787431) for more information on the chromophore maturation; identified by similarity to GB:AAG05783.1; match to protein family HMM PF03781.


ensembl_gene_id: PFL_4090
symbol: pvdF
gene_biotype: protein_coding
description:
  N(5)-hydroxyornithine transformylase PvdF; See PMID: 11390682; identified by similarity to GB:AAG05784.1.


ensembl_gene_id: PFL_4091
symbol: pvdE
gene_biotype: protein_coding
description:
  Pyoverdine ABC transporter, permease/ATP-binding protein PvdE; Identified by similarity to GB:AAG05785.1; match to protein family HMM PF00005; match to protein family HMM TIGR01194.


ensembl_gene_id: PFL_4092
symbol: fpvA
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferripyoverdine receptor FpvA; Transducer; identified by similarity to SP:P48632; match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_4093
symbol: pvdD
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthetase PvdD; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_4094
symbol: pvdJ
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthetase PvdJ; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_4095
symbol: pvdI
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthetase PvdI; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_4096
symbol: PFL_4096
gene_biotype: protein_coding
description:
  Identified by similarity to GB:AAX16342.1; match to protein family HMM PF04954; match to protein family HMM PF08021.


ensembl_gene_id: PFL_4100
symbol: gdh
gene_biotype: protein_coding
description:
  Glucose 1-dehydrogenase; Identified by similarity to SP:P12310; match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: PFL_4106
symbol: PFL_4106
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF08338; match to protein family HMM TIGR01777.


ensembl_gene_id: PFL_4108
symbol: PFL_4108
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by similarity to GB:AAN18035.1; match to protein family HMM PF00165; match to protein family HMM PF01965.


ensembl_gene_id: PFL_4109
symbol: inhA
gene_biotype: protein_coding
description:
  Isonitrile hydratase InhA; Identified by similarity to GB:BAC41251.1; match to protein family HMM PF01965.


ensembl_gene_id: PFL_4112
symbol: PFL_4112
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family/aminotransferase, classes I and II family protein; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392; match to protein family HMM PF01212.


ensembl_gene_id: PFL_4113
symbol: str
gene_biotype: protein_coding
description:
  Streptomycin 3''-kinase; Identified by similarity to SP:P13082; match to protein family HMM PF04655.


ensembl_gene_id: PFL_4116
symbol: PFL_4116
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAN18026.1; match to protein family HMM PF07007.


ensembl_gene_id: PFL_4117
symbol: peaD
gene_biotype: protein_coding
description:
  Quinohemoprotein amine dehydrogenase, beta subunit PeaD; Identified by similarity to GB:ABR57201.1; similarity to GB:BAB72011.1; match to protein family HMM TIGR03907.


ensembl_gene_id: PFL_4118
symbol: peaC
gene_biotype: protein_coding
description:
  Quinohemoprotein amine dehydrogenase, gamma subunit PeaC; Identified by similarity to GB:ABR57202.1; similarity to GB:BAB72010.1; match to protein family HMM PF08992.


ensembl_gene_id: PFL_4119
symbol: peaB
gene_biotype: protein_coding
description:
  Putative quinohemoprotein amine dehydrogenase modification protein PeaB; Identified by similarity to GB:ABR57203.1; match to protein family HMM PF04055; match to protein family HMM TIGR03906.


ensembl_gene_id: PFL_4120
symbol: peaA
gene_biotype: protein_coding
description:
  Quinohemoprotein amine dehydrogenase, alpha subunit PeaA; Identified by similarity to GB:ABR57204.1; similarity to GB:BAB72008.1; match to protein family HMM PF09098; match to protein family HMM PF09099; match to protein family HMM PF09100; match to protein family HMM TIGR03908.


ensembl_gene_id: PFL_4123
symbol: leuA-2
gene_biotype: protein_coding
description:
  Putative 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: PFL_4126
symbol: PFL_4126
gene_biotype: protein_coding
description:
  Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_4130
symbol: peaE
gene_biotype: protein_coding
description:
  Phenylacetaldehyde dehydrogenase PeaE; Identified by similarity to GB:ABR57205.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_4134
symbol: peaH
gene_biotype: protein_coding
description:
  2-phenylethylamine uptake protein PeaH; Identified by similarity to GB:ABR57210.1; match to protein family HMM PF00005; match to protein family HMM PF00664.


ensembl_gene_id: PFL_4135
symbol: peaR
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional activator PeaR; Identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728.


ensembl_gene_id: PFL_4140
symbol: mrdA_1
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.


ensembl_gene_id: PFL_4151
symbol: PFL_4151
gene_biotype: protein_coding
description:
  Peptidase, M24 family; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321.


ensembl_gene_id: PFL_4152
symbol: PFL_4152
gene_biotype: protein_coding
description:
  Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.


ensembl_gene_id: PFL_4155
symbol: msuE
gene_biotype: protein_coding
description:
  NADH-dependent FMN reductase; Identified by similarity to SP:O31038; match to protein family HMM PF03358; match to protein family HMM TIGR03566.


ensembl_gene_id: PFL_4156
symbol: msuD
gene_biotype: protein_coding
description:
  Methanesulfonate sulfonatase MsuD; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.


ensembl_gene_id: PFL_4157
symbol: msuC
gene_biotype: protein_coding
description:
  Putative monooxygenase MsuC; Identified by similarity to GB:AAB82565.1; match to protein family HMM PF00441; match to protein family HMM PF08028.


ensembl_gene_id: PFL_4160
symbol: soxR
gene_biotype: protein_coding
description:
  Redox-sensitive transcriptional activator SoxR; Identified by similarity to SP:P22538; match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR01950.


ensembl_gene_id: PFL_4167
symbol: PFL_4167
gene_biotype: protein_coding
description:
  Monooxygenase, DszC family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; match to protein family HMM TIGR04022.


ensembl_gene_id: PFL_4169
symbol: PFL_4169
gene_biotype: protein_coding
description:
  PepSY-associated TM helix domain protein; Identified by match to protein family HMM PF03413; match to protein family HMM PF03929.


ensembl_gene_id: PFL_4173
symbol: PFL_4173
gene_biotype: protein_coding
description:
  Cation ABC transporter, MZT family, periplasmic cation-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: PFL_4174
symbol: PFL_4174
gene_biotype: protein_coding
description:
  Cation ABC transporter, MZT family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: PFL_4175
symbol: PFL_4175
gene_biotype: protein_coding
description:
  Cation ABC transporter, MZT family, permease protein; Identified by match to protein family HMM PF00950.


ensembl_gene_id: PFL_4177
symbol: PFL_4177
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_4179
symbol: pvdH
gene_biotype: protein_coding
description:
  2,4-diaminobutyrate 4-transaminase; Identified by similarity to SP:P56744; similarity to GB:AAG05801.1; match to protein family HMM PF00202; match to protein family HMM TIGR00709; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PFL_4182
symbol: dsbD
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily.


ensembl_gene_id: PFL_4183
symbol: PFL_4183
gene_biotype: protein_coding
description:
  Antioxidant, AhpC family; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.


ensembl_gene_id: PFL_4184
symbol: dsbG
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein DsbG; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: PFL_4189
symbol: pvdL
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthetase PvdL; Identified by similarity to GB:AAG05812.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF03007; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.


ensembl_gene_id: PFL_4190
symbol: pvdS
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor, ECF subfamily, PvdS; Identified by similarity to GB:AAG05814.1; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_4191
symbol: pvdY
gene_biotype: protein_coding
description:
  Pyoverdine biosynthesis protein; See Smith et al. 2005 (PMID: 15743962); identified by similarity to GB:AAX10122.1.


ensembl_gene_id: PFL_4193
symbol: pfiT/atuR
gene_biotype: protein_coding
description:
  Transcriptional regulator I2; Identified by similarity to GB:AAG06273.1; similarity to GB:AAK16600.1; match to protein family HMM PF00440.


ensembl_gene_id: PFL_4194
symbol: atuA
gene_biotype: protein_coding
description:
  Acyclic terpene utilization protein AtuA; Identified by similarity to GB:AAG06274.1; similarity to GB:ABC69240.1; match to protein family HMM PF07287.


ensembl_gene_id: PFL_4195
symbol: atuB
gene_biotype: protein_coding
description:
  Putative citronellol/citronellal dehydrogenase AtuB; Identified by similarity to GB:AAG06275.1; similarity to GB:ABC69241.1; match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: PFL_4196
symbol: atuC
gene_biotype: protein_coding
description:
  geranyl-CoA carboxylase, beta subunit AtuC; Identified by similarity to GB:ABC69242.1; match to protein family HMM PF01039.


ensembl_gene_id: PFL_4197
symbol: atuD
gene_biotype: protein_coding
description:
  Putative citronellyl-CoA dehydrogenase AtuD; Identified by similarity to GB:AAG06277.1; similarity to GB:ABC69243.1; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: PFL_4198
symbol: atuE
gene_biotype: protein_coding
description:
  Putative isohexenylglutaconyl-CoA hydratase AtuE; Identified by similarity to GB:AAG06278.1; match to protein family HMM PF00378.


ensembl_gene_id: PFL_4199
symbol: atuF
gene_biotype: protein_coding
description:
  geranyl-CoA carboxylase, alpha subunit AtuF; Identified by similarity to GB:AAG06279.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786.


ensembl_gene_id: PFL_4201
symbol: ppnP
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.


ensembl_gene_id: PFL_4202
symbol: ycbX
gene_biotype: protein_coding
description:
  Putative N-hydroxylated base analog detoxification protein YcbX; Identified by similarity to SP:P75863; match to protein family HMM PF03473; match to protein family HMM PF03476.


ensembl_gene_id: PFL_4205
symbol: PFL_4205
gene_biotype: protein_coding
description:
  Putative sensor histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.


ensembl_gene_id: PFL_4206
symbol: PFL_4206
gene_biotype: protein_coding
description:
  DNA-binding response regulator, LuxR family; Identified by similarity to SP:P13800; match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: PFL_4207
symbol: PFL_4207
gene_biotype: protein_coding
description:
  Lipid kinase, YegS/Rv2252/BmrU family; Probably phosphorylates lipids; the in vivo substrate is unknown.


ensembl_gene_id: PFL_4208
symbol: pslA
gene_biotype: protein_coding
description:
  Putative glycosyltransferase PslA; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05619.1; match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025.


ensembl_gene_id: PFL_4209
symbol: pslB
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase PslB; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAC61851.1; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.


ensembl_gene_id: PFL_4210
symbol: pslD
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis/export protein PslD; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05622.1; match to protein family HMM PF02563.


ensembl_gene_id: PFL_4211
symbol: pslE
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis/export protein PslE; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05623.1; match to protein family HMM PF02706.


ensembl_gene_id: PFL_4212
symbol: pslF
gene_biotype: protein_coding
description:
  Putative glycosyltransferase PslF; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05624.1; match to protein family HMM PF00534.


ensembl_gene_id: PFL_4213
symbol: pslG
gene_biotype: protein_coding
description:
  Putative glycosyl hydrolase PslG; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05625.1; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: PFL_4214
symbol: pslH
gene_biotype: protein_coding
description:
  Putative glycosyltransferase PslH; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05626.1; match to protein family HMM PF00534.


ensembl_gene_id: PFL_4215
symbol: pslI
gene_biotype: protein_coding
description:
  Putative glycosyltransferase PslI; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05627.1; match to protein family HMM PF00534.


ensembl_gene_id: PFL_4216
symbol: pslJ
gene_biotype: protein_coding
description:
  Membrane protein PslJ; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05628.1.


ensembl_gene_id: PFL_4218
symbol: pslK
gene_biotype: protein_coding
description:
  Membrane protein PslK; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05629.1; match to protein family HMM PF03023.


ensembl_gene_id: PFL_4219
symbol: pslC
gene_biotype: protein_coding
description:
  Putative glycosyltransferase PslC; Identified by similarity to GB:AAG05621.1; match to protein family HMM PF00535.


ensembl_gene_id: PFL_4229
symbol: PFL_4229
gene_biotype: protein_coding
description:
  Transporter, CPA2 family; Identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: PFL_4238
symbol: PFL_4238
gene_biotype: protein_coding
description:
  DNA-binding response regulator, LuxR family; Identified by similarity to SP:P16574; match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: PFL_4246
symbol: msrB
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase; Identified by similarity to SP:P39903; match to protein family HMM PF01641; match to protein family HMM TIGR00357; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: PFL_4248
symbol: htpX
gene_biotype: protein_coding
description:
  Heat shock protein HtpX; Identified by similarity to SP:P23894; match to protein family HMM PF01435; match to protein family HMM PF06509; Belongs to the peptidase M48B family.


ensembl_gene_id: PFL_4249
symbol: tpm
gene_biotype: protein_coding
description:
  Thiopurine S-methyltransferase; Identified by similarity to SP:O86262; match to protein family HMM PF05724; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.


ensembl_gene_id: PFL_4250
symbol: PFL_4250
gene_biotype: protein_coding
description:
  Catalytic LigB subunit of aromatic ring-opening dioxygenase; Identified by match to protein family HMM PF02900.


ensembl_gene_id: PFL_4251
symbol: deaD
gene_biotype: protein_coding
description:
  Cold-shock DEAD box protein A; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.


ensembl_gene_id: PFL_4254
symbol: PFL_4254
gene_biotype: protein_coding
description:
  3-deoxy-7-phosphoheptulonate synthase; Identified by similarity to SP:P29976; match to protein family HMM PF01474; match to protein family HMM TIGR01358.


ensembl_gene_id: PFL_4262
symbol: ohrR
gene_biotype: protein_coding
description:
  Organic hydroperoxide resistance transcriptional regulator; Identified by similarity to SP:O34777; match to protein family HMM PF01047.


ensembl_gene_id: PFL_4263
symbol: ohr
gene_biotype: protein_coding
description:
  Organic hydroperoxide resistance protein; See Ochsner et. al. 2001 (PMID: 11133975) for characterization of ohr from P.a. PAO1 (PA2850); identified by similarity to GB:AAG06238.1; match to protein family HMM PF02566; match to protein family HMM TIGR03561.


ensembl_gene_id: PFL_4264
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: PFL_4268
symbol: cysB
gene_biotype: protein_coding
description:
  HTH-type transcriptional regulator CysB; Identified by similarity to SP:P45600; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_4280
symbol: PFL_4280
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease protein; Identified by similarity to SP:P77504; match to protein family HMM PF02687.


ensembl_gene_id: PFL_4281
symbol: greB
gene_biotype: protein_coding
description:
  Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.


ensembl_gene_id: PFL_4293
symbol: kdpE_1
gene_biotype: protein_coding
description:
  KDP operon transcriptional regulatory protein KdpE; Identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_4294
symbol: kdpD_1
gene_biotype: protein_coding
description:
  Sensor histidine kinase KdpD; Identified by similarity to SP:P21865; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702.


ensembl_gene_id: PFL_4295
symbol: kdpC_1
gene_biotype: protein_coding
description:
  K+-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: PFL_4296
symbol: kdpB_1
gene_biotype: protein_coding
description:
  K+-transporting ATPase, B subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: PFL_4297
symbol: kdpA_1
gene_biotype: protein_coding
description:
  K+-transporting ATPase, A subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: PFL_4298
symbol: eat
gene_biotype: protein_coding
description:
  Ethanolamine permease; Identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908.


ensembl_gene_id: PFL_4304
symbol: PFL_4304
gene_biotype: protein_coding
description:
  Competence protein ComEA helix-hairpin-helix repeat protein; Identified by match to protein family HMM TIGR00426.


ensembl_gene_id: PFL_4305
symbol: wbpM
gene_biotype: protein_coding
description:
  Nucleotide sugar epimerase/dehydratase WbpM; Identified by similarity to GB:AAF72960.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: PFL_4306
symbol: wbpL
gene_biotype: protein_coding
description:
  Glycosyltransferase WbpL; Identified by similarity to GB:AAG06533.1; match to protein family HMM PF00953.


ensembl_gene_id: PFL_4307
symbol: wbpV
gene_biotype: protein_coding
description:
  Putative UDP-glucose 4-epimerase WbpV; Identified by similarity to GB:AAF23991.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: PFL_4308
symbol: rpsA
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: PFL_4309
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; Identified by similarity to SP:P23863; match to protein family HMM PF02224; match to protein family HMM TIGR00017.


ensembl_gene_id: PFL_4310
symbol: aroA
gene_biotype: protein_coding
description:
  Prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: PFL_4312
symbol: pheA
gene_biotype: protein_coding
description:
  Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P27603; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.


ensembl_gene_id: PFL_4313
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: PFL_4314
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: PFL_4315
symbol: mtnA
gene_biotype: protein_coding
description:
  S-methyl-5-thioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: PFL_4316
symbol: mtaD
gene_biotype: protein_coding
description:
  Amidohydrolase family protein; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.


ensembl_gene_id: PFL_4317
symbol: ubiG
gene_biotype: protein_coding
description:
  3-demethylubiquinone-9 3-O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: PFL_4318
symbol: gph_1
gene_biotype: protein_coding
description:
  Phosphoglycolate phosphatase; Identified by similarity to SP:P40852; match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.


ensembl_gene_id: PFL_4322
symbol: PFL_4322
gene_biotype: protein_coding
description:
  Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_4323
symbol: PFL_4323
gene_biotype: protein_coding
description:
  ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.


ensembl_gene_id: PFL_4326
symbol: bolA
gene_biotype: protein_coding
description:
  BolA-like protein; Identified by similarity to SP:P0ABE4; match to protein family HMM PF01722; Belongs to the BolA/IbaG family.


ensembl_gene_id: PFL_4329
symbol: PFL_4329
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by similarity to SP:P0AA75; match to protein family HMM PF00892.


ensembl_gene_id: PFL_4331
symbol: pap
gene_biotype: protein_coding
description:
  polyphosphate:AMP phosphotransferase; Identified by match to protein family HMM PF03976; match to protein family HMM TIGR03708.


ensembl_gene_id: PFL_4332
symbol: mnmC
gene_biotype: protein_coding
description:
  tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.


ensembl_gene_id: PFL_4333
symbol: asnB
gene_biotype: protein_coding
description:
  Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; match to protein family HMM TIGR03104.


ensembl_gene_id: PFL_4334
symbol: PFL_4334
gene_biotype: protein_coding
description:
  GNAT-family acetyltransferase TIGR03103; Identified by match to protein family HMM PF00583; match to protein family HMM PF08443; match to protein family HMM TIGR03103.


ensembl_gene_id: PFL_4335
symbol: PFL_4335
gene_biotype: protein_coding
description:
  Hydrolase, peptidase M42 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF05343; match to protein family HMM TIGR03106.


