# geneInfo

ensembl_gene_id: BP1340
symbol: BP1340
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa2156 TR:Q9I1V9 (EMBL:AE004642) (245 aa) fasta scores: E(): 2.2e-62, 63.93% id in 244 aa, and to Escherichia coli hypothetical protein YbhP or B0790 or Z1009 or Ecs0868 SW:YBHP_ECOLI (P75772) (253 aa) fasta scores: E(): 2.8e-53, 53.72% id in 255 aa. Also similar to BP0710, 37.801% identity (46.610% ungapped) in 291 aa overlap.


ensembl_gene_id: BP1344
symbol: mxcB
gene_biotype: protein_coding
description:
  Iron utilization protein (Pseudogene); ~27 bp deletion in pertussis; ~27 bp insertion in parapertussis and bronchiseptica.


ensembl_gene_id: BP1345
symbol: BP1345
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Mycobacterium tuberculosis hypothetical 123.1 kDa protein Rv1251c or Mtv006.23C TR:O50466 (EMBL:AL021006) (1139 aa) fasta scores: E(): 3e-51, 37.83% id in 1171 aa, and to Mycobacterium leprae hypothetical protein Ml1098 TR:Q9CC95 (EMBL:AL583920) (1152 aa) fasta scores: E(): 2.9e-45, 36.9% id in 1176 aa.


ensembl_gene_id: BP1346
symbol: BP1346
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa2417 TR:Q9I164 (EMBL:AE004669) (312 aa) fasta scores: E(): 4.1e-55, 52.72% id in 294 aa, and to Rhizobium meliloti putative transcription regulator protein Smc01570 TR:CAC46900 (EMBL:AL591790) (296 aa) fasta scores: E(): 6.3e-42, 41.69% id in 295 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1347
symbol: BP1347
gene_biotype: protein_coding
description:
  Putative reductase; Similar to Rhizobium loti Mll5191 protein Mll5191 TR:Q98CD9 (EMBL:AP003005) (203 aa) fasta scores: E(): 4.2e-35, 52.17% id in 184 aa, and to Streptomyces coelicolor putative reductase Scah10.16 TR:Q9RKU1 (EMBL:AL132824) (185 aa) fasta scores: E(): 1.8e-21, 40.32% id in 186 aa.


ensembl_gene_id: BP1348
symbol: citE
gene_biotype: protein_coding
description:
  Similar to Leuconostoc mesenteroides citrate lyase beta chain CitE SW:CILB_LEUMC (O53078) (302 aa) fasta scores: E(): 1.8e-26, 35.06% id in 288 aa, and to Caulobacter crescentus citrate lyase beta subunit, putative Cc3659 TR:Q9A2A7 (EMBL:AE006024) (295 aa) fasta scores: E(): 1.3e-42, 47.22% id in 288 aa; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: BP1349
symbol: BP1349
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative transcriptional regulator, GntR family protein Smb20773 TR:CAC49865 (EMBL:AL603647) (228 aa) fasta scores: E(): 4.7e-14, 35.29% id in 204 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa0797 TR:Q9I5E1 (EMBL:AE004515) (240 aa) fasta scores: E(): 1.8e-13, 31.28% id in 211 aa.


ensembl_gene_id: BP1350
symbol: BP1350
gene_biotype: protein_coding
description:
  Similar to Giardia lamblia acetyl-CoA synthetase TR:Q9Y1N2 (EMBL:AF107206) (726 aa) fasta scores: E(): 8.7e-33, 27.75% id in 735 aa, and to Archaeoglobus fulgidus conserved hypothetical protein Af1211 TR:O29057 (EMBL:AE001020) (685 aa) fasta scores: E(): 1.6e-41, 31.98% id in 691 aa.


ensembl_gene_id: BP1352
symbol: BP1352
gene_biotype: protein_coding
description:
  Putative exported protein (pseudogene); Signal peptide predicted for BP1351 by SignalP 2.0 HMM (Signal peptide probabilty 0.998) with cleavage site probability 0.996 between residues 17 and 18.


ensembl_gene_id: BP1353
symbol: BP1353
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium meliloti putative conserved membrane-anchored protein Smb21182 TR:CAC49248 (EMBL:AL603645) (394 aa) fasta scores: E(): 8.4e-39, 37.01% id in 389 aa, and to Streptomyces coelicolor putative racemase Scf41.21 TR:Q9RJU8 (EMBL:AL117387) (403 aa) fasta scores: E(): 3.5e-37, 38.06% id in 402 aa; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP1354
symbol: BP1354
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas putida hypothetical 34.5 kDa protein in clcB-clcD intergenic region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 6.3e-30, 33.11% id in 308 aa, and to Alcaligenes eutrophus hypothetical 35.7 kDa protein MacB TR:Q9RBG2 (EMBL:AF130250) (340 aa) fasta scores: E(): 1.8e-29, 34.61% id in 312 aa.


ensembl_gene_id: BP1355
symbol: BP1355
gene_biotype: protein_coding
description:
  Probable LacI-family transcriptional regulator; Similar to Escherichia coli transcriptional repressor CytR or B3934 or Z5481 or Ecs4861 SW:CYTR_ECOLI (P06964) (341 aa) fasta scores: E(): 8.7e-25, 30% id in 350 aa, and to Streptomyces coelicolor probable LacI-family transcriptional regulator Scc57a.16 TR:Q9RDI2 (EMBL:AL136519) (347 aa) fasta scores: E(): 4e-27, 30.03% id in 323 aa.


ensembl_gene_id: BP1356
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: BP1358
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit (Pseudogene); GGGC in pertussis; GGGC(GGGCCGTCCGCTGGCGGGC) in parapertussis and bronchiseptica.


ensembl_gene_id: BP1359
symbol: BP1359
gene_biotype: protein_coding
description:
  Putative mandelate racemase; Similar to Pseudomonas aeruginosa hypothetical protein Pa4041 TR:Q9HWY6 (EMBL:AE004821) (389 aa) fasta scores: E(): 1.7e-54, 43.97% id in 382 aa, and to Sulfolobus tokodaii 373aa long hypothetical mandelate racemase St1108 TR:BAB66141 (EMBL:AP000985) (373 aa) fasta scores: E(): 1.9e-13, 28.92% id in 325 aa; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: BP1360
symbol: BP1360
gene_biotype: protein_coding
description:
  Putative ketopantoate reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: BP1362
symbol: BP1362
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative amino-acid ABC transporter ATP-binding protein Smc03894 TR:CAC47856 (EMBL:AL591793) (253 aa) fasta scores: E(): 1.3e-55, 69.91% id in 246 aa, and to Clostridium acetobutylicum amino acid ABC-type transporter, ATPase component Cac3327 TR:Q97DZ3 (EMBL:AE007829) (247 aa) fasta scores: E(): 1.3e-39, 49.59% id in 246 aa. Similar to several B. pertussis CDSs: BP1181, P3828, BP1534, BP1855, BP1575, BP0054, P0768, and BP1510.


ensembl_gene_id: BP1363
symbol: BP1363
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative amino-acid transport system permease ABC transporter protein Smc03893 TR:CAC47855 (EMBL:AL591793) (226 aa) fasta scores: E(): 1.2e-57, 71.3% id in 223 aa, and to Clostridium acetobutylicum amino acid ABC-type transporter, permease component Cac3326 TR:Q97DZ4 (EMBL:AE007829) (227 aa) fasta scores: E(): 3.2e-47, 64.95% id in 214 aa.


ensembl_gene_id: BP1364
symbol: BP1364
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti amino acid ABC transporter, periplasmic amino acid-binding protein Mll3861 TR:Q98FA8 (EMBL:AP003002) (267 aa) fasta scores: E(): 1.8e-58, 65.88% id in 255 aa, and to Clostridium acetobutylicum periplasmic amino acid binding protein cac3325 TR:Q97DZ5 (EMBL:AE007829) (269 aa) fasta scores: E(): 1.5e-47, 57.85% id in 242 aa; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: BP1366
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: BP1370
symbol: flhF
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhF (Pseudogene); (GC)4 in pertussis; (GC)5 in parapertussis and bronchiseptica.


ensembl_gene_id: BP1371
symbol: flgM
gene_biotype: protein_coding
description:
  Similar to Escherichia coli negative regulator of flagellin synthesis FlgM or B1071 SW:FLGM_ECOLI (P43532) (97 aa) fasta scores: E(): 0.0023, 37.36% id in 91 aa, and to Salmonella typhimurium negative regulator of flagellin synthesis FlgM or FlgR or MviS SW:FLGM_SALTY (P26477) (97 aa) fasta scores: E(): 0.00074, 36.55% id in 93 aa.


ensembl_gene_id: BP1372
symbol: flgA
gene_biotype: protein_coding
description:
  Flagella basal body P-ring formation protein; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.


ensembl_gene_id: BP1373
symbol: flgB
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: BP1374
symbol: flgC
gene_biotype: protein_coding
description:
  Similar to Salmonella typhimurium flagellar basal-body rod protein FlgC or FlaW or Fla FIII SW:FLGC_SALTY (P16438) (134 aa) fasta scores: E(): 3.4e-31, 67.39% id in 138 aa, and to Yersinia enterocolitica flagellar basal-body rod protein FlgC SW:FLGC_YEREN (Q56894) (134 aa) fasta scores: E(): 4.1e-32, 72.46% id in 138 aa.


ensembl_gene_id: BP1375
symbol: flgD
gene_biotype: protein_coding
description:
  Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: BP1376
symbol: flgE
gene_biotype: protein_coding
description:
  Similar to Salmonella typhimurium flagellar hook protein FlgE or FlaK or Fla FV SW:FLGE_SALTY (P16322) (402 aa) fasta scores: E(): 4e-24, 40.08% id in 479 aa, and to Escherichia coli flagellar hook protein FlgE or FlaK or Fla FV or B1076 SW:FLGE_ECOLI (P75937) (401 aa) fasta scores: E(): 1.8e-25, 40.08% id in 479 aa.


ensembl_gene_id: BP1377
symbol: flgF
gene_biotype: protein_coding
description:
  Similar to Salmonella typhimurium flagellar basal-body rod protein FlgF or FlaX or Fla FVI SW:FLGF_SALTY (P16323) (251 aa) fasta scores: E(): 3.1e-34, 48.01% id in 252 aa, and to Escherichia coli flagellar basal-body rod protein FlgF or FlaX or Fla FVI or B1077 SW:FLGF_ECOLI (P75938) (251 aa) fasta scores: E(): 6.6e-34, 48.01% id in 252 aa.


ensembl_gene_id: BP1378
symbol: flgG
gene_biotype: protein_coding
description:
  Similar to Salmonella typhimurium flagellar basal-body rod protein FlgG or FlaL or Fla FVII SW:FLGG_SALTY (P16439) (260 aa) fasta scores: E(): 3.2e-60, 67.05% id in 261 aa, and to Escherichia coli, and flagellar basal-body rod protein FlgG or FlaL or Fla FVII or B1078 or Z1716 or Ecs1456 SW:FLGG_ECOLI (P75939) (260 aa) fasta scores: E(): 7.2e-60, 66.66% id in 261 aa.


ensembl_gene_id: BP1379
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: BP1380
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: BP1381
symbol: flgJ
gene_biotype: protein_coding
description:
  Peptidoglycan hydrolase; Similar to Salmonella typhimurium peptidoglycan hydrolase FlgJ or FlaZ or Fla FX SW:FLGJ_SALTY (P15931) (316 aa) fasta scores: E(): 3.9e-22, 42.58% id in 317 aa, and to Escherichia coli peptidoglycan hydrolase FlgJ or FlaZ or Fla FX or B1081 SW:FLGJ_ECOLI (P75942) (313 aa) fasta scores: E(): 3.9e-22, 40.56% id in 318 aa.


ensembl_gene_id: BP1382
symbol: flgK
gene_biotype: protein_coding
description:
  Similar to Salmonella typhimurium flagellar hook-associated protein 1 FlgK or FlaS or FlaW SW:FLGK_SALTY (P15932) (552 aa) fasta scores: E(): 1.2e-68, 40.32% id in 558 aa, and to Escherichia coli flagellar hook-associated protein 1 FlgK or FlaS or FlaW or B1082 SW:FLGK_ECOLI (P33235) (546 aa) fasta scores: E(): 3.5e-70, 40.1% id in 551 aa.


ensembl_gene_id: BP1383
symbol: flgL
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 3; Similar, over the N-terminal region, to Salmonella typhimurium flagellar hook-associated protein 3 FlgL or FlaT or FlaU SW:FLGL_SALTY (P16326) (317 aa) fasta scores: E(): 1.9e-21, 42.78% id in 194 aa, and to Pseudomonas aeruginosa flagellar hook-associated protein type 3 FlgL TR:Q9AGJ3 (EMBL:AF332547) (433 aa) fasta scores: E(): 2.4e-17, 28.29% id in 509 aa.


ensembl_gene_id: BP1384
symbol: tsr-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or Ched or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 1.4e-54, 46.18% id in 550 aa, and to Escherichia coli methyl-accepting chemotaxis protein II Tar or Chem or B1886 SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 1.3e-53, 45.24% id in 557 aa.


ensembl_gene_id: BP1385
symbol: tar
gene_biotype: protein_coding
description:
  Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or B1886 SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 1.8e-64, 45.36% id in 529 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 1.1e-62, 45.59% id in 522 aa.


ensembl_gene_id: BP1389
symbol: fliR
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: BP1390
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: BP1391
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: BP1392
symbol: fliO
gene_biotype: protein_coding
description:
  Flagellar protein FliO; Similar to Escherichia coli flagellar protein FliO or FlbD or FlaP or B1947 SW:FLIO_ECOLI (P22586) (121 aa) fasta scores: E(): 2.8e-06, 36.36% id in 110 aa, and to Salmonella typhimurium flagellar protein FliO or FlbD or FlaP SW:FLIO_SALTY (P54699) (124 aa) fasta scores: E(): 2.1e-07, 37.61% id in 109 aa.


ensembl_gene_id: BP1393
symbol: fliN
gene_biotype: protein_coding
description:
  Similar to Escherichia coli flagellar motor switch protein FliN or MotD or FlaN or B1946 SW:FLIN_ECOLI (P15070) (137 aa) fasta scores: E(): 1.3e-23, 61.53% id in 130 aa, and to Salmonella typhimurium flagellar motor switch protein FliN or MotD or FlaNf SW:FLIN_SALTY (P26419) (137 aa) fasta scores: E(): 3.7e-24, 63.84% id in 130 aa.


ensembl_gene_id: BP1394
symbol: fliM
gene_biotype: protein_coding
description:
  Similar to Escherichia coli flagellar motor switch protein FliM or Fla AII or Fla QII or CheC2 or B1945 SW:FLIM_ECOLI (P06974) (334 aa) fasta scores: E(): 3.6e-66, 52.32% id in 323 aa, and to Salmonella typhimurium flagellar motor switch protein FliM or Fla AII or Fla QII or CheC2 SW:FLIM_SALTY (P26418) (334 aa) fasta scores: E(): 1.6e-67, 52.96% id in 321 aa.


ensembl_gene_id: BP1395
symbol: fliL
gene_biotype: protein_coding
description:
  Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: BP1397
symbol: fliK
gene_biotype: protein_coding
description:
  Flagellar hook-length control protein (Pseudogene); ScanRegExp hit to PS00430, TonB-dependent receptor proteins signature 1.


ensembl_gene_id: BP1399
symbol: fliJ
gene_biotype: protein_coding
description:
  Flagellar protein FliJ; Similar to Escherichia coli flagellar protein FliJ or FlaO or FlaS or B1942 SW:FLIJ_ECOLI (P52613) (147 aa) fasta scores: E(): 5.2e-10, 33.1% id in 145 aa, and to Salmonella typhimurium flagellar protein FliJ or FlaO or FlaS SW:FLIJ_SALTY (P26463) (147 aa) fasta scores: E(): 6e-10, 33.79% id in 145 aa.


ensembl_gene_id: BP1400
symbol: fliI
gene_biotype: protein_coding
description:
  Similar to Escherichia coli flagellum-specific ATP synthase FliI or Fla AIII or FlaC or B1941 SW:FLII_ECOLI (P52612) (457 aa) fasta scores: E(): 4.1e-87, 64.95% id in 468 aa, and to Salmonella typhimurium flagellum-specific ATP synthase FliI or Fla AIII or FlaC SW:FLII_SALTY (P26465) (456 aa) fasta scores: E(): 4.1e-87, 65.58% id in 462 aa.


ensembl_gene_id: BP1401
symbol: fliH
gene_biotype: protein_coding
description:
  Similar to Escherichia coli flagellar assembly protein FliH or Fla BIII or Fla AII.3 or B1940 SW:FLIH_ECOLI (P31068) (228 aa) fasta scores: E(): 4.8e-14, 29.77% id in 225 aa, and to Salmonella typhimurium flagellar assembly protein FliH or Fla BIII or Fla AII.3 SW:FLIH_SALTY (P15934) (235 aa) fasta scores: E(): 7.2e-15, 31.85% id in 226 aa.


ensembl_gene_id: BP1402
symbol: fliG
gene_biotype: protein_coding
description:
  Similar to Escherichia coli flagellar motor switch protein FliG or Fla BII or Fla AII.2 or b1939 or z3029 or ecs2678 SW:FLIG_ECOLI (P31067) (331 aa) fasta scores: E(): 1.7e-70, 61.39% id in 329 aa, and to Salmonella typhimurium flagellar motor switch protein FliG or Fla BII or Fla AII.2 SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 6.3e-70, 60.48% id in 329 aa.


ensembl_gene_id: BP1403
symbol: fliF
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: BP1404
symbol: fliE
gene_biotype: protein_coding
description:
  Similar to Escherichia coli flagellar hook-basal body complex protein FliE or FlaN or Fla AI or B1937 or Z3027 or Ecs2676 SW:FLIE_ECOLI (P25797) (103 aa) fasta scores: E(): 3e-12, 47.22% id in 108 aa, and to Salmonella typhimurium flagellar hook-basal body complex protein FliE or FlaN or Fla AI SW:FLIE_SALTY (P26462) (103 aa) fasta scores: E(): 1.9e-11, 45.79% id in 107 aa.


ensembl_gene_id: BP1406
symbol: BP1406
gene_biotype: protein_coding
description:
  Putative flagellar protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa1473 TR:Q9I3N9 (EMBL:AE004576) (111 aa) fasta scores: E(): 2e-07, 43.18% id in 88 aa, and to Bacillus subtilis YlqH protein TR:O34867 (EMBL:AJ000975) (93 aa) fasta scores: E(): 2.7e-07, 42.68% id in 82 aa.


ensembl_gene_id: BP1409
symbol: fliS
gene_biotype: protein_coding
description:
  Flagellar protein FliS; Similar to Salmonella typhimurium flagellar protein FliS SW:FLIS_SALTY (P26609) (135 aa) fasta scores: E(): 4.5e-19, 47.86% id in 117 aa, and to Escherichia coli flagellar protein FliS or B1925 SW:FLIS_ECOLI (P26608) (136 aa) fasta scores: E(): 1.8e-11, 33.33% id in 123 aa.


ensembl_gene_id: BP1410
symbol: fliD
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: BP1411
symbol: flaG
gene_biotype: protein_coding
description:
  Putative flagellar protein; Similar to Pseudomonas aeruginosa FlaG TR:O33420 (EMBL:L81176) (128 aa) fasta scores: E(): 0.033, 31.35% id in 118 aa, and to Riftia pachyptila endosymbiont FlaG TR:Q9ZFD5 (EMBL:AF105060) (115 aa) fasta scores: E(): 0.049, 28.42% id in 95 aa.


ensembl_gene_id: BP1412
symbol: folC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli FolC bifunctional protein [includes: folylpolyglutamate synthase and dihydrofolate synthase] FolC or DedC or B2315 SW:FOLC_ECOLI (P08192) (422 aa) fasta scores: E(): 4.1e-62, 48% id in 427 aa, and to Neisseria gonorrhoeae FolC bifunctional protein [includes: folylpolyglutamate synthase and dihydrofolate synthase] FolC TR:Q50990 (EMBL:Z68205) (424 aa) fasta scores: E(): 1.8e-72, 49.18% id in 429 aa.


ensembl_gene_id: BP1413
symbol: BP1413
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa5052 TR:Q9HUC7 (EMBL:AE004918) (231 aa) fasta scores: E(): 0.00036, 35.71% id in 168 aa.


ensembl_gene_id: BP1414
symbol: cvpA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli colicin V production protein CvpA or DedE or B2313 SW:CVPA_ECOLI (P08550) (162 aa) fasta scores: E(): 1.5e-10, 32.7% id in 159 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3109 TR:Q9HZB0 (EMBL:AE004735) (180 aa) fasta scores: E(): 1.1e-13, 36.25% id in 160 aa.


ensembl_gene_id: BP1415
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: BP1416
symbol: dsbB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli disulfide bond formation protein B DsbB or RoxB or B1185 or Z1948 or Ecs1680 SW:DSBB_ECOLI (P30018) (176 aa) fasta scores: E(): 3.1e-05, 28.47% id in 144 aa, and to Pseudomonas aeruginosa disulfide bond formation protein B 1 DsbB1 or Pa5256 SW:DSB1_PSEAE (P21482) (163 aa) fasta scores: E(): 8.3e-08, 30.57% id in 157 aa.


ensembl_gene_id: BP1417
symbol: glnD
gene_biotype: protein_coding
description:
  Putative multiple antibiotic resistance protein (Pseudogene); Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and  [...]


ensembl_gene_id: BP1418
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: BP1419
symbol: rpsB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 30S ribosomal protein S2 RpsB or B0169 or Z0180 or Ecs0171 SW:RS2_ECOLI (P02351) (240 aa) fasta scores: E(): 5.1e-52, 61.3% id in 230 aa, and to Spirulina platensis 30S ribosomal protein S2 RpsB SW:RS2_SPIPL (P34831) (251 aa) fasta scores: E(): 2.9e-57, 62.14% id in 243 aa; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: BP1420
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: BP1422
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: BP1423
symbol: uppS
gene_biotype: protein_coding
description:
  Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: BP1424
symbol: cdsA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphatidate cytidylyltransferase CdsA or Cds or B0175 or Z0186 or Ecs0177 SW:CDSA_ECOLI (P06466) (249 aa) fasta scores: E(): 1.1e-15, 33.72% id in 255 aa, and to Haemophilus influenzae phosphatidate cytidylyltransferase CdsA or Cds or Hi0919 SW:CDSA_HAEIN (P44937) (288 aa) fasta scores: E(): 1.4e-19, 32.51% id in 286 aa; Belongs to the CDS family.


ensembl_gene_id: BP1425
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: BP1426
symbol: BP1426
gene_biotype: protein_coding
description:
  Similar to Escherichia coli inner membrane protein EcfE TR:AAL01378 (EMBL:AF407012) (450 aa) fasta scores: E(): 4e-55, 40.17% id in 448 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3649 TR:Q9HXY3 (EMBL:AE004785) (450 aa) fasta scores: E(): 7.8e-55, 43.45% id in 451 aa.


ensembl_gene_id: BP1427
symbol: bamA
gene_biotype: protein_coding
description:
  Probable surface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: BP1428
symbol: BP1428
gene_biotype: protein_coding
description:
  Similar to Salmonella typhimurium outer membrane protein OmpH precursor OmpH SW:OMPH_SALTY (P16974) (161 aa) fasta scores: E(): 3.6e-06, 28.84% id in 156 aa, and to Neisseria meningitidis putative outer membrane protein Nma0086 TR:Q9JX30 (EMBL:AL162752) (166 aa) fasta scores: E(): 8.9e-13, 39.63% id in 164 aa; Belongs to the skp family.


ensembl_gene_id: BP1429
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: BP1430
symbol: fabZ
gene_biotype: protein_coding
description:
  (3R)-hydroxymyristol-[acyl carrier protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: BP1431
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: BP1432
symbol: lpxB
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: BP1433
symbol: rnhB
gene_biotype: protein_coding
description:
  Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.


ensembl_gene_id: BP1434
symbol: BP1434
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis putative RNA methyltransferase Nma1351 TR:Q9JUE8 (EMBL:AL162755) (261 aa) fasta scores: E(): 7.7e-33, 42.91% id in 261 aa, and to Synechocystis sp hypothetical tRNA/rRNA methyltransferase Slr1673 SW:YG73_SYNY3 (P74261) (274 aa) fasta scores: E(): 5.4e-18, 32.95% id in 264 aa.


ensembl_gene_id: BP1435
symbol: BP1435
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: BP1436
symbol: ppsA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: BP1437
symbol: BP1437
gene_biotype: protein_coding
description:
  Probable class-I glutamine amidotransferase; Similar to Xylella fastidiosa GMP synthase xf0560 TR:Q9PFU7 (EMBL:AE003903) (240 aa) fasta scores: E(): 7.8e-30, 46.15% id in 234 aa, and to Caulobacter crescentus glutamine amidotransferase, class-i family protein cc0409 TR:Q9AB25 (EMBL:AE005713) (238 aa) fasta scores: E(): 1.3e-14, 33.88% id in 242 aa.


ensembl_gene_id: BP1438
symbol: BP1438
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis putative membrane protein Nma1383 TR:Q9JUC5 (EMBL:AL162755) (135 aa) fasta scores: E(): 4e-06, 29.92% id in 137 aa, and to Mycobacterium tuberculosis hypothetical 15.2 kDa protein Cy277.08 precursor Rv1487 or Mtcy277.08 TR:P71767 (EMBL:Z79701) (144 aa) fasta scores: E(): 0.012, 30.07% id in 143 aa.


ensembl_gene_id: BP1440
symbol: BP1440
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rickettsia conorii hypothetical 34.0 kDa protein Rc0452 TR:AAL02990 (EMBL:AE008609) (312 aa) fasta scores: E(): 2.1e-55, 53.33% id in 300 aa, and to Neisseria meningitidis membrane protein Gna1220 TR:Q9JPN3 (EMBL:AF226519) (315 aa) fasta scores: E(): 3.4e-53, 64.83% id in 310 aa.


ensembl_gene_id: BP1441
symbol: BP1441
gene_biotype: protein_coding
description:
  Probable membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein Smc01464 TR:CAC46726 (EMBL:AL591789) (426 aa) fasta scores: E(): 4.8e-25, 33.42% id in 377 aa, and to Rhizobium loti Mll4270 protein TR:Q98EF3 (EMBL:AP003003) (403 aa) fasta scores: E(): 1.3e-19, 29.72% id in 397 aa.


ensembl_gene_id: BP1442
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: BP1443
symbol: BP1443
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae hypothetical protein Vc0849 SW:Y849_VIBCH (P52122) (144 aa) fasta scores: E(): 2.9e-24, 46.52% id in 144 aa, and to Escherichia coli hypothetical protein YfjG or B2619 SW:YFJG_ECOLI (P52121) (158 aa) fasta scores: E(): 1.1e-23, 42.25% id in 142 aa.


ensembl_gene_id: BP1444
symbol: BP1444
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli protein YfjF or B2618 SW:YFJF_ECOLI (P52119) (96 aa) fasta scores: E(): 9.8e-07, 43.52% id in 85 aa, and to Neisseria meningitidis hypothetical protein nma1005 or nmb0796 SW:YA05_NEIMA (Q9JRC2) (92 aa) fasta scores: E(): 6.1e-07, 36.78% id in 87 aa; Belongs to the UPF0125 (RnfH) family.


ensembl_gene_id: BP1445
symbol: BP1445
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa0746 TR:Q9I5I3 (EMBL:AE004509) (387 aa) fasta scores: E(): 2.8e-92, 62.36% id in 380 aa, and to Caulobacter crescentus acyl-CoA dehydrogenase Cc1350 TR:Q9A8K3 (EMBL:AE005810) (379 aa) fasta scores: E(): 5.4e-85, 56.99% id in 379 aa.


ensembl_gene_id: BP1446
symbol: BP1446
gene_biotype: protein_coding
description:
  enoly-CoA hydratase; Similar to Pseudomonas putida enoyl-coenzyme A hydratase TR:Q51969 (EMBL:U24215) (355 aa) fasta scores: E(): 1.9e-29, 38.66% id in 375 aa, and to Pseudomonas aeruginosa probable enoyl-CoA hydratase/isomerase Pa0744 TR:Q9I5I5 (EMBL:AE004509) (367 aa) fasta scores: E(): 1.5e-41, 46.47% id in 383 aa.


ensembl_gene_id: BP1447
symbol: mmsB
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa 3-hydroxyisobutyrate dehydrogenase MmsB or Pa3569 SW:MMSB_PSEAE (P28811) (298 aa) fasta scores: E(): 4.2e-66, 67% id in 294 aa, and to Rhizobium loti 3-hydroxyisobutyrate dehydrogenase Mlr1203 TR:Q98L30 (EMBL:AP002996) (294 aa) fasta scores: E(): 3.1e-44, 50.69% id in 290 aa; Belongs to the HIBADH-related family.


ensembl_gene_id: BP1448
symbol: BP1448
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr6946 protein TR:Q987R7 (EMBL:AP003010) (171 aa) fasta scores: E(): 5.5e-18, 48.85% id in 131 aa, and to Agrobacterium tumefaciens Agr_c_483p TR:AAK86098 (EMBL:AE007967) (149 aa) fasta scores: E(): 7.3e-14, 39.09% id in 133 aa.


ensembl_gene_id: BP1449
symbol: BP1449
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Caulobacter crescentus nodulin-related protein Cc0717 TR:Q9AA89 (EMBL:AE005747) (233 aa) fasta scores: E(): 8.4e-38, 60.71% id in 224 aa, and to Rhizobium loti Mlr6622 protein TR:Q988S0 (EMBL:AP003009) (231 aa) fasta scores: E(): 3.8e-37, 60.26% id in 224 aa.


ensembl_gene_id: BP1451
symbol: talB
gene_biotype: protein_coding
description:
  Transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.


ensembl_gene_id: BP1452
symbol: carA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli carbamoyl-phosphate synthase small chain CarA or PyrA or B0032 or Z0037 or Ecs0035 SW:CARA_ECOLI (P00907) (382 aa) fasta scores: E(): 6.1e-94, 65.02% id in 366 aa, and to Pseudomonas aeruginosa carbamoyl-phosphate synthase small chain CarA or Pa4758 SW:CARA_PSEAE (P38098) (378 aa) fasta scores: E(): 7.1e-100, 68.64% id in 370 aa; Belongs to the CarA family.


ensembl_gene_id: BP1453
symbol: carB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli carbamoyl-phosphate synthase large chain CarB or PyrA or B0033 SW:CARB_ECOLI (P00968) (1072 aa) fasta scores: E(): 0, 68.42% id in 1080 aa, and to Neisseria meningitidis carbamoyl phosphate synthase large subunit CarB or Nma0602 TR:Q9JW02 (EMBL:AL162753) (1071 aa) fasta scores: E(): 0, 72.42% id in 1077 aa; Belongs to the CarB family.


ensembl_gene_id: BP1455
symbol: gpmB
gene_biotype: protein_coding
description:
  Probable short chain dehydrogenase (Pseudogene); (CG)3 in pertussis; (CG)4 in parapertussis and bronchiseptica.


ensembl_gene_id: BP1456
symbol: BP1456
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to the previously sequenced Bordetella pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta scores: E(): 9.6e-14, 30.46% id in 302 aa, and to Neisseria meningitidis putative LysR-family transcriptional regulator Nma1437 or Nmb1049 TR:Q9JRJ3 (EMBL:AL162755) (304 aa) fasta scores: E(): 5e-19, 31.52% id in 295 aa.