ensembl_gene_id: PFL_4336
symbol: PFL_4336
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:Q88M28; match to protein family HMM PF06794; Belongs to the UPF0270 family.


ensembl_gene_id: PFL_4338
symbol: PFL_4338
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_4344
symbol: PFL_4344
gene_biotype: protein_coding
description:
  Putative long-chain-fatty-acid--CoA ligase; Identified by similarity to SP:O14975; match to protein family HMM PF00501.


ensembl_gene_id: PFL_4346
symbol: mtnD
gene_biotype: protein_coding
description:
  ARD/ARD' family protein; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.


ensembl_gene_id: PFL_4347
symbol: PFL_4347
gene_biotype: protein_coding
description:
  Transporter, major facilitator family; Identified by match to protein family HMM PF03825; match to protein family HMM PF07690.


ensembl_gene_id: PFL_4348
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: PFL_4351
symbol: prmB
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.


ensembl_gene_id: PFL_4356
symbol: PFL_4356
gene_biotype: protein_coding
description:
  Glutaredoxin domain protein; Identified by match to protein family HMM PF00462; match to protein family HMM PF02798.


ensembl_gene_id: PFL_4359
symbol: PFL_4359
gene_biotype: protein_coding
description:
  Citrate transporter, CitN family; Identified by similarity to SP:P42308; match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; match to protein family HMM TIGR00784.


ensembl_gene_id: PFL_4366
symbol: PFL_4366
gene_biotype: protein_coding
description:
  Putative urate catabolism protein; Identified by match to protein family HMM PF01522; match to protein family HMM TIGR03212.


ensembl_gene_id: PFL_4367
symbol: uraD
gene_biotype: protein_coding
description:
  OHCU decarboxylase; Identified by similarity to SP:Q45697; match to protein family HMM PF09349; match to protein family HMM TIGR03164.


ensembl_gene_id: PFL_4368
symbol: alc
gene_biotype: protein_coding
description:
  Allantoicase; Identified by similarity to SP:Q9W6S5; match to protein family HMM PF03561; match to protein family HMM TIGR02961; match to protein family HMM TIGR03163; Belongs to the allantoicase family.


ensembl_gene_id: PFL_4369
symbol: allA
gene_biotype: protein_coding
description:
  Ureidoglycolate lyase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.


ensembl_gene_id: PFL_4375
symbol: PFL_4375
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08659.


ensembl_gene_id: PFL_4376
symbol: PFL_4376
gene_biotype: protein_coding
description:
  Outer membrane autotransporter; Identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414.


ensembl_gene_id: PFL_4378
symbol: htrB
gene_biotype: protein_coding
description:
  Lipid A biosynthesis lauroyl acyltransferase; Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)-(lauroyl)-lipid IV(A).


ensembl_gene_id: PFL_4379
symbol: minC
gene_biotype: protein_coding
description:
  Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: PFL_4380
symbol: minD
gene_biotype: protein_coding
description:
  Septum site-determining protein MinD; Identified by similarity to SP:P18197; match to protein family HMM PF01656; match to protein family HMM TIGR01968.


ensembl_gene_id: PFL_4381
symbol: minE
gene_biotype: protein_coding
description:
  Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.


ensembl_gene_id: PFL_4382
symbol: rluA
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase A; Identified by similarity to SP:P0AA37; match to protein family HMM PF00849.


ensembl_gene_id: PFL_4387
symbol: PFL_4387
gene_biotype: protein_coding
description:
  Putative ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF01547.


ensembl_gene_id: PFL_4391
symbol: PFL_4391
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_4392
symbol: PFL_4392
gene_biotype: protein_coding
description:
  HAD hydrolase, family IB; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490.


ensembl_gene_id: PFL_4393
symbol: PFL_4393
gene_biotype: protein_coding
description:
  NAD(P)H quinone oxidoreductase, PIG3 family; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02824.


ensembl_gene_id: PFL_4394
symbol: prc
gene_biotype: protein_coding
description:
  Peptidase, S41 family; Identified by similarity to SP:P23865; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.


ensembl_gene_id: PFL_4395
symbol: PFL_4395
gene_biotype: protein_coding
description:
  Cyclic diguanylate phosphodiesterase domain/CBS domain pair/diguanylate cyclase domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990.


ensembl_gene_id: PFL_4399
symbol: PFL_4399
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254; match to protein family HMM PF01346.


ensembl_gene_id: PFL_4406
symbol: rdgC
gene_biotype: protein_coding
description:
  Recombination-associated protein RdgC; May be involved in recombination; Belongs to the RdgC family.


ensembl_gene_id: PFL_4408
symbol: sugE_1
gene_biotype: protein_coding
description:
  Quaternary ammonium compound-resistance protein SugE; Identified by match to protein family HMM PF00893.


ensembl_gene_id: PFL_4409
symbol: PFL_4409
gene_biotype: protein_coding
description:
  Transporter, major facilitator family/acyltransferase; Identified by match to protein family HMM PF01553; match to protein family HMM PF07690.


ensembl_gene_id: PFL_4410
symbol: PFL_4410
gene_biotype: protein_coding
description:
  Putative C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.


ensembl_gene_id: PFL_4413
symbol: PFL_4413
gene_biotype: protein_coding
description:
  Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00474; match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: PFL_4422
symbol: cobS
gene_biotype: protein_coding
description:
  adenosylcobinamide-GDP ribazoletransferase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: PFL_4423
symbol: cobC
gene_biotype: protein_coding
description:
  Alpha-ribazole phosphatase; Identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162.


ensembl_gene_id: PFL_4424
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: PFL_4425
symbol: cobU
gene_biotype: protein_coding
description:
  Adenosylcobinamide kinase/adenosylcobinamidephosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.


ensembl_gene_id: PFL_4426
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: PFL_4427
symbol: cobC-2
gene_biotype: protein_coding
description:
  Threonine-phosphate decarboxylase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR01140.


ensembl_gene_id: PFL_4428
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: PFL_4429
symbol: bluB
gene_biotype: protein_coding
description:
  cob(II)yrinic acid a,c-diamide reductase; Identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476.


ensembl_gene_id: PFL_4430
symbol: cobB
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: PFL_4431
symbol: cobO
gene_biotype: protein_coding
description:
  cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.


ensembl_gene_id: PFL_4437
symbol: hda
gene_biotype: protein_coding
description:
  DnaA regulatory inactivator Hda; Identified by match to protein family HMM PF00308; match to protein family HMM TIGR03420; Belongs to the DnaA family. HdA subfamily.


ensembl_gene_id: PFL_4440
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Identified by similarity to SP:P08178; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878.


ensembl_gene_id: PFL_4441
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: PFL_4445
symbol: mazG
gene_biotype: protein_coding
description:
  Nucleoside triphosphate pyrophosphohydrolase; Identified by similarity to SP:P0AEY3; match to protein family HMM PF01503; match to protein family HMM PF03819; match to protein family HMM TIGR00444.


ensembl_gene_id: PFL_4446
symbol: relA
gene_biotype: protein_coding
description:
  GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: PFL_4447
symbol: rumA
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.


ensembl_gene_id: PFL_4448
symbol: cysM
gene_biotype: protein_coding
description:
  Cysteine synthase B; Identified by similarity to SP:P16703; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01138; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: PFL_4449
symbol: PFL_4449
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by similarity to SP:Q04804; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_4450
symbol: PFL_4450
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Identified by similarity to SP:Q04803; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_4451
symbol: gacS
gene_biotype: protein_coding
description:
  Sensor protein GacS; See Corbell and Loper 1995 (PMID:7592389) for more information; identified by similarity to SP:P48027; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.


ensembl_gene_id: PFL_4452
symbol: ldhA
gene_biotype: protein_coding
description:
  D-lactate dehydrogenase; Identified by similarity to SP:P52643; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: PFL_4456
symbol: arsC_1
gene_biotype: protein_coding
description:
  Arsenate reductase; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014.


ensembl_gene_id: PFL_4457
symbol: wrbA
gene_biotype: protein_coding
description:
  NAD(P)H:quinone oxidoreductase, type IV; Identified by match to protein family HMM PF00258; match to protein family HMM TIGR01755; Belongs to the WrbA family.


ensembl_gene_id: PFL_4463
symbol: ttcA
gene_biotype: protein_coding
description:
  Putative tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.


ensembl_gene_id: PFL_4464
symbol: PFL_4464
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:P0AD17; match to protein family HMM PF06930.


ensembl_gene_id: PFL_4465
symbol: sprT
gene_biotype: protein_coding
description:
  Metallopeptidase, SprT family; Identified by match to protein family HMM PF03926; Belongs to the SprT family.


ensembl_gene_id: PFL_4467
symbol: dctA
gene_biotype: protein_coding
description:
  Aerobic C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: PFL_4469
symbol: phoQ
gene_biotype: protein_coding
description:
  Sensor protein PhoQ; Identified by similarity to SP:P23837; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_4470
symbol: phoP
gene_biotype: protein_coding
description:
  DNA-binding response regulator PhoP; Identified by similarity to SP:P23836; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_4473
symbol: pcpS
gene_biotype: protein_coding
description:
  Multifunctional 4'-phosphopantetheinyl transferase PcpS; See PMID: 12381736 and PMID: 15073290 for more information; identified by similarity to GB:AAG04554.1; match to protein family HMM PF01648; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: PFL_4474
symbol: PFL_4474
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by similarity to SP:P18392; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_4475
symbol: PFL_4475
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Identified by similarity to SP:P52108; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_4476
symbol: PFL_4476
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: PFL_4477
symbol: flgE
gene_biotype: protein_coding
description:
  Flagellar hook protein FlgE; Identified by similarity to SP:P0A1J1; match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; match to protein family HMM TIGR03506.


ensembl_gene_id: PFL_4478
symbol: flgD
gene_biotype: protein_coding
description:
  Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: PFL_4479
symbol: flgC
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: PFL_4480
symbol: flgB
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: PFL_4481
symbol: PFL_4481
gene_biotype: protein_coding
description:
  Chemotaxis protein methyltransferase, CheR family; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.


ensembl_gene_id: PFL_4482
symbol: PFL_4482
gene_biotype: protein_coding
description:
  Response regulator receiver domain/CheW-like domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584.


ensembl_gene_id: PFL_4483
symbol: flgA
gene_biotype: protein_coding
description:
  Flagella basal body P-ring formation protein FlgA; Identified by similarity to SP:P40131; match to protein family HMM PF08666; match to protein family HMM TIGR03170.


ensembl_gene_id: PFL_4489
symbol: gpuR
gene_biotype: protein_coding
description:
  Transcriptional activator GpuR; See Nakada and Itoh 2005 (PMID: 16339950) for more information; identified by similarity to GB:AAG03678.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_4490
symbol: PFL_4490
gene_biotype: protein_coding
description:
  Putative sensor histidine kinase; Identified by similarity to SP:P35164; match to protein family HMM PF02518.


ensembl_gene_id: PFL_4491
symbol: PFL_4491
gene_biotype: protein_coding
description:
  Response regulator/TPR domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.


ensembl_gene_id: PFL_4498
symbol: algZ
gene_biotype: protein_coding
description:
  Alginate biosynthesis transcriptional activator AlgZ; Identified by similarity to GB:AAD55364.1; match to protein family HMM PF03869.


ensembl_gene_id: PFL_4504
symbol: rsmA
gene_biotype: protein_coding
description:
  Translational regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).


ensembl_gene_id: PFL_4505
symbol: lysC
gene_biotype: protein_coding
description:
  Aspartate kinase, monofunctional class; Identified by similarity to SP:P41398; match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657; Belongs to the aspartokinase family.


ensembl_gene_id: PFL_4506
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: PFL_4507
symbol: PFL_4507
gene_biotype: protein_coding
description:
  L-allo-threonine aldolase; Identified by similarity to SP:O07051; match to protein family HMM PF00155; match to protein family HMM PF01212.


ensembl_gene_id: PFL_4508
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family.


ensembl_gene_id: PFL_4509
symbol: astE
gene_biotype: protein_coding
description:
  Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.


ensembl_gene_id: PFL_4511
symbol: astB
gene_biotype: protein_coding
description:
  Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).


ensembl_gene_id: PFL_4512
symbol: astD
gene_biotype: protein_coding
description:
  Succinylglutamate-semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.


ensembl_gene_id: PFL_4513
symbol: astA-4
gene_biotype: protein_coding
description:
  Arginine N-succinyltransferase, beta subunit; Identified by similarity to SP:P76218; match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244.


ensembl_gene_id: PFL_4514
symbol: astA-5
gene_biotype: protein_coding
description:
  Arginine N-succinyltransferase, alpha subunit; Identified by similarity to SP:P80357; match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03245.


ensembl_gene_id: PFL_4515
symbol: argD-2
gene_biotype: protein_coding
description:
  Acetylornithine/succinyldiaminopimelate aminotransferase; Identified by similarity to SP:Q885K0; match to protein family HMM PF00202; match to protein family HMM TIGR00707; match to protein family HMM TIGR03246; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: PFL_4516
symbol: argR
gene_biotype: protein_coding
description:
  Arginine pathway regulatory protein ArgR; Identified by similarity to GB:AAL35898.1; match to protein family HMM PF00165.


ensembl_gene_id: PFL_4517
symbol: aotP
gene_biotype: protein_coding
description:
  Arginine/ornithine ABC transporter, ATP-binding protein AotP; Identified by similarity to SP:O30506; match to protein family HMM PF00005.


ensembl_gene_id: PFL_4519
symbol: aotM
gene_biotype: protein_coding
description:
  Arginine/ornithine ABC transporter, permease protein AotM; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_4520
symbol: aotQ
gene_biotype: protein_coding
description:
  Arginine/ornithine ABC transporter, permease protein AotQ; Identified by similarity to GB:AAC71071.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_4521
symbol: aotJ
gene_biotype: protein_coding
description:
  Arginine/ornithine ABC transporter, periplasmic arginine/ornithine-binding protein AotJ; Identified by similarity to GB:AAG04277.1; match to protein family HMM PF00497; match to protein family HMM TIGR01096.


ensembl_gene_id: PFL_4522
symbol: acsA_1
gene_biotype: protein_coding
description:
  acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: PFL_4524
symbol: PFL_4524
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: PFL_4532
symbol: PFL_4532
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein, AdrA family; Identified by match to protein family HMM PF00990; match to protein family HMM PF05230; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_4533
symbol: bdlA
gene_biotype: protein_coding
description:
  Biofilm dispersion protein BdlA; Identified by similarity to SP:Q9I3S1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_4538
symbol: PFL_4538
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:G83505; match to protein family HMM PF09634.


ensembl_gene_id: PFL_4544
symbol: PFL_4544
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.


ensembl_gene_id: PFL_4547
symbol: PFL_4547
gene_biotype: protein_coding
description:
  Biotin-dependent carboxylase-like domain protein; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.


ensembl_gene_id: PFL_4549
symbol: PFL_4549
gene_biotype: protein_coding
description:
  Putative acetyl-CoA carboxylase, biotin carboxylase subunit; Identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786.


ensembl_gene_id: PFL_4550
symbol: PFL_4550
gene_biotype: protein_coding
description:
  Putative biotin-requiring enzyme; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: PFL_4561
symbol: PFL_4561
gene_biotype: protein_coding
description:
  Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_4562
symbol: PFL_4562
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04542; match to protein family HMM PF07719; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.


ensembl_gene_id: PFL_4575
symbol: kdpF
gene_biotype: protein_coding
description:
  K+-transporting ATPase, F subunit; Identified by match to protein family HMM PF09604; match to protein family HMM TIGR02115.


ensembl_gene_id: PFL_4576
symbol: PFL_4576
gene_biotype: protein_coding
description:
  Transcription activator, effector-binding domain protein; Identified by match to protein family HMM PF06445.


ensembl_gene_id: PFL_4579
symbol: gntT
gene_biotype: protein_coding
description:
  High-affinity gluconate transporter GntT; Identified by similarity to SP:P39835; match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791.


ensembl_gene_id: PFL_4581
symbol: gntR
gene_biotype: protein_coding
description:
  Transcriptional regulator GntR; Identified by similarity to SP:P46860; match to protein family HMM PF00356; match to protein family HMM PF00532.


ensembl_gene_id: PFL_4583
symbol: PFL_4583
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P34818; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_4587
symbol: PFL_4587
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.


ensembl_gene_id: PFL_4590
symbol: PFL_4590
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis transducer/sensory box protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_4605
symbol: PFL_4605
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF09537; match to protein family HMM TIGR02284.


ensembl_gene_id: PFL_4608
symbol: eda
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182.


ensembl_gene_id: PFL_4611
symbol: hexR
gene_biotype: protein_coding
description:
  Transcriptional regulator HexR; Identified by similarity to SP:P46118; match to protein family HMM PF01380; match to protein family HMM PF01418.


ensembl_gene_id: PFL_4612
symbol: PFL_4612
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01263; Belongs to the glucose-6-phosphate 1-epimerase family.


ensembl_gene_id: PFL_4613
symbol: oprB
gene_biotype: protein_coding
description:
  Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.


ensembl_gene_id: PFL_4614
symbol: PFL_4614
gene_biotype: protein_coding
description:
  Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_4615
symbol: PFL_4615
gene_biotype: protein_coding
description:
  Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: PFL_4617
symbol: PFL_4617
gene_biotype: protein_coding
description:
  Putative sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:O06875; match to protein family HMM PF01547.


ensembl_gene_id: PFL_4620
symbol: gltR
gene_biotype: protein_coding
description:
  DNA-binding response regulator GltR; Identified by similarity to GB:AAC44475.1; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_4621
symbol: glk
gene_biotype: protein_coding
description:
  Glucokinase; Identified by similarity to SP:P46880; match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.


ensembl_gene_id: PFL_4622
symbol: edd
gene_biotype: protein_coding
description:
  Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.


ensembl_gene_id: PFL_4627
symbol: phuR
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane heme receptor PhuR; Transducer Annotation based on sequence similarity to GB:AAC13289.1. See Ochsner et. al. (PMID:10658665); identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786.


ensembl_gene_id: PFL_4628
symbol: hemO
gene_biotype: protein_coding
description:
  Heme oxygenase HemO; See Kaur et. al. 2009 (PMID: 18990702) for more information; identified by similarity to GB:AAG04061.1; match to protein family HMM PF01126.


ensembl_gene_id: PFL_4632
symbol: alkA
gene_biotype: protein_coding
description:
  DNA-3-methyladenine glycosylase II; Identified by similarity to SP:P04395; match to protein family HMM PF00730; match to protein family HMM PF06029.


ensembl_gene_id: PFL_4633
symbol: arcD2
gene_biotype: protein_coding
description:
  Arginine/ornithine antiporter; Identified by similarity to SP:P18275; match to protein family HMM PF00324; match to protein family HMM TIGR00905; match to protein family HMM TIGR03810.


ensembl_gene_id: PFL_4635
symbol: arcA
gene_biotype: protein_coding
description:
  Arginine deiminase; Identified by similarity to GB:CAA04682.1; match to protein family HMM PF02274; match to protein family HMM TIGR01078.


ensembl_gene_id: PFL_4636
symbol: argF_1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.


ensembl_gene_id: PFL_4637
symbol: arcC
gene_biotype: protein_coding
description:
  Carbamate kinase; Identified by similarity to SP:P13982; match to protein family HMM PF00696; match to protein family HMM TIGR00746; Belongs to the carbamate kinase family.


ensembl_gene_id: PFL_4639
symbol: tyrR
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein TyrR; Identified by similarity to SP:P07604; match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF07728.


ensembl_gene_id: PFL_4640
symbol: gcvH_1
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: PFL_4641
symbol: gcvP_1
gene_biotype: protein_coding
description:
  Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: PFL_4642
symbol: tdcG
gene_biotype: protein_coding
description:
  L-serine ammonia-lyase TdcG; Identified by similarity to SP:P42630; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: PFL_4643
symbol: gcvT_1
gene_biotype: protein_coding
description:
  Aminomethyltransferase; Identified by match to protein family HMM PF01571; match to protein family HMM PF08669; match to protein family HMM TIGR00528.


ensembl_gene_id: PFL_4646
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily.


ensembl_gene_id: PFL_4652
symbol: PFL_4652
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase-like protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: PFL_4653
symbol: PFL_4653
gene_biotype: protein_coding
description:
  Coenzyme F420-reducing hydrogenase, beta subunit-like protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF04432.


ensembl_gene_id: PFL_4656
symbol: PFL_4656
gene_biotype: protein_coding
description:
  AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668.


ensembl_gene_id: PFL_4669
symbol: PFL_4669
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4669 family; Identified by similarity to GB:AAP84222.1; match to protein family HMM PF08900; match to protein family HMM TIGR03761.


ensembl_gene_id: PFL_4671
symbol: PFL_4671
gene_biotype: protein_coding
description:
  Putative single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.


ensembl_gene_id: PFL_4674
symbol: PFL_4674
gene_biotype: protein_coding
description:
  Helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271.


ensembl_gene_id: PFL_4675
symbol: pilL
gene_biotype: protein_coding
description:
  Putative type IV pilus biogenesis protein PilL; Identified by similarity to GB:AAP84211.1; match to protein family HMM TIGR03748.


ensembl_gene_id: PFL_4676
symbol: pilN-2
gene_biotype: protein_coding
description:
  Type IV pilus protein, PilN; Identified by similarity to GB:AAP22528.1; match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02520.


ensembl_gene_id: PFL_4680
symbol: pilS
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilS; Identified by similarity to GB:AAL05523.1; match to protein family HMM PF08805.


ensembl_gene_id: PFL_4682
symbol: pilV
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilV; Identified by similarity to GB:ABJ13849.1; match to protein family HMM PF04917.


ensembl_gene_id: PFL_4691
symbol: rulA
gene_biotype: protein_coding
description:
  Ultraviolet light resistance protein RulA; Identified by similarity to SP:P0AG13; similarity to GB:AAG39343.1; match to protein family HMM PF00717; Belongs to the peptidase S24 family.


ensembl_gene_id: PFL_4692
symbol: rulB
gene_biotype: protein_coding
description:
  Ultraviolet light resistance protein RulB; Identified by similarity to SP:P04152; similarity to GB:AAR02142.1; match to protein family HMM PF00817.


ensembl_gene_id: PFL_4693
symbol: PFL_4693
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4693 family; Identified by match to protein family HMM TIGR03759.


ensembl_gene_id: PFL_4695
symbol: PFL_4695
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4695 family; Identified by similarity to GB:AAP22559.1; match to protein family HMM TIGR03765.


ensembl_gene_id: PFL_4696
symbol: traD
gene_biotype: protein_coding
description:
  Conjugative coupling factor TraD, PFGI-1 class; Identified by match to protein family HMM TIGR03754.


ensembl_gene_id: PFL_4697
symbol: PFL_4697
gene_biotype: protein_coding
description:
  Integrating conjugative element membrane protein, PFL_4697 family; Identified by match to protein family HMM TIGR03747.


ensembl_gene_id: PFL_4700
symbol: PFL_4700
gene_biotype: protein_coding
description:
  Integrative conjugative element protein, RAQPRD family; Identified by match to protein family HMM PF09686; match to protein family HMM TIGR01690.


ensembl_gene_id: PFL_4701
symbol: PFL_4701
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4701 family; Identified by match to protein family HMM TIGR03758.


ensembl_gene_id: PFL_4702
symbol: PFL_4702
gene_biotype: protein_coding
description:
  Integrating conjugative element membrane protein, PFL_4702 family; Identified by match to protein family HMM TIGR03745.


ensembl_gene_id: PFL_4703
symbol: PFL_4703
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4703 family; Identified by match to protein family HMM TIGR03746.


ensembl_gene_id: PFL_4704
symbol: PFL_4704
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4704 family; Identified by similarity to GB:AAP22570.1; match to protein family HMM TIGR03749.


ensembl_gene_id: PFL_4705
symbol: PFL_4705
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4705 family; Identified by match to protein family HMM TIGR03752.


ensembl_gene_id: PFL_4709
symbol: PFL_4709
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4709 family; Identified by similarity to GB:AAP94688.1; match to protein family HMM PF07511; match to protein family HMM TIGR03757.


ensembl_gene_id: PFL_4710
symbol: PFL_4710
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4710 family; Identified by similarity to GB:AAP94687.1; match to protein family HMM PF07513; match to protein family HMM TIGR03756.


ensembl_gene_id: PFL_4711
symbol: PFL_4711
gene_biotype: protein_coding
description:
  Integrating conjugative element protein, PFL_4711 family; Identified by match to protein family HMM TIGR03755.


ensembl_gene_id: PFL_4713
symbol: PFL_4713
gene_biotype: protein_coding
description:
  Addiction module antidote protein, CC2985 family; Identified by match to protein family HMM PF03693; match to protein family HMM TIGR02606.


ensembl_gene_id: PFL_4717
symbol: PFL_4717
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAM38568.1; match to protein family HMM PF05974.


ensembl_gene_id: PFL_4720
symbol: PFL_4720
gene_biotype: protein_coding
description:
  Competence/damage-inducible protein CinA C-terminal domain protein; Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.


ensembl_gene_id: PFL_4722
symbol: PFL_4722
gene_biotype: protein_coding
description:
  Putative S-(hydroxymethyl)glutathione dehydrogenase; Identified by similarity to SP:P47734; match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: PFL_4726
symbol: PFL_4726
gene_biotype: protein_coding
description:
  Glutamate-cysteine ligase, type2 family protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.


ensembl_gene_id: PFL_4727
symbol: PFL_4727
gene_biotype: protein_coding
description:
  Methyltransferase, HemK family; Identified by match to protein family HMM PF01170; match to protein family HMM PF05175; Belongs to the methyltransferase superfamily.


ensembl_gene_id: PFL_4732
symbol: cyoD_1
gene_biotype: protein_coding
description:
  Cytochrome o ubiquinol oxidase, subunit IV; Identified by similarity to SP:P18403; match to protein family HMM PF03626; match to protein family HMM TIGR02847.


ensembl_gene_id: PFL_4733
symbol: cyoC_1
gene_biotype: protein_coding
description:
  Cytochrome o ubiquinol oxidase, subunit III; Identified by similarity to SP:P18402; match to protein family HMM PF00510; match to protein family HMM TIGR02842.


ensembl_gene_id: PFL_4734
symbol: cyoB_1
gene_biotype: protein_coding
description:
  Cytochrome o ubiquinol oxidase, subunit I; Identified by similarity to SP:P18401; match to protein family HMM PF00115; match to protein family HMM TIGR02843; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: PFL_4735
symbol: cyoA_1
gene_biotype: protein_coding
description:
  Cytochrome o ubiquinol oxidase, subunit II; Identified by similarity to SP:P18400; match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433.


ensembl_gene_id: PFL_4745
symbol: ybhO
gene_biotype: protein_coding
description:
  Putative cardiolipin synthetase YbhO; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: PFL_4751
symbol: traI
gene_biotype: protein_coding
description:
  Integrating conjugative element relaxase, PFGI-1 class; Identified by match to protein family HMM PF07514; match to protein family HMM PF07515; match to protein family HMM TIGR03760.


ensembl_gene_id: PFL_4754
symbol: queC1
gene_biotype: protein_coding
description:
  Protein ExsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: PFL_4755
symbol: queE
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: PFL_4756
symbol: ygbF
gene_biotype: protein_coding
description:
  Tol-Pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: PFL_4757
symbol: pal
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PFL_4758
symbol: tolB
gene_biotype: protein_coding
description:
  Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PFL_4759
symbol: tolA
gene_biotype: protein_coding
description:
  TolA protein; Identified by match to protein family HMM PF06519; match to protein family HMM TIGR01352; match to protein family HMM TIGR02794.


ensembl_gene_id: PFL_4760
symbol: tolR
gene_biotype: protein_coding
description:
  TolR protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PFL_4761
symbol: tolQ
gene_biotype: protein_coding
description:
  TolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: PFL_4762
symbol: ybgC
gene_biotype: protein_coding
description:
  Tol-Pal system-associated acyl-CoA thioesterase; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; match to protein family HMM TIGR02799.


ensembl_gene_id: PFL_4763
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: PFL_4764
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: PFL_4765
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: PFL_4766
symbol: PFL_4766
gene_biotype: protein_coding
description:
  DNA-binding regulatory protein, YebC/PmpR family; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.


ensembl_gene_id: PFL_4767
symbol: aspS
gene_biotype: protein_coding
description:
  aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: PFL_4768
symbol: PFL_4768
gene_biotype: protein_coding
description:
  Regulatory protein, FmdB family; Identified by match to protein family HMM PF09723; match to protein family HMM TIGR02605.


ensembl_gene_id: PFL_4769
symbol: PFL_4769
gene_biotype: protein_coding
description:
  DNA-binding stress protein, Dps family; Identified by match to protein family HMM PF00210; Belongs to the Dps family.


ensembl_gene_id: PFL_4773
symbol: oprD
gene_biotype: protein_coding
description:
  Outer membrane porin OprD; Identified by similarity to SP:P32722; match to protein family HMM PF03573.


ensembl_gene_id: PFL_4774
symbol: mscS
gene_biotype: protein_coding
description:
  Small-conductance mechanosensitive channel; Identified by similarity to SP:P0C0S1; match to protein family HMM PF00924.


ensembl_gene_id: PFL_4775
symbol: PFL_4775
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF04461; Belongs to the UPF0234 family.


ensembl_gene_id: PFL_4777
symbol: PFL_4777
gene_biotype: protein_coding
description:
  Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_4778
symbol: PFL_4778
gene_biotype: protein_coding
description:
  ATP:cob(I)alamin adenosyltransferase; Identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: PFL_4779
symbol: PFL_4779
gene_biotype: protein_coding
description:
  Mutator mutT protein/thiamine monophosphate synthase (TenI); Identified by match to protein family HMM PF00293; match to protein family HMM PF02581; match to protein family HMM TIGR00586.


ensembl_gene_id: PFL_4780
symbol: argJ
gene_biotype: protein_coding
description:
  Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: PFL_4781
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: PFL_4786
symbol: purU_1
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: PFL_4788
symbol: sbcB
gene_biotype: protein_coding
description:
  Identified by similarity to SP:P04995; match to protein family HMM PF00929; match to protein family HMM PF08411.


ensembl_gene_id: PFL_4797
symbol: pyk_2
gene_biotype: protein_coding
description:
  Pyruvate kinase; Identified by similarity to SP:P21599; match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.


ensembl_gene_id: PFL_4799
symbol: PFL_4799
gene_biotype: protein_coding
description:
  2Fe-2S iron-sulfur cluster binding domain/oxidoreductase, NAD- and FAD-binding domains protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.


ensembl_gene_id: PFL_4800
symbol: PFL_4800
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain membrane protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_4801
symbol: PFL_4801
gene_biotype: protein_coding
description:
  Putative fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: PFL_4802
symbol: dctB
gene_biotype: protein_coding
description:
  C4-dicarboxylate transport sensor protein DctB; Identified by similarity to SP:P13633; match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: PFL_4803
symbol: dctD
gene_biotype: protein_coding
description:
  C4-dicarboxylate transport transcriptional regulatory protein DctD; Identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954.


ensembl_gene_id: PFL_4804
symbol: kgtP
gene_biotype: protein_coding
description:
  Alpha-ketoglutarate MFS transporter KgtP; Identified by similarity to SP:P0AEX3; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883.


ensembl_gene_id: PFL_4811
symbol: gbsA
gene_biotype: protein_coding
description:
  Betaine-aldehyde dehydrogenase; Identified by similarity to SP:P71016; match to protein family HMM PF00171.


ensembl_gene_id: PFL_4812
symbol: PFL_4812
gene_biotype: protein_coding
description:
  Putative thiamine pyrophosphate enzyme; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.


ensembl_gene_id: PFL_4814
symbol: PFL_4814
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01370.


ensembl_gene_id: PFL_4818
symbol: PFL_4818
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by similarity to GB:CAB64665.1; match to protein family HMM PF00165.


ensembl_gene_id: PFL_4822
symbol: PFL_4822
gene_biotype: protein_coding
description:
  3-beta hydroxysteroid dehydrogenase/isomerase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993.


ensembl_gene_id: PFL_4823
symbol: iciA
gene_biotype: protein_coding
description:
  Chromosome initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_4825
symbol: argO
gene_biotype: protein_coding
description:
  Arginine exporter protein ArgO; Identified by similarity to SP:P11667; match to protein family HMM PF01810.


ensembl_gene_id: PFL_4826
symbol: sodB
gene_biotype: protein_coding
description:
  Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: PFL_4827
symbol: PFL_4827
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain/cyclic diguanylate phosphodiesterase (EAL) domain lipoprotein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_4828
symbol: icmP
gene_biotype: protein_coding
description:
  Insulin-cleaving metalloproteinase outer membrane protein; Identified by similarity to GB:AAG07758.1; match to protein family HMM PF09375.


ensembl_gene_id: PFL_4835
symbol: colS
gene_biotype: protein_coding
description:
  Sensor histidine kinase ColS; Identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_4836
symbol: colR
gene_biotype: protein_coding
description:
  DNA-binding response regulator ColR; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_4838
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: PFL_4839
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: PFL_4841
symbol: PFL_4841
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.


ensembl_gene_id: PFL_4843
symbol: PFL_4843
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: PFL_4844
symbol: metG
gene_biotype: protein_coding
description:
  methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: PFL_4846
symbol: rnfB
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: PFL_4847
symbol: rnfD
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, D subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.


ensembl_gene_id: PFL_4848
symbol: rnfG
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, G subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.


ensembl_gene_id: PFL_4850
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: PFL_4853
symbol: argG
gene_biotype: protein_coding
description:
  Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: PFL_4855
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.


ensembl_gene_id: PFL_4856
symbol: rnt
gene_biotype: protein_coding
description:
  Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.


ensembl_gene_id: PFL_4858
symbol: PFL_4858
gene_biotype: protein_coding
description:
  Putative bacterioferritin-associated ferredoxin; Identified by similarity to SP:P0AE56; match to protein family HMM PF04324.


ensembl_gene_id: PFL_4859
symbol: bfr_1
gene_biotype: protein_coding
description:
  Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: PFL_4860
symbol: grxD
gene_biotype: protein_coding
description:
  Monothiol glutaredoxin, Grx4 family; Identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: PFL_4861
symbol: PFL_4861
gene_biotype: protein_coding
description:
  Molybdopterin oxidoreductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568.


ensembl_gene_id: PFL_4864
symbol: PFL_4864
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_4866
symbol: ybaK
gene_biotype: protein_coding
description:
  Cys-tRNA[Pro] and Cys-tRNA[Cys] deacylase YbaK; Identified by similarity to SP:P0AAR3; match to protein family HMM PF04073; match to protein family HMM TIGR00011; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: PFL_4867
symbol: glpF
gene_biotype: protein_coding
description:
  Glycerol uptake facilitator protein GlpF; Identified by similarity to SP:P0AER0; match to protein family HMM PF00230; match to protein family HMM TIGR00861; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: PFL_4868
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: PFL_4869
symbol: glpR
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate regulon repressor; Identified by similarity to SP:P09392; match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279.


ensembl_gene_id: PFL_4870
symbol: glpD
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; Identified by similarity to SP:P13035; match to protein family HMM PF01266; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: PFL_4871
symbol: gltI
gene_biotype: protein_coding
description:
  Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein GltI; Identified by similarity to SP:P37902; match to protein family HMM PF00497.


ensembl_gene_id: PFL_4872
symbol: gltJ
gene_biotype: protein_coding
description:
  Glutamate/aspartate ABC transporter, permease protein GltJ; Identified by similarity to SP:P0AER3; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_4873
symbol: gltK
gene_biotype: protein_coding
description:
  Glutamate/aspartate ABC transporter, permease protein GltK; Identified by similarity to SP:P0AER5; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: PFL_4874
symbol: gltL
gene_biotype: protein_coding
description:
  Glutamate/aspartate ABC transporter, ATP-binding protein GltL; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005.


ensembl_gene_id: PFL_4880
symbol: PFL_4880
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane.


ensembl_gene_id: PFL_4890
symbol: metR
gene_biotype: protein_coding
description:
  Transcriptional regulator MetR; Identified by similarity to SP:P0A9F9; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_4891
symbol: PFL_4891
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family; Identified by similarity to GB:AAK38651.1; match to protein family HMM PF00583.


ensembl_gene_id: PFL_4895
symbol: PFL_4895
gene_biotype: protein_coding
description:
  Response regulator/HD domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966.


ensembl_gene_id: PFL_4896
symbol: rpmE_1
gene_biotype: protein_coding
description:
  Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.


ensembl_gene_id: PFL_4897
symbol: puuP
gene_biotype: protein_coding
description:
  Putrescine:hydrogen symporter PuuP; Identified by similarity to SP:P76037; match to protein family HMM PF00324.


ensembl_gene_id: PFL_4900
symbol: PFL_4900
gene_biotype: protein_coding
description:
  Glutamate synthase domain protein; Identified by similarity to GB:ABA76296.1; match to protein family HMM PF01645; Belongs to the glutamate synthase family.