ensembl_gene_id: BP1457
symbol: BP1457
gene_biotype: protein_coding
description:
  Probable ATP-binding component of ABC transporter; Similar to Escherichia coli putrescine transport ATP-binding protein PotG or B0855 SW:POTG_ECOLI (P31134) (377 aa) fasta scores: E(): 4.2e-46, 44.1% id in 331 aa, and to Rhizobium meliloti putative ATP-binding ABC transporter protein smc01608 TR:CAC46799 (EMBL:AL591790) (353 aa) fasta scores: E(): 1.2e-48, 45.74% id in 341 aa.


ensembl_gene_id: BP1458
symbol: BP1458
gene_biotype: protein_coding
description:
  Probable permease component of ABC transporter; Similar to Actinobacillus pleuropneumoniae ferric transport system permease protein AfuB SW:AFUB_ACTPL (Q44123) (687 aa) fasta scores: E(): 4.3e-38, 28% id in 550 aa, and to Agrobacterium tumefaciens Agr_l_586p agr_l_586 TR:AAK88866 (EMBL:AE008229) (561 aa) fasta scores: E(): 2.3e-50, 34.22% id in 564 aa.


ensembl_gene_id: BP1462
symbol: aroC
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: BP1463
symbol: BP1463
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4632 TR:Q9HVF9 (EMBL:AE004877) (273 aa) fasta scores: E(): 6.6e-50, 53% id in 266 aa, and to Vibrio cholerae hypothetical protein Vca0581 TR:Q9KM08 (EMBL:AE004389) (263 aa) fasta scores: E(): 5.6e-24, 36.53% id in 271 aa.


ensembl_gene_id: BP1464
symbol: mobB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli molybdopterin-guanine dinucleotide biosynthesis protein B MobB or B3856 SW:MOBB_ECOLI (P32125) (174 aa) fasta scores: E(): 1.4e-19, 42.51% id in 167 aa, and to Rhizobium loti molybdopterin-guanine dinucleotide biosynthesis protein B Mlr0548 TR:Q98MK1 (EMBL:AP002995) (167 aa) fasta scores: E(): 4.9e-29, 54.08% id in 159 aa.


ensembl_gene_id: BP1465
symbol: moeA
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: BP1466
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: BP1470
symbol: BP1470
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae iron-sulfur cluster-binding protein Vc1516 TR:Q9KRW8 (EMBL:AE004230) (553 aa) fasta scores: E(): 7.7e-19, 35.92% id in 451 aa.


ensembl_gene_id: BP1471
symbol: BP1471
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Vibrio cholerae chaperone, formate dehydrogenase-specific, putative Vc1515 TR:Q9KRW9 (EMBL:AE004230) (218 aa) fasta scores: E(): 1.1e-21, 43.54% id in 186 aa, and to Vibrio cholerae TorD protein Vc1720 TR:Q9KRC2 (EMBL:AE004250) (220 aa) fasta scores: E(): 0.0061, 25% id in 204 aa.


ensembl_gene_id: BP1472
symbol: fdhA
gene_biotype: protein_coding
description:
  Similar to Wolinella succinogenes formate dehydrogenase large subunit precursor FdhA TR:P28179 (EMBL:X54057) (939 aa) fasta scores: E(): 2.4e-89, 43.78% id in 973 aa, and to Campylobacter jejuni putative formate dehydrogenase large subunit FdhA or Cj1511 TR:Q9PMF2 (EMBL:AL139078) (934 aa) fasta scores: E(): 9.8e-103, 44.84% id in 961 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: BP1474
symbol: fdhB
gene_biotype: protein_coding
description:
  Formate dehydrogenase iron-sulfur subunit (Pseudogene); ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, iron-sulfur binding region signature. Confirmed by InterPro eMOTIF pattern match.


ensembl_gene_id: BP1475
symbol: fdhC
gene_biotype: protein_coding
description:
  Similar to Wolinella succinogenes formate dehydrogenase subunit C precursor FdhC TR:P28180 (EMBL:X54057) (306 aa) fasta scores: E(): 2.3e-08, 27.75% id in 245 aa, and to Vibrio cholerae formate dehydrogenase, cytochrome B556 subunit Vc1511 TR:Q9KRX2 (EMBL:AE004229) (357 aa) fasta scores: E(): 3e-34, 36.9% id in 336 aa.


ensembl_gene_id: BP1477
symbol: BP1477
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Alcaligenes eutrophus formate dehydrogenase FdsR TR:Q9RBF7 (EMBL:AJ007718) (299 aa) fasta scores: E(): 5.6e-30, 39.23% id in 288 aa, and to Bacillus subtilis YvgK protein YvgK TR:O32207 (EMBL:Z99121) (308 aa) fasta scores: E(): 7.8e-19, 30.47% id in 315 aa.


ensembl_gene_id: BP1479
symbol: BP1479
gene_biotype: protein_coding
description:
  Putative permease component of ABC transporter (Pseudogene); (TG)2 in pertussis; (TG)1 in parapertussis and bronchiseptica; Belongs to the ABC transporter superfamily.


ensembl_gene_id: BP1480
symbol: BP1480
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Eubacterium acidaminophilum extracellular tungstate binding protein precursor TupA TR:CAC40782 (EMBL:AJ291988) (286 aa) fasta scores: E(): 1e-40, 51.21% id in 248 aa, and to Vibrio cholerae hypothetical protein Vc1523 TR:Q9KRW1 (EMBL:AE004231) (275 aa) fasta scores: E(): 2.8e-42, 47.14% id in 263 aa.


ensembl_gene_id: BP1481
symbol: leuC-2
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: BP1483
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.


ensembl_gene_id: BP1484
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: BP1485
symbol: BP1485
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to The N-terminal region of Pseudomonas aeruginosa twitching motility protein FimV TR:O87015 (EMBL:U93274) (927 aa) fasta scores: E(): 4.1e-09, 28.87% id in 561 aa.


ensembl_gene_id: BP1486
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: BP1487
symbol: smoM
gene_biotype: protein_coding
description:
  Putative periplasmic solute-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: BP1488
symbol: BP1488
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein Smc04248 TR:CAC46497 (EMBL:AL591788) (191 aa) fasta scores: E(): 6.9e-34, 53.48% id in 172 aa, and to Rhizobium loti Mll5171 protein TR:Q98CF5 (EMBL:AP003005) (194 aa) fasta scores: E(): 3.9e-34, 50.78% id in 191 aa. Almost identical to BP0596, 99.522% identity in 209 aa overlap.


ensembl_gene_id: BP1489
symbol: BP1489
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein Smc04249 TR:CAC46498 (EMBL:AL591788) (597 aa) fasta scores: E(): 8.1e-127, 61.42% id in 560 aa, and to Rhizobium loti Mll5170 protein Mll5170 TR:Q98CF6 (EMBL:AP003005) (589 aa) fasta scores: E(): 2.5e-122, 61.38% id in 549 aa.


ensembl_gene_id: BP1490
symbol: trpF
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa N-(5'-phosphoribosyl)anthranilate isomerase TrpF or Pa3113 SW:TRPF_PSEAE (Q59649) (211 aa) fasta scores: E(): 1.2e-28, 49.52% id in 210 aa, and to Acinetobacter calcoaceticus N-(5'-phosphoribosyl)anthranilate isomerase TrpF SW:TRPF_ACICA (P16923) (213 aa) fasta scores: E(): 1.4e-26, 44.9% id in 216 aa; Belongs to the TrpF family.


ensembl_gene_id: BP1492
symbol: BP1492
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to the C-terminal regions of Salmonella typhimurium AdrA protein AdrA TR:Q9L401 (EMBL:AJ271071) (370 aa) fasta scores: E(): 8.8e-15, 34.71% id in 193 aa, and to Escherichia coli hypothetical protein YaiC or B0385 SW:YAIC_ECOLI (P21830) (371 aa) fasta scores: E(): 1e-14, 34.57% id in 188 aa.


ensembl_gene_id: BP1495
symbol: hemN
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. Similar to The C-terminal regions of Alcaligenes eutrophus oxygen-independent coproporphyrinogen III oxidase HemN SW:HEMN_ALCEU (O34162) (491 aa) fasta scores: E(): 8.1e-12, 47.27% id in 110 aa, and to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN or B3867 SW:HEMN_ECOLI (P32131) (457 aa) fasta scores: E(): 5.2e-06, 35.35% id in 99 aa.


ensembl_gene_id: BP1496
symbol: BP1496
gene_biotype: protein_coding
description:
  Probable two-component response regulator; Similar to Escherichia coli capsular synthesis regulator component B RcsB or B2217 or Z3476 or Ecs3106 SW:RCSB_ECOLI (P14374) (216 aa) fasta scores: E(): 1.7e-12, 30.73% id in 205 aa, and to Pseudomonas aeruginosa probable two-component response regulator Pa3714 TR:Q9HXS7 (EMBL:AE004790) (213 aa) fasta scores: E(): 6.9e-16, 32.38% id in 210 aa.


ensembl_gene_id: BP1497
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).


ensembl_gene_id: BP1498
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: BP1499
symbol: gshB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or B2947 SW:GSHB_ECOLI (P04425) (316 aa) fasta scores: E(): 8.5e-54, 46.77% id in 310 aa, and to Neisseria meningitidis glutathione synthetase GshB or Nma1747 TR:Q9JTJ6 (EMBL:AL162757) (318 aa) fasta scores: E(): 3.6e-64, 57.46% id in 315 aa.


ensembl_gene_id: BP1500
symbol: BP1500
gene_biotype: protein_coding
description:
  Putative IIa component of sugar transport PTS system; Similar to Vibrio furnissii PTS permease for mannose subunit IIIman N terminal domain ManW TR:P96165 (EMBL:U65015) (146 aa) fasta scores: E(): 0.00043, 33.33% id in 138 aa, and to Neisseria meningitidis sugar transport PTS system IIa component nma0390 TR:Q9JWF9 (EMBL:AL162753) (145 aa) fasta scores: E(): 9.9e-08, 29.85% id in 134 aa.


ensembl_gene_id: BP1501
symbol: ptsH
gene_biotype: protein_coding
description:
  Phosphocarrier protein HPr; Similar to Alcaligenes eutrophus phosphocarrier protein HPr PhbH SW:PTHP_ALCEU (P23537) (89 aa) fasta scores: E(): 1.6e-15, 57.3% id in 89 aa, and to Neisseria meningitidis phosphocarrier protein HPr PtsH or Nma0391 or Nmb2045 SW:PTHP_NEIMA (Q9JQN1) (89 aa) fasta scores: E(): 3e-13, 49.43% id in 89 aa.


ensembl_gene_id: BP1502
symbol: ptsI
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: BP1503
symbol: BP1503
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Homo sapiens proline rich peptide P-B precursor PbII TR:Q9UBN0 (EMBL:D29833) (79 aa) fasta scores: E(): 6.7, 38.59% id in 57 aa.


ensembl_gene_id: BP1505
symbol: osmC
gene_biotype: protein_coding
description:
  Osmotically inducible protein C (Pseudogene); (G)4 in pertussis; (G)2 in parapertussis and bronchiseptica.


ensembl_gene_id: BP1506
symbol: BP1506
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, periplasmic amino acid- binding protein Dra0263 TR:Q9RYP6 (EMBL:AE001863) (424 aa) fasta scores: E(): 1.3e-66, 50.81% id in 370 aa, and to Agrobacterium tumefaciens Agr_c_2609p TR:AAK87205 (EMBL:AE008067) (387 aa) fasta scores: E(): 1.5e-52, 44.08% id in 372 aa. Similar to BP3568 (52.926% identity in 376 aa overlap).


ensembl_gene_id: BP1507
symbol: BP1507
gene_biotype: protein_coding
description:
  Putative extracellular solute-binding protein; Similar to Desulfitobacterium dehalogenans ABC transporter binding protein-like protein AabH TR:Q9APF8 (EMBL:AF299117) (269 aa) fasta scores: E(): 7.4e-41, 45.98% id in 274 aa, and to Streptomyces coelicolor probable amino acid ABC transporter protein, solute-binding component Sce20.02 TR:Q9RDC3 (EMBL:AL136058) (309 aa) fasta scores: E(): 1e-39, 43.1% id in 290 aa.


ensembl_gene_id: BP1508
symbol: BP1508
gene_biotype: protein_coding
description:
  Putative inner membrane component of binding-protein-dependent transport system; Similar to Rhizobium meliloti putative amino acid ABC transporter permease protein Smb20429 TR:CAC48815 (EMBL:AL603643) (219 aa) fasta scores: E(): 1.9e-33, 52.91% id in 206 aa, and to Agrobacterium tumefaciens Agr_l_252p TR:AAK88696 (EMBL:AE008210) (221 aa) fasta scores: E(): 1.7e-30, 49.75% id in 207 aa.


ensembl_gene_id: BP1509
symbol: BP1509
gene_biotype: protein_coding
description:
  Putative inner membrane component of binding-protein-dependent transport system; Similar to Rhizobium meliloti putative amino acid ABC transporter permease protein Smb20430 TR:CAC48816 (EMBL:AL603643) (220 aa) fasta scores: E(): 3.2e-42, 55.45% id in 211 aa, and to Streptomyces coelicolor probable amino acid ABC transporter protein, integral membrane component Sce20.04 TR:Q9RDC1 (EMBL:AL136058) (216 aa) fasta scores: E(): 2.2e-36, 52.31% id in 216 aa.


ensembl_gene_id: BP1510
symbol: BP1510
gene_biotype: protein_coding
description:
  Similar to Rhizobium sp probable amino-acid ABC transporter ATP-binding protein Y4th SW:Y4TH_RHISN () (257 aa) fasta scores: E(): 2e-45, 54.29% id in 256 aa, and to Rhizobium meliloti putative amino acid ABC transporter ATP-binding protein smb20427 TR:CAC48813 (EMBL:AL603643) (261 aa) fasta scores: E(): 7.4e-45, 53.57% id in 252 aa. Similar to several B. pertussis CDSs: BP1181, P3828, BP1534, BP1855, BP1575, BP1362, P0768, and BP0054.


ensembl_gene_id: BP1512
symbol: BP1512
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa2706 TR:Q9I0D6 (EMBL:AE004698) (131 aa) fasta scores: E(): 2.7e-20, 48.06% id in 129 aa, and to Rhizobium loti Mll0824 protein TR:Q98LY2 (EMBL:AP002995) (138 aa) fasta scores: E(): 1.9e-15, 38.76% id in 129 aa.


ensembl_gene_id: BP1513
symbol: BP1513
gene_biotype: protein_coding
description:
  Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.


ensembl_gene_id: BP1514
symbol: BP1514
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Methylophilus methylotrophus putative regulatory protein FmdB SW:FMDB_METME () (112 aa) fasta scores: E(): 6.1e-09, 39.82% id in 113 aa, and to Caulobacter crescentus hypothetical protein Cc2510 TR:Q9A5E0 (EMBL:AE005919) (106 aa) fasta scores: E(): 1.2, 34.24% id in 73 aa.


ensembl_gene_id: BP1515
symbol: BP1515
gene_biotype: protein_coding
description:
  Putative transporter protein; Similar to Streptococcus salivarius UreI TR:Q55052 (EMBL:AF042344) (171 aa) fasta scores: E(): 2e-18, 39.53% id in 172 aa, and to Pseudomonas aeruginosa putative transporter protein AmiS SW:AMIS_PSEAE () (171 aa) fasta scores: E(): 1.8e-30, 51.47% id in 169 aa.


ensembl_gene_id: BP1516
symbol: fmdA
gene_biotype: protein_coding
description:
  Formamidase; Similar to Methylophilus methylotrophus formamidase FmdA SW:FMDA_METME (Q50228) (407 aa) fasta scores: E(): 2e-125, 71.53% id in 397 aa, and to Emericella nidulans formamidase FmdS TR:Q9C453 (EMBL:AF274009) (411 aa) fasta scores: E(): 2e-91, 53.56% id in 407 aa.


ensembl_gene_id: BP1517
symbol: BP1517
gene_biotype: protein_coding
description:
  Putative LuxR-family transcriptional regulator; Similar to Rhizobium loti Mll1934 protein TR:Q98JH9 (EMBL:AP002998) (390 aa) fasta scores: E(): 5.7e-09, 23.54% id in 361 aa, and to Agrobacterium tumefaciens Agr_c_3081p TR:AAK87447 (EMBL:AE008089) (365 aa) fasta scores: E(): 3e-07, 24.28% id in 350 aa.


ensembl_gene_id: BP1518
symbol: BP1518
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa4875 TR:Q9HUT8 (EMBL:AE004901) (98 aa) fasta scores: E(): 1.9e-18, 61.22% id in 98 aa, and to Deinococcus radiodurans hypothetical 12.2 kDa protein Dr0134 TR:Q9RY18 (EMBL:AE001876) (114 aa) fasta scores: E(): 3.5e-16, 47.32% id in 112 aa.


ensembl_gene_id: BP1519
symbol: fba
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: BP1520
symbol: BP1520
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hypothetical protein Cc3092 TR:Q9A3V9 (EMBL:AE005972) (134 aa) fasta scores: E(): 4.2e-22, 46.97% id in 132 aa, and to Rhizobium loti Mlr0112 protein TR:Q98NJ4 (EMBL:AP002994) (132 aa) fasta scores: E(): 1.4e-12, 34.09% id in 132 aa.


ensembl_gene_id: BP1521
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole-succinocarboxamide synthase; Similar to Corynebacterium ammoniagenes 5'-phosphoribosyl-4-N-succinocarboxamide-5-amino imidazole synthetase PurC TR:Q9RHX2 (EMBL:AB003161) (295 aa) fasta scores: E(): 8.8e-55, 57.34% id in 279 aa, and to Neisseria meningitidis phosphoribosylaminoimidazole-succinocarboxamide synthase Nmb0757 TR:Q9K063 (EMBL:AE002430) (287 aa) fasta scores: E(): 1.6e-71, 63.37% id in 273 aa.


ensembl_gene_id: BP1522
symbol: BP1522
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Alcaligenes eutrophus hypothetical 10.9 kDa protein TR:Q9ZAL5 (EMBL:Y10831) (98 aa) fasta scores: E(): 1.1e-16, 71.93% id in 57 aa, and to Xylella fastidiosa hypothetical protein Xf2490 TR:Q9PAL4 (EMBL:AE004057) (100 aa) fasta scores: E(): 6.4e-12, 67.24% id in 58 aa.


ensembl_gene_id: BP1523
symbol: BP1523
gene_biotype: protein_coding
description:
  Putative DNA-binding protein; Similar to Alcaligenes eutrophus hypothetical 14.2 kDa protein TR:Q9ZAL4 (EMBL:Y10831) (133 aa) fasta scores: E(): 3.3e-41, 77.27% id in 132 aa, and to Xylella fastidiosa hypothetical protein Xf2491 TR:Q9PAL3 (EMBL:AE004057) (133 aa) fasta scores: E(): 1.9e-34, 65.15% id in 132 aa.


ensembl_gene_id: BP1525
symbol: BP1525
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Agrobacterium tumefaciens Agr_l_2587p TR:AAK89860 (EMBL:AE008329) (171 aa) fasta scores: E(): 0.96, 29.03% id in 155 aa.


ensembl_gene_id: BP1526
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: BP1527
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: BP1528
symbol: BP1528
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: BP1529
symbol: BP1529
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative amino-acid ABC transporter binding protein YhdW precursor YhdW or B3268 SW:YHDW_ECOLI (P45766) (341 aa) fasta scores: E(): 2.5e-70, 54.22% id in 343 aa, and to Rhizobium meliloti probable general L-amino acid-binding periplasmic ABC transporter protein TR:CAC46057 (EMBL:AL591787) (341 aa) fasta scores: E(): 3.4e-70, 53.93% id in 343 aa.


ensembl_gene_id: BP1530
symbol: BP1530
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Pseudomonas putida PcaR protein TR:Q9R9T0 (EMBL:AJ252090) (291 aa) fasta scores: E(): 6.5e-21, 31.66% id in 240 aa, and to Pseudomonas aeruginosa transcriptional regulator PcaR or Pa0155 TR:Q9I6X7 (EMBL:AE004453) (279 aa) fasta scores: E(): 7.9e-22, 32.66% id in 248 aa.


ensembl_gene_id: BP1531
symbol: BP1531
gene_biotype: protein_coding
description:
  Putative arginase; Similar to Pseudomonas aeruginosa agmatinase SpeB1 or Pa0288 TR:Q9I6K2 (EMBL:AE004466) (318 aa) fasta scores: E(): 5.2e-33, 39.8% id in 304 aa, and to Streptomyces coelicolor agmatinase SpeB TR:Q9L083 (EMBL:AL163641) (302 aa) fasta scores: E(): 3.7e-32, 40.92% id in 281 aa; Belongs to the arginase family.


ensembl_gene_id: BP1532
symbol: BP1532
gene_biotype: protein_coding
description:
  Putative amino acid-binding periplasmic protein; Similar to Escherichia coli cystine-binding periplasmic protein precursor FliY or B1920 SW:FLIY_ECOLI (P39174) (266 aa) fasta scores: E(): 3.8e-16, 30.38% id in 260 aa, and to Salmonella typhimurium FliY TR:Q9ZNM2 (EMBL:AB010947) (266 aa) fasta scores: E(): 1.9e-16, 31.03% id in 261 aa.


ensembl_gene_id: BP1533
symbol: BP1533
gene_biotype: protein_coding
description:
  Putative inner membrane component of binding-protein-dependent transport system; Similar to Thermotoga maritima amino acid ABC transporter, permease protein Tm0592 TR:Q9WZ61 (EMBL:AE001734) (216 aa) fasta scores: E(): 1e-28, 42.57% id in 202 aa, and to Clostridium acetobutylicum amino acid ABC transporter, permease component Cac3619 TR:Q97D61 (EMBL:AE007858) (217 aa) fasta scores: E(): 1.4e-27, 38.42% id in 216 aa.


ensembl_gene_id: BP1534
symbol: BP1534
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical amino-acid ABC transporter ATP-binding protein YhdZ YhdZ or B3271 SW:YHDZ_ECOLI (P45769) (252 aa) fasta scores: E(): 1.5e-58, 66.93% id in 245 aa, and to Pseudomonas marginalis pvalfalfae. hypothetical 28.9 kDa protein TR:O68330 (EMBL:AF033673) (254 aa) fasta scores: E(): 5.2e-59, 67.48% id in 243 aa. Similar to several B. pertussis CDSs: BP1181, P3828, BP0054, BP1855, BP1575, BP1362, P0768, and BP1510.


ensembl_gene_id: BP1535
symbol: BP1535
gene_biotype: protein_coding
description:
  Putative thiamine-pyrophosphate-requiring enzyme; Similar to Rhizobium loti acetolactate synthase I Mll3567 TR:Q98FY4 (EMBL:AP003002) (517 aa) fasta scores: E(): 3.9e-108, 59.38% id in 522 aa, and to Caulobacter crescentus thiamine-pyrophosphate-requiring enzyme Cc0393 TR:Q9AB41 (EMBL:AE005712) (512 aa) fasta scores: E(): 2.7e-86, 51.34% id in 520 aa.


ensembl_gene_id: BP1536
symbol: BP1536
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr2698 protein TR:Q98HV2 (EMBL:AP003000) (156 aa) fasta scores: E(): 2.3e-18, 42.75% id in 145 aa, and to Agrobacterium tumefaciens Agr_c_4066p TR:AAK87976 (EMBL:AE008139) (169 aa) fasta scores: E(): 3.9e-18, 40.97% id in 144 aa.


ensembl_gene_id: BP1537
symbol: gcdH
gene_biotype: protein_coding
description:
  Similar to Mus musculus glutaryl-CoA dehydrogenase, mitochondrial precursor GcdH SW:GCDH_MOUSE (Q60759) (438 aa) fasta scores: E(): 3.4e-105, 65.99% id in 397 aa, and to Pseudomonas aeruginosa glutaryl-CoA dehydrogenase GcdH or Pa0447 TR:Q9I671 (EMBL:AE004482) (393 aa) fasta scores: E(): 1.1e-138, 84.38% id in 397 aa.


ensembl_gene_id: BP1538
symbol: ilvG
gene_biotype: protein_coding
description:
  Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG or B3767 SW:ILVG_ECOLI (P00892) (548 aa) fasta scores: E(): 1.6e-49, 32.53% id in 544 aa, and to Rhizobium meliloti putative acetolactate synthase isozyme II large subunit protein TR:CAC46784 (EMBL:AL591789) (548 aa) fasta scores: E(): 6.4e-139, 62.63% id in 546 aa; Belongs to the TPP enzyme family.


ensembl_gene_id: BP1539
symbol: BP1539
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa0448 TR:Q9I670 (EMBL:AE004482) (302 aa) fasta scores: E(): 3.2e-45, 44.33% id in 291 aa, and to Rhizobium meliloti probable transcription regulator protein Smc04882 TR:CAC47866 (EMBL:AL591793) (297 aa) fasta scores: E(): 8.5e-39, 37.75% id in 294 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1540
symbol: xerD
gene_biotype: protein_coding
description:
  Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: BP1541
symbol: BP1541
gene_biotype: protein_coding
description:
  Similar to Burkholderia solanacearum conserved hypothetical protein Rsc2545 TR:CAD16252 (EMBL:AL646070) (163 aa) fasta scores: E(): 7.4e-44, 69.75% id in 162 aa, and to Neisseria meningitidis hypothetical protein Nma1462 TR:Q9JU74 (EMBL:AL162756) (159 aa) fasta scores: E(): 2.6e-27, 44.72% id in 161 aa; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: BP1542
symbol: BP1542
gene_biotype: protein_coding
description:
  Similar to Burkholderia solanacearum conserved hypothetical protein Rsc0416 TR:CAD13944 (EMBL:AL646059) (192 aa) fasta scores: E(): 1.1e-59, 77.6% id in 192 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4336 TR:Q9HW65 (EMBL:AE004850) (194 aa) fasta scores: E(): 4.2e-58, 78.53% id in 191 aa. Also similar to BP0064, 65.104% identity (65.104% ungapped) in 192 aa overlap.


ensembl_gene_id: BP1543
symbol: BP1543
gene_biotype: protein_coding
description:
  Similar to Burkholderia solanacearum hypothetical protein Rsc0415 TR:CAD13943 (EMBL:AL646059) (134 aa) fasta scores: E(): 1.7e-32, 73.55% id in 121 aa, and to Agrobacterium tumefaciens Agr_l_852p TR:AAK88997 (EMBL:AE008241) (152 aa) fasta scores: E(): 5.8e-19, 49.13% id in 116 aa.


ensembl_gene_id: BP1545
symbol: pbpG
gene_biotype: protein_coding
description:
  Probable D-alanyl-D-alanine carboxypeptidase; Similar to Escherichia coli penicillin-binding protein 7 precursor PbpG or B2134 SW:PBP7_ECOLI (P33364) (313 aa) fasta scores: E(): 3.1e-43, 49.81% id in 263 aa, and to Burkholderia solanacearum putative D-alanyl-D-alanine-endopeptidase Rsc1609 TR:CAD15311 (EMBL:AL646065) (375 aa) fasta scores: E(): 6.1e-50, 59.83% id in 244 aa; Belongs to the peptidase S11 family.


ensembl_gene_id: BP1546
symbol: BP1546
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa probable MFS transporter Pa1286 TR:Q9I458 (EMBL:AE004558) (399 aa) fasta scores: E(): 9.9e-65, 49.61% id in 389 aa, and to Agrobacterium tumefaciens Agr_c_1918p TR:AAK86848 (EMBL:AE008034) (414 aa) fasta scores: E(): 4.1e-56, 41.87% id in 406 aa. Also similar to BP1973, 42.965% identity (43.959% ungapped) in 398 aa overlap.


ensembl_gene_id: BP1547
symbol: BP1547
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Weakly similar to Caulobacter crescentus hypothetical protein Cc3537 TR:Q9A2M0 (EMBL:AE006012) (996 aa) fasta scores: E(): 1.6e-09, 26.54% id in 859 aa.


ensembl_gene_id: BP1548
symbol: BP1548
gene_biotype: protein_coding
description:
  Putative nuclease/helicase; Similar to Escherichia coli exodeoxyribonuclease V beta chain RecB or RorA or B2820 SW:EX5B_ECOLI (P08394) (1180 aa) fasta scores: E(): 0.0011, 23.34% id in 1118 aa, and to Rhizobium meliloti putative ATP-dependent nuclease/helicase protein Smc02760 TR:CAC41421 (EMBL:AL591782) (1189 aa) fasta scores: E(): 6.7e-17, 27.9% id in 1229 aa; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: BP1549
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III subunit Tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: BP1550
symbol: BP1550
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: BP1551
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: BP1555
symbol: BP1555
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Salmonella typhimurium LT2 putative inner membrane protein Stm2486 TR:AAL21380 (EMBL:AE008812) (287 aa) fasta scores: E(): 1.1e-58, 54.16% id in 288 aa, and to Yersinia pestis putative membrane protein Ypo3058 TR:CAC92300 (EMBL:AJ414155) (288 aa) fasta scores: E(): 6.4e-58, 52.92% id in 291 aa.


ensembl_gene_id: BP1556
symbol: BP1556
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nmb0436 TR:Q9K0X0 (EMBL:AE002400) (213 aa) fasta scores: E(): 9.9e-40, 54.54% id in 209 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3199 TR:Q9HZ41 (EMBL:AE004744) (209 aa) fasta scores: E(): 4.8e-38, 49.26% id in 203 aa; Belongs to the SUA5 family.


ensembl_gene_id: BP1558
symbol: BP1558
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium loti Mlr5529 protein TR:Q98BK7 (EMBL:AP003006) (367 aa) fasta scores: E(): 8.4e-57, 45.92% id in 368 aa, and to Agrobacterium tumefaciens Agr_c_487p TR:AAK86100 (EMBL:AE007967) (364 aa) fasta scores: E(): 5e-42, 36.92% id in 371 aa.


ensembl_gene_id: BP1560
symbol: BP1560
gene_biotype: protein_coding
description:
  Putative exported protein (Pseudogene); G(-) in pertussis; G(CCGCGCTGGCG) in bronchiseptica and parapertussis.


ensembl_gene_id: BP1561
symbol: BP1561
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical signal peptide protein Smc00402 TR:CAC41759 (EMBL:AL591783) (426 aa) fasta scores: E(): 3e-56, 63.07% id in 436 aa, and to Agrobacterium tumefaciens Agr_c_493p TR:AAK86103 (EMBL:AE007967) (447 aa) fasta scores: E(): 3.2e-56, 63.69% id in 438 aa.


ensembl_gene_id: BP1562
symbol: BP1562
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3436 TR:Q9HYH0 (EMBL:AE004764) (185 aa) fasta scores: E(): 3e-32, 48.86% id in 176 aa, and to Deinococcus radiodurans conserved hypothetical protein Dr2141 TR:Q9RSI3 (EMBL:AE002048) (184 aa) fasta scores: E(): 2.1e-15, 31.79% id in 173 aa.


ensembl_gene_id: BP1563
symbol: BP1563
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida chromate reductase ChrR TR:AAK56852 (EMBL:AF375641) (186 aa) fasta scores: E(): 5.4e-24, 42.13% id in 178 aa, and to Rhizobium loti Mlr0414 protein TR:Q98MW2 (EMBL:AP002994) (192 aa) fasta scores: E(): 1.5e-26, 42.3% id in 182 aa.