ensembl_gene_id: PFL_4903
symbol: PFL_4903
gene_biotype: protein_coding
description:
  Putative hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561.


ensembl_gene_id: PFL_4906
symbol: PFL_4906
gene_biotype: protein_coding
description:
  Proline-specific permease, ProY family; Identified by similarity to SP:P37460; match to protein family HMM PF00324.


ensembl_gene_id: PFL_4916
symbol: gcd
gene_biotype: protein_coding
description:
  Quinoprotein glucose dehydrogenase; Identified by similarity to SP:P05465; match to protein family HMM PF01011; match to protein family HMM TIGR03074.


ensembl_gene_id: PFL_4922
symbol: PFL_4922
gene_biotype: protein_coding
description:
  Putative diguanylate cyclase; Identified by similarity to GB:AAP85527.1; match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_4924
symbol: PFL_4924
gene_biotype: protein_coding
description:
  Chagasin family peptidase inhibitor I42; Identified by similarity to SP:Q966X9; match to protein family HMM PF09394.


ensembl_gene_id: PFL_4926
symbol: cmoA
gene_biotype: protein_coding
description:
  tRNA (cmo5U34)-methyltransferase CmoA; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).


ensembl_gene_id: PFL_4927
symbol: cmoB
gene_biotype: protein_coding
description:
  tRNA (mo5U34)-methyltransferase CmoB; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.


ensembl_gene_id: PFL_4928
symbol: tadA
gene_biotype: protein_coding
description:
  tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: PFL_4929
symbol: cumA
gene_biotype: protein_coding
description:
  Multicopper oxidase, CumA; Identified by similarity to GB:ABY96941.1; match to protein family HMM PF07731; match to protein family HMM PF07732.


ensembl_gene_id: PFL_4931
symbol: ptsP
gene_biotype: protein_coding
description:
  Phosphotransferase system, glucose-specific EI/HPr/EIIA component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417.


ensembl_gene_id: PFL_4933
symbol: treC
gene_biotype: protein_coding
description:
  Alpha,alpha-phosphotrehalase; Identified by similarity to SP:P39795; match to protein family HMM PF00128; match to protein family HMM TIGR02403.


ensembl_gene_id: PFL_4934
symbol: treP
gene_biotype: protein_coding
description:
  PTS system trehalose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992.


ensembl_gene_id: PFL_4935
symbol: treR
gene_biotype: protein_coding
description:
  Trehalose operon repressor; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404.


ensembl_gene_id: PFL_4940
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: PFL_4944
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: PFL_4946
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: PFL_4950
symbol: engA
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: PFL_4951
symbol: yfgL
gene_biotype: protein_coding
description:
  Outer membrane assembly lipoprotein YfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: PFL_4953
symbol: hisS
gene_biotype: protein_coding
description:
  histidine--tRNA ligase; Identified by similarity to SP:P04804; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.


ensembl_gene_id: PFL_4954
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: PFL_4956
symbol: pilF
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis/stability protein PilF; Identified by similarity to GB:AAG07192.1; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM TIGR02521.


ensembl_gene_id: PFL_4957
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: PFL_4958
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: PFL_4959
symbol: iscX
gene_biotype: protein_coding
description:
  FeS assembly protein IscX; Identified by match to protein family HMM PF04384; match to protein family HMM TIGR03412.


ensembl_gene_id: PFL_4960
symbol: fdx
gene_biotype: protein_coding
description:
  Ferredoxin, 2Fe-2S type, ISC system; Identified by similarity to SP:P0A9R4; match to protein family HMM PF00111; match to protein family HMM TIGR02007.


ensembl_gene_id: PFL_4961
symbol: hscA
gene_biotype: protein_coding
description:
  Fe-S protein assembly chaperone HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.


ensembl_gene_id: PFL_4962
symbol: hscB
gene_biotype: protein_coding
description:
  Fe-S protein assembly co-chaperone HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family.


ensembl_gene_id: PFL_4963
symbol: iscA
gene_biotype: protein_coding
description:
  Iron-sulfur cluster assembly protein IscA; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system; Belongs to the HesB/IscA family.


ensembl_gene_id: PFL_4964
symbol: iscU
gene_biotype: protein_coding
description:
  FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.


ensembl_gene_id: PFL_4965
symbol: iscS
gene_biotype: protein_coding
description:
  Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.


ensembl_gene_id: PFL_4966
symbol: iscR
gene_biotype: protein_coding
description:
  Iron-sulfur cluster assembly transcription factor IscR; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins.


ensembl_gene_id: PFL_4967
symbol: cysE
gene_biotype: protein_coding
description:
  Serine O-acetyltransferase; Identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172.


ensembl_gene_id: PFL_4968
symbol: trmJ
gene_biotype: protein_coding
description:
  tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: PFL_4969
symbol: suhB
gene_biotype: protein_coding
description:
  Inositol-1-monophosphatase; Identified by similarity to SP:P22783; match to protein family HMM PF00459; Belongs to the inositol monophosphatase superfamily.


ensembl_gene_id: PFL_4971
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: PFL_4972
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: PFL_4973
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: PFL_4974
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]


ensembl_gene_id: PFL_4975
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: PFL_4986
symbol: ppk2
gene_biotype: protein_coding
description:
  Polyphosphate kinase 2; Identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976; match to protein family HMM TIGR03707.


ensembl_gene_id: PFL_4988
symbol: ectB
gene_biotype: protein_coding
description:
  Diaminobutyrate--2-oxoglutarate transaminase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PFL_4989
symbol: PFL_4989
gene_biotype: protein_coding
description:
  Lysine N6-hydroxylase/L-ornithine N5-oxygenase family protein; Identified by similarity to SP:Q51548.


ensembl_gene_id: PFL_4990
symbol: PFL_4990
gene_biotype: protein_coding
description:
  Putative glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.


ensembl_gene_id: PFL_4997
symbol: PFL_4997
gene_biotype: protein_coding
description:
  DNA-binding response regulator, OmpR family; Identified by similarity to SP:P0AA16; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_5005
symbol: PFL_5005
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family/rhodanese-like domain protein; Identified by match to protein family HMM PF00581; match to protein family HMM PF01022.


ensembl_gene_id: PFL_5008
symbol: yohD
gene_biotype: protein_coding
description:
  Inner membrane protein YohD; Identified by similarity to SP:P33366; match to protein family HMM PF09335.


ensembl_gene_id: PFL_5009
symbol: PFL_5009
gene_biotype: protein_coding
description:
  Putative 4-aminobutyrate transaminase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PFL_5018
symbol: PFL_5018
gene_biotype: protein_coding
description:
  Putative thiamin pyrophosphate binding protein; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.


ensembl_gene_id: PFL_5024
symbol: PFL_5024
gene_biotype: protein_coding
description:
  Putative arginine/pyruvate transaminase; Identified by similarity to GB:AAG08361.1; match to protein family HMM PF00155; match to protein family HMM PF01053; match to protein family HMM PF01212.


ensembl_gene_id: PFL_5026
symbol: PFL_5026
gene_biotype: protein_coding
description:
  Cobalamin synthesis protein/P47K family protein; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.


ensembl_gene_id: PFL_5028
symbol: glyA_1
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Identified by similarity to SP:P00477; match to protein family HMM PF00464.


ensembl_gene_id: PFL_5030
symbol: PFL_5030
gene_biotype: protein_coding
description:
  Putative membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: PFL_5031
symbol: queC
gene_biotype: protein_coding
description:
  Queuosine biosynthesis protein QueC; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: PFL_5038
symbol: dsbB_1
gene_biotype: protein_coding
description:
  Disulfide bond formation protein B; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.


ensembl_gene_id: PFL_5040
symbol: hmp
gene_biotype: protein_coding
description:
  Flavohemoprotein; Identified by similarity to SP:P24232; match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family.


ensembl_gene_id: PFL_5041
symbol: PFL_5041
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:P37013; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728.


ensembl_gene_id: PFL_5045
symbol: PFL_5045
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAO54842.1; match to protein family HMM PF03692.


ensembl_gene_id: PFL_5046
symbol: PFL_5046
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis protein; Identified by similarity to GB:AAG04950.1; match to protein family HMM PF00015.


ensembl_gene_id: PFL_5048
symbol: PFL_5048
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P76397; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_5050
symbol: PFL_5050
gene_biotype: protein_coding
description:
  DNA-binding heavy metal response regulator; Identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387.


ensembl_gene_id: PFL_5055
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: PFL_5056
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: PFL_5057
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: PFL_5058
symbol: ftsQ
gene_biotype: protein_coding
description:
  Putative cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.


ensembl_gene_id: PFL_5059
symbol: ddlB
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase B; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: PFL_5061
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: PFL_5062
symbol: ftsW
gene_biotype: protein_coding
description:
  Cell division protein FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.


ensembl_gene_id: PFL_5063
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: PFL_5064
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: PFL_5065
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: PFL_5066
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: PFL_5067
symbol: ftsI
gene_biotype: protein_coding
description:
  Peptidoglycan synthetase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.


ensembl_gene_id: PFL_5068
symbol: ftsL
gene_biotype: protein_coding
description:
  Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: PFL_5069
symbol: mraW
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: PFL_5070
symbol: mraZ
gene_biotype: protein_coding
description:
  MraZ protein; Identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242; Belongs to the MraZ family.


ensembl_gene_id: PFL_5071
symbol: yraL
gene_biotype: protein_coding
description:
  S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: PFL_5073
symbol: PFL_5073
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; Belongs to the UPF0102 family.


ensembl_gene_id: PFL_5074
symbol: gmhA
gene_biotype: protein_coding
description:
  Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.


ensembl_gene_id: PFL_5075
symbol: PFL_5075
gene_biotype: protein_coding
description:
  Putative phospholipid-binding domain lipoprotein; Identified by match to protein family HMM PF04972.


ensembl_gene_id: PFL_5079
symbol: petB
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: PFL_5080
symbol: petA
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: PFL_5081
symbol: rpsI
gene_biotype: protein_coding
description:
  Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: PFL_5082
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: PFL_5083
symbol: tas
gene_biotype: protein_coding
description:
  Putative oxidoreductase, starvation associated protein Tas; Identified by similarity to SP:P0A9T4; match to protein family HMM PF00248.


ensembl_gene_id: PFL_5087
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PFL_5092
symbol: rfaH
gene_biotype: protein_coding
description:
  Transcriptional activator RfaH; Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components. Belongs to the RfaH family.


ensembl_gene_id: PFL_5093
symbol: PFL_5093
gene_biotype: protein_coding
description:
  CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase; Identified by similarity to SP:P37911; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.


ensembl_gene_id: PFL_5094
symbol: rfbF
gene_biotype: protein_coding
description:
  Glucose-1-phosphate cytidylyltransferase; Identified by similarity to PIR:JE0088; match to protein family HMM PF00483; match to protein family HMM TIGR02623.


ensembl_gene_id: PFL_5095
symbol: rfbG
gene_biotype: protein_coding
description:
  CDP-glucose-4,6-dehydratase; Identified by similarity to SP:P26397; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622.


ensembl_gene_id: PFL_5096
symbol: PFL_5096
gene_biotype: protein_coding
description:
  Lipopolysaccharide biosynthesis protein RfbH; Identified by similarity to SP:P26398; match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: PFL_5097
symbol: ilvB
gene_biotype: protein_coding
description:
  Acetolactate synthase II, large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.


ensembl_gene_id: PFL_5100
symbol: PFL_5100
gene_biotype: protein_coding
description:
  Putative O antigen biosynthesis abequosyltransferase rfbV; Identified by similarity to SP:P26401; match to protein family HMM PF00535.


ensembl_gene_id: PFL_5105
symbol: PFL_5105
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: PFL_5106
symbol: wbjB
gene_biotype: protein_coding
description:
  Trifunctional UDP-D-GlcNAc 4,6-dehydratase/5-epimerase/3-epimerase WbjB; See Kneidinger et. al. 2003 (PMID: 12464616) for more information; identified by similarity to GB:AAD45265.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08485.


ensembl_gene_id: PFL_5107
symbol: wbjD
gene_biotype: protein_coding
description:
  UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase WbjD; See Kneidinger et. al. 2003 (PMID: 12464616) for more information; identified by similarity to GB:AAD45267.1; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: PFL_5108
symbol: ogt
gene_biotype: protein_coding
description:
  methylated-DNA--[protein]-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: PFL_5111
symbol: PFL_5111
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_5114
symbol: PFL_5114
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721.


ensembl_gene_id: PFL_5117
symbol: alkK
gene_biotype: protein_coding
description:
  Putative medium-chain-fatty-acid--CoA ligase; Identified by similarity to SP:Q00594; match to protein family HMM PF00501.


ensembl_gene_id: PFL_5121
symbol: hprA
gene_biotype: protein_coding
description:
  Glycerate dehydrogenase; Identified by similarity to SP:Q59516; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: PFL_5122
symbol: rsmC
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase C; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family.


ensembl_gene_id: PFL_5139
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: PFL_5140
symbol: pyrP
gene_biotype: protein_coding
description:
  Uracil permease; Identified by similarity to SP:P41006; match to protein family HMM PF00860; match to protein family HMM TIGR00801.


ensembl_gene_id: PFL_5141
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: PFL_5142
symbol: PFL_5142
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF08338; match to protein family HMM TIGR01777.


ensembl_gene_id: PFL_5143
symbol: PFL_5143
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P)+. May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers; Belongs to the bacterial renalase family.


ensembl_gene_id: PFL_5144
symbol: PFL_5144
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF09493; match to protein family HMM TIGR02450.


ensembl_gene_id: PFL_5145
symbol: PFL_5145
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF04463; match to protein family HMM PF08349.


ensembl_gene_id: PFL_5147
symbol: phrB
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.


ensembl_gene_id: PFL_5150
symbol: PFL_5150
gene_biotype: protein_coding
description:
  Monoamine oxidase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.


ensembl_gene_id: PFL_5152
symbol: PFL_5152
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_5154
symbol: PFL_5154
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:CAG20701.1; match to protein family HMM PF03692.


ensembl_gene_id: PFL_5155
symbol: PFL_5155
gene_biotype: protein_coding
description:
  Lipid A 3-O-deacylase, PagL; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.


ensembl_gene_id: PFL_5157
symbol: PFL_5157
gene_biotype: protein_coding
description:
  ThiF/MoeB domain protein; Identified by similarity to SP:P12282; similarity to SP:P30138; match to protein family HMM PF00899; match to protein family HMM PF05237.


ensembl_gene_id: PFL_5158
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: PFL_5159
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: PFL_5160
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: PFL_5162
symbol: lolB
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.


ensembl_gene_id: PFL_5163
symbol: ispE
gene_biotype: protein_coding
description:
  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: PFL_5165
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: PFL_5166
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: PFL_5167
symbol: pth
gene_biotype: protein_coding
description:
  aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: PFL_5168
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: PFL_5169
symbol: PFL_5169
gene_biotype: protein_coding
description:
  Receptor; identified by similarity to SP:Q05098; match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: PFL_5170
symbol: pobA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate 3-monooxygenase; Identified by similarity to SP:P20586; match to protein family HMM PF01494; match to protein family HMM TIGR02360.


ensembl_gene_id: PFL_5171
symbol: pobR
gene_biotype: protein_coding
description:
  Transcriptional regulator PobR; Identified by similarity to GB:CAB64665.1; match to protein family HMM PF00165; match to protein family HMM PF02311.


ensembl_gene_id: PFL_5172
symbol: fsr
gene_biotype: protein_coding
description:
  Fosmidomycin resistance protein; Identified by similarity to SP:P52067; match to protein family HMM PF07690.


ensembl_gene_id: PFL_5174
symbol: potA
gene_biotype: protein_coding
description:
  Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.


ensembl_gene_id: PFL_5177
symbol: PFL_5177
gene_biotype: protein_coding
description:
  Polyamine ABC transporter, periplasmic polyamine-binding protein; Identified by match to protein family HMM PF01547.


ensembl_gene_id: PFL_5189
symbol: PFL_5189
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376; match to protein family HMM PF06445.


ensembl_gene_id: PFL_5190
symbol: PFL_5190
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:A83462; match to protein family HMM PF02578.


ensembl_gene_id: PFL_5194
symbol: ddlA
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: PFL_5196
symbol: PFL_5196
gene_biotype: protein_coding
description:
  Translocator protein, LysE family; Identified by similarity to SP:P0AG38; match to protein family HMM PF01810.


ensembl_gene_id: PFL_5199
symbol: bphO
gene_biotype: protein_coding
description:
  Heme oxygenase BphO; Identified by similarity to GB:AAM77559.1; match to protein family HMM PF01126.


ensembl_gene_id: PFL_5200
symbol: bphP
gene_biotype: protein_coding
description:
  Bacteriophytochrome histidine kinase; Identified by similarity to GB:AAM00282.1; match to protein family HMM PF00360; match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF08446.


ensembl_gene_id: PFL_5205
symbol: PFL_5205
gene_biotype: protein_coding
description:
  YbaK/prolyl-tRNA synthetase-associated domain protein; Identified by similarity to SP:P64483; match to protein family HMM PF04073.


ensembl_gene_id: PFL_5218
symbol: czcA
gene_biotype: protein_coding
description:
  Cobalt/zinc/cadmium resistance protein CzcA; Identified by similarity to SP:P13511; match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: PFL_5219
symbol: czcB
gene_biotype: protein_coding
description:
  Cobalt/zinc/cadmium resistance protein CzcB; Identified by similarity to SP:P13510; match to protein family HMM PF00529; match to protein family HMM TIGR01730; contains internal deletion; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: PFL_5220
symbol: czcC
gene_biotype: protein_coding
description:
  Cobalt/zinc/cadmium resistance protein CzcC; Identified by similarity to SP:P13509; match to protein family HMM PF02321.


ensembl_gene_id: PFL_5221
symbol: czcR
gene_biotype: protein_coding
description:
  Putative DNA-binding heavy metal response regulator; Identified by similarity to SP:O31395; similarity to GB:CAB56468.1; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387.


ensembl_gene_id: PFL_5222
symbol: czcD
gene_biotype: protein_coding
description:
  Cobalt/zinc/cadmium resistance protein CzcD; Identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297.


ensembl_gene_id: PFL_5223
symbol: PFL_5223
gene_biotype: protein_coding
description:
  Transporter, gluconate:H+ symporter family; Identified by similarity to SP:Q9ZIJ1; match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791.


ensembl_gene_id: PFL_5227
symbol: panB_1
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: PFL_5230
symbol: PFL_5230
gene_biotype: protein_coding
description:
  Putative short-chain fatty acid transporter; Identified by similarity to SP:P76460; match to protein family HMM PF02667.