ensembl_gene_id: BP1565
symbol: BP1565
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Streptomyces coelicolor hypothetical 9.6 kDa protein Scm10.03 TR:Q9RCZ5 (EMBL:AL133469) (85 aa) fasta scores: E(): 9.8e-16, 59.15% id in 71 aa, and to Rhizobium meliloti hypothetical protein Smb20068 TR:CAC48468 (EMBL:AL603642) (69 aa) fasta scores: E(): 1.3e-14, 61.76% id in 68 aa.


ensembl_gene_id: BP1566
symbol: mutS
gene_biotype: protein_coding
description:
  Mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: BP1567
symbol: BP1567
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa2630 TR:Q9I0K8 (EMBL:AE004691) (389 aa) fasta scores: E(): 1.6e-40, 39.85% id in 409 aa, and to Escherichia coli hypothetical protein YcfD ycfd or b1128 SW:YCFD_ECOLI (P27431) (373 aa) fasta scores: E(): 3.3e-31, 35.24% id in 383 aa.


ensembl_gene_id: BP1568
symbol: fim3
gene_biotype: protein_coding
description:
  Serotype 3 fimbrial subunit precursor; Bordetella pertussis is the causative agent of whooping cough. An essential step in the disease process is the attachment of the bacteria to the ciliated epithelium of the respiratory tract, enabling the organism to resist normal host-clearance mechanisms. It is unclear which bacterial cell surface component are responsible for adherence but the fimbriae of B.pertussis are prime candidates for being involved in this process; Belongs to the fimbrial protein family.


ensembl_gene_id: BP1569
symbol: BP1569
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Burkholderia solanacearum probable transmembrane protein Rsc1146 TR:CAD14848 (EMBL:AL646062) (398 aa) fasta scores: E(): 8.6e-37, 41.99% id in 381 aa, and to Neisseria meningitidis hypothetical protein Nmb0928 TR:Q9JZR5 (EMBL:AE002444) (398 aa) fasta scores: E(): 1.7e-32, 32.97% id in 376 aa.


ensembl_gene_id: BP1570
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: BP1573
symbol: glnH
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutamine-binding periplasmic protein precursor GlnH or B0811 or Z1033 or Ecs0889 SW:GLNH_ECOLI (P10344) (248 aa) fasta scores: E(): 4.6e-52, 60.81% id in 245 aa, and to Salmonella typhimurium high-affinity periplasmic glutamine binding protein TR:P74886 (EMBL:U73111) (248 aa) fasta scores: E(): 1.9e-51, 61.76% id in 238 aa; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: BP1574
symbol: glnP
gene_biotype: protein_coding
description:
  Similar to Escherichia coli, and glutamine transport system permease protein GlnP or B0810 or Z1032 or Ecs0888 SW:GLNP_ECOLI (P10345) (219 aa) fasta scores: E(): 5.6e-48, 60.9% id in 220 aa, and to Salmonella typhimurium glutamine transport system permease TR:P74887 (EMBL:U73111) (219 aa) fasta scores: E(): 3.6e-47, 60% id in 220 aa.


ensembl_gene_id: BP1575
symbol: glnQ-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutamine transport ATP-binding protein GlnQ or B0809 SW:GLNQ_ECOLI (P10346) (240 aa) fasta scores: E(): 2.8e-58, 71.66% id in 240 aa, and to Salmonella typhimurium glutamine transport ATP-binding protein GlnQ TR:P74888 (EMBL:U73111) (240 aa) fasta scores: E(): 8.2e-58, 70.83% id in 240 aa. Similar to several B. pertussis CDSs: BP1181, P3828, BP1534, BP1855, BP0054, BP1362, P0768, and BP1510.


ensembl_gene_id: BP1576
symbol: spoT
gene_biotype: protein_coding
description:
  Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: BP1577
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: BP1579
symbol: BP1579
gene_biotype: protein_coding
description:
  Putative cytochrome C; Similar to Pseudomonas aeruginosa hypothetical protein Pa2481 TR:Q9I101 (EMBL:AE004676) (291 aa) fasta scores: E(): 2.4e-61, 58.8% id in 284 aa, and to Wolinella succinogenes CytA protein precursor cytA TR:CAC50081 (EMBL:AJ318778) (371 aa) fasta scores: E(): 5e-16, 36.14% id in 285 aa.


ensembl_gene_id: BP1580
symbol: BP1580
gene_biotype: protein_coding
description:
  Probable cytochrome C; Similar to Thiobacillus ferrooxidans putative cytochrome C-552 diheme precursor CycA TR:Q9KIW6 (EMBL:AF220499) (260 aa) fasta scores: E(): 1e-14, 34.84% id in 221 aa, and to Pseudomonas aeruginosa probable cytochrome C Pa2482 TR:Q9I100 (EMBL:AE004676) (217 aa) fasta scores: E(): 6.6e-25, 46.11% id in 206 aa.


ensembl_gene_id: BP1581
symbol: BP1581
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative oxidoreductase Scc75a.33 TR:Q9RKP1 (EMBL:AL133220) (263 aa) fasta scores: E(): 3.1e-58, 67.33% id in 248 aa, and to Rhizobium loti oxidoreductase Mll2989 TR:Q98H81 (EMBL:AP003000) (251 aa) fasta scores: E(): 2e-52, 57.49% id in 247 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: BP1582
symbol: BP1582
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3472 TR:Q9HYD4 (EMBL:AE004768) (198 aa) fasta scores: E(): 3.5e-21, 42.22% id in 180 aa, and to Xylella fastidiosa hypothetical protein Xf0653 TR:Q9PFK4 (EMBL:AE003909) (212 aa) fasta scores: E(): 1.9e-18, 40.67% id in 177 aa.


ensembl_gene_id: BP1583
symbol: amn
gene_biotype: protein_coding
description:
  Putative nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.


ensembl_gene_id: BP1584
symbol: BP1584
gene_biotype: protein_coding
description:
  Putative DNA-binding protein; Similar to Rickettsia conorii hypothetical protein Rc1223 TR:AAL03761 (EMBL:AE008669) (142 aa) fasta scores: E(): 4.2e-09, 42.35% id in 85 aa, and to Agrobacterium tumefaciens Agr_c_3184p TR:AAK87504 (EMBL:AE008095) (95 aa) fasta scores: E(): 0.0021, 34.92% id in 63 aa.


ensembl_gene_id: BP1585
symbol: BP1585
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to an internal region of EDTA-degrading bacterium BNC1 ribosomal protein L1 TR:Q9EVJ4 (EMBL:AF176664) (232 aa) fasta scores: E(): 1.1, 42.42% id in 33 aa.


ensembl_gene_id: BP1586
symbol: BP1586
gene_biotype: protein_coding
description:
  Similar to Rickettsia conorii hypothetical protein Rc1222 TR:AAL03760 (EMBL:AE008669) (78 aa) fasta scores: E(): 0.0014, 40.9% id in 44 aa.


ensembl_gene_id: BP1587
symbol: BP1587
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli protein YicC or B3644 SW:YICC_ECOLI (P23839) (287 aa) fasta scores: E(): 7e-13, 37.86% id in 309 aa, and to Pseudomonas aeruginosa hypothetical protein Pa5335 TR:Q9HTM3 (EMBL:AE004946) (287 aa) fasta scores: E(): 2.8e-16, 40.9% id in 308 aa.


ensembl_gene_id: BP1588
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: BP1589
symbol: BP1589
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa0881 TR:Q9I564 (EMBL:AE004522) (450 aa) fasta scores: E(): 3.3e-104, 63.9% id in 446 aa, and to Methanothermobacter thermautotrophicus conserved protein Mth965 TR:O27046 (EMBL:AE000870) (452 aa) fasta scores: E(): 1.1e-29, 31.32% id in 447 aa.


ensembl_gene_id: BP1590
symbol: BP1590
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator pa0877 TR:Q9I568 (EMBL:AE004522) (298 aa) fasta scores: E(): 3.2e-53, 47.63% id in 296 aa, and to Acinetobacter lwoffii hypothetical 32.3 kDa protein TR:O86997 (EMBL:U77659) (296 aa) fasta scores: E(): 1.5e-38, 37.71% id in 289 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1591
symbol: BP1591
gene_biotype: protein_coding
description:
  Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 2.2e-49, 39.74% id in 556 aa, and to Salmonella typhimurium LT2 methyl-accepting chemotaxis protein I, serine sensor receptor Tsr TR:AAL23351 (EMBL:AE008913) (553 aa) fasta scores: E(): 4.5e-50, 40.9% id in 533 aa.


ensembl_gene_id: BP1592
symbol: BP1592
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa3258 TR:Q9HYY2 (EMBL:AE004748) (601 aa) fasta scores: E(): 1.4e-72, 37.3% id in 571 aa, and to Agrobacterium tumefaciens Agr_c_1510p TR:AAK86632 (EMBL:AE008015) (603 aa) fasta scores: E(): 3e-46, 30.32% id in 587 aa.


ensembl_gene_id: BP1593
symbol: BP1593
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: BP1595
symbol: BP1595
gene_biotype: protein_coding
description:
  Putative porphyrin oxidoreductase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: BP1596
symbol: glnA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutamine synthetase GlnA or B3870 or Z5406 or Ecs4792 SW:GLNA_ECOLI (P06711) (468 aa) fasta scores: E(): 1.9e-129, 64.95% id in 468 aa, and to Herbaspirillum seropedicae glutamine synthetase GlnA TR:O86055 (EMBL:AF082873) (471 aa) fasta scores: E(): 1.6e-160, 81.5% id in 465 aa.


ensembl_gene_id: BP1597
symbol: glnL
gene_biotype: protein_coding
description:
  Similar to Escherichia coli nitrogen regulation protein NR(II) GlnL or NtrB or GlnR or B3869 or Z5405 or Ecs4791 SW:NTRB_ECOLI (P06712) (349 aa) fasta scores: E(): 2.4e-37, 41.42% id in 350 aa, and to Herbaspirillum seropedicae histidine kinase NtrB TR:O86056 (EMBL:AF082873) (364 aa) fasta scores: E(): 3e-55, 48.59% id in 356 aa.


ensembl_gene_id: BP1598
symbol: glnG
gene_biotype: protein_coding
description:
  Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: BP1599
symbol: BP1599
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical transcriptional regulator YeeY or B2015 SW:YEEY_ECOLI (P76369) (309 aa) fasta scores: E(): 5.6e-33, 39.38% id in 292 aa, and to Vibrio cholerae transcriptional regulator, LysR family Vca0575 TR:Q9KM14 (EMBL:AE004388) (295 aa) fasta scores: E(): 1.7e-32, 37.11% id in 291 aa.


ensembl_gene_id: BP1600
symbol: BP1600
gene_biotype: protein_coding
description:
  Similar to Synechocystis sp hypothetical 25.7 kDa protein Sll1773 SW:YH73_SYNY3 (P73623) (232 aa) fasta scores: E(): 3.3e-52, 55.79% id in 233 aa, and to Escherichia coli protein YhhW or B3439 SW:YHHW_ECOLI (P46852) (231 aa) fasta scores: E(): 1.1e-46, 52.79% id in 233 aa; Belongs to the pirin family.


ensembl_gene_id: BP1601
symbol: BP1601
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti pirin-related protein Mlr7473 TR:Q985Y4 (EMBL:AP003011) (306 aa) fasta scores: E(): 1.1e-56, 51.74% id in 286 aa, and to Agrobacterium tumefaciens Agr_c_1354p TR:AAK86555 (EMBL:AE008008) (307 aa) fasta scores: E(): 2.6e-55, 48.61% id in 288 aa; Belongs to the pirin family.


ensembl_gene_id: BP1604
symbol: BP1604
gene_biotype: protein_coding
description:
  Probable ATP-binding component of ABC transporter (Pseudogene); ScanRegExp hit to PS00017, ATP/GTP-binding site motif A (P-loop).


ensembl_gene_id: BP1605
symbol: BP1605
gene_biotype: protein_coding
description:
  Similar to Neisseria gonorrhoeae major ferric iron binding protein precursor FbP SW:FBP_NEIGO (P17259) (330 aa) fasta scores: E(): 2.1e-13, 27.55% id in 352 aa, and to Agrobacterium tumefaciens Agr_c_715p TR:AAK86222 (EMBL:AE007978) (351 aa) fasta scores: E(): 1.1e-85, 65.33% id in 349 aa.


ensembl_gene_id: BP1606
symbol: fpr
gene_biotype: protein_coding
description:
  Similar to Azotobacter vinelandii ferredoxin--NADP reductase Fpr SW:FENR_AZOVI (Q44532) (257 aa) fasta scores: E(): 1.1e-70, 70.98% id in 255 aa, and to Pseudomonas aeruginosa ferredoxin--NADP+ reductase Fpr or Pa3397 TR:Q9HYK7 (EMBL:AE004761) (258 aa) fasta scores: E(): 6e-73, 71.7% id in 258 aa. Also similar to BP3581, 40.000% identity (42.276% ungapped) in 260 aa overlap.


ensembl_gene_id: BP1607
symbol: BP1607
gene_biotype: protein_coding
description:
  Similar to Yersinia pestis LysR-family regulatory protein Ypo0669 TR:CAC89523 (EMBL:AJ414144) (303 aa) fasta scores: E(): 3.9e-68, 63.14% id in 293 aa, and to Burkholderia solanacearum probable transcription regulator protein Rsc1152 TR:CAD14854 (EMBL:AL646063) (297 aa) fasta scores: E(): 4.2e-72, 66.66% id in 291 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1609
symbol: DkgB
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); 25 bp deletion in pertussis relative to parapertussis following this codon.


ensembl_gene_id: BP1611
symbol: BP1611
gene_biotype: protein_coding
description:
  Putative autotransporter (Pseudogene); ScanRegExp hit to PS00237, G-protein coupled receptors family 1 signature.


ensembl_gene_id: BP1612
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: BP1613
symbol: BP1613
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa5344 TR:Q9HTL4 (EMBL:AE004946) (310 aa) fasta scores: E(): 7.8e-62, 54.15% id in 301 aa, and to Neisseria meningitidis transcriptional regulator, LysR family Nmb0173 TR:Q9K1H8 (EMBL:AE002374) (306 aa) fasta scores: E(): 2.7e-53, 48.86% id in 307 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1614
symbol: BP1614
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus transcriptional regulator, LysR family Cc1474 TR:Q9A889 (EMBL:AE005821) (298 aa) fasta scores: E(): 2.2e-30, 41.4% id in 256 aa, and to Rhizobium loti probable transcriptional regulator Mlr1930 TR:Q98JI3 (EMBL:AP002998) (297 aa) fasta scores: E(): 2.6e-30, 37.54% id in 293 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1615
symbol: BP1615
gene_biotype: protein_coding
description:
  Similar to Burkholderia solanacearum probable transmembrane aldehyde dehydrogenase oxidoreductase protein Rsp1055 TR:CAD18206 (EMBL:AL646082) (499 aa) fasta scores: E(): 3.7e-110, 61.27% id in 501 aa, and to Pseudomonas aeruginosa probable aldehyde dehydrogenase Pa0130 TR:Q9I702 (EMBL:AE004451) (497 aa) fasta scores: E(): 6.9e-95, 53.8% id in 500 aa.


ensembl_gene_id: BP1616
symbol: dps
gene_biotype: protein_coding
description:
  Putative DNA-binding protein; Similar to Burkholderia solanacearum putative DNA protection during starvation or oxidative stress transcription regulator protein Dps TR:CAD16394 (EMBL:AL646071) (166 aa) fasta scores: E(): 2.1e-39, 64.24% id in 165 aa, and to Pseudomonas aeruginosa probable DNA-binding stress protein Pa0962 TR:Q9I4Z7 (EMBL:AE004530) (156 aa) fasta scores: E(): 3.8e-37, 69.07% id in 152 aa; Belongs to the Dps family.


ensembl_gene_id: BP1617
symbol: BP1617
gene_biotype: protein_coding
description:
  C-terminal region of a putative polysaccharide biosynthesis protein (partial); Pseudogene. This CDS is the C-terminal region of BP1618.


ensembl_gene_id: BP1618
symbol: tviD
gene_biotype: protein_coding
description:
  Putative N-terminal region of capsular polysaccharide biosynthesis protein (partial); Partial. The C-terminal region of this CDS is downstream and on the opposite orientation, BP1617. Similar (over the N-terminal region) to Salmonella typhi Vi polysaccharide biosynthesis protein TviD or Sty4659 SW:TVID_SALTI (Q04974) (831 aa) fasta scores: E(): 6e-18, 30.95% id in 252 aa, and to Citrobacter freundii Vi biosynthesis protein VipC TR:Q9AP44 (EMBL:AF316551) (831 aa) fasta scores: E(): 9.1e-18, 30.15% id in 252 aa.


ensembl_gene_id: BP1620
symbol: BP1620
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative glycosyl transferase Scac2.02C TR:Q9F324 (EMBL:AL392189) (257 aa) fasta scores: E(): 9.4e-10, 27.08% id in 240 aa, and to Haemophilus influenzae putative glycosyl transferase Hi0868 SW:Y868_HAEIN (Q57022) (250 aa) fasta scores: E(): 4.4e-10, 39.62% id in 106 aa.


ensembl_gene_id: BP1623
symbol: kpsM
gene_biotype: protein_coding
description:
  Similar to Escherichia coli polysialic acid transport protein KpsM SW:KPM2_ECOLI (P24584) (258 aa) fasta scores: E(): 1.3e-24, 31.49% id in 254 aa, and to Rhizobium meliloti putative cell surface polysaccharide export ABC-2 transporter permease protein, close relative to Wzm1y20833 TR:CAC48962 (EMBL:AL603644) (274 aa) fasta scores: E(): 7.7e-29, 36.21% id in 243 aa.


ensembl_gene_id: BP1624
symbol: kpsT
gene_biotype: protein_coding
description:
  Similar to Escherichia coli polysialic acid transport ATP-binding protein KpsT SW:KST5_ECOLI (P24586) (224 aa) fasta scores: E(): 4.7e-25, 39.7% id in 204 aa, and to Pasteurella multocida HexA hexa or pm0781 TR:O85464 (EMBL:AF067175) (219 aa) fasta scores: E(): 2.6e-28, 43.47% id in 207 aa.


ensembl_gene_id: BP1625
symbol: kpsE
gene_biotype: protein_coding
description:
  Similar to Escherichia coli capsule polysaccharide export inner-membrane protein KpsE SW:KSE5_ECOLI (P42214) (382 aa) fasta scores: E(): 2.8e-21, 26.74% id in 359 aa, and to Neisseria meningitidis capsule polysaccharide export inner-membrane protein CtrB or Nmb0072 SW:CTRB_NEIMB (P32014) (387 aa) fasta scores: E(): 2.7e-22, 29.49% id in 373 aa.


ensembl_gene_id: BP1626
symbol: wbpT
gene_biotype: protein_coding
description:
  Similar to Salmonella typhi Vi polysaccharide biosynthesis protein VipC or TviE or Sty4656 SW:VIPC_SALTI (Q04975) (578 aa) fasta scores: E(): 5.7e-49, 33.15% id in 567 aa, and to Citrobacter freundii Vi biosynthesis protein VipD TR:Q9AP43 (EMBL:AF316551) (578 aa) fasta scores: E(): 5e-47, 32.68% id in 566 aa.


ensembl_gene_id: BP1627
symbol: vipC
gene_biotype: protein_coding
description:
  Similar to Citrobacter freundii Vi biosynthesis protein VipC TR:Q9AP44 (EMBL:AF316551) (831 aa) fasta scores: E(): 2.5e-10, 23.73% id in 257 aa.


ensembl_gene_id: BP1628
symbol: wza
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative polysaccharide export protein Wza precursor Wza or B2062 or Z3227 or Ecs2867 SW:WZA_ECOLI (P76388) (379 aa) fasta scores: E(): 7.9e-23, 32.14% id in 364 aa, and to Salmonella typhimurium putative outer membrane lipoprotein Wza TR:Q9F7B3 (EMBL:AF285084) (378 aa) fasta scores: E(): 6e-23, 32.15% id in 367 aa.


ensembl_gene_id: BP1629
symbol: wbpO
gene_biotype: protein_coding
description:
  Capsular polysaccharide biosynthesis protein; Similar to Pseudomonas aeruginosa WbpO TR:Q9RHD7 (EMBL:AF035937) (422 aa) fasta scores: E(): 3.1e-132, 80.23% id in 420 aa, and to Plesiomonas shigelloides orf1p WbgT TR:Q9S0Y5 (EMBL:AB025970) (437 aa) fasta scores: E(): 2.2e-120, 70.69% id in 430 aa. Almost identical to BP3150, 99.762% identity in 420 aa overlap; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: BP1630
symbol: wbpP
gene_biotype: protein_coding
description:
  Capsular polysaccharide biosynthesis protein; Similar to Pseudomonas aeruginosa WbpP TR:Q9RHD6 (EMBL:AF035937) (341 aa) fasta scores: E(): 9.9e-97, 69.79% id in 341 aa, and to Salmonella typhi Vi polysaccharide biosynthesis protein VipB or TviC or Sty4660 SW:VIPB_SALTI (Q04973) (348 aa) fasta scores: E(): 2.8e-85, 63.17% id in 334 aa.


ensembl_gene_id: BP1631
symbol: wcbA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli capsule polysaccharide export protein KpsC SW:KSC5_ECOLI (P42217) (675 aa) fasta scores: E(): 1.9e-87, 42.81% id in 689 aa, and to Pasteurella multocida LipA TR:Q9L9L5 (EMBL:AF169324) (682 aa) fasta scores: E(): 1.5e-98, 42.28% id in 629 aa.


ensembl_gene_id: BP1635
symbol: BP1635
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); 4 probable transmembrane helices predicted for BP1634 by TMHMM2.0 at aa 40-62, 73-95, 108-130 and 145-167.


ensembl_gene_id: BP1636
symbol: BP1636
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti nonspecific acid phosphatase precursor NapE TR:AAK39518 (EMBL:AF354653) (334 aa) fasta scores: E(): 1.7e-72, 56.96% id in 323 aa.


ensembl_gene_id: BP1638
symbol: BP1638
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa3074 TR:Q9HZD4 (EMBL:AE004731) (586 aa) fasta scores: E(): 1.1e-15, 33.07% id in 508 aa, and to Vibrio cholerae hypothetical protein Vca0171 TR:Q9KMZ5 (EMBL:AE004357) (646 aa) fasta scores: E(): 4.8e-11, 29.45% id in 499 aa.


ensembl_gene_id: BP1639
symbol: BP1639
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Bacteroides fragilis BatA SWALL:Q9X4N3 (EMBL:AF116251) (327 aa) fasta scores: E(): 1.4e-13, 31.29% id in 262 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3073 SWALL:Q9HZD5 (EMBL:AE004731) (340 aa) fasta scores: E(): 1.8e-31, 41.44% id in 345 aa.


ensembl_gene_id: BP1640
symbol: BP1640
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); (C)1 in pertussis; (C)2 in parapertussis and bronchiseptica.


ensembl_gene_id: BP1641
symbol: BP1641
gene_biotype: protein_coding
description:
  Putative regulatory protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3070 TR:Q9HZD8 (EMBL:AE004731) (326 aa) fasta scores: E(): 4e-61, 54.85% id in 319 aa, and to Vibrio cholerae MoxR-related protein vca0175 TR:Q9KMZ1 (EMBL:AE004357) (318 aa) fasta scores: E(): 2.4e-58, 53.54% id in 310 aa.


ensembl_gene_id: BP1643
symbol: BP1643
gene_biotype: protein_coding
description:
  Putative exported protein (Pseudogene); Signal peptide predicted for BP1642 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.730 between residues 25 and 26.


ensembl_gene_id: BP1644
symbol: BP1644
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein Sma1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 8.7e-47, 41.46% id in 328 aa, and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 2.6e-45, 42.07% id in 328 aa.


ensembl_gene_id: BP1645
symbol: BP1645
gene_biotype: protein_coding
description:
  Probable short-chain dehydrogenase; Similar to Mycobacterium tuberculosis dehydrogenase Rv2857c or Mtv003.03C TR:O33339 (EMBL:AL008883) (258 aa) fasta scores: E(): 2.7e-28, 40.47% id in 252 aa, and to Rhizobium sp putative short-chain type dehydrogenase/reductase Y4lA SW:Y4LA_RHISN (P55541) (278 aa) fasta scores: E(): 5.9e-28, 36.86% id in 255 aa.


ensembl_gene_id: BP1646
symbol: BP1646
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa1170 TR:Q9I4G7 (EMBL:AE004547) (244 aa) fasta scores: E(): 2.6e-42, 54.27% id in 234 aa, and to Bacillus subtilis YjbE protein TR:O31603 (EMBL:Z99110) (218 aa) fasta scores: E(): 2.6e-26, 46.66% id in 180 aa. Also similar to BP2538 (69.456% identity in 239 aa overlap), and to BP2539 (45.982% identity in 224 aa overlap).


ensembl_gene_id: BP1649
symbol: livG-3
gene_biotype: protein_coding
description:
  Putative branched chain amino acid transport permease (Pseudogene); 2 probable transmembrane helices predicted for BP1648 by TMHMM2.0 at aa 5-27 and 32-54.


ensembl_gene_id: BP1650
symbol: livF-3
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF or B3454 SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: E(): 1.9e-34, 46.12% id in 232 aa, and to Streptomyces coelicolor putative branched chain amino acid transport ATP-binding protein Sc7h2.26 TR:Q9S2J1 (EMBL:AL109732) (238 aa) fasta scores: E(): 4.3e-42, 55.55% id in 234 aa.


ensembl_gene_id: BP1651
symbol: BP1651
gene_biotype: protein_coding
description:
  Similar to Bacillus halodurans transcriptional regulator Bh2958 TR:Q9K8P5 (EMBL:AP001517) (215 aa) fasta scores: E(): 8e-09, 28.1% id in 185 aa, and to Pseudomonas fluorescens putative transcriptional regulator Pfi2 TR:Q9RFR4 (EMBL:AF173683) (207 aa) fasta scores: E(): 1.2e-07, 24.06% id in 187 aa.


ensembl_gene_id: BP1652
symbol: BP1652
gene_biotype: protein_coding
description:
  Putative oxidoreductase (Partial); Partial CDS, it lacks the N-terminal region. Similar to Pseudomonas putida putidaredoxin reductase camA SW:CAMA_PSEPU (P16640) (422 aa) fasta scores: E(): 5.1e-34, 40.98% id in 283 aa, and to Rhizobium meliloti putative oxidoreductase protein smc00914 TR:CAC45363 (EMBL:AL591785) (405 aa) fasta scores: E(): 6.1e-47, 50.5% id in 299 aa.


ensembl_gene_id: BP1654
symbol: wcbQ
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa.


ensembl_gene_id: BP1655
symbol: wcbP
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to Myxococcus xanthus hypothetical oxidoreductase in uraA 5'region SW:YURA_MYXXA (P25970) (258 aa) fasta scores: E(): 1.4e-15, 39.35% id in 216 aa, and to Burkholderia mallei WcbP TR:Q9AI32 (EMBL:AF285636) (262 aa) fasta scores: E(): 2.1e-33, 44.26% id in 253 aa.


ensembl_gene_id: BP1658
symbol: BP1658
gene_biotype: protein_coding
description:
  Probable two-component sensor histidine kinase; The C-terminal region of this CDS is Similar to Deinococcus radiodurans sensor histidine kinase Dr0577 TR:Q9RWT8 (EMBL:AE001916) (590 aa) fasta scores: E(): 1.4e-05, 31.27% id in 227 aa, and to Pseudomonas aeruginosa probable two-component sensor pa1979 TR:Q9I2C8 (EMBL:AE004624) (216 aa) fasta scores: E(): 1.6e-06, 32.38% id in 176 aa.


ensembl_gene_id: BP1659
symbol: BP1659
gene_biotype: protein_coding
description:
  Similar to Streptomyces reticuli response regulatory protein SenR TR:Q9RIM0 (EMBL:Y14336) (217 aa) fasta scores: E(): 1.8e-15, 34.52% id in 223 aa, and to Streptomyces coelicolor AbsA2 or Sce8.19 TR:Q53894 (EMBL:U51332) (222 aa) fasta scores: E(): 3.9e-16, 30.88% id in 204 aa.


ensembl_gene_id: BP1662
symbol: BP1662
gene_biotype: protein_coding
description:
  Putative DNA-binding protein; Similar to Vibrio cholerae hypothetical protein Vca0469 TR:Q9KMA5 (EMBL:AE004379) (104 aa) fasta scores: E(): 7.4e-05, 33.69% id in 92 aa, and to Agrobacterium tumefaciens Agr_c_3184p TR:AAK87504 (EMBL:AE008095) (95 aa) fasta scores: E(): 3.6e-05, 32.94% id in 85 aa.


ensembl_gene_id: BP1663
symbol: BP1663
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (partial); Partial CDS (lacking the N-terminal region). Similar to Vibrio cholerae hypothetical protein Vca0468 TR:Q9KMA6 (EMBL:AE004379) (110 aa) fasta scores: E(): 0.00013, 37.73% id in 53 aa, and to Rhizobium meliloti hypothetical protein Smc01995 TR:Q92MY0 (EMBL:AL591790) (128 aa) fasta scores: E(): 0.0066, 34.92% id in 63 aa.


ensembl_gene_id: BP1664
symbol: gst
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutathione S-transferase Gst or B1635 or Z2647 or Ecs2344 SW:GT_ECOLI (P39100) (201 aa) fasta scores: E(): 8.3e-17, 34.15% id in 202 aa, and to Rhizobium meliloti putative glutathione S-transferase protein TR:CAC45528 (EMBL:AL591785) (206 aa) fasta scores: E(): 3.8e-45, 57.71% id in 201 aa.


ensembl_gene_id: BP1665
symbol: tfdA
gene_biotype: protein_coding
description:
  Similar to Alcaligenes eutrophus alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase TfdA SW:TFDA_ALCEU (P10088) (287 aa) fasta scores: E(): 3.2e-37, 43.21% id in 280 aa, and to Alcaligenes denitrificans 2,4-d dioxygenase TfdA TR:Q9KX47 (EMBL:U32188) (287 aa) fasta scores: E(): 2.3e-34, 41.28% id in 281 aa.


ensembl_gene_id: BP1666
symbol: BP1666
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa2115 TR:Q9I200 (EMBL:AE004639) (317 aa) fasta scores: E(): 2.2e-09, 22.48% id in 298 aa, and to Rhizobium meliloti LysR family transcriptional regulator, probable Sma0557 TR:AAK64948 (EMBL:AE007221) (295 aa) fasta scores: E(): 3.3e-07, 26.15% id in 260 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1667
symbol: BP1667
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein Sma1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.3e-37, 36.66% id in 300 aa, and to Pseudomonas putida hypothetical 34.5 kDa protein in clcB-clcD intergenic region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 8.6e-37, 37.82% id in 312 aa.


ensembl_gene_id: BP1668
symbol: BP1668
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase Pa5524 TR:Q9HT49 (EMBL:AE004965) (260 aa) fasta scores: E(): 1.6e-22, 38.43% id in 255 aa, and to Streptomyces cinnamonensis monensin polyketide synthase putative ketoacyl reductase SW:DHKR_STRCM (P41177) (261 aa) fasta scores: E(): 7.4e-21, 36.92% id in 260 aa.