ensembl_gene_id: PFL_5231
symbol: acpA
gene_biotype: protein_coding
description:
  Acid phosphatase AcpA; Identified by similarity to GB:AAF77194.1; match to protein family HMM PF04185; match to protein family HMM TIGR01409; match to protein family HMM TIGR03397.


ensembl_gene_id: PFL_5232
symbol: hscC
gene_biotype: protein_coding
description:
  Chaperone protein HscC; Identified by similarity to SP:P77319; match to protein family HMM PF00012; Belongs to the heat shock protein 70 family.


ensembl_gene_id: PFL_5237
symbol: rimI
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.


ensembl_gene_id: PFL_5250
symbol: yedZ
gene_biotype: protein_coding
description:
  Membrane protein YedZ; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using th [...]


ensembl_gene_id: PFL_5251
symbol: yedY
gene_biotype: protein_coding
description:
  Periplasmic reductase, molybdopterin binding protein YedY; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, b [...]


ensembl_gene_id: PFL_5252
symbol: pssA_1
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--serine O-phosphatidyltransferase; Identified by similarity to SP:Q48269; match to protein family HMM PF01066; match to protein family HMM TIGR00473; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: PFL_5253
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: PFL_5254
symbol: ilvN
gene_biotype: protein_coding
description:
  Acetolactate synthase, small subunit; Identified by similarity to SP:P00894; match to protein family HMM PF01842; match to protein family HMM TIGR00119.


ensembl_gene_id: PFL_5255
symbol: ilvB-2
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; Identified by similarity to SP:P00893; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.


ensembl_gene_id: PFL_5258
symbol: mrcB
gene_biotype: protein_coding
description:
  Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).


ensembl_gene_id: PFL_5263
symbol: phuW
gene_biotype: protein_coding
description:
  Putative lipoprotein PhuW; Identified by similarity to GB:AAC13284.1; match to protein family HMM PF04187.


ensembl_gene_id: PFL_5264
symbol: phuV
gene_biotype: protein_coding
description:
  Hemin ABC transporter, ATP-binding protein PhuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PFL_5265
symbol: phuU
gene_biotype: protein_coding
description:
  Hemin ABC transporter, permease protein PhuU; See PMID: 10658665 for more information; identified by similarity to GB:AAC13286.1; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: PFL_5266
symbol: phuT
gene_biotype: protein_coding
description:
  Hemin ABC transporter, periplasmic hemin-binding protein PhuT; See PMID: 10658665 for more information; identified by similarity to GB:AAC13287.1; match to protein family HMM PF01497.


ensembl_gene_id: PFL_5268
symbol: sfsA
gene_biotype: protein_coding
description:
  Sugar fermentation stimulation protein; Identified by similarity to SP:P18273; match to protein family HMM PF03749; match to protein family HMM TIGR00230; Belongs to the SfsA family.


ensembl_gene_id: PFL_5269
symbol: PFL_5269
gene_biotype: protein_coding
description:
  Aminotransferase, class I/II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01212.


ensembl_gene_id: PFL_5270
symbol: dksA
gene_biotype: protein_coding
description:
  RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.


ensembl_gene_id: PFL_5271
symbol: gluQ
gene_biotype: protein_coding
description:
  glutamyl-Q tRNA(Asp) synthetase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.


ensembl_gene_id: PFL_5273
symbol: cbrA
gene_biotype: protein_coding
description:
  Two-component sensor histidine kinase CbrA; Identified by similarity to GB:BAB20866.1; match to protein family HMM PF00474; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_5274
symbol: cbrB
gene_biotype: protein_coding
description:
  Two-component response regulator CbrB; Identified by similarity to GB:BAB20867.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728.


ensembl_gene_id: PFL_5275
symbol: pcnB
gene_biotype: protein_coding
description:
  poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: PFL_5276
symbol: folK_1
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498.


ensembl_gene_id: PFL_5278
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: PFL_5287
symbol: pilA
gene_biotype: protein_coding
description:
  Type IV pilus protein PilA; Identified by similarity to SP:P04739; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532; Belongs to the N-Me-Phe pilin family.


ensembl_gene_id: PFL_5288
symbol: pilC
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilC; Identified by similarity to GB:AAA25733.1; match to protein family HMM PF00482.


ensembl_gene_id: PFL_5289
symbol: pilD
gene_biotype: protein_coding
description:
  Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.


ensembl_gene_id: PFL_5290
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: PFL_5291
symbol: yacG
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.


ensembl_gene_id: PFL_5296
symbol: ndh
gene_biotype: protein_coding
description:
  NADH dehydrogenase; Identified by similarity to SP:P00393; match to protein family HMM PF00070; match to protein family HMM PF07992.


ensembl_gene_id: PFL_5297
symbol: pip-2
gene_biotype: protein_coding
description:
  Putative proline imino peptidase; See Subramoni et al 2011 (PMID: 21531826) for more information; identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250.


ensembl_gene_id: PFL_5298
symbol: psoR
gene_biotype: protein_coding
description:
  LuxR family transcriptional regulatory protein PsoR; See Subramoni et al 2011 (PMID: 21531826) for more information; identified by match to protein family HMM PF00196; match to protein family HMM PF03472.


ensembl_gene_id: PFL_5299
symbol: pepQ
gene_biotype: protein_coding
description:
  Creatinase PepQ; See Subramoni et al 2011 (PMID: 21531826) for more information; identified by similarity to SP:P38488; match to protein family HMM PF00557; match to protein family HMM PF01321.


ensembl_gene_id: PFL_5304
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PFL_5305
symbol: PFL_5305
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: PFL_5306
symbol: rluD
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: PFL_5307
symbol: bamD
gene_biotype: protein_coding
description:
  Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: PFL_5309
symbol: pilR
gene_biotype: protein_coding
description:
  Putative sigma-54 dependent DNA-binding response regulator PilR; Identified by similarity to SP:Q00934; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954.


ensembl_gene_id: PFL_5310
symbol: thiO
gene_biotype: protein_coding
description:
  Glycine oxidase ThiO; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352.


ensembl_gene_id: PFL_5311
symbol: PFL_5311
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein; Identified by similarity to GB:AAA93504.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.


ensembl_gene_id: PFL_5315
symbol: pilV-2
gene_biotype: protein_coding
description:
  Type IV pilus modification protein PilV; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.


ensembl_gene_id: PFL_5316
symbol: PFL_5316
gene_biotype: protein_coding
description:
  Putative pilin; Identified by similarity to GB:AAP81272.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.


ensembl_gene_id: PFL_5318
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: PFL_5319
symbol: fkpB
gene_biotype: protein_coding
description:
  FKBP-type peptidyl-prolyl cis-trans isomerase FkpB; Identified by similarity to SP:P0AEM0; match to protein family HMM PF00254.


ensembl_gene_id: PFL_5320
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: PFL_5321
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: PFL_5322
symbol: ribF
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.


ensembl_gene_id: PFL_5323
symbol: mviN
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: PFL_5326
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: PFL_5327
symbol: cgtA
gene_biotype: protein_coding
description:
  Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: PFL_5328
symbol: rpmA
gene_biotype: protein_coding
description:
  Ribosomal protein L27; Identified by similarity to SP:P02427; match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: PFL_5329
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: PFL_5330
symbol: PFL_5330
gene_biotype: protein_coding
description:
  Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: PFL_5331
symbol: phnA
gene_biotype: protein_coding
description:
  Putative alkylphosphonate utilization operon protein PhnA; Identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686.


ensembl_gene_id: PFL_5333
symbol: fklB
gene_biotype: protein_coding
description:
  FKBP-type peptidyl-prolyl cis-trans isomerase FklB; Identified by similarity to SP:P0A9L3; match to protein family HMM PF00254; match to protein family HMM PF01346.


ensembl_gene_id: PFL_5335
symbol: PFL_5335
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645.


ensembl_gene_id: PFL_5343
symbol: gdhA
gene_biotype: protein_coding
description:
  NADP-specific glutamate dehydrogenase; Identified by similarity to SP:P00370; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: PFL_5344
symbol: PFL_5344
gene_biotype: protein_coding
description:
  ATP-binding cassette protein, ChvD family; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03719.


ensembl_gene_id: PFL_5345
symbol: morA
gene_biotype: protein_coding
description:
  Developmental regulator MorA; Identified by similarity to GB:AAP85527.1; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_5346
symbol: glyA_2
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: PFL_5350
symbol: yjiA
gene_biotype: protein_coding
description:
  GTP-binding protein, YjiA family; Identified by similarity to SP:P24203; match to protein family HMM PF02492; match to protein family HMM PF07683.


ensembl_gene_id: PFL_5352
symbol: cstA
gene_biotype: protein_coding
description:
  Carbon starvation protein CstA; Identified by similarity to SP:P15078; match to protein family HMM PF02554.


ensembl_gene_id: PFL_5354
symbol: PFL_5354
gene_biotype: protein_coding
description:
  Type IV pilus assembly protein, PilZ family; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.


ensembl_gene_id: PFL_5356
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: PFL_5358
symbol: katB
gene_biotype: protein_coding
description:
  Catalase KatB; Identified by similarity to SP:Q59635; match to protein family HMM PF00199; Belongs to the catalase family.


ensembl_gene_id: PFL_5359
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: PFL_5360
symbol: fpr_2
gene_biotype: protein_coding
description:
  ferredoxin--NADP(+) reductase; Identified by similarity to SP:P28861; match to protein family HMM PF00175; match to protein family HMM PF00970.


ensembl_gene_id: PFL_5361
symbol: rlmG
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase G; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.


ensembl_gene_id: PFL_5366
symbol: PFL_5366
gene_biotype: protein_coding
description:
  Transporter, major facilitator family; Identified by match to protein family HMM PF05977; match to protein family HMM PF07690.


ensembl_gene_id: PFL_5372
symbol: PFL_5372
gene_biotype: protein_coding
description:
  Purine transporter, AzgA family protein; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916.


ensembl_gene_id: PFL_5373
symbol: trmA
gene_biotype: protein_coding
description:
  tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA).


ensembl_gene_id: PFL_5374
symbol: hasF
gene_biotype: protein_coding
description:
  Type 1 secretion system outer membrane protein HasF; Identified by similarity to GB:BAA88494.1; match to protein family HMM PF02321; match to protein family HMM TIGR01844.


ensembl_gene_id: PFL_5375
symbol: hasE
gene_biotype: protein_coding
description:
  Type 1 secretion system membrane fusion protein HasE; Identified by similarity to GB:BAA88493.1; match to protein family HMM PF00529; match to protein family HMM TIGR01843.


ensembl_gene_id: PFL_5376
symbol: hasD
gene_biotype: protein_coding
description:
  Type 1 secretion system ATPase HasD; Identified by similarity to GB:BAA88492.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842.


ensembl_gene_id: PFL_5378
symbol: hasR
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane heme receptor HasR; Transducer; identified by similarity to GB:AAD31013.1; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786.


ensembl_gene_id: PFL_5379
symbol: hasS
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein HasS; See Wandersman C, Delepelaire P. 2004 (PMID: 15487950) for a review article comparing S. marcescens has operon to that of the pseudomonads; identified by similarity to SP:P23485; similarity to PIR:S46356; similarity to GB:CAE46935.1; match to protein family HMM PF04773.


ensembl_gene_id: PFL_5380
symbol: hasI
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor, ECF subfamily, HasI; See Wandersman C, Delepelaire P. 2004 (PMID: 15487950) for a review article comparing S. marcescens has operon to that of the pseudomonads; identified by similarity to GB:CAE46934.1; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: PFL_5382
symbol: aroE-2
gene_biotype: protein_coding
description:
  Quinate/shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: PFL_5384
symbol: PFL_5384
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; Identified by similarity to GB:ABC42333.1; match to protein family HMM PF00440.


ensembl_gene_id: PFL_5385
symbol: PFL_5385
gene_biotype: protein_coding
description:
  Putative 4-hydroxyphenylpyruvate dioxygenase; Identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM PF01261.


ensembl_gene_id: PFL_5393
symbol: PFL_5393
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; Identified by similarity to SP:P16528; match to protein family HMM PF01614; match to protein family HMM PF09339.


ensembl_gene_id: PFL_5395
symbol: pcaG_2
gene_biotype: protein_coding
description:
  Protocatechuate 3,4-dioxygenase, alpha subunit; Identified by similarity to SP:P00436; match to protein family HMM PF00775; match to protein family HMM TIGR02423.


ensembl_gene_id: PFL_5396
symbol: pcaH_2
gene_biotype: protein_coding
description:
  Protocatechuate 3,4-dioxygenase, beta subunit; Identified by similarity to SP:P00437; match to protein family HMM PF00775; match to protein family HMM TIGR02422.


ensembl_gene_id: PFL_5397
symbol: pcaQ
gene_biotype: protein_coding
description:
  Pca operon transcription factor PcaQ; Identified by similarity to SP:P52668; match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_5400
symbol: PFL_5400
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IA, variant 1 and 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.


ensembl_gene_id: PFL_5401
symbol: tesB
gene_biotype: protein_coding
description:
  acyl-CoA thioesterase II; Identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189.


ensembl_gene_id: PFL_5405
symbol: galE
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Identified by similarity to SP:Q59678; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: PFL_5407
symbol: rhlE_1
gene_biotype: protein_coding
description:
  Putative ATP-dependent RNA helicase; Identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family.


ensembl_gene_id: PFL_5417
symbol: hrpB
gene_biotype: protein_coding
description:
  ATP-dependent helicase HrpB; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF08482; match to protein family HMM TIGR01970.


ensembl_gene_id: PFL_5419
symbol: fieF
gene_biotype: protein_coding
description:
  Cation diffusion facilitator family transporter FieF; Identified by similarity to SP:P69380; match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: PFL_5421
symbol: PFL_5421
gene_biotype: protein_coding
description:
  Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM PF01047.


ensembl_gene_id: PFL_5423
symbol: rluE
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase E; Identified by similarity to SP:P75966; match to protein family HMM PF00849; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: PFL_5424
symbol: amn
gene_biotype: protein_coding
description:
  AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.


ensembl_gene_id: PFL_5425
symbol: aidB
gene_biotype: protein_coding
description:
  Putative isovaleryl-CoA dehydrogenase/acyl-CoA dehydrogenase; Identified by similarity to SP:P33224; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.


ensembl_gene_id: PFL_5426
symbol: ladS
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by similarity to GB:AAG07361.1; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07695; match to protein family HMM PF07696.


ensembl_gene_id: PFL_5428
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: PFL_5429
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde-2,1-aminomutase; Identified by similarity to SP:P48247; match to protein family HMM PF00202; match to protein family HMM TIGR00713.


ensembl_gene_id: PFL_5432
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-I(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: PFL_5434
symbol: ybeY
gene_biotype: protein_coding
description:
  Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: PFL_5435
symbol: corC
gene_biotype: protein_coding
description:
  Magnesium and cobalt efflux protein CorC; Identified by similarity to SP:P0A2L3; match to protein family HMM PF00571; match to protein family HMM PF03471.


ensembl_gene_id: PFL_5436
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: PFL_5439
symbol: leuS
gene_biotype: protein_coding
description:
  leucine--tRNA ligase; Identified by similarity to SP:P07813; match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: PFL_5440
symbol: lptE
gene_biotype: protein_coding
description:
  Lipoprotein, RplB family; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.


ensembl_gene_id: PFL_5441
symbol: holA
gene_biotype: protein_coding
description:
  DNA polymerase III, delta subunit; Identified by similarity to SP:P28630; match to protein family HMM PF06144; match to protein family HMM TIGR01128.


ensembl_gene_id: PFL_5443
symbol: PFL_5443
gene_biotype: protein_coding
description:
  Lytic murein transglycosylase family protein; Identified by match to protein family HMM PF01471; match to protein family HMM TIGR02283.


ensembl_gene_id: PFL_5445
symbol: lipA-2
gene_biotype: protein_coding
description:
  Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: PFL_5446
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: PFL_5447
symbol: PFL_5447
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF04359; Belongs to the UPF0250 family.


ensembl_gene_id: PFL_5448
symbol: dacA
gene_biotype: protein_coding
description:
  D-alanyl-D-alanine carboxypeptidase DacA; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.


ensembl_gene_id: PFL_5449
symbol: rlpA-2
gene_biotype: protein_coding
description:
  Lipoprotein, RlpA family; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: PFL_5451
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: PFL_5453
symbol: rlmH
gene_biotype: protein_coding
description:
  rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: PFL_5454
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: PFL_5455
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: PFL_5456
symbol: proA
gene_biotype: protein_coding
description:
  Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: PFL_5457
symbol: PFL_5457
gene_biotype: protein_coding
description:
  Putative DNA-3-methyladenine glycosylase; Identified by match to protein family HMM PF02245; Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: PFL_5463
symbol: PFL_5463
gene_biotype: protein_coding
description:
  Peptidase, C13 family; Identified by match to protein family HMM PF01650; match to protein family HMM PF02493.


ensembl_gene_id: PFL_5466
symbol: ubiX
gene_biotype: protein_coding
description:
  Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: PFL_5467
symbol: mpl
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.


ensembl_gene_id: PFL_5468
symbol: PFL_5468
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954.


ensembl_gene_id: PFL_5469
symbol: PFL_5469
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase; Identified by similarity to GB:BAA24014.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_5470
symbol: eutH_1
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein EutH; Identified by similarity to SP:P41796; match to protein family HMM PF04346.


ensembl_gene_id: PFL_5472
symbol: eutBC
gene_biotype: protein_coding
description:
  Ethanolamine ammonia-lyase; Identified by similarity to SP:P19635; similarity to SP:P19636; match to protein family HMM PF06751.


ensembl_gene_id: PFL_5473
symbol: eutB
gene_biotype: protein_coding
description:
  Ethanolamine ammonia-lyase, large subunit; Identified by similarity to SP:P19635; match to protein family HMM PF06751.


ensembl_gene_id: PFL_5474
symbol: eutC
gene_biotype: protein_coding
description:
  Ethanolamine ammonia-lyase, light subunit; Identified by match to protein family HMM PF05985; Belongs to the EutC family.


ensembl_gene_id: PFL_5477
symbol: PFL_5477
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF06167; Belongs to the MtfA family.


ensembl_gene_id: PFL_5478
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: PFL_5480
symbol: cysD-3
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, small subunit; Identified by match to protein family HMM PF01507; match to protein family HMM TIGR02039.


ensembl_gene_id: PFL_5482
symbol: cysNC
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.


ensembl_gene_id: PFL_5483
symbol: PFL_5483
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.