ensembl_gene_id: BP1669
symbol: lldA
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis lactate dehydrogenase LldA or Nmb1377 TR:Q51135 (EMBL:U58911) (390 aa) fasta scores: E(): 3.4e-45, 36.05% id in 380 aa, and to Pseudomonas aeruginosa L-lactate dehydrogenase LldA or Pa2382 TR:Q9I197 (EMBL:AE004664) (383 aa) fasta scores: E(): 4.7e-49, 38.48% id in 382 aa.


ensembl_gene_id: BP1670
symbol: BP1670
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to Burkholderia solanacearum conserved hypothetical protein Rsc1824 TR:CAD15526 (EMBL:AL646066) (319 aa) fasta scores: E(): 1.8e-19, 35.39% id in 308 aa.


ensembl_gene_id: BP1671
symbol: BP1671
gene_biotype: protein_coding
description:
  Probable short chain dehydrogenase; Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 1.2e-07, 27.23% id in 246 aa, and to Streptomyces coelicolor putative dehydrogenase/reductase Scah10.14C TR:Q9RKU3 (EMBL:AL132824) (258 aa) fasta scores: E(): 9.6e-08, 31.14% id in 244 aa.


ensembl_gene_id: BP1672
symbol: fabG-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 7.6e-21, 34.69% id in 245 aa, and to Agrobacterium tumefaciens Agr_l_2601p agr_l_2601 TR:AAK89866 (EMBL:AE008330) (246 aa) fasta scores: E(): 7.2e-29, 44.13% id in 247 aa.


ensembl_gene_id: BP1673
symbol: BP1673
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 1.9e-39, 38.8% id in 317 aa, and to Pseudomonas chlororaphis hypothetical 35.8 kDa protein TR:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta scores: E(): 2.9e-39, 37.85% id in 317 aa.


ensembl_gene_id: BP1674
symbol: BP1674
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa2206 TR:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: E(): 5.9e-19, 28.85% id in 305 aa, and to Burkholderia solanacearum probable transcriptional regulatory DNA-binding transcription regulator protein PcaQ TR:CAD15142 (EMBL:AL646064) (319 aa) fasta scores: E(): 2.1e-16, 34.82% id in 313 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1675
symbol: BP1675
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.8e-32, 34.47% id in 322 aa, and to Alcaligenes eutrophus hypothetical 35.7 kDa protein MacB TR:Q9RBG2 (EMBL:AF130250) (340 aa) fasta scores: E(): 3.3e-30, 35.87% id in 315 aa.


ensembl_gene_id: BP1678
symbol: BP1678
gene_biotype: protein_coding
description:
  Hypothetical protein (Pseudogene); There is ~100 bp deletion in pertussis and parapertussis and bronchiseptica.


ensembl_gene_id: BP1680
symbol: arsH
gene_biotype: protein_coding
description:
  Putative LysR-family transcriptional regulator (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. Similar to the C-terminal region of Burkholderia solanacearum conserved hypothetical protein Rsp1208 TR:CAD18359 (EMBL:AL646083) (449 aa) fasta scores: E(): 2.9, 35% id in 60 aa.


ensembl_gene_id: BP1683
symbol: BP1683
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Thiobacillus ferrooxidans ArsR-like protein TR:Q9L9D2 (EMBL:AF173880) (118 aa) fasta scores: E(): 1.3e-11, 45.09% id in 102 aa, and to Caulobacter crescentus transcriptional regulator, ArsR family Cc1505 TR:Q9A859 (EMBL:AE005825) (109 aa) fasta scores: E(): 2e-11, 42.2% id in 109 aa.


ensembl_gene_id: BP1685
symbol: BP1685
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); (G)6 in pertussis; (G)4 in parapertussis and bronchiseptica. There is also a large deletion in pertussis, relative to parapertussis and bronchiseptica, downstream of this position.


ensembl_gene_id: BP1686
symbol: BP1686
gene_biotype: protein_coding
description:
  Probable short-chain dehydrogenase; Similar to Pseudomonas abietaniphila DitG TR:Q9X4X1 (EMBL:AF119621) (244 aa) fasta scores: E(): 1.9e-35, 50.22% id in 227 aa, and to Rhizobium loti short-chain dehydrogenase/reductase family mlr5208 TR:Q98CC5 (EMBL:AP003006) (235 aa) fasta scores: E(): 7.2e-19, 37.11% id in 229 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: BP1687
symbol: BP1687
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Agrobacterium tumefaciens pca operon transcriptional activator PcaQ SW:PCAQ_AGRTU (P52668) (311 aa) fasta scores: E(): 9.2e-13, 27.55% id in 294 aa, and to Rhizobium meliloti putative transcriptional regulator protein Smb20123 TR:CAC48523 (EMBL:AL603642) (298 aa) fasta scores: E(): 1.4e-14, 29.43% id in 248 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1688
symbol: BP1688
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Drosophila melanogaster Cg13065 protein TR:Q9VV13 (EMBL:AE003528) (140 aa) fasta scores: E(): 2.2, 39.53% id in 86 aa, and to Streptomyces coelicolor hypothetical 9.1 kDa protein Sch22a.29 TR:Q9L0V4 (EMBL:AL159178) (89 aa) fasta scores: E(): 8.7, 36.5% id in 63 aa.


ensembl_gene_id: BP1691
symbol: phaA
gene_biotype: protein_coding
description:
  Putative exported protein (Pseudogene); PS00013 Prokaryotic membrane lipoprotein lipid attachment site.


ensembl_gene_id: BP1692
symbol: phaC
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti pH adaptation potassium efflux system C transmembrane protein PhaC TR:CAC47490 (EMBL:X93358) (115 aa) fasta scores: E(): 3e-27, 72.97% id in 111 aa, and to Rhodobacter capsulatus potential poly(3-hydroxyalkanoate) polymerase TR:O68035 (EMBL:AF010496) (114 aa) fasta scores: E(): 8.7e-31, 76.31% id in 114 aa.


ensembl_gene_id: BP1693
symbol: phaD
gene_biotype: protein_coding
description:
  Putative pH adaptation potassium efflux protein; Similar to Rhizobium meliloti PhaD protein TR:Q52981 (EMBL:X93358) (547 aa) fasta scores: E(): 6e-96, 52.33% id in 535 aa, and to Agrobacterium tumefaciens Agr_c_899p TR:AAK86324 (EMBL:AE007986) (548 aa) fasta scores: E(): 5.1e-94, 50.28% id in 533 aa.


ensembl_gene_id: BP1694
symbol: phaE
gene_biotype: protein_coding
description:
  Putative pH adaptation potassium efflux protein; Similar to Rhizobium meliloti PhaE protein TR:Q52982 (EMBL:X93358) (161 aa) fasta scores: E(): 1.9e-18, 39.26% id in 163 aa, and to Agrobacterium tumefaciens Agr_c_898p TR:AAK86323 (EMBL:AE007986) (162 aa) fasta scores: E(): 4.3e-21, 45.45% id in 154 aa.


ensembl_gene_id: BP1695
symbol: phaF
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti pH adaptation potassium efflux system protein F PhaF or PhaF1 or R02914 or Smc03183 SW:PHAF_RHIME (Q52983) (92 aa) fasta scores: E(): 4.3e-16, 54.34% id in 92 aa, and to Agrobacterium tumefaciens Agr_c_896p TR:AAK86322 (EMBL:AE007986) (93 aa) fasta scores: E(): 7.8e-17, 52.68% id in 93 aa.


ensembl_gene_id: BP1696
symbol: phaG
gene_biotype: protein_coding
description:
  Putative pH adaptation potassium efflux protein; Similar to Rhizobium meliloti PhaG protein TR:CAC47494 (EMBL:X93358) (121 aa) fasta scores: E(): 6.7e-11, 44.89% id in 98 aa, and to Rhodobacter capsulatus hypothetical 12.6 kDa protein TR:O68039 (EMBL:AF010496) (116 aa) fasta scores: E(): 9.4e-14, 48.98% id in 98 aa.


ensembl_gene_id: BP1699
symbol: BP1699
gene_biotype: protein_coding
description:
  Similar to Borrelia burgdorferi hypothetical protein Bb0007 SW:Y007_BORBU (O51040) (285 aa) fasta scores: E(): 7.4e-16, 26.31% id in 285 aa.


ensembl_gene_id: BP1700
symbol: cumB
gene_biotype: protein_coding
description:
  Putative zinc-binding hydrolase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: BP1701
symbol: ldcA-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli muramoyltetrapeptide carboxypeptidase LdcA or B1192 SW:LDCA_ECOLI (P76008) (304 aa) fasta scores: E(): 2.6e-36, 40% id in 300 aa, and to Neisseria meningitidis hypothetical protein Nma1819 or MccF TR:Q9JR41 (EMBL:AL162757) (394 aa) fasta scores: E(): 9.9e-35, 41.28% id in 281 aa.


ensembl_gene_id: BP1702
symbol: BP1702
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable enoyl-CoA hydratase/isomerase Pa2013 TR:Q9I298 (EMBL:AE004627) (265 aa) fasta scores: E(): 2.1e-37, 41.06% id in 263 aa, and to Caulobacter crescentus enoyl-CoA hydratase/isomerase family protein Cc2169 TR:Q9A6C5 (EMBL:AE005888) (262 aa) fasta scores: E(): 3.4e-38, 44.22% id in 251 aa.


ensembl_gene_id: BP1703
symbol: BP1703
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti putative transmembrane protein Smc04283 TR:CAC46625 (EMBL:AL591789) (579 aa) fasta scores: E(): 3.8e-49, 49.83% id in 610 aa.


ensembl_gene_id: BP1704
symbol: BP1704
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein Smc04287 TR:CAC46626 (EMBL:AL591789) (233 aa) fasta scores: E(): 5e-40, 52.63% id in 209 aa, and to Rhizobium loti Mll5171 protein TR:Q98CF5 (EMBL:AP003005) (194 aa) fasta scores: E(): 4.3e-14, 40.24% id in 164 aa.


ensembl_gene_id: BP1706
symbol: BP1706
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum probable ATP-binding ABC transporter protein Rsc1453 TR:CAD15155 (EMBL:AL646064) (540 aa) fasta scores: E(): 1.2e-125, 72.5% id in 542 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YbiT or B0820 or Z1042 or Ecs0897 SW:YBIT_ECOLI (P75790) (530 aa) fasta scores: E(): 5e-116, 67.41% id in 534 aa.


ensembl_gene_id: BP1707
symbol: BP1707
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative ABC-transport protein, ATP-binding component Sc8g12.21 TR:Q9KYY4 (EMBL:AL355753) (270 aa) fasta scores: E(): 4.4e-32, 49.52% id in 212 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa2294 TR:Q9I1I1 (EMBL:AE004655) (284 aa) fasta scores: E(): 2.7e-30, 45.65% id in 230 aa.


ensembl_gene_id: BP1708
symbol: BP1708
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Methanobacterium bryantii copper response extracellular protein TR:Q48929 (EMBL:U40213) (353 aa) fasta scores: E(): 1.3e-14, 29.32% id in 266 aa, and to Deinococcus radiodurans ABC transporter, periplasmic substrate-binding protein, putative dr1277 TR:Q9RUV4 (EMBL:AE001975) (325 aa) fasta scores: E(): 6.4e-14, 29.76% id in 299 aa.


ensembl_gene_id: BP1709
symbol: BP1709
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable permease of ABC transporter Pa3448 TR:Q9HYF8 (EMBL:AE004765) (274 aa) fasta scores: E(): 2.7e-18, 35.4% id in 257 aa, and to Streptomyces coelicolor putative ABC-transport protein, membrane component sc8g12.20 TR:Q9KYY5 (EMBL:AL355753) (267 aa) fasta scores: E(): 4e-18, 29.96% id in 257 aa.


ensembl_gene_id: BP1712
symbol: BP1712
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein Smc01701 TR:CAC41902 (EMBL:AL591783) (194 aa) fasta scores: E(): 1.3e-36, 54.01% id in 187 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0168 TR:Q9I6W4 (EMBL:AE004454) (196 aa) fasta scores: E(): 4.1e-35, 52.66% id in 188 aa.


ensembl_gene_id: BP1713
symbol: trxC
gene_biotype: protein_coding
description:
  Thioredoxin 2; Similar to Escherichia coli thioredoxin 2 TrxC or B2582 or Z3867 or Ecs3448 SW:THI2_ECOLI (P33636) (139 aa) fasta scores: E(): 2.2e-13, 51.28% id in 78 aa, and to Streptomyces coelicolor thioredoxin TrxA2 TR:Q9RD25 (EMBL:AL133422) (134 aa) fasta scores: E(): 7.1e-23, 49.23% id in 130 aa. Also similar to BP1263, 39.000% identity in 100 aa overlap; Belongs to the thioredoxin family.


ensembl_gene_id: BP1715
symbol: BP1715
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); (GC)2 in pertussis; (GC)3(G) in parapertussis and bronchiseptica.


ensembl_gene_id: BP1716
symbol: gcp
gene_biotype: protein_coding
description:
  Probable glycoprotease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: BP1718
symbol: plsY
gene_biotype: protein_coding
description:
  Putative membrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: BP1719
symbol: surE
gene_biotype: protein_coding
description:
  Stationary-phase survival protein; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: BP1720
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: BP1721
symbol: BP1721
gene_biotype: protein_coding
description:
  Putative peptidase; Similar to Escherichia coli lipoprotein NlpD precursor NlpD or B2742 SW:NLPD_ECOLI (P33648) (379 aa) fasta scores: E(): 2.2e-18, 39.39% id in 264 aa, and to Rhodocyclus gelatinosus NlpD protein nlpD TR:Q9JP90 (EMBL:AB034704) (314 aa) fasta scores: E(): 2.5e-29, 43.77% id in 297 aa.


ensembl_gene_id: BP1722
symbol: BP1722
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nma1628 TR:Q9JTU6 (EMBL:AL162756) (264 aa) fasta scores: E(): 6.4e-60, 55.89% id in 263 aa, and to Campylobacter jejuni hypothetical protein Cj1132C TR:Q9PNG2 (EMBL:AL139077) (264 aa) fasta scores: E(): 2.1e-26, 35.56% id in 239 aa.


ensembl_gene_id: BP1723
symbol: BP1723
gene_biotype: protein_coding
description:
  Putative exported protein; Weakly similar to Epiphyas postvittana apolipophorin-iii-like protein TR:Q9GPN5 (EMBL:AF314181) (186 aa) fasta scores: E(): 5.3, 22.89% id in 166 aa.


ensembl_gene_id: BP1724
symbol: BP1724
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Ralstonia solanacearum probable signal peptide protein Rsc0341 TR:CAD13869 (EMBL:AL646058) (268 aa) fasta scores: E(): 3.5e-18, 37.9% id in 277 aa, and to Caulobacter crescentus hypothetical protein Cc2658 TR:Q9A513 (EMBL:AE005933) (230 aa) fasta scores: E(): 2.5e-11, 34.65% id in 202 aa.


ensembl_gene_id: BP1725
symbol: rlmD
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.


ensembl_gene_id: BP1726
symbol: BP1726
gene_biotype: protein_coding
description:
  MerR-family transcriptional regulator; Similar to Rhizobium meliloti heavy metal dependent transcription regulator HmrR SW:HMRR_RHIME (Q9X5X4) (147 aa) fasta scores: E(): 1.2e-35, 71.53% id in 130 aa, and to Agrobacterium tumefaciens strC58 Agr_c_1709p TR:AAK86743 (EMBL:AE008024) (140 aa) fasta scores: E(): 3.7e-29, 60.3% id in 131 aa. Also similar to BP3173, 58.333% identity in 84 aa overlap.


ensembl_gene_id: BP1727
symbol: BP1727
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas syringae OrfH protein TR:Q9KWM7 (EMBL:AB033420) (65 aa) fasta scores: E(): 2.9e-05, 43.54% id in 62 aa, and to Agrobacterium tumefaciens strC58 Agr_c_2220p TR:AAK87005 (EMBL:AE008049) (84 aa) fasta scores: E(): 2.5e-07, 47.61% id in 63 aa.


ensembl_gene_id: BP1728
symbol: BP1728
gene_biotype: protein_coding
description:
  Putative glutaredoxin; Similar to Vibrio cholerae peroxiredoxin family protein/glutaredoxin Vc2637 TR:Q9KNU3 (EMBL:AE004330) (247 aa) fasta scores: E(): 3.4e-61, 65.14% id in 241 aa, and to Neisseria meningitidis putative redoxin Nma1141 or Nmb0946 TR:Q9JQS4 (EMBL:AL162755) (245 aa) fasta scores: E(): 4e-59, 64.31% id in 241 aa.


ensembl_gene_id: BP1729
symbol: BP1729
gene_biotype: protein_coding
description:
  Putative pyridine nucleotide-disulfide oxidoreductase; Similar to Halobacterium volcanii dihydrolipoamide dehydrogenase Lpd SW:DLDH_HALVO (Q04829) (474 aa) fasta scores: E(): 1.4e-30, 32.27% id in 471 aa, and to Vibrio cholerae pyridine nucleotide-disulfide oxidoreductase, class I Vc2638 TR:Q9KNU2 (EMBL:AE004330) (484 aa) fasta scores: E(): 1e-102, 60.17% id in 467 aa.


ensembl_gene_id: BP1731
symbol: ugpQ
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ or B3449 SW:UGPQ_ECOLI (P10908) (247 aa) fasta scores: E(): 4.5e-40, 47.73% id in 243 aa, and to Alcaligenes eutrophus Orf1 protein TR:Q44028 (EMBL:X91877) (248 aa) fasta scores: E(): 2e-53, 58.5% id in 241 aa.


ensembl_gene_id: BP1732
symbol: ppiD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase D PpiD or B0441 SW:PPID_ECOLI (P77241) (623 aa) fasta scores: E(): 2.9e-17, 26.07% id in 652 aa, and to Pseudomonas aeruginosa peptidyl-prolyl cis-trans isomerase D PpiD or Pa1805 TR:Q9I2T8 (EMBL:AE004606) (621 aa) fasta scores: E(): 6.5e-30, 31.49% id in 651 aa.


ensembl_gene_id: BP1733
symbol: tesA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli acyl-CoA thioesterase I precursor TesA or ApeA or PldC or B0494 SW:TESA_ECOLI (P29679) (208 aa) fasta scores: E(): 9.7e-24, 42.07% id in 183 aa, and to Pseudomonas aeruginosa acyl-CoA thioesterase I precursor TesA or Pa2856 TR:Q9HZY8 (EMBL:AE004712) (201 aa) fasta scores: E(): 2.1e-36, 56.28% id in 183 aa.


ensembl_gene_id: BP1736
symbol: BP1736
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4739 TR:Q9HV60 (EMBL:AE004887) (114 aa) fasta scores: E(): 2.6e-06, 40.18% id in 107 aa, and to the N-terminal region of Escherichia coli osmotically inducible protein Y precursor OsmY or B4376 SW:OSMY_ECOLI (P27291) (201 aa) fasta scores: E(): 5.6e-06, 33.33% id in 120 aa.


ensembl_gene_id: BP1737
symbol: BP1737
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium loti Msr3702 protein TR:Q98FM7 (EMBL:AP003002) (54 aa) fasta scores: E(): 1.3e-08, 60.37% id in 53 aa, and to Pseudomonas aeruginosa hypothetical protein Pa5482 TR:Q9HT88 (EMBL:AE004961) (53 aa) fasta scores: E(): 4.5e-07, 63.46% id in 52 aa.


ensembl_gene_id: BP1738
symbol: BP1738
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa4738 TR:Q9HV61 (EMBL:AE004887) (65 aa) fasta scores: E(): 1.5e-13, 60.93% id in 64 aa, and to Escherichia coli protein YjbJ or B4045 or Z5644 or ecs5028 SW:YJBJ_ECOLI (P32691) (69 aa) fasta scores: E(): 2.7e-10, 52.3% id in 65 aa; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: BP1739
symbol: cphA
gene_biotype: protein_coding
description:
  Cyanphycin synthetase; Similar to Synechococcus elongatus cyanphycin synthetase CphA TR:Q9F2I7 (EMBL:AJ288949) (896 aa) fasta scores: E(): 5.9e-113, 41.6% id in 870 aa, and to Cyanothece cyanophycin synthetase CphA TR:Q9KGY4 (EMBL:AF279247) (872 aa) fasta scores: E(): 4.1e-110, 40.25% id in 872 aa. Also similar to the adjacent CDS, BP1740, 44.509% identity (46.921% ungapped) in 856 aa overlap; Belongs to the MurCDEF family.


ensembl_gene_id: BP1740
symbol: cphA-2
gene_biotype: protein_coding
description:
  Similar to Cyanothece cyanophycin synthetase CphA TR:Q9KGY4 (EMBL:AF279247) (872 aa) fasta scores: E(): 1.9e-49, 37.54% id in 863 aa, and to Synechocystis sp cyanophycin synthetase CphA or Slr2002 SW:CPHA_SYNY3 (P73833) (873 aa) fasta scores: E(): 2.4e-49, 37.98% id in 874 aa. Also similar to the adjacent CDS, BP1739, 44.509% identity (46.921% ungapped) in 856 aa overlap.


ensembl_gene_id: BP1743
symbol: BP1743
gene_biotype: protein_coding
description:
  ScanRegExp hit to PS00211, ABC transporters family signature. Confirmed by InterPro eMOTIF pattern match.


ensembl_gene_id: BP1744
symbol: BP1744
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa3230 TR:Q9HZ10 (EMBL:AE004746) (374 aa) fasta scores: E(): 1e-64, 46.88% id in 369 aa, and to Ralstonia solanacearum conserved hypothetical protein TR:CAD16055 (EMBL:AL646069) (408 aa) fasta scores: E(): 1.8e-74, 51.44% id in 381 aa.


ensembl_gene_id: BP1745
symbol: BP1745
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Neisseria meningitidis hypothetical protein Nmb0621 TR:Q9K0H9 (EMBL:AE002417) (275 aa) fasta scores: E(): 6.4e-40, 53.94% id in 241 aa, and to Pasteurella multocida hypothetical protein Pm0569 TR:Q9CN70 (EMBL:AE006092) (287 aa) fasta scores: E(): 7.4e-37, 52.83% id in 229 aa.


ensembl_gene_id: BP1746
symbol: BP1746
gene_biotype: protein_coding
description:
  Putative peptidoglycan-binding protein; Similar to Pseudomonas aeruginosa probable transglycolase Pa1171 TR:Q9I4G6 (EMBL:AE004547) (398 aa) fasta scores: E(): 2.8e-92, 62.46% id in 389 aa, and to Caulobacter crescentus peptidoglycan-binding protein, putative Cc3322 TR:Q9A382 (EMBL:AE005994) (433 aa) fasta scores: E(): 1.6e-49, 41.23% id in 388 aa.


ensembl_gene_id: BP1747
symbol: BP1747
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa3796 TR:Q9HXK1 (EMBL:AE004798) (195 aa) fasta scores: E(): 9.9e-12, 41.61% id in 149 aa, and to Escherichia coli hypothetical protein YidB or B3698 SW:YIDB_ECOLI (P09996) (132 aa) fasta scores: E(): 5.3e-05, 31.72% id in 145 aa.


ensembl_gene_id: BP1749
symbol: BP1749
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti transcriptional regulator Mll7935 TR:Q984M5 (EMBL:AP003013) (159 aa) fasta scores: E(): 1.9e-15, 36.42% id in 151 aa, and to Agrobacterium tumefaciens StrC58 Agr_c_1339p TR:AAK86548 (EMBL:AE008008) (150 aa) fasta scores: E(): 8e-23, 45.27% id in 148 aa.


ensembl_gene_id: BP1750
symbol: BP1750
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Agrobacterium tumefaciens strC58 Agr_c_1338p TR:AAK86547 (EMBL:AE008008) (320 aa) fasta scores: E(): 1.6e-32, 33.44% id in 296 aa, and to Bacillus halodurans Bh3588 protein TR:Q9K6Y6 (EMBL:AP001519) (317 aa) fasta scores: E(): 1.1e-14, 26.35% id in 296 aa.


ensembl_gene_id: BP1751
symbol: dfp
gene_biotype: protein_coding
description:
  DNA/pantothenate metabolism flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: BP1752
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: BP1753
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: BP1754
symbol: ribF
gene_biotype: protein_coding
description:
  Similar to Escherichia coli riboflavin biosynthesis protein RibF or B0025 or Z0029 or Ecs0028 SW:RIBF_ECOLI (P08391) (313 aa) fasta scores: E(): 4e-48, 47.49% id in 299 aa, and to Pseudomonas aeruginosa riboflavin kinase/FAD synthase RibF or pa4561 TR:Q9HVM3 (EMBL:AE004869) (312 aa) fasta scores: E(): 2.6e-47, 48.48% id in 297 aa.


ensembl_gene_id: BP1756
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase (Pseudogene); There is a ~140 bp deletion in pertussis, relative to parapertussis and bronchiseptica, following this codon; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: BP1757A
symbol: BP1757A
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to the N-terminal region of Escherichia coli PilL TR:AAL05516 (EMBL:AF399919) (357 aa) fasta scores: E(): 3.8, 33.01% id in 106 aa.


ensembl_gene_id: BP1758
symbol: BP1758
gene_biotype: protein_coding
description:
  Probable fatty acid desaturase; Similar to Azotobacter vinelandii stearoyl-CoA desaturase TR:Q59162 (EMBL:U37517) (367 aa) fasta scores: E(): 7.8e-68, 47.7% id in 348 aa, and to Pseudomonas aeruginosa probable fatty acid desaturase pa0286 TR:Q9I6K4 (EMBL:AE004466) (392 aa) fasta scores: E(): 2.5e-79, 49.23% id in 392 aa.


ensembl_gene_id: BP1759
symbol: uvrD
gene_biotype: protein_coding
description:
  DNA helicase II; Similar to Escherichia coli DNA helicase II UvrD or MutU or PdeB or Rad or RecL or B3813 SW:UVRD_ECOLI (P03018) (720 aa) fasta scores: E(): 1.3e-94, 46.5% id in 772 aa, and to Neisseria meningitidis DNA helicase II Nmb0232 TR:Q9K1D0 (EMBL:AE002380) (735 aa) fasta scores: E(): 1.2e-108, 53.78% id in 766 aa.


ensembl_gene_id: BP1760
symbol: BP1760
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa probable siderophore receptor Pa1365 TR:Q9I3X9 (EMBL:AE004565) (813 aa) fasta scores: E(): 1.1e-08, 23.6% id in 771 aa, and to Escherichia coli hypothetical protein Yddb or B1495 SW:YDDB_ECOLI (P31827) (790 aa) fasta scores: E(): 3.1e-72, 32.65% id in 781 aa.


ensembl_gene_id: BP1761
symbol: BP1761
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YheS or B3352 or Z4713 or Ecs4203 SW:YHES_ECOLI (P45535) (637 aa) fasta scores: E(): 2.4e-90, 50.31% id in 632 aa, and to Pasteurella multocida hypothetical protein Pm1582 TR:Q9CKM9 (EMBL:AE006195) (640 aa) fasta scores: E(): 1.6e-89, 49.68% id in 638 aa.


ensembl_gene_id: BP1762
symbol: prmB
gene_biotype: protein_coding
description:
  Putative adenine-specific methylase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.


ensembl_gene_id: BP1763
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: BP1764
symbol: dapD
gene_biotype: protein_coding
description:
  Identical to the previously sequenced Bordetella pertussis 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD SW:DAPD_BORPE (Q9ZEX2) (273 aa) fasta scores: E(): 2.3e-107, 100% id in 273 aa, and similar to Escherichia coli 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD or B0166 SW:DAPD_ECOLI (P03948) (274 aa) fasta scores: E(): 3.4e-76, 72.01% id in 268 aa; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: BP1767
symbol: phg
gene_biotype: protein_coding
description:
  Autotransporter; Identical to the previously sequenced Bordetella pertussis Phg protein TR:Q9Z5R3 (EMBL:AJ009835) (418 aa) fasta scores: E(): 1.6e-154, 100% id in 418 aa.


ensembl_gene_id: BP1770
symbol: cspA-2
gene_biotype: protein_coding
description:
  Cold shock-like protein; Identical to the previously sequenced Bordetella pertussis cold shock-like protein CspA SW:CSPA_BORPE (Q9Z5R4) (67 aa) fasta scores: E(): 3.4e-26, 100% id in 67 aa, and similar to Ralstonia solanacearum probable cold shock-like CspC transcription regulator protein CspC TR:CAD16944 (EMBL:AL646074) (67 aa) fasta scores: E(): 5.5e-17, 67.69% id in 65 aa.


ensembl_gene_id: BP1771
symbol: BP1771
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hypothetical protein Cc2122 TR:Q9A6H2 (EMBL:AE005885) (187 aa) fasta scores: E(): 1.9e-37, 54.74% id in 179 aa, and to Rhizobium meliloti hypothetical protein Smc00282 TR:CAC46289 (EMBL:AL591788) (221 aa) fasta scores: E(): 5.3e-40, 54.25% id in 188 aa.


ensembl_gene_id: BP1772
symbol: cspA-3
gene_biotype: protein_coding
description:
  Cold shock-like protein; Similar to Bordetella pertussis cold shock-like protein CspA SW:CSPA_BORPE (Q9Z5R4) (67 aa) fasta scores: E(): 1.2e-15, 71.66% id in 60 aa, and to Escherichia coli cold shock protein CspA or B3556 or Z4981 or Ecs4441 or Sty4153 SW:CSPA_ECOLI (P15277) (69 aa) fasta scores: E(): 6.2e-14, 68.42% id in 57 aa.


ensembl_gene_id: BP1773
symbol: BP1773
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Bradyrhizobium japonicum PipA TR:Q9L8L2 (EMBL:AF200320) (193 aa) fasta scores: E(): 1.6e-48, 76.16% id in 172 aa, and to Pasteurella multocida hypothetical protein Pm1258 SW:YC58_PASMU (P57929) (192 aa) fasta scores: E(): 4.5e-36, 56.52% id in 184 aa.


ensembl_gene_id: BP1774
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: BP1775
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: BP1776
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: BP1777
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: BP1778
symbol: BP1778
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1826 TR:Q9I2R9 (EMBL:AE004609) (301 aa) fasta scores: E(): 5e-36, 43.19% id in 294 aa, and to Ralstonia solanacearum probable transcription regulator protein Rsp1326 TR:CAD18477 (EMBL:AL646084) (306 aa) fasta scores: E(): 1.2e-27, 38.17% id in 296 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1779
symbol: BP1779
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa0446 TR:Q9I672 (EMBL:AE004482) (407 aa) fasta scores: E(): 7.6e-94, 56.71% id in 402 aa, and to Acinetobacter spNCIMB9871 L-carnitine dehydrogenase-like protein Orf17 TR:BAB61747 (EMBL:AB026669) (405 aa) fasta scores: E(): 4.3e-82, 51.11% id in 405 aa. Also similar to BP0143 (68.059% identity in 407 aa overlap), and BP3309 (57.644% identity in 399 aa overlap); Belongs to the CoA-transferase III family.