ensembl_gene_id: PFL_5485
symbol: PFL_5485
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: PFL_5490
symbol: PFL_5490
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by similarity to GB:AAG35361.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08659.


ensembl_gene_id: PFL_5491
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: PFL_5501
symbol: nirK
gene_biotype: protein_coding
description:
  Nitrite reductase, copper-containing; Identified by similarity to SP:Q06006; match to protein family HMM PF00127; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376; Belongs to the multicopper oxidase family.


ensembl_gene_id: PFL_5504
symbol: PFL_5504
gene_biotype: protein_coding
description:
  Alpha-2-macroglobulin domain protein; Identified by similarity to SP:P76464; match to protein family HMM PF01835; match to protein family HMM PF07703.


ensembl_gene_id: PFL_5508
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: PFL_5509
symbol: ispA
gene_biotype: protein_coding
description:
  Geranyltranstransferase; Identified by similarity to SP:P22939; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: PFL_5510
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: PFL_5511
symbol: btuB
gene_biotype: protein_coding
description:
  Putative TonB-dependent outermembrane B12 receptor; Receptor; identified by similarity to SP:Q6LLU3; similarity to GB:AAY94717.1; match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: PFL_5514
symbol: ribA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: PFL_5516
symbol: pgpA
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).


ensembl_gene_id: PFL_5517
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: PFL_5518
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: PFL_5520
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: PFL_5521
symbol: ribE-2
gene_biotype: protein_coding
description:
  Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.


ensembl_gene_id: PFL_5523
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: PFL_5525
symbol: PFL_5525
gene_biotype: protein_coding
description:
  Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_5526
symbol: PFL_5526
gene_biotype: protein_coding
description:
  Thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068.


ensembl_gene_id: PFL_5532
symbol: oprG
gene_biotype: protein_coding
description:
  Outer membrane protein OprG; See McPhee et. al. 2009 (PMID: 19486157) for more information; identified by similarity to GB:AAG07454.1; match to protein family HMM PF03922.


ensembl_gene_id: PFL_5533
symbol: PFL_5533
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08659.


ensembl_gene_id: PFL_5534
symbol: PFL_5534
gene_biotype: protein_coding
description:
  Putative dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: PFL_5535
symbol: lhr
gene_biotype: protein_coding
description:
  Putative ATP-dependent helicase; Identified by similarity to SP:P30015; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF08494.


ensembl_gene_id: PFL_5537
symbol: ydhP
gene_biotype: protein_coding
description:
  Transporter, major facilitator family; Identified by similarity to SP:P77389; match to protein family HMM PF07690.


ensembl_gene_id: PFL_5540
symbol: PFL_5540
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase domain protein; Identified by match to protein family HMM PF01761; match to protein family HMM PF09335.


ensembl_gene_id: PFL_5552
symbol: ssb
gene_biotype: protein_coding
description:
  Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: PFL_5554
symbol: uvrA_2
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: PFL_5556
symbol: katA
gene_biotype: protein_coding
description:
  Catalase KatA; Identified by similarity to SP:O52762; match to protein family HMM PF00199; Belongs to the catalase family.


ensembl_gene_id: PFL_5557
symbol: rplQ
gene_biotype: protein_coding
description:
  Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059.


ensembl_gene_id: PFL_5558
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PFL_5559
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: PFL_5560
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: PFL_5561
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: PFL_5562
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: PFL_5563
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: PFL_5564
symbol: rpmD
gene_biotype: protein_coding
description:
  Ribosomal protein L30; Identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308.


ensembl_gene_id: PFL_5565
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: PFL_5566
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: PFL_5567
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: PFL_5568
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: PFL_5569
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: PFL_5570
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: PFL_5571
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: PFL_5572
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: PFL_5573
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: PFL_5574
symbol: rpmC
gene_biotype: protein_coding
description:
  Ribosomal protein L29; Identified by similarity to SP:P02429; match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: PFL_5575
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: PFL_5576
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: PFL_5577
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).


ensembl_gene_id: PFL_5578
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: PFL_5579
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: PFL_5580
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: PFL_5581
symbol: rplD
gene_biotype: protein_coding
description:
  Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.


ensembl_gene_id: PFL_5582
symbol: rplC
gene_biotype: protein_coding
description:
  Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: PFL_5583
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: PFL_5584
symbol: tuf_1
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: PFL_5585
symbol: fusA-2
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: PFL_5586
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: PFL_5588
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PFL_5589
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: PFL_5590
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: PFL_5591
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: PFL_5592
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: PFL_5593
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: PFL_5594
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: PFL_5595
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.


ensembl_gene_id: PFL_5597
symbol: tuf_2
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485.


ensembl_gene_id: PFL_5601
symbol: birA
gene_biotype: protein_coding
description:
  Bifunctional protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.


ensembl_gene_id: PFL_5607
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: PFL_5608
symbol: PFL_5608
gene_biotype: protein_coding
description:
  Peptidase, M23 family; Identified by match to protein family HMM PF01551; match to protein family HMM PF04225; match to protein family HMM PF08525.


ensembl_gene_id: PFL_5609
symbol: anmK
gene_biotype: protein_coding
description:
  anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: PFL_5611
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: PFL_5612
symbol: PFL_5612
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701.


ensembl_gene_id: PFL_5613
symbol: PFL_5613
gene_biotype: protein_coding
description:
  Oxidoreductase, 2-nitropropane dioxygenase family protein; Identified by match to protein family HMM PF03060.


ensembl_gene_id: PFL_5615
symbol: PFL_5615
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: PFL_5617
symbol: coq7
gene_biotype: protein_coding
description:
  2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.


ensembl_gene_id: PFL_5619
symbol: vfr
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding transcriptional regulator Vfr; Identified by similarity to SP:P55222; match to protein family HMM PF00027; match to protein family HMM PF00325.


ensembl_gene_id: PFL_5621
symbol: trpC
gene_biotype: protein_coding
description:
  Indole-3-glycerol phosphate synthase; Identified by similarity to SP:P20577; match to protein family HMM PF00218; Belongs to the TrpC family.


ensembl_gene_id: PFL_5622
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: PFL_5623
symbol: trpG
gene_biotype: protein_coding
description:
  Anthranilate synthase, component II; Identified by similarity to PIR:A01122; match to protein family HMM PF00117; match to protein family HMM TIGR00566.


ensembl_gene_id: PFL_5624
symbol: prbD
gene_biotype: protein_coding
description:
  Proline betaine ABC transporter, ATP-binding protein; Identified by similarity to GB:CAC46836.1; match to protein family HMM PF00005.


ensembl_gene_id: PFL_5625
symbol: prbC
gene_biotype: protein_coding
description:
  Proline betaine ABC transporter, permease protein; Identified by similarity to GB:CAC46835.1; match to protein family HMM PF00528.


ensembl_gene_id: PFL_5626
symbol: prbB
gene_biotype: protein_coding
description:
  Proline betaine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: PFL_5627
symbol: prbA
gene_biotype: protein_coding
description:
  Proline betaine ABC transporter, periplasmic proline betaine-binding protein; Identified by similarity to GB:CAC46833.1; match to protein family HMM PF00496; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_5629
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase, component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concent [...]


ensembl_gene_id: PFL_5630
symbol: gph_2
gene_biotype: protein_coding
description:
  Phosphoglycolate phosphatase, bacterial; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.


ensembl_gene_id: PFL_5631
symbol: rpe
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase; Identified by similarity to SP:P32661; match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: PFL_5635
symbol: PFL_5635
gene_biotype: protein_coding
description:
  Sensory box-containing sigma-54 dependent transcriptional regulator; Identified by similarity to SP:Q46802; match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_5637
symbol: PFL_5637
gene_biotype: protein_coding
description:
  Polyamine ABC transporter, permease protein; Identified by similarity to SP:P31135; match to protein family HMM PF00528.


ensembl_gene_id: PFL_5639
symbol: potA-2
gene_biotype: protein_coding
description:
  Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: PFL_5640
symbol: PFL_5640
gene_biotype: protein_coding
description:
  DNA-binding response regulator, LuxR family; Identified by similarity to SP:P07027; similarity to GB:AAG01455.1; match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: PFL_5641
symbol: PFL_5641
gene_biotype: protein_coding
description:
  Sensory box histidine kinase; Identified by similarity to GB:AAG01454.2; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.


ensembl_gene_id: PFL_5645
symbol: PFL_5645
gene_biotype: protein_coding
description:
  Putative aminoglycoside phosphotransferase; Identified by similarity to GB:AAV66960.1; match to protein family HMM PF01636.


ensembl_gene_id: PFL_5646
symbol: lptD
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.


ensembl_gene_id: PFL_5647
symbol: surA
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.


ensembl_gene_id: PFL_5648
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: PFL_5649
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: PFL_5651
symbol: apaH
gene_biotype: protein_coding
description:
  Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.


ensembl_gene_id: PFL_5652
symbol: glpE
gene_biotype: protein_coding
description:
  Thiosulfate sulfurtransferase; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.


ensembl_gene_id: PFL_5653
symbol: yeaG
gene_biotype: protein_coding
description:
  Protein kinase YeaG; Identified by similarity to SP:P0ACY3; match to protein family HMM PF06798; match to protein family HMM PF08298.


ensembl_gene_id: PFL_5654
symbol: PFL_5654
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF04285; Belongs to the UPF0229 family.


ensembl_gene_id: PFL_5656
symbol: cca
gene_biotype: protein_coding
description:
  Multifunctional CCA protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.


ensembl_gene_id: PFL_5658
symbol: folB_2
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: PFL_5659
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: PFL_5660
symbol: gcp
gene_biotype: protein_coding
description:
  O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: PFL_5661
symbol: rpsU
gene_biotype: protein_coding
description:
  Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: PFL_5662
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: PFL_5663
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: PFL_5664
symbol: PFL_5664
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_5668
symbol: quiA
gene_biotype: protein_coding
description:
  Quinate/shikimate dehydrogenase; Identified by similarity to SP:Q59086; match to protein family HMM PF01011; match to protein family HMM TIGR03074.


ensembl_gene_id: PFL_5672
symbol: pqqF
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein PqqF; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; match to protein family HMM TIGR02110; Belongs to the peptidase M16 family.


ensembl_gene_id: PFL_5675
symbol: pqqC
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.


ensembl_gene_id: PFL_5676
symbol: pqqD
gene_biotype: protein_coding
description:
  Coenzyme PQQ synthesis protein D; Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway.


ensembl_gene_id: PFL_5677
symbol: pqqE
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).


ensembl_gene_id: PFL_5678
symbol: pqqM
gene_biotype: protein_coding
description:
  Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326.


ensembl_gene_id: PFL_5682
symbol: yiiM
gene_biotype: protein_coding
description:
  N-hydroxylated base analog detoxification protein YiiM; Identified by match to protein family HMM PF03473.


ensembl_gene_id: PFL_5683
symbol: pqqH
gene_biotype: protein_coding
description:
  Transcriptional regulator PqqH; Identified by similarity to GB:AAX10031.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_5689
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: PFL_5690
symbol: bioC
gene_biotype: protein_coding
description:
  Biotin biosynthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.


ensembl_gene_id: PFL_5692
symbol: bioF
gene_biotype: protein_coding
description:
  8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.


ensembl_gene_id: PFL_5693
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: PFL_5695
symbol: PFL_5695
gene_biotype: protein_coding
description:
  Molybdate transport transcriptional regulator, ModE family; Identified by similarity to SP:P46930; match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638.


ensembl_gene_id: PFL_5696
symbol: PFL_5696
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409.


ensembl_gene_id: PFL_5697
symbol: rdoA
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase RdoA; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.


ensembl_gene_id: PFL_5698
symbol: rarD_2
gene_biotype: protein_coding
description:
  Protein RarD; Identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688.


ensembl_gene_id: PFL_5700
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: PFL_5702
symbol: PFL_5702
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding domain/CBS domain pair/putative nucleotidyltransferase domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.


ensembl_gene_id: PFL_5703
symbol: PFL_5703
gene_biotype: protein_coding
description:
  Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.


ensembl_gene_id: PFL_5706
symbol: fhuA
gene_biotype: protein_coding
description:
  TonB-dependent outermembrane ferrichrome receptor FhuA; Transducer; identified by similarity to SP:P06971; match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.


ensembl_gene_id: PFL_5710
symbol: yibF
gene_biotype: protein_coding
description:
  Glutathione S-transferase-like protein YibF; Identified by similarity to SP:P0ACA1; match to protein family HMM PF02798.


ensembl_gene_id: PFL_5712
symbol: creC
gene_biotype: protein_coding
description:
  Sensor histidine kinase CreC; Identified by similarity to SP:P08401; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: PFL_5713
symbol: creB
gene_biotype: protein_coding
description:
  DNA-binding response regulator CreB; Identified by similarity to SP:P08368; similarity to SP:P30846; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: PFL_5723
symbol: fdhA
gene_biotype: protein_coding
description:
  Formaldehyde dehydrogenase, glutathione-independent; Identified by similarity to SP:P46154; match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02819.


ensembl_gene_id: PFL_5725
symbol: soxG
gene_biotype: protein_coding
description:
  Sarcosine oxidase, gamma subunit; Identified by similarity to SP:Q46338; match to protein family HMM PF04268; match to protein family HMM TIGR01375.


ensembl_gene_id: PFL_5726
symbol: soxA
gene_biotype: protein_coding
description:
  Sarcosine oxidase, alpha subunit; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372; Belongs to the GcvT family.


ensembl_gene_id: PFL_5727
symbol: soxD
gene_biotype: protein_coding
description:
  Sarcosine oxidase, delta subunit; Identified by similarity to SP:Q46336; match to protein family HMM PF04267; match to protein family HMM TIGR01374.


ensembl_gene_id: PFL_5728
symbol: soxB
gene_biotype: protein_coding
description:
  Sarcosine oxidase, beta subunit; Identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373.


ensembl_gene_id: PFL_5731
symbol: ltaE
gene_biotype: protein_coding
description:
  L-threonine aldolase, low-specificity; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.


ensembl_gene_id: PFL_5734
symbol: PFL_5734
gene_biotype: protein_coding
description:
  Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.


ensembl_gene_id: PFL_5737
symbol: PFL_5737
gene_biotype: protein_coding
description:
  Putative electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P94550; match to protein family HMM PF01012.


ensembl_gene_id: PFL_5738
symbol: PFL_5738
gene_biotype: protein_coding
description:
  Putative electron transfer flavoprotein, alpha subunit; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.


ensembl_gene_id: PFL_5740
symbol: PFL_5740
gene_biotype: protein_coding
description:
  Oxidoreductase, FAD/FMN dependent; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992.


ensembl_gene_id: PFL_5746
symbol: PFL_5746
gene_biotype: protein_coding
description:
  Uracil/xanthine permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173.


ensembl_gene_id: PFL_5752
symbol: PFL_5752
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR03414.


ensembl_gene_id: PFL_5754
symbol: lcdH
gene_biotype: protein_coding
description:
  3-hydroxyacyl-CoA dehydrogenase family protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.


ensembl_gene_id: PFL_5756
symbol: PFL_5756
gene_biotype: protein_coding
description:
  Gamma-butyrobetaine dioxygenase; Identified by match to protein family HMM PF02668; match to protein family HMM TIGR02409.


ensembl_gene_id: PFL_5759
symbol: aacA7
gene_biotype: protein_coding
description:
  Aminoglycoside N(6')-acetyltransferase type 1; Catalyzes the transfer of an acetyl group from acetyl-CoA to the 6'-amino group of aminoglycoside molecules conferring resistance to antibiotics containing the purpurosamine ring.


ensembl_gene_id: PFL_5760
symbol: gbdR
gene_biotype: protein_coding
description:
  Transcriptional regulator GbdR; Identified by similarity to GB:AAG08765.1; match to protein family HMM PF00165; match to protein family HMM PF01965.


ensembl_gene_id: PFL_5761
symbol: sdaA
gene_biotype: protein_coding
description:
  L-serine ammonia-lyase 1; Identified by similarity to SP:P16095; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: PFL_5763
symbol: choW
gene_biotype: protein_coding
description:
  Choline ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR03416.


ensembl_gene_id: PFL_5764
symbol: choV
gene_biotype: protein_coding
description:
  Choline ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186; match to protein family HMM TIGR03415.


ensembl_gene_id: PFL_5765
symbol: PFL_5765
gene_biotype: protein_coding
description:
  Transporter, betaine/carnitine/choline family; Identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: PFL_5766
symbol: betI
gene_biotype: protein_coding
description:
  Transcriptional repressor BetI; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity).


ensembl_gene_id: PFL_5767
symbol: betB
gene_biotype: protein_coding
description:
  Betaine-aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.


ensembl_gene_id: PFL_5768
symbol: betA
gene_biotype: protein_coding
description:
  Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.


ensembl_gene_id: PFL_5772
symbol: dbpA
gene_biotype: protein_coding
description:
  ATP-independent RNA helicase DbpA; Identified by similarity to SP:P21693; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family.


ensembl_gene_id: PFL_5773
symbol: PFL_5773
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275.


ensembl_gene_id: PFL_5774
symbol: PFL_5774
gene_biotype: protein_coding
description:
  Integral membrane protein, YccS/YhfK family; Identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667.


ensembl_gene_id: PFL_5778
symbol: PFL_5778
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:P42597; match to protein family HMM PF01863.


ensembl_gene_id: PFL_5779
symbol: PFL_5779
gene_biotype: protein_coding
description:
  Response regulator/sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_5781
symbol: fba
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: PFL_5784
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Identified by similarity to SP:P11665; match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: PFL_5785
symbol: epd
gene_biotype: protein_coding
description:
  D-erythrose-4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate.


ensembl_gene_id: PFL_5786
symbol: tkt
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: PFL_5787
symbol: PFL_5787
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family/methyltransferase domain protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: PFL_5788
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: PFL_5789
symbol: ligA-2
gene_biotype: protein_coding
description:
  NAD-dependent DNA ligase adenylation domain protein; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily.


ensembl_gene_id: PFL_5790
symbol: PFL_5790
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:P42616; match to protein family HMM PF06476.


ensembl_gene_id: PFL_5792
symbol: PFL_5792
gene_biotype: protein_coding
description:
  Transglycosylase, MltA family; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.


ensembl_gene_id: PFL_5795
symbol: nhaP
gene_biotype: protein_coding
description:
  Na+:H+ antiporter NhaP; Identified by similarity to GB:BAA31695.1; match to protein family HMM PF00999.