ensembl_gene_id: BP1780
symbol: BP1780
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni Orf4 protein TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 6.8e-40, 39.93% id in 313 aa, and to Variovorax paradoxus, and 2,4-diphenoxyacetic acid gene cluster TR:AAK81675 (EMBL:AB028643) (337 aa) fasta scores: E(): 1.7e-32, 35.57% id in 312 aa.


ensembl_gene_id: BP1781
symbol: BP1781
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium leguminosarum nodulation protein N NodN SW:NODN_RHILV (P08634) (161 aa) fasta scores: E(): 4e-18, 43.84% id in 130 aa, and to Mycobacterium tuberculosis hypothetical 16.0 kDa protein rv0130 or mtci5.04 TR:P96807 (EMBL:Z92770) (151 aa) fasta scores: E(): 6.5e-20, 48.43% id in 128 aa.


ensembl_gene_id: BP1782
symbol: BP1782
gene_biotype: protein_coding
description:
  Similar to Escherichia coli probable enoyl-CoA hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) fasta scores: E(): 4e-24, 38.79% id in 250 aa, and to Caulobacter crescentus enoyl-CoA hydratase/isomerase family protein cc2575 TR:Q9A582 (EMBL:AE005925) (265 aa) fasta scores: E(): 4.2e-25, 35.84% id in 265 aa.


ensembl_gene_id: BP1783
symbol: BP1783
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Pyrococcus abyssi AcaC protein or Pab0908 TR:Q9UYY6 (EMBL:AJ248287) (134 aa) fasta scores: E(): 1.3e-05, 29.83% id in 124 aa, and to Archaeoglobus fulgidus conserved hypothetical protein Af1292 TR:O28977 (EMBL:AE001015) (136 aa) fasta scores: E(): 3.8e-05, 29.66% id in 118 aa.


ensembl_gene_id: BP1784
symbol: BP1784
gene_biotype: protein_coding
description:
  Putative thiolase; Similar to Pseudomonas aeruginosa hypothetical protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 7.5e-88, 60.31% id in 378 aa, and to Methanothermobacter thermautotrophicus lipid-transfer protein Mth793 TR:O26884 (EMBL:AE000857) (383 aa) fasta scores: E(): 8e-31, 32.03% id in 384 aa.


ensembl_gene_id: BP1785
symbol: fabG-3
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 3.3e-24, 36.69% id in 248 aa, and to Thermotoga maritima 3-oxoacyl-[acyl-carrier protein] reductase FabG or Tm1724 SW:FABG_THEMA (Q9X248) (246 aa) fasta scores: E(): 2.2e-27, 41.5% id in 253 aa.


ensembl_gene_id: BP1789
symbol: pcaJ
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida 3-oxoadipate CoA-transferase subunit B PcaJ SW:PCAJ_PSEPU (Q01104) (212 aa) fasta scores: E(): 8.3e-38, 52.45% id in 204 aa, and to Caulobacter crescentus 3-oxoadipate CoA-transferase, beta subunit Cc0207 TR:Q9ABM0 (EMBL:AE005695) (213 aa) fasta scores: E(): 8e-36, 50.96% id in 208 aa. Also similar to BP222 (50.472% identity in 212 aa overlap), and to BP2400 (46.667% identity in 210 aa overlap).


ensembl_gene_id: BP1794
symbol: lexA
gene_biotype: protein_coding
description:
  LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: BP1795
symbol: tyrB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli aromatic-amino-acid aminotransferase TyrB or B4054 SW:TYRB_ECOLI (P04693) (397 aa) fasta scores: E(): 6.9e-78, 52.51% id in 398 aa, and to Pseudomonas aeruginosa aspartate aminotransferase AspC or Pa3139 SW:AAT_PSEAE (P72173) (398 aa) fasta scores: E(): 2e-105, 68.76% id in 397 aa. Also similar to BP2858, 49.622% identity (49.622% ungapped) in 397 aa overlap.


ensembl_gene_id: BP1796
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: BP1797
symbol: ptpA
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor low molecular weight protein-tyrosine-phosphatase PtpA or Scq11.04C SW:PTPA_STRCO (P53433) (164 aa) fasta scores: E(): 2.9e-20, 45.28% id in 159 aa, and to Pseudomonas aeruginosa phosphotyrosine protein phosphatase Pt or Pa2978 TR:Q9HZM6 (EMBL:AE004723) (154 aa) fasta scores: E(): 6.6e-27, 51.29% id in 154 aa.


ensembl_gene_id: BP1798
symbol: BP1798
gene_biotype: protein_coding
description:
  Putative DNA-binding protein; Similar to Ralstonia solanacearum conserved hypothetical protein Rsc1018 TR:CAD14720 (EMBL:AL646062) (193 aa) fasta scores: E(): 9.9e-42, 70.58% id in 170 aa, and to Neisseria meningitidis hypothetical protein Nma1593/Nmb1378 precursor Nma1593 or Nmb1378 SW:YF93_NEIMA (Q51134) (148 aa) fasta scores: E(): 6.3e-28, 60.87% id in 138 aa.


ensembl_gene_id: BP1799
symbol: iscS
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.


ensembl_gene_id: BP1800
symbol: iscU
gene_biotype: protein_coding
description:
  [Fe-S] cluster formation/repair protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.


ensembl_gene_id: BP1801
symbol: iscA
gene_biotype: protein_coding
description:
  [Fe-S] cluster formation/repair protein; Similar to Azotobacter vinelandii IscA TR:O31271 (EMBL:AF010139) (107 aa) fasta scores: E(): 1.5e-28, 68.22% id in 107 aa, and to Pseudomonas aeruginosa probable iron-binding protein isca isca or pa3812 TR:Q9HXJ0 (EMBL:AE004799) (107 aa) fasta scores: E(): 1.5e-29, 71.02% id in 107 aa. Also similar to BP2958, 39.623% identity (40.000% ungapped) in 106 aa overlap; Belongs to the HesB/IscA family.


ensembl_gene_id: BP1802
symbol: hscB
gene_biotype: protein_coding
description:
  Chaperone protein; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family.


ensembl_gene_id: BP1803
symbol: hscA
gene_biotype: protein_coding
description:
  Chaperone protein; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.


ensembl_gene_id: BP1804
symbol: fdx
gene_biotype: protein_coding
description:
  Ferredoxin, 2Fe-2S; Similar to Escherichia coli ferredoxin, 2Fe-2S Fdx or B2525 or Z3792 or Ecs3391 TR:AAG57639 (EMBL:M88654) (111 aa) fasta scores: E(): 1.5e-28, 62.5% id in 112 aa, and to Neisseria meningitidis putative ferredoxin Fdx or Nma1344 or Nmb1172 TR:Q9JQT7 (EMBL:AL162755) (113 aa) fasta scores: E(): 7.3e-33, 67.25% id in 113 aa. Also similar to BP3174, 63.964% identity (64.545% ungapped) in 111 aa overlap.


ensembl_gene_id: BP1805
symbol: BP1805
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Azotobacter vinelandii hypothetical 7.9 kDa protein TR:O69223 (EMBL:AF010139) (68 aa) fasta scores: E(): 1.3e-14, 62.5% id in 64 aa, and to Neisseria meningitidis hypothetical protein Nma1347 or Nmb1175 TR:Q9JR02 (EMBL:AL162755) (65 aa) fasta scores: E(): 9.5e-14, 60% id in 65 aa.


ensembl_gene_id: BP1808
symbol: paaG
gene_biotype: protein_coding
description:
  Similar to Escherichia coli probable enoyl-CoA hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) fasta scores: E(): 2.3e-24, 38.79% id in 250 aa, and to Rhizobium meliloti putative enoyl-CoA hydratase protein TR:Q92TG7 (EMBL:AL603647) (263 aa) fasta scores: E(): 7.3e-25, 37.73% id in 265 aa; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: BP1812
symbol: kdgT
gene_biotype: protein_coding
description:
  2-keto-3-deoxygluconate permease (Pseudogene); (T)2 in pertussis; (T)1 in parapertussis and bronchiseptica.


ensembl_gene_id: BP1813
symbol: pdxA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli pyridoxal phosphate biosynthetic protein PdxA or B0052 SW:PDXA_ECOLI (P19624) (329 aa) fasta scores: E(): 1.2e-18, 31.7% id in 287 aa, and to Caulobacter crescentus pyridoxal phosphate biosynthetic protein PdxA Cc1686 TR:Q9A7N4 (EMBL:AE005843) (333 aa) fasta scores: E(): 1.1e-26, 36.33% id in 333 aa. Also similar to BP2789, 46.233% identity (49.451% ungapped) in 292 aa overlap.


ensembl_gene_id: BP1814
symbol: BP1814
gene_biotype: protein_coding
description:
  Probable GntR-family transcriptional regulator; Similar to Rhizobium meliloti putative transcription regulator protein Smc02340 TR:CAC47147 (EMBL:AL591791) (244 aa) fasta scores: E(): 3.8e-18, 33.47% id in 239 aa, and to Deinococcus radiodurans transcriptional regulator, GntR family Dra0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 3.8e-17, 37.7% id in 244 aa.


ensembl_gene_id: BP1815
symbol: BP1815
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein Smc02631 TR:CAC45671 (EMBL:AL591786) (283 aa) fasta scores: E(): 1e-13, 36.45% id in 288 aa, and to Streptomyces coelicolor conserved hypothetical protein 2 Scd46.31C TR:Q9FCF3 (EMBL:AL391406) (294 aa) fasta scores: E(): 4.9e-13, 34.89% id in 298 aa.


ensembl_gene_id: BP1816
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: BP1817
symbol: ascD
gene_biotype: protein_coding
description:
  Similar to Yersinia pestis and Y. pseudotuberculosis CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase AscD or RfbI or Ypo3116 SW:ASCD_YERPE (P37911) (328 aa) fasta scores: E(): 1.1e-37, 42.85% id in 336 aa, and to Ralstonia solanacearum putative reductase oxidoreductase protein Rsc2434 TR:CAD16141 (EMBL:AL646070) (349 aa) fasta scores: E(): 2.8e-86, 61.2% id in 348 aa.


ensembl_gene_id: BP1818
symbol: dadA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli D-amino acid dehydrogenase small subunit DadA or DadR or B1189 or Z1952 or Ecs1684 SW:DADA_ECOLI (P29011) (432 aa) fasta scores: E(): 4.2e-68, 45.14% id in 412 aa, and to Salmonella typhimurium LT2 D-amino acid dehydrogenase subunit DadA TR:AAL20718 (EMBL:AE008780) (432 aa) fasta scores: E(): 3.7e-68, 44.63% id in 410 aa. Also similar to BP2634, 42.079% identity in 404 aa overlap.


ensembl_gene_id: BP1819
symbol: ugpB-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glycerol-3-phosphate-binding periplasmic protein precursor UgpB or B3453 or Z4822 or Ecs4299 SW:UGPB_ECOLI (P10904) (438 aa) fasta scores: E(): 5.3e-42, 30.76% id in 429 aa, and to Yersinia pestis glycerol-3-phosphate-binding periplasmic protein UgpB TR:CAC93263 (EMBL:AJ414159) (439 aa) fasta scores: E(): 1.7e-43, 32.54% id in 424 aa.


ensembl_gene_id: BP1820
symbol: BP1820
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1998 TR:Q9I2B1 (EMBL:AE004626) (306 aa) fasta scores: E(): 4.7e-30, 36.3% id in 314 aa, and to Rhizobium loti transcriptional regulator Mlr6981 TR:Q987N6 (EMBL:AP003010) (299 aa) fasta scores: E(): 1.1e-28, 36.23% id in 287 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1822
symbol: BP1822
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); Stop codon in pertussis, parapertussis and bronchiseptica. According to Fasta hits there is no stop codon but a frameshift.


ensembl_gene_id: BP1823
symbol: BP1823
gene_biotype: protein_coding
description:
  Similar to Rhizobium sp probable peptide ABC transporter periplasmic binding protein Y4tO precursor y4tO SW:Y4TO_RHISN (P55669) (531 aa) fasta scores: E(): 2e-70, 39.92% id in 521 aa, and to Bradyrhizobium japonicum putative ABC transporter TR:Q9RH65 (EMBL:AF065159) (516 aa) fasta scores: E(): 1.5e-64, 38.35% id in 524 aa.


ensembl_gene_id: BP1824
symbol: BP1824
gene_biotype: protein_coding
description:
  Probable inner membrane component of binding-protein-dependent transport system; Similar to Rhizobium sp probable peptide ABC transporter permease protein Y4tP SW:Y4TP_RHISN (Q53191) (313 aa) fasta scores: E(): 7e-57, 48.89% id in 317 aa, and to Rhizobium loti ABC transporter, permease protein Mlr6289 TR:Q989T3 (EMBL:AP003008) (314 aa) fasta scores: E(): 9.3e-54, 45.36% id in 313 aa.


ensembl_gene_id: BP1825
symbol: BP1825
gene_biotype: protein_coding
description:
  Probable probable inner membrane component of binding-protein-dependent transport system; Similar to Rhizobium sp probable peptide ABC transporter permease protein Y4tQ SW:Y4TQ_RHISN (Q53192) (291 aa) fasta scores: E(): 1e-49, 52.96% id in 270 aa, and to Rhizobium loti ABC transporter, permease protein Mlr6290 TR:Q989T2 (EMBL:AP003008) (280 aa) fasta scores: E(): 5.1e-46, 49.8% id in 261 aa.


ensembl_gene_id: BP1826
symbol: BP1826
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti probable ABC transporter, ATP-binding protein Sma1434 TR:AAK65441 (EMBL:AE007265) (550 aa) fasta scores: E(): 4.3e-80, 48.08% id in 549 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa2061 TR:Q9I254 (EMBL:AE004632) (536 aa) fasta scores: E(): 1.5e-76, 49.24% id in 526 aa.


ensembl_gene_id: BP1827
symbol: BP1827
gene_biotype: protein_coding
description:
  Putative amidase; Similar to Pseudomonas putida amidase SW:AMID_PSEPU (O69768) (466 aa) fasta scores: E(): 2e-26, 32.39% id in 460 aa, and to Rhizobium meliloti putative amidase protein Smc02881 TR:CAC41593 (EMBL:AL591782) (453 aa) fasta scores: E(): 2.4e-38, 35.57% id in 447 aa; Belongs to the amidase family.


ensembl_gene_id: BP1829
symbol: BP1829
gene_biotype: protein_coding
description:
  Putative lipoprotein (Pseudogene); 14 bp deletion in pertussis, relative to parapertussis and bronchiseptica, around this position.


ensembl_gene_id: BP1831
symbol: BP1831
gene_biotype: protein_coding
description:
  Hypothetical protein; The N-terminal region of this CDS is similar to Streptomyces coelicolor hypothetical 7.7 kDa protein Sc7h1.36C TR:O54195 (EMBL:AL021411) (81 aa) fasta scores: E(): 0.24, 45.45% id in 66 aa.


ensembl_gene_id: BP1833
symbol: BP1833
gene_biotype: protein_coding
description:
  Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica.


ensembl_gene_id: BP1834
symbol: BP1834
gene_biotype: protein_coding
description:
  Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa.


ensembl_gene_id: BP1836
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: BP1837
symbol: BP1837
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: BP1838
symbol: BP1838
gene_biotype: protein_coding
description:
  Putative exported protein; Weakly similar to Bacillus subtilis endoglucanase precursor TR:Q03882 (EMBL:M38634) (148 aa) fasta scores: E(): 4, 26.71% id in 131 aa.


ensembl_gene_id: BP1839
symbol: rpsP
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 30S ribosomal protein S16 RpsP or B2609 or Z3903 or Ecs3472 SW:RS16_ECOLI (P02372) (82 aa) fasta scores: E(): 5.3e-17, 58.44% id in 77 aa, and to Ralstonia solanacearum probable 30S ribosomal subunit protein S16 RpsP TR:CAD14635 (EMBL:AL646061) (84 aa) fasta scores: E(): 1.3e-23, 72.61% id in 84 aa; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: BP1840
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: BP1841
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: BP1842
symbol: BP1842
gene_biotype: protein_coding
description:
  Probable class-V aminotransferase; Similar to Escherichia coli selenocysteine lyase CsdB or SufS or B1680 SW:CSDB_ECOLI (P77444) (406 aa) fasta scores: E(): 1.3e-18, 29.57% id in 355 aa, and to Streptomyces capreolus capreomycin acetyltransferase Cac TR:Q53824 (EMBL:U13077) (359 aa) fasta scores: E(): 8.9e-38, 39.33% id in 361 aa.


ensembl_gene_id: BP1843
symbol: BP1843
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein Smc02103 TR:CAC46072 (EMBL:AL591787) (154 aa) fasta scores: E(): 2.4e-22, 50% id in 156 aa, and to Agrobacterium tumefaciens strC58 Agr_c_2535p TR:AAK87164 (EMBL:AE008063) (156 aa) fasta scores: E(): 8.6e-21, 46.75% id in 154 aa.


ensembl_gene_id: BP1845
symbol: BP1845
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli unknown protein from 2D-PAGE YgfZ or B2898 SW:UP14_ECOLI (P39179) (325 aa) fasta scores: E(): 7.2e-17, 31.3% id in 345 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0759 TR:Q9I5H0 (EMBL:AE004511) (314 aa) fasta scores: E(): 1.6e-13, 32.91% id in 316 aa.


ensembl_gene_id: BP1846
symbol: mltG
gene_biotype: protein_coding
description:
  Putative exported protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: BP1847
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: BP1848
symbol: holB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli DNA polymerase III, delta' subunit HolB or B1099 SW:HOLB_ECOLI (P28631) (334 aa) fasta scores: E(): 8e-10, 29.94% id in 354 aa, and to Neisseria meningitidis putative DNA polymerase III, delta' subunit HolB or Nma0980 TR:Q9JV62 (EMBL:AL162754) (325 aa) fasta scores: E(): 3.6e-17, 34.4% id in 343 aa.


ensembl_gene_id: BP1849
symbol: BP1849
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nmb0771 TR:Q9K050 (EMBL:AE002431) (259 aa) fasta scores: E(): 1.5e-44, 50% id in 252 aa, and to Vibrio cholerae hypothetical protein Vc2014 TR:Q9KQI4 (EMBL:AE004276) (255 aa) fasta scores: E(): 1.7e-43, 49.8% id in 255 aa.


ensembl_gene_id: BP1850
symbol: BP1850
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Chromatium vinosum ankyrin homolog precursor SW:ANKH_CHRVI (Q06527) (323 aa) fasta scores: E(): 3.1e-09, 32.87% id in 219 aa.


ensembl_gene_id: BP1851
symbol: BP1851
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa3174 TR:Q9HZ60 (EMBL:AE004741) (242 aa) fasta scores: E(): 1e-28, 41.77% id in 237 aa, and to Vibrio cholerae transcriptional regulator, putative Vca0029 TR:Q9KND6 (EMBL:AE004346) (244 aa) fasta scores: E(): 2.7e-19, 34.02% id in 241 aa.


ensembl_gene_id: BP1852
symbol: BP1852
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutamine-binding periplasmic protein precursor GlnH or B0811 or Z1033 or Ecs0889 SW:GLNH_ECOLI (P10344) (248 aa) fasta scores: E(): 5.1e-24, 36% id in 250 aa, and to Yersinia pestis putative glutamine-binding periplasmic protein glnH TR:CAC91317 (EMBL:AJ414152) (247 aa) fasta scores: E(): 9.6e-25, 38.79% id in 250 aa; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: BP1855
symbol: glnQ-3
gene_biotype: protein_coding
description:
  Glutamine transport system permease (Pseudogene); 1 probable transmembrane helix predicted for BP1854 by TMHMM2.0 at aa 56-78.


ensembl_gene_id: BP1857
symbol: gdhA-2
gene_biotype: protein_coding
description:
  Probable arginase (Pseudogene); ScanRegExp hit to PS01053, Arginase family signature 3; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: BP1860
symbol: ilvG-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG or B3767 SW:ILVG_ECOLI (P00892) (548 aa) fasta scores: E(): 3.7e-41, 28.54% id in 522 aa, and to Rhizobium loti acetolactate synthase large subunit Mlr1615 TR:Q98K66 (EMBL:AP002997) (549 aa) fasta scores: E(): 4e-111, 51.8% id in 554 aa; Belongs to the TPP enzyme family.


ensembl_gene_id: BP1861
symbol: citE-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli citrate lyase beta chain CitE or B0616 SW:CILB_ECOLI (P77770) (302 aa) fasta scores: E(): 4.8e-19, 31.48% id in 289 aa, and to Salmonella enteritidis CitE TR:AAK97548 (EMBL:AF376036) (280 aa) fasta scores: E(): 3.7e-18, 30.96% id in 281 aa; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: BP1862
symbol: BP1862
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti putative C4-dicarboxylate transport system, permease large protein transmembrane Smb21436 TR:CAC49665 (EMBL:AL603646) (426 aa) fasta scores: E(): 1.5e-80, 54.97% id in 422 aa, and to Caulobacter crescentus DedA family protein Cc1448 TR:Q9A8A6 (EMBL:AE005819) (426 aa) fasta scores: E(): 8.7e-55, 39.37% id in 419 aa.


ensembl_gene_id: BP1863
symbol: BP1863
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti putative C4-dicarboxylate transport system, permease small protein transmembrane Smb21437 TR:CAC49666 (EMBL:AL603646) (186 aa) fasta scores: E(): 1.7e-15, 40.13% id in 147 aa, and to Agrobacterium tumefaciens strC58 Agr_l_3346p TR:AAK90250 (EMBL:AE008369) (183 aa) fasta scores: E(): 1.8e-05, 27.04% id in 159 aa.


ensembl_gene_id: BP1864
symbol: BP1864
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide Smb21438 TR:Q926B4 (EMBL:AL603646) (332 aa) fasta scores: E(): 1.1e-71, 56.44% id in 326 aa, and to Pasteurella multocida hypothetical protein Pm1252 TR:Q9CLH9 (EMBL:AE006164) (328 aa) fasta scores: E(): 6.7e-35, 33.75% id in 320 aa.


ensembl_gene_id: BP1865
symbol: BP1865
gene_biotype: protein_coding
description:
  Similar to Erwinia chrysanthemi exu regulon transcriptional regulator ExuR SW:EXUR_ERWCH (Q9X9E0) (259 aa) fasta scores: E(): 1.5e-19, 34.57% id in 214 aa, and to Rhizobium meliloti putative transcriptional regulator protein Smb20441 TR:CAC48823 (EMBL:AL603643) (246 aa) fasta scores: E(): 3.4e-23, 40% id in 235 aa.


ensembl_gene_id: BP1869
symbol: BP1869
gene_biotype: protein_coding
description:
  Putative cytochrome (Pseudogene); ScanRegExp hit to PS00190, Cytochrome c family heme-binding site signature.


ensembl_gene_id: BP1874
symbol: BP1874
gene_biotype: protein_coding
description:
  Hypothetical protein (Pseudogene); In-frame TAG stop codon in pertussis; CAG in parapertussis and bronchiseptica.


ensembl_gene_id: BP1875
symbol: BP1875
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa2116 TR:Q9I1Z9 (EMBL:AE004639) (265 aa) fasta scores: E(): 3e-59, 63.11% id in 244 aa, and to Bacillus subtilis hypothetical 28.1 kDa protein in sipU-kipI intergenic region YcsI SW:YCSI_BACSU (P42966) (257 aa) fasta scores: E(): 1.7e-57, 56.8% id in 257 aa; Belongs to the D-glutamate cyclase family.


ensembl_gene_id: BP1876
symbol: bvgR
gene_biotype: protein_coding
description:
  Regulatory protein BvgR; Previously sequenced as Bordetella pertussis BvgR TR:O85677 (EMBL:AF071567) (291 aa) fasta scores: E(): 5.1e-121, 100% id in 291 aa.


ensembl_gene_id: BP1877
symbol: bvgS
gene_biotype: protein_coding
description:
  Virulence sensor protein; Member of the two-component regulatory system BvgS/BvgA. Phosphorylates BvgA via a four-step phosphorelay in response to environmental signals.


ensembl_gene_id: BP1878
symbol: bvgA
gene_biotype: protein_coding
description:
  Virulence factors transcription regulator; Member of the two-component regulatory system BvgS/BvgA. Activates the transcription of virulence genes.


ensembl_gene_id: BP1881
symbol: fimB
gene_biotype: protein_coding
description:
  Fimbrial protein (pseudogene); Required for the biogenesis of the filamentous hemagglutinin and the fimbria; Belongs to the periplasmic pilus chaperone family.


ensembl_gene_id: BP1882
symbol: fimC
gene_biotype: protein_coding
description:
  Outer membrane usher protein precursor; Probable porin-like protein necessary for the assembly of a pilin-type protein; Belongs to the fimbrial export usher family.


ensembl_gene_id: BP1883
symbol: fimD
gene_biotype: protein_coding
description:
  Fimbrial adhesin; Previously sequenced as Bordetella pertussis protein FhaE precursor FhaE or FimD SW:FHAE_BORPE (Q00879) (376 aa) fasta scores: E(): 1.9e-143, 100% id in 365 aa.


ensembl_gene_id: BP1884
symbol: fhaC
gene_biotype: protein_coding
description:
  Hemolysin activator-like protein; Member of a two partner secretion pathway (TPS) in which it mediates the secretion of filamentous hemagglutinin FHA (fhaB). Belongs to the TPS (TC 1.B.20) family.


ensembl_gene_id: BP1886
symbol: BP1886
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); CC in pertussis; (AC)CC in parapertussis and bronchiseptica.


ensembl_gene_id: BP1887
symbol: BP1887
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2166 TR:CAD15873 (EMBL:AL646068) (339 aa) fasta scores: E(): 4.6e-38, 34.37% id in 320 aa, and to Pasteurella multocida hypothetical protein Pm1252 TR:Q9CLH9 (EMBL:AE006164) (328 aa) fasta scores: E(): 1.3e-11, 26.23% id in 324 aa.


ensembl_gene_id: BP1890
symbol: BP1890
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); Signal peptide predicted for BP1889 by SignalP 2.0 HMM (Signal peptide probabilty 0.995) with cleavage site probability 0.485 between residues 30 and 31.


ensembl_gene_id: BP1891
symbol: BP1891
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa.


ensembl_gene_id: BP1892
symbol: BP1892
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Agrobacterium tumefaciens strC58 Agr_l_563p TR:AAK88851 (EMBL:AE008228) (228 aa) fasta scores: E(): 1.7e-09, 29.25% id in 188 aa.


ensembl_gene_id: BP1894
symbol: BP1894
gene_biotype: protein_coding
description:
  Putative LysR-family transcriptional regulator (Pseudogene); Predicted helix-turn-helix motif with score 1265 (+3.50 SD) at aa 16-37, sequence RSFKAAAGKLHLTQAAISGRIA.


ensembl_gene_id: BP1895
symbol: oplaH
gene_biotype: protein_coding
description:
  5-oxoprolinase; Similar to Rattus norvegicus 5-oxoprolinase OplaH SW:OPLA_RAT (P97608) (1288 aa) fasta scores: E(): 3.5e-94, 45.17% id in 1264 aa, and to Rhizobium loti 5-oxoprolinase Mlr1573 TR:Q98K99 (EMBL:AP002997) (1210 aa) fasta scores: E(): 0, 59.37% id in 1216 aa.


ensembl_gene_id: BP1896
symbol: BP1896
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum conserved hypothetical protein Rsc1742 TR:CAD15444 (EMBL:AL646066) (350 aa) fasta scores: E(): 2.1e-57, 46.84% id in 333 aa, and to Emericella nidulans acyl-coenzyme acyl coenzyme A:6-aminopenicillanic-acid-acyltransferase precursor PendE or Aat SW:AAAA_EMENI (P21133) (357 aa) fasta scores: E(): 4.9e-06, 24.31% id in 329 aa.


ensembl_gene_id: BP1899
symbol: BP1899
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative transcription regulator protein Smc00263 TR:Q92PP5 (EMBL:AL591788) (282 aa) fasta scores: E(): 6.2e-22, 36.03% id in 247 aa, and to Rhizobium loti transcription regulator Mll9009 TR:Q982L6 (EMBL:AP003015) (269 aa) fasta scores: E(): 1.6e-15, 32.89% id in 228 aa.


ensembl_gene_id: BP1900
symbol: BP1900
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.1e-55, 48.32% id in 329 aa, and to Agrobacterium tumefaciens StrC58 Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 2.7e-52, 46.6% id in 324 aa.


ensembl_gene_id: BP1901
symbol: BP1901
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable methyltransferase Pa3817 TR:Q9HXI5 (EMBL:AE004799) (257 aa) fasta scores: E(): 2.5e-30, 41.93% id in 248 aa, and to Azotobacter vinelandii hypothetical 28.2 kDa protein TR:O69217 (EMBL:AF010139) (257 aa) fasta scores: E(): 1e-28, 41.15% id in 243 aa.


ensembl_gene_id: BP1902
symbol: suhB
gene_biotype: protein_coding
description:
  Inositol-1-monophosphatase; Similar to Escherichia coli extragenic suppressor protein SuhB or SsyA or b2533 SW:SUHB_ECOLI (P22783) (267 aa) fasta scores: E(): 3.2e-41, 46.33% id in 259 aa, and to Ralstonia solanacearum probable inositol monophosphatase suhB TR:CAD14862 (EMBL:AL646063) (270 aa) fasta scores: E(): 7.4e-54, 55.34% id in 262 aa. Also similar to BP2813, 40.000% identity (43.200% ungapped) in 270 aa overlap.


ensembl_gene_id: BP1903
symbol: BP1903
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Salmonella enterica subspenterica serovar Typhi putative membrane protein Sty1958 TR:CAD05511 (EMBL:AL627272) (519 aa) fasta scores: E(): 1e-110, 59.22% id in 515 aa, and to Escherichia coli hypothetical protein YoaE or B1816 or Z2859 or Ecs2525 SW:YOAE_ECOLI (P76262) (518 aa) fasta scores: E(): 6.4e-109, 57.87% id in 527 aa.


ensembl_gene_id: BP1904
symbol: bacA
gene_biotype: protein_coding
description:
  Bacitracin resistance protein; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: BP1905
symbol: lpxH
gene_biotype: protein_coding
description:
  UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: BP1906
symbol: ppiB
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: BP1907
symbol: BP1907
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhodobacter sphaeroides hypothetical 21.1 kDa protein putative Orf TR:Q53172 (EMBL:Z50182) (197 aa) fasta scores: E(): 0.41, 29.33% id in 150 aa, and to Desulfotomaculum thermocisternum hypothetical 25.2 kDa protein TR:Q9ZH15 (EMBL:AF074396) (224 aa) fasta scores: E(): 0.098, 25.98% id in 127 aa.


ensembl_gene_id: BP1908
symbol: cysS
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cysteinyl-tRNA synthetase CysS or B0526 SW:SYC_ECOLI (P21888) (461 aa) fasta scores: E(): 2.2e-57, 50% id in 496 aa, and to Neisseria meningitidis cysteinyl-tRNA synthetase Nmb2083 TR:Q9JXE6 (EMBL:AE002558) (473 aa) fasta scores: E(): 1.3e-78, 52.98% id in 502 aa; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: BP1909
symbol: BP1909
gene_biotype: protein_coding
description:
  Similar to Schizosaccharomyces pombe DNA-3-methyladenine glycosylase Mag1 or Spapb24d3.04C SW:MAG1_SCHPO (Q92383) (228 aa) fasta scores: E(): 2e-16, 34.84% id in 198 aa, and to Halobacterium sp 3-methyladenine DNA glycosylase AlkA or Vng1311G TR:Q9HQ62 (EMBL:AE005053) (191 aa) fasta scores: E(): 5.2e-20, 38.74% id in 191 aa.


ensembl_gene_id: BP1910
symbol: accA-2
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: BP1912
symbol: tilS
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: BP1913
symbol: ask
gene_biotype: protein_coding
description:
  Aspartokinase; Similar to Mycobacterium smegmatis aspartokinase Ask SW:AK_MYCSM (P41403) (421 aa) fasta scores: E(): 2e-66, 46.28% id in 417 aa, and to Ralstonia solanacearum probable aspartate kinase protein LysC TR:CAD14873 (EMBL:AL646063) (416 aa) fasta scores: E(): 3.7e-120, 77.34% id in 415 aa; Belongs to the aspartokinase family.


ensembl_gene_id: BP1915
symbol: BP1915
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Streptomyces glaucescens tetracenomycin polyketide synthesis protein TcmJ SW:TCMJ_STRGA (P16558) (149 aa) fasta scores: E(): 0.00089, 26.84% id in 149 aa, and to Streptomyces coelicolor 16.7 kDa protein in whie locus Sc6g9.14 SW:WH16_STRCO (P23157) (157 aa) fasta scores: E(): 1.1e-05, 34.4% id in 93 aa.


ensembl_gene_id: BP1916
symbol: BP1916
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein Sma0797 TR:AAK65090 (EMBL:AE007233) (108 aa) fasta scores: E(): 8.5e-16, 42.15% id in 102 aa, and to Agrobacterium tumefaciens StrC58 Agr_l_1239p TR:AAK89197 (EMBL:AE008260) (104 aa) fasta scores: E(): 2.3e-17, 42.71% id in 103 aa.


ensembl_gene_id: BP1917
symbol: BP1917
gene_biotype: protein_coding
description:
  Putative 3-hydroxyacyl-CoA dehydrogenase; Similar to Oryctolagus cuniculus lambda-crystallin SW:CRYL_RABIT (P14755) (319 aa) fasta scores: E(): 2.2e-28, 35.43% id in 302 aa, and to Rhizobium loti Mll1034 protein TR:Q98LG2 (EMBL:AP002996) (315 aa) fasta scores: E(): 3.9e-35, 39.39% id in 297 aa.


ensembl_gene_id: BP1918
symbol: BP1918
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Bacillus halodurans C4-dicarboxylate transport system Bh2672 TR:Q9K9H5 (EMBL:AP001516) (183 aa) fasta scores: E(): 1.4e-07, 29.6% id in 152 aa, and to Agrobacterium tumefaciens StrC58 Agr_l_3346p TR:AAK90250 (EMBL:AE008369) (183 aa) fasta scores: E(): 2.4e-06, 30.3% id in 165 aa.


ensembl_gene_id: BP1919
symbol: BP1919
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pasteurella multocida hypothetical protein Pm0273 TR:Q9CNZ7 (EMBL:AE006062) (427 aa) fasta scores: E(): 1.8e-62, 43.91% id in 419 aa, and to Bacillus halodurans C4-dicarboxylate transport system bh2671 TR:Q9K9H6 (EMBL:AP001516) (426 aa) fasta scores: E(): 4.3e-65, 46.77% id in 419 aa.


ensembl_gene_id: BP1920
symbol: BP1920
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti putative ABC transporter periplasmic solute-binding protein Smb20036 TR:CAC48439 (EMBL:AL603642) (338 aa) fasta scores: E(): 4.7e-25, 32.12% id in 330 aa, and to Bacillus halodurans C4-dicarboxylate transport system bh0701 TR:Q9KEZ8 (EMBL:AP001509) (341 aa) fasta scores: E(): 2.1e-23, 31.2% id in 282 aa.


ensembl_gene_id: BP1921
symbol: bioH
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to Kurthia sp538-KA26 BioH TR:Q9AJM9 (EMBL:AB045874) (267 aa) fasta scores: E(): 1.4e-15, 30.36% id in 247 aa, and to Caulobacter crescentus hydrolase, alpha/beta hydrolase fold family Cc2797 TR:Q9A4N3 (EMBL:AE005945) (269 aa) fasta scores: E(): 6.7e-19, 36.54% id in 249 aa.


ensembl_gene_id: BP1922
symbol: nadX2
gene_biotype: protein_coding
description:
  Putative exported protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.


ensembl_gene_id: BP1923
symbol: BP1923
gene_biotype: protein_coding
description:
  Probable short chain dehydrogenase; Similar to Brevibacterium spHCU cyclohexanol dehydrogenase ChnA TR:AAK73164 (EMBL:AF257214) (256 aa) fasta scores: E(): 8.4e-30, 42.29% id in 253 aa, and to Streptomyces coelicolor probable oxidoreductase Scf41.15 TR:Q9RJV4 (EMBL:AL117387) (263 aa) fasta scores: E(): 2.4e-31, 45.23% id in 252 aa.


ensembl_gene_id: BP1924
symbol: BP1924
gene_biotype: protein_coding
description:
  Probable TetR-family transcriptional regulator; Similar to Burkholderia pseudomallei regulator AmrR TR:O87934 (EMBL:AF072887) (187 aa) fasta scores: E(): 0.18, 26.11% id in 180 aa, and to Agrobacterium tumefaciens StrC58 Agr_c_1821p TR:AAK86802 (EMBL:AE008030) (208 aa) fasta scores: E(): 0.092, 24.36% id in 197 aa.


ensembl_gene_id: BP1925
symbol: BP1925
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Escherichia coli transcriptional activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 1.7e-20, 30.63% id in 284 aa, and to Rhizobium loti transcriptional regulator Mlr7023 TR:Q987J8 (EMBL:AP003010) (301 aa) fasta scores: E(): 1.9e-20, 31.72% id in 290 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1926
symbol: BP1926
gene_biotype: protein_coding
description:
  Putative extracellular solute-binding protein; Similar to Rhizobium loti ABC transporter, binding protein Mlr7676 TR:Q985H2 (EMBL:AP003012) (370 aa) fasta scores: E(): 5.6e-54, 41.92% id in 353 aa, and to Agrobacterium tumefaciens StrC58 Agr_l_1237p TR:AAK89196 (EMBL:AE008260) (336 aa) fasta scores: E(): 7.3e-34, 34.81% id in 316 aa.


ensembl_gene_id: BP1928
symbol: BP1928
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); (C)3 in pertussis; (C)3(GAGCGCGGAAATGGCC) in parapertussis and bronchiseptica.


ensembl_gene_id: BP1929
symbol: BP1929
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti ABC transporter, permease protein Mll2949 TR:Q98HB0 (EMBL:AP003000) (265 aa) fasta scores: E(): 3.9e-31, 40.4% id in 250 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter Pa0606 TR:Q9I5T2 (EMBL:AE004497) (276 aa) fasta scores: E(): 3.3e-30, 38.4% id in 263 aa.


ensembl_gene_id: BP1930
symbol: BP1930
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti ABC transporter, ATP-binding protein Mll2948 TR:Q98HB1 (EMBL:AP003000) (371 aa) fasta scores: E(): 3.5e-46, 43.86% id in 367 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa0603 TR:Q9I5T5 (EMBL:AE004496) (369 aa) fasta scores: E(): 8.6e-46, 43.37% id in 362 aa.


ensembl_gene_id: BP1931
symbol: BP1931
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae NADH-dependent flavin oxidoreductase, Oye family Vca0998 TR:Q9KKV2 (EMBL:AE004426) (347 aa) fasta scores: E(): 1.1e-27, 35.46% id in 344 aa, and to Xylella fastidiosa NAD Xf1732 TR:Q9PCP6 (EMBL:AE003996) (368 aa) fasta scores: E(): 5.4e-26, 35.92% id in 348 aa.


ensembl_gene_id: BP1933
symbol: BP1933
gene_biotype: protein_coding
description:
  Probable transcriptional regulator (pseudogene); Predicted helix-turn-helix motif with score 1388 (+3.91 SD) at aa 31-52, sequence LTLAEAAYRTGLSRAAARRVLL.


ensembl_gene_id: BP1934
symbol: BP1934
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein Sma1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.1e-48, 47.26% id in 311 aa, and to Agrobacterium tumefaciens StrC58 Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 3.6e-43, 41.08% id in 314 aa.


ensembl_gene_id: BP1935
symbol: BP1935
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein Sma2289 TR:AAK65890 (EMBL:AE007308) (130 aa) fasta scores: E(): 2.1e-10, 34.4% id in 125 aa, and to Streptomyces coelicolor conserved hypothetical protein Sc9c7.14C TR:Q9ZBJ6 (EMBL:AL035161) (132 aa) fasta scores: E(): 2e-09, 37.81% id in 119 aa.


ensembl_gene_id: BP1936
symbol: BP1936
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Streptomyces coelicolor hypothetical 15.2 kDa protein Scd82.08 TR:Q9L0M3 (EMBL:AL160431) (142 aa) fasta scores: E(): 0.0063, 26.38% id in 144 aa.


ensembl_gene_id: BP1939
symbol: BP1939
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative transcription regulator protein Smc01226 TR:CAC46144 (EMBL:AL591787) (96 aa) fasta scores: E(): 1.5e-27, 72.04% id in 93 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4354 R:Q9HW47 (EMBL:AE004851) (100 aa) fasta scores: E(): 1.6e-23, 60% id in 100 aa.


ensembl_gene_id: BP1940
symbol: nemA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli N-ethylmaleimide reductase NemA or B1650 SW:NEMA_ECOLI (P77258) (365 aa) fasta scores: E(): 7.3e-64, 51.74% id in 373 aa, and to Rhizobium loti morphinone reductase Mll2211 TR:Q98IX0 (EMBL:AP002999) (371 aa) fasta scores: E(): 5.3e-102, 71.96% id in 371 aa.


ensembl_gene_id: BP1942
symbol: hmsR
gene_biotype: protein_coding
description:
  Putative glycosyl transferase; Similar to Staphylococcus caprae IcaA TR:Q9AIQ8 (EMBL:AF246926) (411 aa) fasta scores: E(): 1.1e-55, 37.28% id in 405 aa, and to Yersinia pestis HmsR TR:Q56941 (EMBL:U22837) (457 aa) fasta scores: E(): 2.7e-76, 48.66% id in 411 aa.


ensembl_gene_id: BP1943
symbol: hmsF
gene_biotype: protein_coding
description:
  Putative hemin storage protein; Similar to Yersinia pestis HmsF protein TR:Q9R7V4 (EMBL:AL031866) (673 aa) fasta scores: E(): 1.3e-94, 40.2% id in 679 aa, and to Escherichia coli hypothetical lipoprotein YcdR precursor YcdR or B1023 SW:YCDR_ECOLI (P75906) (672 aa) fasta scores: E(): 3.3e-89, 39.38% id in 655 aa.


ensembl_gene_id: BP1944
symbol: hmsH
gene_biotype: protein_coding
description:
  Putative hemin storage protein; Similar to Yersinia pestis HmsH TR:Q56939 (EMBL:U22837) (822 aa) fasta scores: E(): 1.5e-25, 24.39% id in 701 aa.


ensembl_gene_id: BP1946
symbol: BP1946
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti transcriptional regulator Mll4876 TR:Q98D38 (EMBL:AP003005) (153 aa) fasta scores: E(): 1.3e-15, 44.44% id in 135 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa1603 TR:Q9I3B8 (EMBL:AE004588) (140 aa) fasta scores: E(): 3.1e-12, 37.03% id in 135 aa.


ensembl_gene_id: BP1948
symbol: BP1948
gene_biotype: protein_coding
description:
  Branched-chain amino acid-binding protein; Similar to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or Pa1074 SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): 3.9e-12, 24.37% id in 357 aa, and to Streptococcus pneumoniae branched-chain amino acid ABC transporter, amino acid-binding protein Sp0749 TR:Q97RQ0 (EMBL:AE007382) (386 aa) fasta scores: E(): 9.5e-12, 24.3% id in 362 aa.


ensembl_gene_id: BP1949
symbol: BP1949
gene_biotype: protein_coding
description:
  Putative permease component of branched-chain amino acid transport system; Similar to Pseudomonas aeruginosa putative membrane spanning protein OhbE TR:O87621 (EMBL:AF087482) (614 aa) fasta scores: E(): 1e-31, 31.4% id in 449 aa; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: BP1950
symbol: BP1950
gene_biotype: protein_coding
description:
  Similar to Streptococcus pneumoniae branched-chain amino acid ABC transporter, ATP-binding protein sp0752 TR:Q97RP7 (EMBL:AE007382) (254 aa) fasta scores: E(): 1.2e-30, 42.23% id in 251 aa, and to Rhizobium meliloti putative high-affinity branched-chain amino acid transport ATP-binding ABC transporter protein smc02357 TR:CAC47163 (EMBL:AL591791) (244 aa) fasta scores: E(): 3e-27, 40.98% id in 244 aa.


ensembl_gene_id: BP1951
symbol: BP1951
gene_biotype: protein_coding
description:
  Putative ATP-binding component of ABC transporter; Similar to Pseudomonas aeruginosa putative substrate binding protein OhbG TR:O87623 (EMBL:AF087482) (239 aa) fasta scores: E(): 5.2e-31, 46.44% id in 239 aa, and to Rhizobium meliloti putative ATP-binding ABC transporter protein Smc03119 TR:CAC47553 (EMBL:AL591792) (233 aa) fasta scores: E(): 9.8e-31, 43.69% id in 238 aa.


ensembl_gene_id: BP1954
symbol: BP1954
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative salicylate hydroxylase Sce29.14C TR:Q9Z4Y6 (EMBL:AL035707) (420 aa) fasta scores: E(): 2.3e-46, 40.42% id in 329 aa, and to Acinetobacter SpADP1. hypothetical 42.4 kDa protein TR:O24844 (EMBL:AF009672) (381 aa) fasta scores: E(): 1.2e-50, 38.19% id in 377 aa.


ensembl_gene_id: BP1955
symbol: maiA-2
gene_biotype: protein_coding
description:
  Similar to Serratia marcescens maleate cis-trans isomerase MaiA TR:Q9KWI0 (EMBL:AB035810) (250 aa) fasta scores: E(): 8.2e-69, 79.67% id in 246 aa, and to Bacillus stearothermophilus maleate cis-trans isomerase MaiA TR:Q9WX57 (EMBL:AB015134) (251 aa) fasta scores: E(): 1.1e-56, 65.46% id in 249 aa. Identical to BP0579, 99.600% identity (99.600% ungapped) in 250 aa overlap.


ensembl_gene_id: BP1957
symbol: BP1957
gene_biotype: protein_coding
description:
  Probable alpha/beta hydrolase (Pseudogene); G in pertussis; G(AG) in parapertussis and bronchiseptica.


ensembl_gene_id: BP1958
symbol: BP1958
gene_biotype: protein_coding
description:
  Putative isochorismatase; Similar to Arthrobacter sp N-carbamoylsarcosine amidase SW:CSH_ARTSP (P32400) (264 aa) fasta scores: E(): 2e-14, 32.67% id in 202 aa, and to Arthrobacter keyseri putative phthalate ester hydrolase pehA TR:Q9AGK9 (EMBL:AF331043) (218 aa) fasta scores: E(): 3.4e-19, 37.3% id in 193 aa. Identical to BP1958, 100.000% identity (100.000% ungapped) in 205 aa overlap.


ensembl_gene_id: BP1962
symbol: bfrI
gene_biotype: protein_coding
description:
  Putative ferrisiderophore receptor; Similar to Pseudomonas aeruginosa hydroxamate-type ferrisiderophore receptor FiuA TR:O68595 (EMBL:AF051691) (802 aa) fasta scores: E(): 1.7e-71, 36.83% id in 714 aa, and to Salmonella typhimurium ferrichrome iron receptor FhuA TR:O86925 (EMBL:Y14025) (729 aa) fasta scores: E(): 2e-65, 35.72% id in 725 aa.


ensembl_gene_id: BP1965
symbol: BP1965
gene_biotype: protein_coding
description:
  Putative transcriptional regulator (Pseudogene); In-frame TGA stop codon in pertussis; TGG in parapertussis and bronchiseptica.


ensembl_gene_id: BP1969
symbol: BP1969
gene_biotype: protein_coding
description:
  Fusion between a transposase and a C-terminal portion of a regulatory protein (Pseudogene); HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family.


ensembl_gene_id: BP1970
symbol: pgm
gene_biotype: protein_coding
description:
  Phosphoglucomutase; Similar to Bordetella bronchiseptica phosphoglucomutase Pgm TR:Q9S3V9 (EMBL:AF171632) (392 aa) fasta scores: E(): 4.2e-74, 50.89% id in 393 aa, and to Pseudomonas aeruginosa phosphomannomutase AlgC or Pa5322 SW:ALGC_PSEAE (P26276) (462 aa) fasta scores: E(): 5.6e-67, 43.57% id in 459 aa.


ensembl_gene_id: BP1971
symbol: pgi
gene_biotype: protein_coding
description:
  Similar to Zymomonas mobilis glucose-6-phosphate isomerase Pgi SW:G6PI_ZYMMO (P28718) (507 aa) fasta scores: E(): 6.4e-34, 31.46% id in 464 aa, and to Xanthomonas campestris glucose-6-phosphate isomerase Pgi TR:O68824 (EMBL:AF054807) (562 aa) fasta scores: E(): 1.4e-32, 31.1% id in 524 aa. Also similar to BP3142, 40.891% identity (43.238% ungapped) in 516 aa overlap.


ensembl_gene_id: BP1972
symbol: srpH
gene_biotype: protein_coding
description:
  Similar to Synechococcus sp serine acetyltransferase, plasmid SrpH SW:SRPH_SYNP7 (Q59967) (319 aa) fasta scores: E(): 8.6e-57, 53.07% id in 309 aa, and to Trypanosoma cruzi serine acetyltransferase Sat TR:Q9BKB1 (EMBL:AF296848) (348 aa) fasta scores: E(): 1.1e-28, 48.93% id in 188 aa.


ensembl_gene_id: BP1973
symbol: BP1973
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa probable Mfs transporter Pa1286 TR:Q9I458 (EMBL:AE004558) (399 aa) fasta scores: E(): 2.4e-63, 49.5% id in 400 aa, and to Agrobacterium tumefaciens StrC58 Agr_c_1918p TR:AAK86848 (EMBL:AE008034) (414 aa) fasta scores: E(): 1.2e-55, 43.07% id in 390 aa. Also similar to BP1546, 42.569% identity (43.333% ungapped) in 397 aa overlap.


ensembl_gene_id: BP1974
symbol: cobB
gene_biotype: protein_coding
description:
  Putative Sir2-like regulatory protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.


ensembl_gene_id: BP1975
symbol: BP1975
gene_biotype: protein_coding
description:
  Putative inositol monophosphatase; Similar to Escherichia coli extragenic suppressor protein SuhB or SsyA or B2533 SW:SUHB_ECOLI (P22783) (267 aa) fasta scores: E(): 3.5e-13, 32.43% id in 222 aa, and to Rhizobium loti monophosphatase-like protein Mlr0048 TR:Q98NP3 (EMBL:AP002994) (275 aa) fasta scores: E(): 1.1e-49, 48.7% id in 271 aa.


ensembl_gene_id: BP1976
symbol: gabD-3
gene_biotype: protein_coding
description:
  Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or B2661 SW:GABD_ECOLI (P25526) (482 aa) fasta scores: E(): 7e-125, 66.66% id in 480 aa, and to Alcaligenes eutrophus succinate semialdehyde dehydrogenase GabD TR:Q9RBF6 (EMBL:AF175740) (483 aa) fasta scores: E(): 2.8e-127, 66.87% id in 480 aa.


ensembl_gene_id: BP1977
symbol: goaG
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 4-aminobutyrate aminotransferase GoaG or B1302 SW:GOAG_ECOLI (P50457) (421 aa) fasta scores: E(): 2.8e-108, 68.09% id in 420 aa, and to Yersinia pestis putative aminobutyrate aminotransferase GoaG TR:CAC92096 (EMBL:AJ414154) (429 aa) fasta scores: E(): 4.7e-105, 64.33% id in 429 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: BP1979
symbol: BP1979
gene_biotype: protein_coding
description:
  Probable GntR-family transcriptional regulator (Pseudogene); (CG)3 in pertussis; (CG)4 in parapertussis and bronchiseptica.


ensembl_gene_id: BP1980
symbol: BP1980
gene_biotype: protein_coding
description:
  Similar to Escherichia coli DNA helicase II UvrD or MutU or PdeB or Rad or RecL or B3813 SW:UVRD_ECOLI (P03018) (720 aa) fasta scores: E(): 2.1e-28, 32.46% id in 687 aa, and to Ralstonia solanacearum probable ATP-dependent DNA helicase II protein rsp1276 TR:CAD18427 (EMBL:AL646083) (710 aa) fasta scores: E(): 1.2e-168, 63.84% id in 697 aa.


ensembl_gene_id: BP1982
symbol: BP1982
gene_biotype: protein_coding
description:
  Putative magnesium transporter (Pseudogene); 2 probable transmembrane helices predicted for BP1981 by TMHMM2.0 at aa 172-191 and 201-223.


ensembl_gene_id: BP1984
symbol: BP1984
gene_biotype: protein_coding
description:
  Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): 6.3e-22, 28.52% id in 333 aa, and to Streptococcus pneumoniae R6 ABC transporter membrane-spanning permease-oligopeptide transport AppB TR:AAK99996 (EMBL:AE008491) (331 aa) fasta scores: E(): 1.5e-21, 28.31% id in 332 aa.


ensembl_gene_id: BP1985
symbol: BP1985
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor oligopeptide transport integral membrane protein Sc2a11.10 TR:O86571 (EMBL:AL031184) (335 aa) fasta scores: E(): 5.7e-22, 32.79% id in 247 aa, and to Deinococcus radiodurans peptide ABC transporter, permease protein Dr0958 TR:Q9RVR4 (EMBL:AE001948) (332 aa) fasta scores: E(): 3.3e-18, 31.68% id in 243 aa.


ensembl_gene_id: BP1986
symbol: BP1986
gene_biotype: protein_coding
description:
  Putative ABC transporter, ATP-binding protein; Similar to Agrobacterium tumefaciens MoaD TR:O50270 (EMBL:AF242881) (588 aa) fasta scores: E(): 2.2e-81, 48.35% id in 548 aa, and to Rhizobium meliloti putative peptide transport ATP-binding ABC transporter protein smc04288 TR:CAC46528 (EMBL:AL591789) (593 aa) fasta scores: E(): 3.3e-86, 48.91% id in 554 aa.


ensembl_gene_id: BP1987
symbol: BP1987
gene_biotype: protein_coding
description:
  Probable MarR-family transcriptional regulator; Similar to Streptomyces coelicolor hypothetical 19.0 kDa protein Sc10b7.04 TR:Q9X957 (EMBL:Y13833) (174 aa) fasta scores: E(): 1.5e-07, 37.24% id in 145 aa, and to Bacillus subtilis YcgE protein YcgE TR:O31472 (EMBL:Z99105) (155 aa) fasta scores: E(): 1.8e-07, 32.85% id in 140 aa.


ensembl_gene_id: BP1989
symbol: BP1989
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); (GC)4 in pertussis; (GC)2 in parapertussis and bronchiseptica.


ensembl_gene_id: BP1990
symbol: BP1990
gene_biotype: protein_coding
description:
  Putative membrane protein; N-terminus is similar to the N-terminal region of similar to Pseudomonas aeruginosa hypothetical protein PaA1727 TR:Q9I310 (EMBL:AE004599) (685 aa) fasta scores: E(): 1.5e-17, 38.62% id in 189 aa. Similar to N-terminal region of Pseudomonas carboxydovorans hypothetical protein CoxC TR:Q9KX27 (EMBL:X82447) (402 aa) fasta scores: E(): 6.7e-16, 33.33% id in 264 aa.


ensembl_gene_id: BP1991
symbol: BP1991
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Caulobacter crescentus pilus subunit protein CC2948 TR:Q9L720 (EMBL:AF229646) (59 aa) fasta scores: E(): 4.6e-05, 54% id in 50 aa, and to Rhizobium meliloti probable pSymA plasmid PilA2 pilus assembly protein TR:AAK65511 (EMBL:AE007272) (56 aa) fasta scores: E(): 0.00024, 50% id in 54 aa.


ensembl_gene_id: BP1992
symbol: BP1992
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Bacillus halodurans late competence protein required for processing and translocation BH3035 TR:Q9K8H1 (EMBL:AP001517) (162 aa) fasta scores: E(): 0.0035, 26.41% id in 159 aa, and to the C-terminal region of Aeromonas hydrophila type 4 prepilin-like proteins leader peptide processing enzyme [includes: leader peptidase; N-methyltransferase] TapD SW:LEP4_AERHY (P45794) (290 aa) fasta scores: E(): 0.45, 27.84% id in 176 aa.


ensembl_gene_id: BP1993
symbol: BP1993
gene_biotype: protein_coding
description:
  Putative exported protein; Poor database matches. Similar to the C-terminal region of Pseudomonas aeruginosa hypothetical protein PA4294 TR:Q9HWA6 (EMBL:AE004845) (168 aa) fasta scores: E(): 0.0027, 32.16% id in 143 aa.


ensembl_gene_id: BP1994
symbol: BP1994
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein PA5409 TR:Q9HTF5 (EMBL:AE004953) (186 aa) fasta scores: E(): 2.5, 29.8% id in 151 aa. N-terminus is similar to N-terminal region of Rhizobium meliloti hypothetical protein SMA1572 TR:AAK65512 (EMBL:AE007272) (141 aa) fasta scores: E(): 0.029, 38.82% id in 85 aa.


ensembl_gene_id: BP1995
symbol: BP1995
gene_biotype: protein_coding
description:
  Putative membrane protein; N-terminus is similar to the N-terminal region of Pseudomonas aeruginosa hypothetical protein PA4305 TR:Q9HW95 (EMBL:AE004846) (303 aa) fasta scores: E(): 3.9e-14, 36.36% id in 242 aa, and Rhizobium meliloti putative pilus assembly signal peptide protein TR:CAC41527 (EMBL:AL591782) (269 aa) fasta scores: E(): 0.0098, 33.2% id in 250 aa.


ensembl_gene_id: BP1996
symbol: BP1996
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable type II secretion system protein PA4304 TR:Q9HW96 (EMBL:AE004846) (416 aa) fasta scores: E(): 1e-32, 39.73% id in 453 aa. C-terminus is similar to the C-terminal region of Aeromonas salmonicida general secretion pathway protein D precursor ExeD SW:GSPD_AERSA (P45778) (678 aa) fasta scores: E(): 6.1e-12, 26.47% id in 374 aa; Belongs to the bacterial secretin family.


ensembl_gene_id: BP1997
symbol: BP1997
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Ralstonia solanacearum probable pilus assembly protein Cpae2 or Rsp1086 or Rs02593 SWALL:Q8XQY2 (EMBL:AL646082) (439 aa) fasta scores: E(): 9.8e-23, 34.31% id in 440 aa.


ensembl_gene_id: BP1999
symbol: BP1999
gene_biotype: protein_coding
description:
  Bacterial type II secretion system protein (pseudogene); CCC in pertussis; C(AT)CC in parapertussis and bronchiseptica.


ensembl_gene_id: BP2001
symbol: BP2001
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); 3 probable transmembrane helices predicted for BP2000 by TMHMM2.0 at aa 81-100, 110-132 and 263-285.


ensembl_gene_id: BP2004
symbol: BP2004
gene_biotype: protein_coding
description:
  Putative response regulator; Similar, except at N-terminus, to Pseudomonas aeruginosa type 4 fimbriae expression regulatory protein PilR, pilR or PA4547 SW:PILR_PSEAE (Q00934) (445 aa) fasta scores: E(): 2e-35, 40.123% id in 324 aa. Similar to many other bacterial response regulators.


ensembl_gene_id: BP2006
symbol: BP2006
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti hypothetical protein MLL3449 TR:Q98G81 (EMBL:AP003002) (99 aa) fasta scores: E(): 4.7e-06, 42.268% id in 97 aa, Caulobacter crescentus hypothetical protein CC0827 TR:Q9A9Y4 (EMBL:AE005759) (145 aa) fasta scores: E(): 1.2e-05, 41.549% id in 142 aa and to Agrobacterium tumefaciens hypothetical protein AGR_l_2637 TR:AAK89886 (EMBL:AE008331) (142 aa) fasta scores: E(): 4.5e-05, 42.466% id in 146 aa.


ensembl_gene_id: BP2007
symbol: BP2007
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa RNA polymerase sigma-H factor AlgU or AlgT or PA0762 SW:RPSH_PSEAE (Q06198) (193 aa) fasta scores: E(): 2.4e-14, 34.783% id in 184 aa and to others e.g. Rhizobium meliloti putative RNA polymerase sigma factor protein TR:CAC49904 (EMBL:AL603647) (227 aa) fasta scores: E(): 4.8e-28, 43.836% id in 219 aa; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: BP2008
symbol: BP2008
gene_biotype: protein_coding
description:
  Putative exported protein; Contains a region with similarity to bacterial hypothetical proteins e.g. Deinococcus radiodurans hypothetical protein DRA0258 TR:Q9RYQ1 (EMBL:AE001863) (288 aa) fasta scores: E(): 0.0007, 30.726% id in 179 aa.


ensembl_gene_id: BP2009
symbol: BP2009
gene_biotype: protein_coding
description:
  Similar to many cytochromes C e.g. Rhodopseudomonas viridis cytochrome c2 precursor CycA, cycA SW:CY2_RHOVI (P00083) (127 aa) fasta scores: E(): 1.8e-14, 45.045% id in 111 aa.


ensembl_gene_id: BP2010
symbol: efp
gene_biotype: protein_coding
description:
  Putative elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: BP2011
symbol: BP2011
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA2852 TR:Q9HZZ1 (EMBL:AE004711) (376 aa) fasta scores: E(): 1.6e-53, 47.013% id in 385 aa and to Neisseria meningitidis hypothetical protein NMA1132 TR:Q9JUU3 (EMBL:AL162755) (382 aa) fasta scores: E(): 3e-37, 37.105% id in 380 aa.


ensembl_gene_id: BP2012
symbol: BP2012
gene_biotype: protein_coding
description:
  Similar to Leishmania major hypothetical protein LM12.86 TR:Q9N746 (EMBL:AL390114) (163 aa) fasta scores: E(): 9.1e-20, 43.949% id in 157 aa and to Leishmania major hypothetical protein LM12.84 TR:Q9GY60 (EMBL:AL390114) (153 aa) fasta scores: E(): 5.2e-10, 48.718% id in 78 aa.


ensembl_gene_id: BP2013
symbol: BP2013
gene_biotype: protein_coding
description:
  Similar to bacterial hypothetical proteins e.g. Pseudomonas aeruginosa hypothetical protein PA2839 TR:Q9I004 (EMBL:AE004710) (256 aa) fasta scores: E(): 2.2e-43, 49.612% id in 258 aa. Also similar to parts of some eukaryotic proteins e.g. Arabidopsis thaliana hypothetical protein AT4G15090 TR:O23363 (EMBL:Z97337) (1705 aa) fasta scores: E(): 2.5e-32, 40.417% id in 240 aa and Neurospora crassa conserved hypothetical protein B2J23.80 TR:Q9HFJ4 (EMBL:AL442164) (379 aa) fasta scores: E(): 7.7e-21, 37.607% id in 234 aa.