ensembl_gene_id: PFL_5798
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: PFL_5799
symbol: metF
gene_biotype: protein_coding
description:
  Methylenetetrahydrofolate reductase (NAD(P)H); Identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: PFL_5801
symbol: rhlE_2
gene_biotype: protein_coding
description:
  Putative ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.


ensembl_gene_id: PFL_5804
symbol: bioA
gene_biotype: protein_coding
description:
  Adenosylmethionine-8-amino-7-oxononanoate transaminase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.


ensembl_gene_id: PFL_5805
symbol: PFL_5805
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: PFL_5806
symbol: PFL_5806
gene_biotype: protein_coding
description:
  Glutamate/aspartate periplasmic-binding protein, GltI family; Identified by similarity to SP:P37902; match to protein family HMM PF00497.


ensembl_gene_id: PFL_5810
symbol: PFL_5810
gene_biotype: protein_coding
description:
  Channel protein, hemolysin III family; Identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065.


ensembl_gene_id: PFL_5811
symbol: mdcR
gene_biotype: protein_coding
description:
  Malonate utilization transcriptional regulator; Identified by similarity to GB:AAC45461.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_5812
symbol: madM
gene_biotype: protein_coding
description:
  Malonate transporter, MadM subunit; Identified by similarity to GB:AAC45408.1; match to protein family HMM PF03818; match to protein family HMM TIGR00808.


ensembl_gene_id: PFL_5813
symbol: madL
gene_biotype: protein_coding
description:
  Malonate transporter, MadL subunit; Identified by similarity to GB:AAC45407.1; match to protein family HMM PF03817; match to protein family HMM TIGR00807.


ensembl_gene_id: PFL_5814
symbol: mdcH
gene_biotype: protein_coding
description:
  Malonate decarboxylase, epsilon subunit; Identified by similarity to GB:BAA36210.1; match to protein family HMM PF00698; match to protein family HMM TIGR03131.


ensembl_gene_id: PFL_5815
symbol: mdcG
gene_biotype: protein_coding
description:
  holo-ACP synthase, malonate decarboxylase-specific; Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-[acyl-carrier-protein] of the malonate decarboxylase to yield holo-[acyl-carrier-protein]; Belongs to the MdcG family.


ensembl_gene_id: PFL_5816
symbol: mdcE
gene_biotype: protein_coding
description:
  Malonate decarboxylase, gamma subunit; Identified by similarity to GB:BAA36208.1; match to protein family HMM PF06833; match to protein family HMM TIGR03134.


ensembl_gene_id: PFL_5818
symbol: mdcC
gene_biotype: protein_coding
description:
  Malonate decarboxylase acyl carrier protein; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism.


ensembl_gene_id: PFL_5819
symbol: mdcB
gene_biotype: protein_coding
description:
  triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.


ensembl_gene_id: PFL_5821
symbol: PFL_5821
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF08719; match to protein family HMM TIGR02464.


ensembl_gene_id: PFL_5822
symbol: chpC
gene_biotype: protein_coding
description:
  Chemosensory protein ChpC; Identified by similarity to GB:AAC23933.1; match to protein family HMM PF01584.


ensembl_gene_id: PFL_5823
symbol: chpA
gene_biotype: protein_coding
description:
  Putative sensor histidine kinase/response regulator ChpA; Identified by similarity to GB:AAC23931.2; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.


ensembl_gene_id: PFL_5824
symbol: pilJ
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilJ; Identified by similarity to SP:P42257; match to protein family HMM PF00015.


ensembl_gene_id: PFL_5825
symbol: pilI
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilI; Identified by similarity to SP:P43502; match to protein family HMM PF01584.


ensembl_gene_id: PFL_5826
symbol: pilH
gene_biotype: protein_coding
description:
  Type IV pilus response regulator PilH; Identified by similarity to SP:P43501; match to protein family HMM PF00072.


ensembl_gene_id: PFL_5827
symbol: pilG
gene_biotype: protein_coding
description:
  Type IV pilus response regulator PilG; Identified by similarity to SP:P46384; match to protein family HMM PF00072.


ensembl_gene_id: PFL_5828
symbol: gshB
gene_biotype: protein_coding
description:
  Glutathione synthase; Identified by similarity to SP:P04425; match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: PFL_5829
symbol: tonB3
gene_biotype: protein_coding
description:
  Type IV pilus associated protein TonB3; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to GB:AAG03795.1; match to protein family HMM TIGR01352.


ensembl_gene_id: PFL_5830
symbol: PFL_5830
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAG15555.1; match to protein family HMM PF02622; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: PFL_5831
symbol: PFL_5831
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: PFL_5832
symbol: pyrR
gene_biotype: protein_coding
description:
  Putative PyrR bifunctional protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.


ensembl_gene_id: PFL_5833
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Identified by similarity to SP:P56585; match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: PFL_5834
symbol: pyrC-2
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Identified by similarity to SP:Q59712; match to protein family HMM PF01979; match to protein family HMM TIGR00857.


ensembl_gene_id: PFL_5837
symbol: pilT
gene_biotype: protein_coding
description:
  Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.


ensembl_gene_id: PFL_5838
symbol: PFL_5838
gene_biotype: protein_coding
description:
  Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: PFL_5839
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: PFL_5841
symbol: PFL_5841
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251; Belongs to the UPF0235 family.


ensembl_gene_id: PFL_5842
symbol: metX
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.


ensembl_gene_id: PFL_5843
symbol: metW
gene_biotype: protein_coding
description:
  Methionine biosynthesis protein; Identified by match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM TIGR02081.


ensembl_gene_id: PFL_5845
symbol: rdgB
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase RdgB; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: PFL_5846
symbol: PFL_5846
gene_biotype: protein_coding
description:
  Putative coproporphyrinogen dehydrogenase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: PFL_5848
symbol: kptA
gene_biotype: protein_coding
description:
  RNA 2'-phosphotransferase, KptA family; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.


ensembl_gene_id: PFL_5849
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: PFL_5850
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: PFL_5851
symbol: thiS
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683.


ensembl_gene_id: PFL_5853
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: PFL_5854
symbol: rpoH
gene_biotype: protein_coding
description:
  Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: PFL_5855
symbol: ftsX
gene_biotype: protein_coding
description:
  Putative cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: PFL_5856
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: PFL_5857
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: PFL_5860
symbol: PFL_5860
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmD family; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family.


ensembl_gene_id: PFL_5865
symbol: calB
gene_biotype: protein_coding
description:
  Coniferyl aldehyde dehydrogenase; Identified by similarity to GB:CAA06926.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_5867
symbol: PFL_5867
gene_biotype: protein_coding
description:
  Oxidoreductase, GMC family; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199.


ensembl_gene_id: PFL_5868
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: PFL_5869
symbol: PFL_5869
gene_biotype: protein_coding
description:
  Ferredoxin, 4Fe-4S; Identified by similarity to SP:P00208; similarity to PDB:2FGO_A; match to protein family HMM PF00037.


ensembl_gene_id: PFL_5870
symbol: mutM
gene_biotype: protein_coding
description:
  DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: PFL_5877
symbol: ilvD
gene_biotype: protein_coding
description:
  Dihydroxy-acid dehydratase; Identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110; Belongs to the IlvD/Edd family.


ensembl_gene_id: PFL_5880
symbol: PFL_5880
gene_biotype: protein_coding
description:
  Putative alginate biosynthesis protein AlgI; Identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: PFL_5881
symbol: pchP
gene_biotype: protein_coding
description:
  Phosphorylcholine phosphatase; See Massimelli et al 2005 (PMID: 15886911) for more information; identified by similarity to GB:AAG08677.1.


ensembl_gene_id: PFL_5882
symbol: tcyP
gene_biotype: protein_coding
description:
  sodium:L-cystine symporter TcyP; Identified by similarity to SP:P54596; match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: PFL_5883
symbol: folA
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: PFL_5885
symbol: PFL_5885
gene_biotype: protein_coding
description:
  Putative small GTP-binding protein domain protein; Identified by match to protein family HMM PF01926.


ensembl_gene_id: PFL_5886
symbol: PFL_5886
gene_biotype: protein_coding
description:
  Phosphonate degradation operons associated HDIG domain protein; Identified by match to protein family HMM TIGR00277; match to protein family HMM TIGR03276.


ensembl_gene_id: PFL_5887
symbol: PFL_5887
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase, TIGR03364 family; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR03364.


ensembl_gene_id: PFL_5888
symbol: PFL_5888
gene_biotype: protein_coding
description:
  Iron(III) transport system substrate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR03261.


ensembl_gene_id: PFL_5889
symbol: PFL_5889
gene_biotype: protein_coding
description:
  Putative 2-aminoethylphosphonate ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR03262.


ensembl_gene_id: PFL_5890
symbol: PFL_5890
gene_biotype: protein_coding
description:
  Putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR03265; Belongs to the ABC transporter superfamily.


ensembl_gene_id: PFL_5891
symbol: PFL_5891
gene_biotype: protein_coding
description:
  Aminoethylphosphonate catabolism associated LysR family transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR03339; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_5892
symbol: cadA_1
gene_biotype: protein_coding
description:
  Cadmium-exporting ATPase; Identified by similarity to GB:AAK48831.1; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.


ensembl_gene_id: PFL_5893
symbol: cadR
gene_biotype: protein_coding
description:
  Cd(II)/Pb(II)-responsive transcriptional regulator; Identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02047.


ensembl_gene_id: PFL_5895
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: PFL_5896
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: PFL_5899
symbol: ptsP-2
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; Identified by similarity to GB:AAV66957.1; match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: PFL_5900
symbol: rppH
gene_biotype: protein_coding
description:
  RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: PFL_5903
symbol: PFL_5903
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: PFL_5906
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: PFL_5911
symbol: serA
gene_biotype: protein_coding
description:
  Putative phosphoglycerate dehydrogenase; Identified by similarity to SP:P0A9T0; match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: PFL_5913
symbol: PFL_5913
gene_biotype: protein_coding
description:
  Periplasmic amino acid-binding protein, PAAT family; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: PFL_5925
symbol: potF2
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, periplasmic putrescine-binding protein; Identified by similarity to GB:AAK15488.1; match to protein family HMM PF01547.


ensembl_gene_id: PFL_5926
symbol: potF1
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, periplasmic putrescine-binding protein; Identified by similarity to GB:AAK15487.1; match to protein family HMM PF01547.


ensembl_gene_id: PFL_5927
symbol: PFL_5927
gene_biotype: protein_coding
description:
  Aminotransferase; Identified by similarity to GB:AAK15486.1; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: PFL_5929
symbol: PFL_5929
gene_biotype: protein_coding
description:
  Putative gamma-glutamyl-gamma-aminobutyrate hydrolase; Identified by similarity to SP:P76038; match to protein family HMM PF07722.


ensembl_gene_id: PFL_5930
symbol: puuA-2
gene_biotype: protein_coding
description:
  Putative glutamate--putrescine ligase; Identified by similarity to SP:P78061; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.


ensembl_gene_id: PFL_5932
symbol: coaA
gene_biotype: protein_coding
description:
  Pantothenate kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00554.


ensembl_gene_id: PFL_5933
symbol: ssuF
gene_biotype: protein_coding
description:
  Molybdenum-pterin binding domain protein; Identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638.


ensembl_gene_id: PFL_5935
symbol: ssuC
gene_biotype: protein_coding
description:
  Aliphatic sulfonates ABC transporter, permease protein; Identified by similarity to GB:AAC31906.1; match to protein family HMM PF00528.


ensembl_gene_id: PFL_5936
symbol: ssuD
gene_biotype: protein_coding
description:
  Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.


ensembl_gene_id: PFL_5937
symbol: ssuA
gene_biotype: protein_coding
description:
  Aliphatic sulfonates ABC transporter, periplasmic sulfonate-binding protein; Identified by similarity to GB:AAC31904.1; match to protein family HMM PF04069; match to protein family HMM TIGR01728.


ensembl_gene_id: PFL_5938
symbol: ssuE
gene_biotype: protein_coding
description:
  NADH-dependent FMN reductase; Identified by similarity to SP:O85762; match to protein family HMM PF02525; match to protein family HMM PF03358; match to protein family HMM TIGR03567.


ensembl_gene_id: PFL_5939
symbol: lsfA
gene_biotype: protein_coding
description:
  Thiol-specific antioxidant protein LsfA; Identified by similarity to GB:ABJ12706.1; match to protein family HMM PF00578; match to protein family HMM PF08534.


ensembl_gene_id: PFL_5940
symbol: oprE
gene_biotype: protein_coding
description:
  Outer membrane porin OprE; Identified by similarity to GB:BAA02207.1; match to protein family HMM PF03573.


ensembl_gene_id: PFL_5941
symbol: argA
gene_biotype: protein_coding
description:
  Amino-acid N-acetyltransferase; Identified by match to protein family HMM PF00583; match to protein family HMM PF00696; match to protein family HMM TIGR01890.


ensembl_gene_id: PFL_5946
symbol: PFL_5946
gene_biotype: protein_coding
description:
  Type II/IV secretion system protein; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.


ensembl_gene_id: PFL_5951
symbol: phlH
gene_biotype: protein_coding
description:
  2,4-diacetylphloroglucinol biosynthesis regulator PhlH; Previously identified and sequenced. See Schnider-Keel et al 2000 (PMID: 10671440) for more information; identified by similarity to GB:AAF20930.1; match to protein family HMM PF00440; match to protein family HMM PF09209.


ensembl_gene_id: PFL_5952
symbol: phlG
gene_biotype: protein_coding
description:
  2,4-diacetylphloroglucinol specific hydrolase PhlG; Previously identified and sequenced. See Bottiglieri and Keel 2006 (PMID: 16391073) for more information; identified by similarity to GB:AAF20929.2.


ensembl_gene_id: PFL_5953
symbol: phlF
gene_biotype: protein_coding
description:
  Transcriptional repressor PhlF; Previously identified and sequenced. See Schnider-Keel et al 2000 (PMID: 10671440) for more information; identified by similarity to GB:AAF20928.1; match to protein family HMM PF00440.


ensembl_gene_id: PFL_5954
symbol: phlA
gene_biotype: protein_coding
description:
  2,4-diacetylphloroglucinol biosynthesis protein PhlA; Previously identified and sequenced. See Schnider-Keel et al 2000 (PMID: 10671440) for more information; identified by similarity to GB:AAF20927.1; match to protein family HMM PF08541.


ensembl_gene_id: PFL_5956
symbol: phlB
gene_biotype: protein_coding
description:
  2,4-diacetylphloroglucinol biosynthesis protein PhlB; Identified by similarity to GB:AAB48107.1; match to protein family HMM PF01796.


ensembl_gene_id: PFL_5957
symbol: phlD
gene_biotype: protein_coding
description:
  Type III polyketide synthase PhlD; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797; match to protein family HMM PF08541.


ensembl_gene_id: PFL_5958
symbol: phlE
gene_biotype: protein_coding
description:
  Putative permease PhlE; Identified by similarity to GB:CAD65845.1; match to protein family HMM PF07690.


ensembl_gene_id: PFL_5963
symbol: PFL_5963
gene_biotype: protein_coding
description:
  Ferric iron ABC transporter, FeT family, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: PFL_5964
symbol: PFL_5964
gene_biotype: protein_coding
description:
  Ferric iron ABC transporter, FeT family, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547.


ensembl_gene_id: PFL_5965
symbol: PFL_5965
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein; Identified by similarity to SP:P75728; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988.


ensembl_gene_id: PFL_5967
symbol: ubiH
gene_biotype: protein_coding
description:
  2-polyprenyl-6-methoxyphenol 4-hydroxylase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988.


ensembl_gene_id: PFL_5968
symbol: pepP
gene_biotype: protein_coding
description:
  Xaa-Pro aminopeptidase; Identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195.


ensembl_gene_id: PFL_5969
symbol: PFL_5969
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF03695; Belongs to the UPF0149 family.


ensembl_gene_id: PFL_5970
symbol: zapA
gene_biotype: protein_coding
description:
  Putative cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: PFL_5971
symbol: PFL_5971
gene_biotype: protein_coding
description:
  5-formyltetrahydrofolate cyclo-ligase; Identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: PFL_5974
symbol: PFL_5974
gene_biotype: protein_coding
description:
  Putative ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.


ensembl_gene_id: PFL_5976
symbol: PFL_5976
gene_biotype: protein_coding
description:
  Putative flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: PFL_5978
symbol: PFL_5978
gene_biotype: protein_coding
description:
  ChaC-like protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.


ensembl_gene_id: PFL_5979
symbol: PFL_5979
gene_biotype: protein_coding
description:
  2Fe-2S iron-sulfur cluster binding domain/oxidoreductase NAD-binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175.


ensembl_gene_id: PFL_5980
symbol: ubiD
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.


ensembl_gene_id: PFL_5981
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: PFL_5982
symbol: trxA
gene_biotype: protein_coding
description:
  Thioredoxin; Identified by similarity to SP:P00274; match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.


ensembl_gene_id: PFL_5983
symbol: ppx
gene_biotype: protein_coding
description:
  Exopolyphosphatase; Identified by similarity to SP:Q9ZN70; match to protein family HMM PF02541; Belongs to the GppA/Ppx family.


ensembl_gene_id: PFL_5984
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: PFL_5985
symbol: hemB_2
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; Identified by similarity to SP:Q59643; match to protein family HMM PF00490; Belongs to the ALAD family.


ensembl_gene_id: PFL_5988
symbol: elbB
gene_biotype: protein_coding
description:
  Enhancing lycopene biosynthesis protein 2; Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate; Belongs to the peptidase C56 family.


ensembl_gene_id: PFL_5990
symbol: PFL_5990
gene_biotype: protein_coding
description:
  Cytochrome c/iron permease family protein; Identified by match to protein family HMM PF00034; match to protein family HMM PF03239.


ensembl_gene_id: PFL_5991
symbol: rhtB
gene_biotype: protein_coding
description:
  Homoserine/homoserine lactone efflux protein; Identified by similarity to SP:P0AG37; match to protein family HMM PF01810.


ensembl_gene_id: PFL_5994
symbol: PFL_5994
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF09523; match to protein family HMM TIGR02444.


ensembl_gene_id: PFL_5996
symbol: PFL_5996
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by similarity to SP:P30417; match to protein family HMM PF00254.


ensembl_gene_id: PFL_5997
symbol: algQ
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein AlgQ; Identified by similarity to SP:P15275; match to protein family HMM PF04353; Belongs to the Rsd/AlgQ family.


ensembl_gene_id: PFL_5999
symbol: hemY
gene_biotype: protein_coding
description:
  Putative HemY protein; Identified by match to protein family HMM PF07219; match to protein family HMM PF07721.