ensembl_gene_id: BP2014
symbol: acnA
gene_biotype: protein_coding
description:
  Putative aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.


ensembl_gene_id: BP2015
symbol: BP2015
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Pseudomonas aeruginosa hypothetical protein PA2230 TR:Q9I1N9 (EMBL:AE004649) (223 aa) fasta scores: E(): 2e-68, 78.351% id in 194 aa and to Rhizobium meliloti putative transmembrane protein SMC01561 TR:CAC46891 (EMBL:AL591790) (189 aa) fasta scores: E(): 2e-28, 41.053% id in 190 aa.


ensembl_gene_id: BP2016
symbol: brfB
gene_biotype: protein_coding
description:
  Similar to Yersinia enterocolitica ferrichrome receptor FcuA, fcuA SW:FCUA_YEREN (Q05202) (758 aa) fasta scores: E(): 5.1e-99, 40.909% id in 726 aa and to Bordetella bronchiseptica putative ferric siderophore receptor BrfB, bfrB TR:P94265 (EMBL:U77671) (734 aa) fasta scores: E(): 0, 98.638% id in 734 aa. Show to be iron-regulated in Bordetella bronchiseptica.


ensembl_gene_id: BP2017
symbol: BP2017
gene_biotype: protein_coding
description:
  Putative haloacid-type dehydrogenase; Show weak similarity to Pseudomonas sp. 2-haloalkanoic acid dehalogenase I SW:HAD1_PSESP (P24069) (227 aa) fasta scores: E(): 2.4e-09, 28.821% id in 229 aa. Also similar to many haloacid-type hydrolases e.g. Pseudomonas aeruginosa probable haloacid dehalogenase PA0810 TR:Q9I5C9 (EMBL:AE004516) (233 aa) fasta scores: E(): 1.7e-35, 42.797% id in 236 aa.


ensembl_gene_id: BP2019
symbol: BP2019
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar in part to Rhizobium meliloti hypothetical transmembrane protein SMC00354 TR:CAC41711 (EMBL:AL591783) (221 aa) fasta scores: E(): 2.1e-09, 33.908% id in 174 aa and to other putative outer membrane proteins. Also similar to part of Escherichia coli outer membrane protein A OmpA, ompA SW:OMPA_ECOLI (P02934) (346 aa) fasta scores: E(): 2.4e-07, 40.860% id in 93 aa. May be truncated by the downstream insertion element.


ensembl_gene_id: BP2021
symbol: acnB
gene_biotype: protein_coding
description:
  Putative aconitate hydratase; Similar to many e.g. Escherichia coli aconitate hydratase 2 acnB or B0118 SW:ACO2_ECOLI (P36683) (865 aa) fasta scores: E(): 0, 72.885% id in 863 aa; Belongs to the aconitase/IPM isomerase family.


ensembl_gene_id: BP2022
symbol: BP2022
gene_biotype: protein_coding
description:
  Putative exonuclease; Similar to the N-terminal half of Bacillus subtilis DNA polymerase III PolC-type polC or dnaF or mutI SW:DPO3_BACSU (P13267) (1437 aa) fasta scores: E(): 3.7e-07, 33.918% id in 171 aa and to many other putative exonucleases e.g. Deinococcus radiodurans putative DNA polymerase III, epsilon subunit DR0856 TR:Q9RW13 (EMBL:AE001939) (197 aa) fasta scores: E(): 4.2e-14, 37.949% id in 195 aa.


ensembl_gene_id: BP2023
symbol: BP2023
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Mus musculus RS21-C6 TDRG-Tl1 TR:Q9QY93 (EMBL:AF110764) (170 aa) fasta scores: E(): 1.6e-15, 51.456% id in 103 aa and to other bacterial hypothetical proteins e.g. Pseudomonas aeruginosa hypothetical protein PA4789 TR:Q9HV19 (EMBL:AE004892) (101 aa) fasta scores: E(): 1.9e-09, 45.055% id in 91 aa.


ensembl_gene_id: BP2024
symbol: BP2024
gene_biotype: protein_coding
description:
  Similar to bacterial hypothetical proteins e.g. Bacillus subtilis hypothetical protein YczJ yczJ SW:YCZJ_BACSU (O31484) (95 aa) fasta scores: E(): 2.5e-09, 33.684% id in 95 aa and Deinococcus radiodurans conserved hypothetical protein DR1636 TR:Q9RTW6 (EMBL:AE002007) (122 aa) fasta scores: E(): 1e-08, 38.889% id in 90 aa.


ensembl_gene_id: BP2025
symbol: BP2025
gene_biotype: protein_coding
description:
  Similar to bacterial hypothetical proteins e.g. Rhizobium loti hypothetical protein MSR4226 TR:Q98EI5 (EMBL:AP003003) (98 aa) fasta scores: E(): 0.0081, 29.897% id in 97 aa.


ensembl_gene_id: BP2026
symbol: BP2026
gene_biotype: protein_coding
description:
  Similar to bacterial putative integral membrane proteins e.g. Caulobacter crescentus integral membrane protein CC3090 TR:Q9A3W1 (EMBL:AE005972) (300 aa) fasta scores: E(): 1.3e-58, 57.388% id in 291 aa and Pseudomonas aeruginosa hypothetical protein PA4779 TR:Q9HV29 (EMBL:AE004891) (297 aa) fasta scores: E(): 1.6e-36, 45.890% id in 292 aa.


ensembl_gene_id: BP2027
symbol: BP2027
gene_biotype: protein_coding
description:
  Shows weak similarity to many bacterial putative integral membrane proteins e.g. Escherichia coli O157:H7 hypothetical membrane protein ECS4801 TR:BAB38224 (EMBL:AP002567) (291 aa) fasta scores: E(): 4.4e-09, 28.235% id in 255 aa.


ensembl_gene_id: BP2030
symbol: BP2030
gene_biotype: protein_coding
description:
  Putative membrane protein (pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481. No significant database matches; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2031
symbol: BP2031
gene_biotype: protein_coding
description:
  Putative acyl-CoA transferase; Similar to many e.g. Pseudomonas aeruginosa coenzyme A transferase PsecoA, psecoA TR:O84911 (EMBL:AF010184) (497 aa) fasta scores: E(): 1.9e-121, 66.397% id in 494 aa.


ensembl_gene_id: BP2034
symbol: BP2034
gene_biotype: protein_coding
description:
  Putative transmembrane transport protein (pseudogene); 3 probable transmembrane helices predicted for BP2033 by TMHMM2.0 at aa 35-57, 67-85 and 98-120; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2036
symbol: BP2036
gene_biotype: protein_coding
description:
  Similar to many bacterial hypothetical proteins e.g. Escherichia coli hypothetical protein YchJ, ychJ SW:YCHJ_ECOLI (P37052) (152 aa) fasta scores: E(): 1.5e-11, 44.681% id in 94 aa. This CDS prediction starts at the first potential initiation codon. Most homologous CDS are predicted to start upstream of this position, therefore this CDS may be an N-terminally truncated pseudogene; Belongs to the UPF0225 family.


ensembl_gene_id: BP2037
symbol: BP2037
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many e.g. Rhizobium meliloti conserved hypothetical protein SMC00656 TR:CAC47295 (EMBL:AL591791) (93 aa) fasta scores: E(): 2.9e-08, 34.831% id in 89 aa, Pseudomonas aeruginosa hypothetical protein PA1749 TR:Q9I2Y8 (EMBL:AE004601) (161 aa) fasta scores: E(): 2.7e-07, 43.529% id in 85 aa and Streptomyces coelicolor conserved hypothetical protein SC8D11.19 TR:Q9AK00 (EMBL:AL512944) (102 aa) fasta scores: E(): 2e-06, 38.750% id in 80 aa.


ensembl_gene_id: BP2038
symbol: BP2038
gene_biotype: protein_coding
description:
  Putative hydroxlacyl-CoA dehydrogenase; Similar to Streptomyces coelicolor probable hydroxyacyl-CoA dehydrogenase SCBAC20F6.15 TR:Q53926 (EMBL:X62373) (307 aa) fasta scores: E(): 1.3e-37, 41.613% id in 310 aa and to many other putative hydroxyacyl-CoA dehydrogenases e.g. Pseudomonas aeruginosa probable 3-hydroxyacyl-CoA dehydrogenase PA5386 TR:Q9HTH8 (EMBL:AE004951) (321 aa) fasta scores: E(): 9e-48, 47.097% id in 310 aa.


ensembl_gene_id: BP2039
symbol: BP2039
gene_biotype: protein_coding
description:
  Putative amidase; Similar to e.g. Bradyrhizobium japonicum indoleacetamide hydrolase, bam SW:HYIN_BRAJA (P19922) (465 aa) fasta scores: E(): 8.3e-46, 40.849% id in 377 aa and many other putative amidases.


ensembl_gene_id: BP2041
symbol: proA
gene_biotype: protein_coding
description:
  Putative gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: BP2042
symbol: holA
gene_biotype: protein_coding
description:
  Similar to many e.g. Escherichia coli DNA polymerase III, delta subunit HolA, holA or b0640 SW:HOLA_ECOLI (P28630) (343 aa) fasta scores: E(): 3.1e-22, 31.677% id in 322 aa and to Neisseria meningitidis putative DNA polymerase III, delta subunit HolA, holA or NMA0913 TR:Q9JVB2 (EMBL:AL162754) (332 aa) fasta scores: E(): 5.7e-41, 42.478% id in 339 aa.


ensembl_gene_id: BP2043
symbol: lptE
gene_biotype: protein_coding
description:
  Putative lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.


ensembl_gene_id: BP2044
symbol: leuS
gene_biotype: protein_coding
description:
  leucyl-tRNA synthetase; Similar to many e.g. Pseudomonas aeruginosa leucyl-tRNA synthetase LeuS, leuS or PA3987 SW:SYL_PSEAE (Q9HX33) (873 aa) fasta scores: E(): 0, 59.775% id in 890 aa; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: BP2045
symbol: BP2045
gene_biotype: protein_coding
description:
  Similar to many putative transport proteins e.g. Escherichia coli O157:H7 putative transport protein ECS3543 TR:BAB36966 (EMBL:AP002562) (394 aa) fasta scores: E(): 2.3e-76, 58.115% id in 382 aa.


ensembl_gene_id: BP2046
symbol: BP2046
gene_biotype: protein_coding
description:
  Putative MarR-family transcriptional regulator; Similar to e.g. Erwinia chrysanthemi regulatory protein PecS, pecS SW:PECS_ERWCH (P42195) (166 aa) fasta scores: E(): 3e-17, 38.816% id in 152 aa and Streptomyces coelicolor putative MarR-family regulatory protein SC8E4A.17 TR:Q9L1Y8 (EMBL:AL138662) (172 aa) fasta scores: E(): 2.6e-25, 49.045% id in 157 aa.


ensembl_gene_id: BP2047
symbol: bph2
gene_biotype: protein_coding
description:
  Histone H1 homologue, DNA-binding protein Bph2, bph2 TR:P94344 (EMBL:U82555) (145 aa) fasta scores: E(): 2.2e-44, 100.000% id in 145 aa; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: BP2049
symbol: BP2049
gene_biotype: protein_coding
description:
  Putative sulfate transporter; Similar to e.g. Pseudomonas aeruginosa probable sulfate transporter PA0029 TR:Q9I7A1 (EMBL:AE004442) (517 aa) fasta scores: E(): 4e-48, 38.815% id in 523 aa and Stylosanthes hamata high affinity sulphate transporter 2 st2 SW:SUT2_STYHA (P53392) (662 aa) fasta scores: E(): 1.3e-33, 26.165% id in 558 aa.


ensembl_gene_id: BP2050
symbol: rpmG
gene_biotype: protein_coding
description:
  50S ribosomal protein L33; Similar to e.g. Escherichia coli and Salmonella typhimurium 50S ribosomal protein L33, rpmG or B3636 SW:RL33_ECOLI (P02436) (54 aa) fasta scores: E(): 1.9e-14, 75.926% id in 54 aa; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: BP2051
symbol: rpmB
gene_biotype: protein_coding
description:
  Similar to e.g. Escherichia coli 50S ribosomal protein L28, rpmB or B3637 SW:RL28_ECOLI (P02428) (77 aa) fasta scores: E(): 6.9e-21, 74.667% id in 75 aa; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: BP2052
symbol: BP2052
gene_biotype: protein_coding
description:
  Putative transmembrane transport protein; Similar to many e.g. Pseudomonas aeruginosa probable MFS transporter PA3573 TR:Q9HY47 (EMBL:AE004778) (392 aa) fasta scores: E(): 2.1e-54, 45.455% id in 396 aa; and Escherichia coli bicyclomycin resistance protein, bcr or b2182 SW:BCR_ECOLI (P28246) (396 aa) fasta scores: E():2.3e-39, 35.476% id in 389 aa.


ensembl_gene_id: BP2054
symbol: BP2054
gene_biotype: protein_coding
description:
  Putative cyclopropane-fatty-acyl-phospholipid synthase (pseudogene); Inverted repeat for IS481 element.


ensembl_gene_id: BP2055
symbol: BP2055
gene_biotype: protein_coding
description:
  Similar to many e.g. Escherichia coli glycine betaine-binding periplasmic protein, proX or proU or b2679 SW:PROX_ECOLI (P14177) (330 aa) fasta scores: E(): 4e-08, 24.096% id in 332 aa. Also similar to BP3572, 53.012% identity (53.659% ungapped) in 332 aa overlap.


ensembl_gene_id: BP2056
symbol: BP2056
gene_biotype: protein_coding
description:
  Similar to many e.g. Escherichia coli glycine betaine/L-proline transport system permease protein, proW or b2678 SW:PROW_ECOLI (P14176) (354 aa) fasta scores: E(): 1.4e-42, 47.566% id in 267 aa.


ensembl_gene_id: BP2057
symbol: BP2057
gene_biotype: protein_coding
description:
  Putative ABC-transporter ATP-binding protein; Similar to many e.g. Lactococcus lactis BusaA busaA TR:Q9RQ06 (EMBL:AF139575) (407 aa) fasta scores: E(): 1.8e-58, 47.783% id in 406 aa and to Salmonella typhimurium glycine betaine/L-proline transport ATP-binding protein ProV proV SW:PROV_SALTY (P17328) (400 aa) fasta scores: E(): 6.2e-58, 46.770% id in 387 aa.


ensembl_gene_id: BP2058
symbol: BP2058
gene_biotype: protein_coding
description:
  Putative tautomerase; Shows weak similarity over the N-terminal 60 residues to tautomerases e.g. Pseudomonas putida 4-oxalocrotonate tautomerase xylH SW:XYLH_PSEPU (Q01468) (62 aa) fasta scores: E(): 0.017, 33.333% id in 60 aa. Shows full-length similarity to putative tautomerases e.g. Pseudomonas pavonaceae putative tautomerase TR:Q9EV83 (EMBL:AJ290446) (130 aa) fasta scores: E(): 0.0049, 35.484% id in 124 aa and to hypothetical proteins.


ensembl_gene_id: BP2059
symbol: BP2059
gene_biotype: protein_coding
description:
  Putative thiolase; Similar to many thioloases e.g. Alcaligenes eutrophus beta-ketothiolase bktB TR:O68275 (EMBL:AF026544) (394 aa) fasta scores: E(): 3.1e-106, 75.897% id in 390 aa and Clostridium acetobutylicum acetyl-CoA acetyltransferase thl or CAC2873 SW:THL_CLOAB (P45359) (392 aa) fasta scores: E(): 8.6e-70, 52.051% id in 390 aa; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: BP2060
symbol: BP2060
gene_biotype: protein_coding
description:
  Similar to many hypothetical proteins e.g. Neisseria meningitidis putative transferase NMA1087 or NMB0869 TR:Q9JQL8 (EMBL:AL162755) (263 aa) fasta scores: E(): 1.5e-19, 32.432% id in 259 aa and Pseudomonas aeruginosa hypothetical protein PA2842 TR:Q9I001 (EMBL:AE004711) (249 aa) fasta scores: E(): 1.3e-06, 25.909% id in 220 aa.


ensembl_gene_id: BP2061
symbol: BP2061
gene_biotype: protein_coding
description:
  Similar to many putative transcriptional regulators e.g. Rhizobium meliloti putative transcriptional regulator SMB20773 TR:CAC49865 (EMBL:AL603647) (228 aa) fasta scores: E(): 6.7e-17, 38.350% id in 206 aa and Acinetobacter calcoaceticus putative transcriptional repressor MdcY mdcY TR:Q9F0Q8 (EMBL:AF209728) (224 aa) fasta scores: E(): 3.9e-15, 33.498% id in 203 aa.


ensembl_gene_id: BP2062
symbol: BP2062
gene_biotype: protein_coding
description:
  Similar to e.g. Rhizobium leguminosarum malonyl-CoA decarboxylase matA TR:Q9ZIP6 (EMBL:AF117694) (462 aa) fasta scores: E(): 4.7e-36, 46.012% id in 326 aa and Homo sapiens malonyl-CoA decarboxylase, mitochondrial precursor mlycD SW:DCMC_HUMAN (O95822) (493 aa) fasta scores: E(): 2.3e-28, 35.714% id in 434 aa.


ensembl_gene_id: BP2063
symbol: BP2063
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many enoyl-CoA hydratase family proteins e.g. Streptomyces coelicolor putative enoyl CoA hydratase SC5f2A.31C TR:Q9X7Q4 (EMBL:AL049587) (257 aa) fasta scores: E(): 6.3e-22, 37.121% id in 264 aa. Not similar enough to experimentally characterised proteins to suggest function.


ensembl_gene_id: BP2067
symbol: BP2067
gene_biotype: protein_coding
description:
  Putative superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.


ensembl_gene_id: BP2068
symbol: BP2068
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to many hypothetical proteins e.g. Pseudomonas aeruginosa hypothetical protein PA3836 TR:Q9HXG8 (EMBL:AE004801) (325 aa) fasta scores: E(): 1.9e-83, 76.543% id in 324 aa.


ensembl_gene_id: BP2070
symbol: BP2070
gene_biotype: protein_coding
description:
  Putative transmembrane component of ABC transporter (pseudogene); 7 probable transmembrane helices predicted for BP2069 by TMHMM2.0 at aa 13-35, 42-61, 85-107, 133-155, 165-184, 189-208 and 223-240.


ensembl_gene_id: BP2071
symbol: BP2071
gene_biotype: protein_coding
description:
  Putative molybdenum-binding protein; Similar to Azotobacter vinelandii molybdenum transport protein ModA SW:MODA_AZOVI (P37733) (270 aa) fasta scores: E(): 3e-33, 46.341% id in 246 aa and Rhodobacter capsulatus molybdenum-pterin binding protein MopA SW:MOPA_RHOCA (Q08385) (265 aa) fasta scores: E(): 7.6e-27, 42.308% id in 260 aa.


ensembl_gene_id: BP2072
symbol: BP2072
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Pseudomonas aeruginosa hypothetical protein PA4793 TR:Q9HV15 (EMBL:AE004892) (187 aa) fasta scores: E(): 4.2e-06, 27.374% id in 179 aa.


ensembl_gene_id: BP2073
symbol: BP2073
gene_biotype: protein_coding
description:
  Similar to hypothetical proteins e.g. Rhizobium loti hypothetical protein MLR2398 TR:Q98IH7 (EMBL:AP002999) (390 aa) fasta scores: E(): 7.7e-67, 52.660% id in 376 aa.


ensembl_gene_id: BP2074
symbol: BP2074
gene_biotype: protein_coding
description:
  Putative DNA-binding protein; Similar to the C-termini of two-component response regulators e.g. Rhodobacter sphaeroides DmsR dmsR TR:O32479 (EMBL:D89075) (232 aa) fasta scores: E(): 1.9e-05, 36.842% id in 114 aa. Possibly a pseudogene.


ensembl_gene_id: BP2075
symbol: BP2075
gene_biotype: protein_coding
description:
  Putative efflux system inner membrane protein; Similar to e.g. Escherichia coli acriflavine resistance protein E precursor acrE or envC or b3265 SW:ACRE_ECOLI (P24180) (385 aa) fasta scores: E(): 1.4e-43, 47.684% id in 367 aa and Neisseria gonorrhoeae membrane fusion protein MtrC precursor mtrC SW:MTRC_NEIGO (P43505) (412 aa) fasta scores: E(): 2.5e-37, 41.304% id in 414 aa. Probably attached to inner membrane; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: BP2076
symbol: BP2076
gene_biotype: protein_coding
description:
  Putative efflux system transmembrane protein; Similar to e.g. Escherichia coli acriflavine resistance protein B acrB or acrE or b0462 SW:ACRB_ECOLI (P31224) (1049 aa) fasta scores: E(): 3.1e-201, 52.073% id in 1037 aa and Neisseria gonorrhoeae rnd protein MtrD mtrD TR:Q51073 (EMBL:U60099) (1067 aa) fasta scores: E(): 3e-174, 51.873% id in 1068 aa.


ensembl_gene_id: BP2078
symbol: pdxJ
gene_biotype: protein_coding
description:
  Putative efflux system outer membrane component (Pseudogene); Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: BP2079
symbol: acpS
gene_biotype: protein_coding
description:
  Putative holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: BP2080
symbol: nagZ
gene_biotype: protein_coding
description:
  Putative beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.


ensembl_gene_id: BP2081
symbol: uvrC
gene_biotype: protein_coding
description:
  Putative excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: BP2082
symbol: pgsA
gene_biotype: protein_coding
description:
  Similar to many e.g. Escherichia coli CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase pgsA or b1912 SW:PGSA_ECOLI (P06978) (181 aa) fasta scores: E(): 7.1e-27, 50.276% id in 181 aa; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: BP2084
symbol: queF
gene_biotype: protein_coding
description:
  Putative transmembrane transport protein (pseudogene); Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).


ensembl_gene_id: BP2085
symbol: aceA
gene_biotype: protein_coding
description:
  Putative isocitrate lyase; Similar to many e.g. Escherichia coli isocitrate lyase aceA or b4015 SW:ACEA_ECOLI (P05313) (434 aa) fasta scores: E(): 9.8e-123, 70.805% id in 435 aa.


ensembl_gene_id: BP2086
symbol: BP2086
gene_biotype: protein_coding
description:
  Putative membrane protein; Unknown function. C-terminus has been interrupted by an insertion element.


ensembl_gene_id: BP2089
symbol: BP2089
gene_biotype: protein_coding
description:
  Putative ABC-transporter permease component (pseudogene); Signal peptide predicted for BP2088 by SignalP 2.0 HMM (Signal peptide probabilty 0.999) with cleavage site probability 0.795 between residues 42 and 43; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: BP2090
symbol: BP2090
gene_biotype: protein_coding
description:
  Similar to many ABC-transporter substrate-binding proteins e.g. Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor braC or PA1074 SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): 2.2e-09, 25.360% id in 347 aa.


ensembl_gene_id: BP2091
symbol: BP2091
gene_biotype: protein_coding
description:
  Similar to many dioxygenase components e.g. Pseudomonas putida large subunit of terminal dioxygenase tdnA1 TR:P95531 (EMBL:D85415) (448 aa) fasta scores: E(): 9.9e-42, 34.954% id in 432 aa, and Pseudomonas putida toluate 1,2-dioxygenase alpha subunit xylX SW:XYLX_PSEPU (P23099) (454 aa) fasta scores: E(): 1.1e-32, 31.720% id in 372 aa.


ensembl_gene_id: BP2092
symbol: BP2092
gene_biotype: protein_coding
description:
  Putative dioxygenase component; Similar to many e.g. Pseudomonas putida p-cumate dioxygenase small subunit cmtAc TR:Q51975 (EMBL:U24215) (180 aa) fasta scores: E(): 3.1e-10, 27.647% id in 170 aa and Pseudomonas putida toluate 1,2-dioxygenase beta subunit xylY SW:XYLY_PSEPU (P23100) (162 aa) fasta scores: E(): 1.7e-05, 33.696% id in 92 aa.


ensembl_gene_id: BP2093
symbol: BP2093
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase/isomerase-like protein; Similar to many e.g. Streptomyces collinus 2-cyclohexenylcarbonyl CoA isomerase chcB TR:Q9L4S8 (EMBL:AF268489) (269 aa) fasta scores: E(): 9e-18, 34.100% id in 261 aa and Rhodopseudomonas palustris cyclohex-1-ene-1-carboxyl-CoA hydratase badK TR:O07453 (EMBL:U75363) (258 aa) fasta scores: E(): 1.5e-17, 34.340% id in 265 aa.


ensembl_gene_id: BP2094
symbol: BP2094
gene_biotype: protein_coding
description:
  Putative 3-oxoacyl-CoA or-ACP reductase; Similar to many e.g. Zoogloea ramigera acetoacetyl-CoA reductase phbB SW:PHBB_ZOORA (P23238) (241 aa) fasta scores: E(): 1.7e-24, 41.494% id in 241 aa and to Vibrio cholerae 3-oxoacyl-[acyl-carrier protein] reductase fabG or VC2021 SW:FABG_VIBCH (Q9KQH7) (244 aa) fasta scores: E(): 2.4e-23, 41.176% id in 238 aa.


ensembl_gene_id: BP2095
symbol: BP2095
gene_biotype: protein_coding
description:
  Putative ferredoxin; Similar to many e.g. Caulobacter crescentus ferredoxin, 2fe-2s fdxB or fdxP or CC3524 SW:FER2_CAUCR (P37098) (106 aa) fasta scores: E(): 1.6e-17, 50.495% id in 101 aa.


ensembl_gene_id: BP2096
symbol: BP2096
gene_biotype: protein_coding
description:
  Putative fatty-acyl-CoA racemase; Similar to many e.g. Rattus norvegicus alpha-methylacyl-CoA racemase AMACR SW:AMAC_RAT (P70473) (381 aa) fasta scores: E(): 8.3e-53, 44.416% id in 385 aa and Streptomyces coelicolor putative racemase SC5F2A.13 TR:Q9X7N6 (EMBL:AL049587) (398 aa) fasta scores: E(): 9.4e-68, 51.697% id in 383 aa; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP2097
symbol: BP2097
gene_biotype: protein_coding
description:
  Putative esterase; Similar to e.g. Streptomyces hygroscopicus acetyl-hydrolase bah SW:BAH_STRHY (Q01109) (299 aa) fasta scores: E(): 1.2e-24, 39.912% id in 228 aa and to Bordetella pertussis hypothetical protein TR:O30449 (EMBL:AF006000) (324 aa) fasta scores: E(): 4.6e-27, 39.502% id in 281 aa.


ensembl_gene_id: BP2098
symbol: BP2098
gene_biotype: protein_coding
description:
  Putative acyl-CoA ligase; Similar to Azoarcus evansii aerobic phenylacetate-CoA ligase paaK or pacD TR:Q9L9C1 (EMBL:AF176259) (440 aa) fasta scores: E(): 2.1e-39, 33.710% id in 442 aa and Escherichia coli phenylacetate-CoA ligase paaK or b1398 SW:PAAK_ECOLI (P76085) (437 aa) fasta scores: E(): 1.3e-35, 31.735% id in 438 aa.


ensembl_gene_id: BP2099
symbol: BP2099
gene_biotype: protein_coding
description:
  Similar to many putative thiolases e.g. Caulobacter crescentus thiolase family protein CC1432 TR:Q9A8C2 (EMBL:AE005818) (400 aa) fasta scores: E(): 1.5e-111, 67.929% id in 396 aa; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: BP2100
symbol: BP2100
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hypothetical protein CC1431 TR:Q9A8C3 (EMBL:AE005818) (488 aa) fasta scores: E(): 3e-65, 44.136% id in 469 aa.


ensembl_gene_id: BP2102
symbol: BP2102
gene_biotype: protein_coding
description:
  Hypothetical protein (pseudogene); (TG)2 in pertussis; (TG)1 in parapertussis and bronchiseptica; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2103
symbol: BP2103
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to many hypothetical proteins e.g. Rhizobium meliloti conserved hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.4e-41, 40.694% id in 317 aa.


ensembl_gene_id: BP2106
symbol: BP2106
gene_biotype: protein_coding
description:
  Similar to hypothetical proteins e.g. Pseudomonas aeruginosa hypothetical protein PA3338 TR:Q9HYQ7 (EMBL:AE004756) (96 aa) fasta scores: E(): 3.1e-25, 70.213% id in 94 aa and Rhizobium loti hypothetical protein Mll3944 TR:Q98F45 (EMBL:AP003003) (115 aa) fasta scores: E(): 3.6e-23, 72.414% id in 87 aa.


ensembl_gene_id: BP2107
symbol: BP2107
gene_biotype: protein_coding
description:
  Similar to hypothetical proteins e.g. Caulobacter crescentus hypothetical protein CC3056 TR:Q9A3Z4 (EMBL:AE005969) (137 aa) fasta scores: E(): 6.6e-14, 43.590% id in 117 aa.


ensembl_gene_id: BP2108
symbol: BP2108
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to hypothetical proteins e.g. Pseudomonas aeruginosa hypothetical protein PA2662 TR:Q9I0H6 (EMBL:AE004695) (397 aa) fasta scores: E(): 7.8e-34, 39.747% id in 395 aa.


ensembl_gene_id: BP2109
symbol: BP2109
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to hypothetical proteins e.g. Neisseria meningitidis hypothetical protein NMB0013 TR:Q9K1Q7 (EMBL:AE002359) (149 aa) fasta scores: E(): 2.4e-16, 44.444% id in 144 aa and Helicobacter pylori J99 hypothetical protein JHP1395 TR:Q9ZJB8 (EMBL:AE001561) (145 aa) fasta scores: E(): 9.7e-09, 33.333% id in 144 aa.


ensembl_gene_id: BP2110
symbol: BP2110
gene_biotype: protein_coding
description:
  Similar to many e.g. Escherichia coli exodeoxyribonuclease III xthA or b1749 SW:EX3_ECOLI (P09030) (268 aa) fasta scores: E(): 1.2e-18, 36.842% id in 266 aa and Neisseria meningitidis putative exodeoxyribonuclease III NMA2086 TR:Q9JSY0 (EMBL:AL162758) (256 aa) fasta scores: E(): 2.4e-47, 50.382% id in 262 aa. It should be noted that at least one protein in this family, Pseudomonas aeruginosa crc or PA5332, TR:Q51380 (EMBL:U38241), appears to have no exonuclease activity and is unable to complement DNA-repair deficient E. coli.


ensembl_gene_id: BP2111
symbol: BP2111
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.


ensembl_gene_id: BP2112
symbol: BP2112
gene_biotype: protein_coding
description:
  Putative oxidoreductase; The methionine start codon of this CDS is substituted with a threonine. Similar to Escherichia coli oxidoreductase UcpA or B2426 SWALL:UCPA_ECOLI (SWALL:P37440) (263 aa) fasta scores: E(): 3.7e-23, 39.84% id in 256 aa, and to Rhizobium sp putative short-chain type dehydrogenase/reductase Y4lA SWALL:Y4LA_RHISN (SWALL:P55541) (278 aa) fasta scores: E(): 2.9e-25, 37.84% id in 251 aa.