ensembl_gene_id: PFL_6001
symbol: hemD
gene_biotype: protein_coding
description:
  uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: PFL_6002
symbol: hemC
gene_biotype: protein_coding
description:
  Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: PFL_6003
symbol: algR
gene_biotype: protein_coding
description:
  DNA-binding response regulator AlgR; Identified by similarity to GB:AAD31823.1; match to protein family HMM PF00072; match to protein family HMM PF04397.


ensembl_gene_id: PFL_6004
symbol: argH
gene_biotype: protein_coding
description:
  Argininosuccinate lyase; Identified by similarity to SP:P50987; match to protein family HMM PF00206; match to protein family HMM TIGR00838.


ensembl_gene_id: PFL_6005
symbol: PFL_6005
gene_biotype: protein_coding
description:
  Glutathione S-transferase; Identified by similarity to SP:P82998; match to protein family HMM PF02798.


ensembl_gene_id: PFL_6007
symbol: PFL_6007
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF09653; match to protein family HMM TIGR02647.


ensembl_gene_id: PFL_6008
symbol: cyaA
gene_biotype: protein_coding
description:
  Adenylate cyclase, class I; Identified by similarity to SP:P00936; match to protein family HMM PF01295.


ensembl_gene_id: PFL_6009
symbol: rnk
gene_biotype: protein_coding
description:
  Regulator of nucleoside diphosphate kinase; Identified by similarity to SP:P0AFW4; match to protein family HMM PF01272.


ensembl_gene_id: PFL_6010
symbol: cyaY
gene_biotype: protein_coding
description:
  Iron donor protein CyaY; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.


ensembl_gene_id: PFL_6015
symbol: sss
gene_biotype: protein_coding
description:
  Site-specific recombinase Sss; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: PFL_6018
symbol: PFL_6018
gene_biotype: protein_coding
description:
  Secondary thiamine-phosphate synthase enzyme; Identified by similarity to SP:P0AF48; match to protein family HMM PF01894; match to protein family HMM TIGR00149.


ensembl_gene_id: PFL_6019
symbol: amtB
gene_biotype: protein_coding
description:
  Ammonium transporter; Identified by similarity to SP:P69681; match to protein family HMM PF00909; match to protein family HMM TIGR00836.


ensembl_gene_id: PFL_6020
symbol: glnK
gene_biotype: protein_coding
description:
  Nitrogen regulatory protein P-II; Identified by similarity to SP:P0AC55; match to protein family HMM PF00543; Belongs to the P(II) protein family.


ensembl_gene_id: PFL_6022
symbol: PFL_6022
gene_biotype: protein_coding
description:
  Mg-chelatase subunits D/I family, ComM subfamily protein; Identified by similarity to SP:P45049; match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368.


ensembl_gene_id: PFL_6029
symbol: PFL_6029
gene_biotype: protein_coding
description:
  Putative multidrug resistance protein NorM; Identified by similarity to SP:Q9F5N7; match to protein family HMM PF01554; match to protein family HMM TIGR00797.


ensembl_gene_id: PFL_6030
symbol: PFL_6030
gene_biotype: protein_coding
description:
  Diguanylate cyclase (GGDEF) domain/cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: PFL_6031
symbol: rep
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.


ensembl_gene_id: PFL_6032
symbol: xpt
gene_biotype: protein_coding
description:
  Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.


ensembl_gene_id: PFL_6035
symbol: puuR
gene_biotype: protein_coding
description:
  HTH-type transcriptional regulator PuuR; Identified by similarity to SP:P0A9U7; match to protein family HMM PF01381; match to protein family HMM PF07883.


ensembl_gene_id: PFL_6036
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: PFL_6039
symbol: lrp
gene_biotype: protein_coding
description:
  Leucine-responsive regulatory protein; Identified by similarity to SP:P0ACJ4; match to protein family HMM PF01037.


ensembl_gene_id: PFL_6046
symbol: PFL_6046
gene_biotype: protein_coding
description:
  Identified by similarity to SP:P23883; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: PFL_6048
symbol: rpmG
gene_biotype: protein_coding
description:
  Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: PFL_6049
symbol: rpmB
gene_biotype: protein_coding
description:
  Ribosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: PFL_6051
symbol: radC
gene_biotype: protein_coding
description:
  DNA repair protein RadC; Identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.


ensembl_gene_id: PFL_6052
symbol: coaBC
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: PFL_6053
symbol: dut
gene_biotype: protein_coding
description:
  dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: PFL_6054
symbol: algC
gene_biotype: protein_coding
description:
  Phosphomannomutase/phosphoglucomutase; Identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.


ensembl_gene_id: PFL_6055
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: PFL_6056
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: PFL_6057
symbol: PFL_6057
gene_biotype: protein_coding
description:
  Putative exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633.


ensembl_gene_id: PFL_6059
symbol: rph
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: PFL_6060
symbol: PFL_6060
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.


ensembl_gene_id: PFL_6062
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: PFL_6063
symbol: spoT
gene_biotype: protein_coding
description:
  Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: PFL_6064
symbol: PFL_6064
gene_biotype: protein_coding
description:
  Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.


ensembl_gene_id: PFL_6066
symbol: PFL_6066
gene_biotype: protein_coding
description:
  ActC family protein; Identified by similarity to GB:AAK38651.1; match to protein family HMM PF01370; match to protein family HMM PF07993.


ensembl_gene_id: PFL_6067
symbol: exbB1
gene_biotype: protein_coding
description:
  TonB system transport protein ExbB1; Identified by match to protein family HMM PF01618; match to protein family HMM TIGR02797.


ensembl_gene_id: PFL_6068
symbol: exbD1
gene_biotype: protein_coding
description:
  TonB system transport protein ExbD1; Identified by match to protein family HMM PF02472; match to protein family HMM TIGR02803.


ensembl_gene_id: PFL_6069
symbol: tonB1
gene_biotype: protein_coding
description:
  Periplasmic energy transduction protein TonB1; Identified by similarity to SP:Q05613; match to protein family HMM PF03544; match to protein family HMM TIGR01352.


ensembl_gene_id: PFL_6070
symbol: oxyR
gene_biotype: protein_coding
description:
  Oxidative stress regulatory protein OxyR; Identified by similarity to GB:AAK72465.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: PFL_6071
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: PFL_6074
symbol: tagQ
gene_biotype: protein_coding
description:
  Putative type VI secretion-associated lipoprotein TagQ; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03460.1; match to protein family HMM PF05433.


ensembl_gene_id: PFL_6075
symbol: tagR
gene_biotype: protein_coding
description:
  Type VI secretion posttranslational regulatory protein TagR; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03461.1; match to protein family HMM PF03781.


ensembl_gene_id: PFL_6076
symbol: tagS
gene_biotype: protein_coding
description:
  Putative Lol-like lipoprotein-translocating system, transmembrane protein TagS; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03462.1; match to protein family HMM PF02687.


ensembl_gene_id: PFL_6077
symbol: tagT
gene_biotype: protein_coding
description:
  Putative Lol-like lipoprotein-translocating system, ATP-binding protein TagT; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03463.1; match to protein family HMM PF00005.


ensembl_gene_id: PFL_6078
symbol: ppkA
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase PpkA; Identified by similarity to GB:AAG03464.1; match to protein family HMM PF00069.


ensembl_gene_id: PFL_6079
symbol: pppA
gene_biotype: protein_coding
description:
  Serine/threonine phosphoprotein phosphatase PppA; Identified by similarity to GB:AAG03465.1; match to protein family HMM PF00481.


ensembl_gene_id: PFL_6080
symbol: tagF
gene_biotype: protein_coding
description:
  Type VI secretion-associated protein TagF; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03466.1; match to protein family HMM TIGR03373.


ensembl_gene_id: PFL_6081
symbol: tssM
gene_biotype: protein_coding
description:
  Type VI secretion protein TssM; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03467.1; match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348.


ensembl_gene_id: PFL_6082
symbol: tssL
gene_biotype: protein_coding
description:
  Type VI secretion protein TssL; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03468.1; match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350.


ensembl_gene_id: PFL_6083
symbol: tssK
gene_biotype: protein_coding
description:
  Type VI secretion protein TssK; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03469.1; match to protein family HMM PF05936; match to protein family HMM TIGR03353.


ensembl_gene_id: PFL_6084
symbol: tssJ
gene_biotype: protein_coding
description:
  Type VI secretion lipoprotein TssJ; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03470.1; match to protein family HMM TIGR03352.


ensembl_gene_id: PFL_6085
symbol: fha
gene_biotype: protein_coding
description:
  Type VI secretion protein Fha; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03471.1; match to protein family HMM PF00498; match to protein family HMM TIGR03354.


ensembl_gene_id: PFL_6086
symbol: tssA
gene_biotype: protein_coding
description:
  Type VI secretion protein TssA; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03472.1; match to protein family HMM PF06812; match to protein family HMM TIGR03363.


ensembl_gene_id: PFL_6087
symbol: tssB
gene_biotype: protein_coding
description:
  Type VI secretion protein TssB; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03473.1; match to protein family HMM PF05591; match to protein family HMM TIGR03358.


ensembl_gene_id: PFL_6088
symbol: tssC
gene_biotype: protein_coding
description:
  Type VI secretion protein TssC; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03474.1; match to protein family HMM PF05943; match to protein family HMM TIGR03355.


ensembl_gene_id: PFL_6089
symbol: hcp
gene_biotype: protein_coding
description:
  Type VI secretion system effector Hcp; Identified by similarity to GB:AAG03475.1; match to protein family HMM PF05638; match to protein family HMM TIGR03344.


ensembl_gene_id: PFL_6090
symbol: tssE
gene_biotype: protein_coding
description:
  Type VI secretion protein TssE; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03477.1; match to protein family HMM PF04965; match to protein family HMM TIGR03357.


ensembl_gene_id: PFL_6091
symbol: tssF
gene_biotype: protein_coding
description:
  Type VI secretion protein TssF; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03478.1; match to protein family HMM PF05947; match to protein family HMM TIGR03359.


ensembl_gene_id: PFL_6092
symbol: tssG
gene_biotype: protein_coding
description:
  Type VI secretion protein TssG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03479.1; match to protein family HMM PF06996; match to protein family HMM TIGR03347.


ensembl_gene_id: PFL_6093
symbol: clpV
gene_biotype: protein_coding
description:
  Type VI secretion ATPase ClpV; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to SP:Q9I742; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345; Belongs to the ClpA/ClpB family.


ensembl_gene_id: PFL_6094
symbol: vgrG
gene_biotype: protein_coding
description:
  Type VI secretion protein VgrG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03481.1; match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361.


ensembl_gene_id: PFL_6096
symbol: PFL_6096
gene_biotype: protein_coding
description:
  Rhs family protein; Identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643; match to protein family HMM TIGR03696.


ensembl_gene_id: PFL_6102
symbol: hupA
gene_biotype: protein_coding
description:
  DNA-binding protein HU, alpha subunit; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: PFL_6103
symbol: rubB
gene_biotype: protein_coding
description:
  rubredoxin-NAD(+) reductase; Identified by similarity to SP:P42454; match to protein family HMM PF00070; match to protein family HMM PF07992; Belongs to the FAD-dependent oxidoreductase family.


ensembl_gene_id: PFL_6105
symbol: ubiC
gene_biotype: protein_coding
description:
  Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.


ensembl_gene_id: PFL_6106
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: PFL_6108
symbol: phoB
gene_biotype: protein_coding
description:
  Phosphate regulon transcriptional regulatory protein PhoB; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154.


ensembl_gene_id: PFL_6109
symbol: phoR
gene_biotype: protein_coding
description:
  Phosphate regulon sensor kinase PhoR; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR02966.


ensembl_gene_id: PFL_6115
symbol: phoU
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: PFL_6116
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: PFL_6117
symbol: pstA
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstA; Identified by similarity to GB:BAA08136.1; match to protein family HMM PF00528; match to protein family HMM TIGR00974.


ensembl_gene_id: PFL_6118
symbol: pstC
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein; See Wu et al 1999 (PMID: 16232467) for more information; identified by similarity to GB:BAA75655.1; match to protein family HMM PF00528.


ensembl_gene_id: PFL_6119
symbol: pstS
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, periplasmic phosphate-binding protein; Identified by match to protein family HMM TIGR02136.


ensembl_gene_id: PFL_6125
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: PFL_6126
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: PFL_6128
symbol: aspA
gene_biotype: protein_coding
description:
  Aspartate ammonia-lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00839.


ensembl_gene_id: PFL_6133
symbol: PFL_6133
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: PFL_6139
symbol: agcS
gene_biotype: protein_coding
description:
  Amino acid carrier protein; Identified by similarity to SP:Q45068; match to protein family HMM PF01235; match to protein family HMM TIGR00835.


ensembl_gene_id: PFL_6146
symbol: potF
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, periplasmic putrescine-binding protein; Identified by match to protein family HMM PF01547.


ensembl_gene_id: PFL_6149
symbol: PFL_6149
gene_biotype: protein_coding
description:
  Putative negative regulatory protein; Identified by similarity to SP:P21341; match to protein family HMM PF04299.


ensembl_gene_id: PFL_6156
symbol: PFL_6156
gene_biotype: protein_coding
description:
  HipA domain protein; Identified by match to protein family HMM PF07804; match to protein family HMM PF07805.


ensembl_gene_id: PFL_6157
symbol: oadA
gene_biotype: protein_coding
description:
  Oxaloacetate decarboxylase alpha subunit; Identified by match to protein family HMM PF00364; match to protein family HMM PF00682; match to protein family HMM PF02436; match to protein family HMM TIGR01108.


ensembl_gene_id: PFL_6158
symbol: accC_1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; Identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514.


ensembl_gene_id: PFL_6166
symbol: PFL_6166
gene_biotype: protein_coding
description:
  Transporter, CPA2 family; Identified by similarity to SP:P39830; match to protein family HMM PF00999.


ensembl_gene_id: PFL_6168
symbol: PFL_6168
gene_biotype: protein_coding
description:
  Putrescine:hydrogen symporter, PuuP family; Identified by similarity to SP:P76037; match to protein family HMM PF00324.


ensembl_gene_id: PFL_6169
symbol: pdxY
gene_biotype: protein_coding
description:
  Pyridoxal kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.


ensembl_gene_id: PFL_6174
symbol: dksA-2
gene_biotype: protein_coding
description:
  Putative RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.


ensembl_gene_id: PFL_6176
symbol: amiC
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q46929; match to protein family HMM PF01520.


ensembl_gene_id: PFL_6178
symbol: mntA
gene_biotype: protein_coding
description:
  manganese(II)/zinc(II) ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: PFL_6179
symbol: mntB
gene_biotype: protein_coding
description:
  manganese(II)/zinc(II) ABC transporter, permease protein; Identified by match to protein family HMM PF00950.


ensembl_gene_id: PFL_6180
symbol: mntC
gene_biotype: protein_coding
description:
  manganese(II)/zinc(II) ABC transporter, periplasmic manganese(II)/zinc(II)-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: PFL_6181
symbol: hisI2
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase 2; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: PFL_6182
symbol: PFL_6182
gene_biotype: protein_coding
description:
  Putative carbonate dehydratase; Identified by similarity to SP:P40881; match to protein family HMM PF00132.


ensembl_gene_id: PFL_6183
symbol: PFL_6183
gene_biotype: protein_coding
description:
  Putative dihydroorotase; Identified by similarity to SP:P46538; match to protein family HMM PF01979.


ensembl_gene_id: PFL_6186
symbol: clsA
gene_biotype: protein_coding
description:
  Phospholipase D domain protein; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: PFL_6191
symbol: cadA_2
gene_biotype: protein_coding
description:
  Cadmium-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.


ensembl_gene_id: PFL_6197
symbol: PFL_6197
gene_biotype: protein_coding
description:
  Dual specificity phosphatase, catalytic domain protein; Identified by match to protein family HMM PF00782; match to protein family HMM PF01569.


ensembl_gene_id: PFL_6205
symbol: PFL_6205
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01243.


ensembl_gene_id: PFL_6212
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine-fructose-6-phosphate transaminase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: PFL_6213
symbol: glmR
gene_biotype: protein_coding
description:
  Transcriptional regulator GlmR; See Ramos-Aires et al 2004 (PMID: 14982774) for more information; identified by similarity to GB:AAG08935.1; match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279.


ensembl_gene_id: PFL_6214
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the trans [...]


ensembl_gene_id: PFL_6215
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: PFL_6216
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: PFL_6217
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: PFL_6218
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: PFL_6219
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: PFL_6220
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: PFL_6221
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: PFL_6222
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: PFL_6223
symbol: parB
gene_biotype: protein_coding
description:
  Chromosome partitioning protein ParB; Identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.


ensembl_gene_id: PFL_6224
symbol: parA
gene_biotype: protein_coding
description:
  Chromosome partitioning protein ParA; Identified by similarity to SP:O05189; match to protein family HMM PF01656.


ensembl_gene_id: PFL_6225
symbol: gidB
gene_biotype: protein_coding
description:
  16S rRNA (guanine(527)-N(7))-methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: PFL_6226
symbol: gidA
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: PFL_6229
symbol: trmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: PFL_6230
symbol: yidC/oxaA
gene_biotype: protein_coding
description:
  Inner-membrane protein insertion factor YidC/OxaA; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: PFL_6231
symbol: rpmH
gene_biotype: protein_coding
description:
  Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: PFL_6232
symbol: PFL_6232
gene_biotype: protein_coding
description:
  Conjugative transfer region protein, TIGR03750 family; Identified by match to protein family HMM TIGR03750.


ensembl_gene_id: PFL_6233
symbol: PFL_6233
gene_biotype: protein_coding
description:
  Conjugative transfer region lipoprotein, TIGR03751 family; Identified by match to protein family HMM TIGR03751.


ensembl_gene_id: PFL_6236
symbol: PFL_6236
gene_biotype: protein_coding
description:
  Addiction module toxin, RelE/StbE family; Identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385.


ensembl_gene_id: PFL_6241
symbol: hmgR
gene_biotype: protein_coding
description:
  Hmg transcriptional repressor; Identified by similarity to GB:AAO12526.1; match to protein family HMM PF01614; match to protein family HMM PF09339.


ensembl_gene_id: PFL_6257
symbol: pilP_2
gene_biotype: protein_coding
description:
  Type IV pilus biogenesis protein PilP; Identified by similarity to GB:ABR13429.1; match to protein family HMM TIGR03021.


ensembl_gene_id: PFL_6261
symbol: PFL_6261
gene_biotype: protein_coding
description:
  Plasmid stabilization system protein, RelE/ParE family; Identified by match to protein family HMM PF05016.


ensembl_gene_id: PFL_6284
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