ensembl_gene_id: BP2115
symbol: BP2115
gene_biotype: protein_coding
description:
  Similar to hypothetical proteins e.g. Helicobacter pylori J99 hypothetical protein JHP0295 TR:Q9ZMC6 (EMBL:AE001466) (293 aa) fasta scores: E(): 2.6e-24, 36.8% id in 288 aa and Yersinia pseudotuberculosis hypothetical protein TR:Q9X9F8 (EMBL:AJ236887) (293 aa) fasta scores: E(): 8.9e-20, 37.5% id in 288 aa.


ensembl_gene_id: BP2116
symbol: BP2116
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to hypothetical proteins e.g. Rhizobium meliloti conserved hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.1e-40, 38.26% id in 311 aa and Bordetella pertussis hypothetical kDa protein SW:YBR5_BORPE (O30446) (323 aa) fasta scores: E(): 2e-28, 32.82% id in 326 aa.


ensembl_gene_id: BP2120
symbol: gor
gene_biotype: protein_coding
description:
  Glutathione reductase; Similar to e.g. Pseudomonas aeruginosa glutathione reductase Gor or PA2025 SW:GSHR_PSEAE (P23189) (451 aa) fasta scores: E(): 1.6e-143, 80.44% id in 450 aa, and to Escherichia coli glutathione reductase Gor or b3500 SWALL:GSHR_ECOLI (SWALL:P06715) (450 aa) fasta scores: E(): 2.1e-67, 45.11% id in 450 aa.


ensembl_gene_id: BP2124
symbol: aroG
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive (pseudogene); (GAGG)2 in pertussis; (GAGG)1 in parapertussis and bronchiseptica.


ensembl_gene_id: BP2125
symbol: BP2125
gene_biotype: protein_coding
description:
  Similar to many putative transcriptional regulators e.g. Rhizobium meliloti putative gstR-like transcriptional regulator protein TR:CAC48407 (EMBL:AL603642) (301 aa) fasta scores: E(): 4e-44, 43.47% id in 299 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2125A
symbol: BP2125A
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa1969 TR:Q9I2D5 (EMBL:AE004623) (130 aa) fasta scores: E()=4.5e-06, 38.18% id in 110 aa.


ensembl_gene_id: BP2126
symbol: BP2126
gene_biotype: protein_coding
description:
  Putative oxidoreductase subunit; Similar to e.g. Brevundimonas diminuta isoquinoline 1-oxidoreductase alpha subunit iorA SW:IORA_BREDI (Q51697) (152 aa) fasta scores: E(): 1.3e-27, 50.98% id in 153 aa and Pseudomonas aeruginosa probable oxidoreductase PA1881 TR:Q9I2L6 (EMBL:AE004614) (153 aa) fasta scores: E(): 6.1e-37, 65.13% id in 152 aa.


ensembl_gene_id: BP2127
symbol: BP2127
gene_biotype: protein_coding
description:
  Putative exported oxidoreductase subunit; Similar to e.g. Brevundimonas diminuta isoquinoline 1-oxidoreductase beta subunit iorB SW:IORB_BREDI (Q51698) (781 aa) fasta scores: E(): 4e-16, 34.58% id in 775 aa and Rhizobium meliloti putative aldehyde dehydrogenase protein SMB20342 TR:CAC48728 (EMBL:AL603643) (737 aa) fasta scores: E(): 1.4e-92, 50% id in 746 aa.


ensembl_gene_id: BP2128
symbol: BP2128
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many e.g. Pseudomonas aeruginosa hypothetical protein PA4618 TR:Q9HVH3 (EMBL:AE004876) (323 aa) fasta scores: E(): 2.4e-34, 37.72% id in 326 aa. Also similar to BP0576, 50.893% identity (53.271% ungapped) in 336 aa overlap.


ensembl_gene_id: BP2129
symbol: BP2129
gene_biotype: protein_coding
description:
  Similar to many putative transcriptional regulators e.g. Pseudomonas aeruginosa probable transcriptional regulator PA2047 TR:Q9I268 (EMBL:AE004631) (329 aa) fasta scores: E(): 7.8e-55, 55.47% id in 292 aa.


ensembl_gene_id: BP2130
symbol: BP2130
gene_biotype: protein_coding
description:
  Similar to Xanthomonas axonopodis hypothetical protein Xac2490 SWALL:AAM37341 (EMBL:AE011886) (294 aa) fasta scores: E(): 1.3e-28, 54.26% id in 293 aa, and to Xanthomonas campestris hypothetical protein Xcc2358 SWALL:AAM41636 (EMBL:AE012344) (364 aa) fasta scores: E(): 7.3e-28, 52.74% id in 292 aa.


ensembl_gene_id: BP2131
symbol: BP2131
gene_biotype: protein_coding
description:
  Similar to hypothetical proteins e.g. Pseudomonas aeruginosa hypothetical protein PA4012 TR:Q9HX15 (EMBL:AE004818) (197 aa) fasta scores: E(): 5.1e-10, 32.97% id in 188 aa.


ensembl_gene_id: BP2132
symbol: BP2132
gene_biotype: protein_coding
description:
  Similar to hypothetical proteins e.g. Pseudomonas aeruginosa hypothetical protein PA1353 TR:Q9I3Z1 (EMBL:AE004565) (137 aa) fasta scores: E(): 6.3e-21, 47.69% id in 130 aa.


ensembl_gene_id: BP2133
symbol: BP2133
gene_biotype: protein_coding
description:
  Putative transmembrane efflux protein; Similar to many e.g. Streptomyces lavendulae mitomycin C translocase mct TR:Q9WVV3 (EMBL:AF127374) (484 aa) fasta scores: E(): 8.6e-53, 41.7% id in 470 aa and Streptomyces lipmanii puromycin resistance protein Pur8 SW:PUR8_STRLP (P42670) (503 aa) fasta scores: E(): 7.2e-49, 40.51% id in 464 aa; Belongs to the major facilitator superfamily.


ensembl_gene_id: BP2134
symbol: BP2134
gene_biotype: protein_coding
description:
  Similar to hypothetical proteins e.g. Agrobacterium tumefaciens hypothetical protein TR:AAK88141 (EMBL:AE008154) (118 aa) fasta scores: E(): 2.1e-19, 42.98% id in 114 aa and Arabidopsis thaliana hypothetical protein F2K13_90 TR:Q9LFK7 (EMBL:AL391141) (135 aa) fasta scores: E(): 8.5e-11, 33.04% id in 115 aa.


ensembl_gene_id: BP2138
symbol: BP2138
gene_biotype: protein_coding
description:
  Similar to ABC-transporter ATP-binding components e.g. Vibrio cholerae putative toxin secretion transporter VC1446 TR:Q9KS15 (EMBL:AE004223) (721 aa) fasta scores: E(): 3.2e-44, 32.58% id in 577 aa.


ensembl_gene_id: BP2140
symbol: BP2140
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to e.g. Pseudomonas aeruginosa hypothetical protein PA4467 TR:Q9HVV1 (EMBL:AE004860) (310 aa) fasta scores: E(): 6.6e-31, 48.42% id in 254 aa and Myxococcus xanthus GufA protein gufA SW:GUFA_MYXXA (Q06916) (254 aa) fasta scores: E(): 9.6e-28, 43.65% id in 252 aa. Also similar to BP0194, 47.458% identity (47.782% ungapped) in 295 aa overlap.


ensembl_gene_id: BP2142
symbol: BP2142
gene_biotype: protein_coding
description:
  Similar to many e.g. Rhizobium meliloti putative transcription regulator protein SMC02425 TR:CAC47179 (EMBL:AL591791) (225 aa) fasta scores: E(): 9.6e-26, 36.6% id in 224 aa.


ensembl_gene_id: BP2143
symbol: BP2143
gene_biotype: protein_coding
description:
  Putative sulfate transporter; Similar to many e.g. Vibrio cholerae sulfate permease family protein VCA0077 TR:Q9KN88 (EMBL:AE004350) (553 aa) fasta scores: E(): 1.8e-139, 68.14% id in 540 aa.


ensembl_gene_id: BP2144
symbol: BP2144
gene_biotype: protein_coding
description:
  Similar to Agrobacterium tumefaciens hypothetical protein AGR_C_3685P TR:AAK87787 (EMBL:AE008120) (182 aa) fasta scores: E(): 2e-21, 37.83% id in 185 aa and Rhizobium meliloti hypothetical protein SMA0191 TR:AAK64759 (EMBL:AE007204) (176 aa) fasta scores: E(): 1.3e-19, 42.19% id in 173 aa.


ensembl_gene_id: BP2145
symbol: BP2145
gene_biotype: protein_coding
description:
  Putative ArsR-family transcriptional regulator; Similar to many e.g. Agrobacterium tumefaciens hypothetical protein AGR_C_3686P TR:AAK87788 (EMBL:AE008120) (142 aa) fasta scores: E(): 1.1e-21, 51.66% id in 120 aa. Also similar to BP3466, 43.137% identity (43.137% ungapped) in 102 aa overlap.


ensembl_gene_id: BP2146
symbol: BP2146
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar, except at the N-terminus, to Deinococcus radiodurans hydrolase-related protein DR1403 TR:Q9RUI3 (EMBL:AE001985) (277 aa) fasta scores: E(): 3.7e-37, 45.57% id in 237 aa.


ensembl_gene_id: BP2147
symbol: BP2147
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to e.g. Neisseria meningitidis hypothetical protein NMB0783 TR:Q9K039 (EMBL:AE002432) (159 aa) fasta scores: E(): 5.5e-15, 44.65% id in 159 aa and Haemophilus ducreyi hypothetical protein TR:Q9L7U8 (EMBL:AF219260) (149 aa) fasta scores: E(): 4.2e-11, 39.66% id in 121 aa.


ensembl_gene_id: BP2148
symbol: BP2148
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti hypothetical protein MSR0042 TR:Q98NP7 (EMBL:AP002994) (62 aa) fasta scores: E(): 1.2e-11, 67.79% id in 59 aa.


ensembl_gene_id: BP2149
symbol: BP2149
gene_biotype: protein_coding
description:
  Putative araC-family transcriptional regulator; Similar to many e.g. Agrobacterium tumefaciens AGR_PAT_562P TR:AAK90764 (EMBL:AE007908) (340 aa) fasta scores: E(): 7e-25, 32.45% id in 265 aa.


ensembl_gene_id: BP2150
symbol: BP2150
gene_biotype: protein_coding
description:
  Similar to e.g. Rhizobium meliloti conserved hypothetical protein SMC01560 TR:CAC46890 (EMBL:AL591790) (117 aa) fasta scores: E(): 8.1e-22, 52.17% id in 115 aa and Escherichia coli hypothetical protein ybaA or b0456 SW:YBAA_ECOLI (P09161) (117 aa) fasta scores: E(): 4.3e-18, 46.95% id in 115 aa.


ensembl_gene_id: BP2151
symbol: BP2151
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to e.g. Streptomyces coelicolor putative oxidoreductase SCF55.14 TR:Q9RJQ0 (EMBL:AL132991) (289 aa) fasta scores: E(): 1.4e-35, 46.12% id in 284 aa and Pseudomonas chlororaphis phenazine biosynthesis protein PhzF phzF or phzC SW:PHZF_PSECL (Q51520) (278 aa) fasta scores: E(): 1.4e-12, 31.78% id in 280 aa.


ensembl_gene_id: BP2152
symbol: BP2152
gene_biotype: protein_coding
description:
  Putative lysR-family transcriptional regulator; Similar to many e.g. Burkholderia cepacia 2,2-dialkylglycine decarboxylase repressor protein dgdR SW:DGDR_BURCE (P16931) (293 aa) fasta scores: E(): 4e-24, 32.62% id in 282 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2153
symbol: BP2153
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to e.g. Xylella fastidiosa hypothetical protein Xf1278 TR:Q9PDV1 (EMBL:AE003961) (451 aa) fasta scores: E(): 9.3e-87, 56.77% id in 421 aa and Escherichia coli hypothetical protein YjiN yjiN or b4336 SW:YJIN_ECOLI (P39385) (426 aa) fasta scores: E(): 1.1e-42, 36.69% id in 417 aa.


ensembl_gene_id: BP2156
symbol: BP2156
gene_biotype: protein_coding
description:
  Putative LysR-family transcriptional regulator (pseudogene); Predicted helix-turn-helix motif with score 1608 (+4.66 SD) at aa 29-50, sequence LSFKGAAAELHVTPTAVSHQIR.


ensembl_gene_id: BP2157
symbol: acoD
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase; Similar to Alcaligenes eutrophus acetaldehyde dehydrogenase II AcoD SW:DHA2_ALCEU (P46368) (506 aa) fasta scores: E(): 1.1e-155, 74.65% id in 509 aa.


ensembl_gene_id: BP2158
symbol: BP2158
gene_biotype: protein_coding
description:
  Similar to Yersinia pseudotuberculosis putative transcriptional regulator TR:Q9AGD7 (EMBL:AF335466) (614 aa) fasta scores: E(): 1.1e-60, 39.49% id in 628 aa, and to Alcaligenes eutrophus acetoin catabolism regulatory protein acoR SW:ACOR_ALCEU (P28614) (668 aa) fasta scores: E(): 1e-36, 37.26% id in 628 aa.


ensembl_gene_id: BP2161
symbol: BP2161
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); In-frame TAG stop codon in pertussis; TGG in parapertussis and bronchiseptica.


ensembl_gene_id: BP2162
symbol: bioD
gene_biotype: protein_coding
description:
  Putative biotin synthesis protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: BP2163
symbol: BP2163
gene_biotype: protein_coding
description:
  Hypothetical protein; Weakly similar to predicted hydrolases eg. Streptomyces coelicolor putative hydrolase SCE87.22C TR:Q9RKB6 (EMBL:AL132674) (314 aa) fasta scores: E(): 0.017, 30.62% id in 258 aa, and to Streptomyces peucetius 10-carbomethoxy-13-deoxycarminomycin esterase DnrP TR:Q54809 (EMBL:L40425) (298 aa) fasta scores: E(): 2.8, 31.25% id in 112 aa.


ensembl_gene_id: BP2164
symbol: bioF
gene_biotype: protein_coding
description:
  Putative 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.


ensembl_gene_id: BP2165
symbol: bioA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA or b0774 SW:BIOA_ECOLI (P12995) (429 aa) fasta scores: E(): 2.1e-77, 50.48% id in 414 aa, and to Caulobacter crescentus adenosylmethionine-8-amino-7-oxononanoate aminotransferase cc1577 TR:Q9A7Z0 (EMBL:AE005832) (400 aa) fasta scores: E(): 2.6e-99, 64.48% id in 397 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: BP2167
symbol: BP2167
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to Vibrio cholerae cation transport ATPase, E1-E2 family VC1437 TR:Q9KS24 (EMBL:AE004222) (790 aa) fasta scores: E(): 5.4e-11, 29.43% id in 316 aa, and to Pseudomonas aeruginosa probable cation-transporting p-type ATPase PA1549 TR:Q9I3G8 (EMBL:AE004583) (811 aa) fasta scores: E(): 9.6e-11, 39.24% id in 158 aa.


ensembl_gene_id: BP2168
symbol: BP2168
gene_biotype: protein_coding
description:
  Putative outer membrane protein; Similar to Neisseria meningitidis (serogroup A), and putative inner membrane protein NMA1716 or NMB1516 TR:Q9JR08 (EMBL:AL162756) (62 aa) fasta scores: E(): 0.0012, 36.17% id in 47 aa, and to Caulobacter crescentus cytochrome oxidase maturation protein, cbb3-type cc1408 TR:Q9A8E6 (EMBL:AE005815) (55 aa) fasta scores: E(): 0.68, 36.95% id in 46 aa.


ensembl_gene_id: BP2170
symbol: BP2170
gene_biotype: protein_coding
description:
  Probable cytochrome C oxidase subunit (Pseudogene); (C)1 in pertussis; (C)2 in parapertussis and bronchiseptica.


ensembl_gene_id: BP2171
symbol: BP2171
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae cytochrome C oxidase, subunit CcoQ VC1440 TR:Q9KS21 (EMBL:AE004222) (54 aa) fasta scores: E(): 0.25, 34.78% id in 46 aa.


ensembl_gene_id: BP2172
symbol: BP2172
gene_biotype: protein_coding
description:
  Putative cytochrome C oxidase subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.


ensembl_gene_id: BP2173
symbol: BP2173
gene_biotype: protein_coding
description:
  Similar to many predicted ferredoxins eg. Neisseria meningitidis putative ferredoxin NMA1668 TR:Q9JTR2 (EMBL:AL162756) (498 aa) fasta scores: E(): 2.7e-76, 44.93% id in 494 aa.


ensembl_gene_id: BP2174
symbol: BP2174
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Ralstonia solanacearum probable lipoprotein SWALL:Q8XZW4 (EMBL:AL646063) Rsc1281 or Rs02794; length 76 aa; id=54.34%; ungapped id=56.81%; E()=3.4e-05; 46 aa overlap; query 1-45 aa; subject 24-68 aa.


ensembl_gene_id: BP2177
symbol: BP2177
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti conserved hypothetical protein SMC00230 TR:CAC46234 (EMBL:AL591788) (165 aa) fasta scores: E(): 3.6e-31, 56.09% id in 164 aa, and to Pseudomonas aeruginosa hypothetical protein PA0711 TR:Q9I5L7 (EMBL:AE004506) (168 aa) fasta scores: E(): 7.7e-27, 52.46% id in 162 aa.


ensembl_gene_id: BP2178
symbol: BP2178
gene_biotype: protein_coding
description:
  Similar to many eg. Caulobacter crescentus ABC transporter, ATP-binding protein CC3373 TR:Q9A333 (EMBL:AE005998) (314 aa) fasta scores: E(): 4.8e-77, 77.12% id in 306 aa.


ensembl_gene_id: BP2179
symbol: BP2179
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus ABC-2 type transporter, putative cc3372 TR:Q9A334 (EMBL:AE005998) (253 aa) fasta scores: E(): 1.6e-69, 75.79% id in 252 aa.


ensembl_gene_id: BP2180
symbol: BP2180
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many eg. Rhizobium meliloti conserved hypothetical protein sma0665 TR:AAK65009 (EMBL:AE007226) (413 aa) fasta scores: E(): 9.9e-38, 38.28% id in 350 aa, and to Escherichia coli hypothetical protein ydik or b1688 SW:YDIK_ECOLI (P77175) (370 aa) fasta scores: E(): 9.4e-27, 28.85% id in 350 aa.


ensembl_gene_id: BP2184
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor 70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: BP2185
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: BP2186
symbol: rpsU
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 30S ribosomal protein S21 RpsU or B3065 or Z4418 or Ecs3948 SW:RS21_ECOLI (P02379) (70 aa) fasta scores: E(): 9.2e-14, 60% id in 70 aa, and to Neisseria meningitidis 30S ribosomal protein S21 RpsU or NMA0502 or NMB1950 SW:RS21_NEIMA (Q9JRG3) (70 aa) fasta scores: E(): 7.4e-20, 77.14% id in 70 aa; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: BP2187
symbol: BP2187
gene_biotype: protein_coding
description:
  Putative transferase; Similar to Archaeoglobus fulgidus xanthine-guanine phosphoribosyltransferase AF0239 TR:O30000 (EMBL:AE001089) (194 aa) fasta scores: E(): 1e-09, 31.81% id in 154 aa.


ensembl_gene_id: BP2188
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: BP2189
symbol: hisZ
gene_biotype: protein_coding
description:
  Putative tRNA synthetase; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.


ensembl_gene_id: BP2192
symbol: hflX
gene_biotype: protein_coding
description:
  Putative GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: BP2193
symbol: hfq
gene_biotype: protein_coding
description:
  Putative RNA-binding regulatory protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: BP2194
symbol: his1
gene_biotype: protein_coding
description:
  Similar to Acetobacter pasteurianus histidinol-phosphate aminotransferase HisC or His1 SW:HIS8_ACEPA (P45358) (356 aa) fasta scores: E(): 6.2e-79, 59.6% id in 354 aa. Similar to BP3769 (34.118% identity in 340 aa overlap); Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: BP2195
symbol: der
gene_biotype: protein_coding
description:
  Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: BP2196
symbol: bamB
gene_biotype: protein_coding
description:
  Putative quinoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: BP2197
symbol: BP2197
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis putative membrane protein NMA1064 TR:Q9JV00 (EMBL:AL162755) (209 aa) fasta scores: E(): 4.8e-16, 35.07% id in 211 aa.


ensembl_gene_id: BP2198
symbol: hisS
gene_biotype: protein_coding
description:
  Similar to Escherichia coli and histidyl-tRNA synthetase HisS or b2514 or z3777 or ecs3376 SW:SYH_ECOLI (P04804) (423 aa) fasta scores: E(): 3.1e-88, 55.89% id in 424 aa.


ensembl_gene_id: BP2199
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: BP2201
symbol: rlmN
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: BP2202
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: BP2203
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: BP2204
symbol: BP2204
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus putative outer membrane protein Cc0351 precursor SW:Y351_CAUCR (Q9AB80) (254 aa) fasta scores: E(): 5.8e-12, 29.38% id in 245 aa, and to Escherichia coli mlta-interacting protein precursor MipA or b1782 SW:MIPA_ECOLI (P77486) (248 aa) fasta scores: E(): 3e-07, 27.64% id in 246 aa.


ensembl_gene_id: BP2206
symbol: BP2206
gene_biotype: protein_coding
description:
  Putative two-component response regulator (pseudogene); 20 bp deletion in pertussis, relative to parapertussis and bronchiseptica, following this codon.


ensembl_gene_id: BP2210
symbol: BP2210
gene_biotype: protein_coding
description:
  Putative DNA polymerase III alpha chain (pseudogene); HMMPfam hit to PF01336, OB-fold nucleic acid binding domain.


ensembl_gene_id: BP2211
symbol: BP2211
gene_biotype: protein_coding
description:
  Putative conserved DNA-binding protein; Similar to Escherichia coli, hypothetical protein YjeB or b4178 or z5785 or ecs5154 SW:YJEB_ECOLI (P21498) (141 aa) fasta scores: E(): 3.1e-18, 44.61% id in 130 aa.


ensembl_gene_id: BP2212
symbol: fhp
gene_biotype: protein_coding
description:
  Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.


ensembl_gene_id: BP2213
symbol: BP2213
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae hypothetical protein Vc0519 TR:Q9KUK0 (EMBL:AE004138) (147 aa) fasta scores: E(): 2.4e-18, 51.04% id in 143 aa, and to Neisseria meningitidis hypothetical protein NMB1951 TR:Q9JXP0 (EMBL:AE002543) (180 aa) fasta scores: E(): 9.2e-18, 47.02% id in 168 aa.


ensembl_gene_id: BP2215
symbol: ectA
gene_biotype: protein_coding
description:
  L-2,4-diaminobutyric acid acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A.


ensembl_gene_id: BP2216
symbol: BP2216
gene_biotype: protein_coding
description:
  Putative transcriptional regulator (MarR family); Similar to Vibrio cholerae transcriptional regulator, MarR family vc1278 TR:Q9KSH8 (EMBL:AE004207) (159 aa) fasta scores: E(): 3.1e-11, 36.02% id in 136 aa.


ensembl_gene_id: BP2217
symbol: BP2217
gene_biotype: protein_coding
description:
  Putative regulator (SIS family); Similar to Rhizobium meliloti putative transcriptional regulator protein smb20276 TR:CAC48666 (EMBL:AL603642) (296 aa) fasta scores: E(): 6.8e-19, 34.53% id in 304 aa.


ensembl_gene_id: BP2218
symbol: BP2218
gene_biotype: protein_coding
description:
  Putative aminotransferase; Similar to Rhizobium meliloti probable aminotransferase protein smb20277 TR:CAC48667 (EMBL:AL603642) (447 aa) fasta scores: E(): 2.6e-118, 69.14% id in 444 aa, and to Bacillus sphaericus adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA SW:BIOA_BACSH (P22805) (455 aa) fasta scores: E(): 5.2e-46, 34% id in 447 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: BP2219
symbol: BP2219
gene_biotype: protein_coding
description:
  Putative cell surface protein; Similar to Rhizobium meliloti hypothetical immunogenic protein smb20292 TR:CAC48682 (EMBL:AL603642) (327 aa) fasta scores: E(): 8e-93, 73.62% id in 326 aa, and to Brucella abortus 31 kDa immunogenic protein precursor BcsP31 SW:BCSP_BRUAB (P12920) (329 aa) fasta scores: E(): 3e-35, 36.69% id in 327 aa.


ensembl_gene_id: BP2220
symbol: BP2220
gene_biotype: protein_coding
description:
  Conserved inner membrane protein; Similar to Rhizobium meliloti hypothetical 88.3 kDa protein smb20291 TR:CAC48681 (EMBL:AL603642) (827 aa) fasta scores: E(): 1.1e-160, 54.67% id in 834 aa.


ensembl_gene_id: BP2224
symbol: bapA
gene_biotype: protein_coding
description:
  Putative autotransporter; Previously sequenced as Bordetella pertussis BapA protein BapA TR:Q9F4B4 (EMBL:AJ277632) (903 aa) fasta scores: E(): 0, 100% id in 903 aa.


ensembl_gene_id: BP2225
symbol: BP2225
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative cardiolipin synthetase transmembrane protein TR:CAC46099 (EMBL:AL591787) (487 aa) fasta scores: E(): 6.5e-100, 54% id in 487 aa, and to Bacillus firmus cardiolipin synthetase Cls SW:CLS_BACFI (O66043) (503 aa) fasta scores: E(): 2e-36, 28.21% id in 475 aa.


ensembl_gene_id: BP2226
symbol: BP2226
gene_biotype: protein_coding
description:
  Similar to Bacillus subtilis anti-sigma F factor antagonist spoIIAa SW:SP21_BACSU (P10727) (116 aa) fasta scores: E(): 1.1e-06, 30.84% id in 107 aa; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: BP2227
symbol: BP2227
gene_biotype: protein_coding
description:
  Putative anti-sigma factor; Similar to Chlamydia muridarum RsbW protein, putative tc0837 TR:Q9PJJ2 (EMBL:AE002350) (152 aa) fasta scores: E(): 6.3e-05, 28.57% id in 126 aa, and to Bacillus subtilis anti-sigma b factor RsbW SW:RSBW_BACSU (P17904) (160 aa) fasta scores: E(): 0.16, 23.88% id in 134 aa.


ensembl_gene_id: BP2229
symbol: BP2229
gene_biotype: protein_coding
description:
  Putative inner membrane transport protein; Similar to Pseudomonas aeruginosa probable MFS transporter pa4096 TR:Q9HWT2 (EMBL:AE004826) (419 aa) fasta scores: E(): 1.1e-10, 28.57% id in 406 aa, and to Streptomyces coelicolor putative integral membrane transport protein SCI30a.30c TR:Q9S243 (EMBL:AL096811) (463 aa) fasta scores: E(): 1.6e-09, 27.27% id in 396 aa.


ensembl_gene_id: BP2230
symbol: BP2230
gene_biotype: protein_coding
description:
  Putative regulator; Similar to Chlamydia trachomatis sigma regulatory family protein-pp2c phosphatase rbsu or ct588 TR:O84592 (EMBL:AE001329) (650 aa) fasta scores: E(): 5e-19, 27.88% id in 373 aa, and to Bacillus subtilis sigma factor sigb regulation protein RsbU rsbU SW:RSBU_BACSU (P40399) (335 aa) fasta scores: E(): 1.1e-13, 26.51% id in 264 aa.


ensembl_gene_id: BP2234
symbol: brpL
gene_biotype: protein_coding
description:
  Similar to Erwinia amylovora putative RNA polymerase sigma factor HrpL SWALL:Q46616 (EMBL:U36244) (182 aa) fasta scores: E(): 5.7e-14, 37.41% id in 155 aa, and to Escherichia coli RNA polymerase sigma-E factor RpoE or SigE or B2573 or Z3855 or Ecs3439 SWALL:RPOE_ECOLI (SWALL:P34086) (191 aa) fasta scores: E(): 7.9e-14, 36.09% id in 169 aa; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: BP2235
symbol: bscC
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa type II secretion protein PscC or Pa1716 SWALL:Q9I319 (EMBL:AE004598) (600 aa) fasta scores: E(): 1.6e-28, 36.15% id in 531 aa, and to Yersinia enterocolitica YscC SWALL:AAK69235 (EMBL:AF336309) (607 aa) fasta scores: E(): 4e-19, 36.21% id in 533 aa.


ensembl_gene_id: BP2237
symbol: bscU
gene_biotype: protein_coding
description:
  Putative type III secretion protein; Similar to many eg. Pseudomonas aeruginosa translocation protein in type III secretion PscU or Pa1690 TR:Q9I337 (EMBL:AE004596) (349 aa) fasta scores: E(): 1.3e-46, 41.88% id in 339 aa, and to Yersinia enterocolitica YscU TR:Q56844 (EMBL:AF102990) (354 aa) fasta scores: E(): 4.7e-45, 38.96% id in 349 aa.


ensembl_gene_id: BP2238
symbol: bscT
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa translocation protein in type III secretion PscT or pa1691 TR:Q9I336 (EMBL:AE004596) (262 aa) fasta scores: E(): 3.1e-29, 38.84% id in 242 aa, and to Yersinia pestis Yop proteins translocation protein TR:AAC62558 (EMBL:AF074612) (261 aa) fasta scores: E(): 4.8e-29, 35.45% id in 251 aa.


ensembl_gene_id: BP2239
symbol: bscS
gene_biotype: protein_coding
description:
  Putative type III secretion protein; Similar to Bordetella bronchiseptica BscS TR:Q9L9D8 (EMBL:AF172245) (88 aa) fasta scores: E(): 3.9e-30, 97.72% id in 88 aa, and to Yersinia pestis Yop translocation protein S SW:YSCS_YERPE (P40298) (79 aa) fasta scores: E(): 3e-13, 56.57% id in 76 aa.


ensembl_gene_id: BP2240
symbol: bscR
gene_biotype: protein_coding
description:
  Putative type III secretion protein; Similar to Bordetella bronchiseptica BscR TR:Q9L9D9 (EMBL:AF172245) (223 aa) fasta scores: E(): 1.1e-79, 99.1% id in 223 aa, and to Yersinia pestis Yop translocation protein R TR:AAC69787 (EMBL:AF020214) (217 aa) fasta scores: E(): 2.5e-40, 54.58% id in 218 aa. Also similar to BP1391, 40.625% identity (44.175% ungapped) in 224 aa overlap.


ensembl_gene_id: BP2241
symbol: bscQ
gene_biotype: protein_coding
description:
  Putative type III secretion protein; Similar to Bordetella bronchiseptica BscQ TR:Q9L9E0 (EMBL:AF172245) (123 aa) fasta scores: E(): 3.4e-34, 98.9% id in 91 aa, and to Yersinia pestis Yop translocation protein Q SW:YSCQ_YERPE (P42713) (307 aa) fasta scores: E(): 7e-07, 46.37% id in 69 aa.


ensembl_gene_id: BP2244
symbol: bscO
gene_biotype: protein_coding
description:
  Putative type III secretion protein; Similar to many eg. Bordetella bronchiseptica BscO TR:O68540 (EMBL:AF049488) (143 aa) fasta scores: E(): 3.3e-46, 97.88% id in 142 aa, and to Pseudomonas aeruginosa translocation protein in type III secretion PscO or pa1696 TR:Q9I331 (EMBL:AE004596) (158 aa) fasta scores: E(): 4.5e-05, 30.61% id in 147 aa.


ensembl_gene_id: BP2245
symbol: bscN
gene_biotype: protein_coding
description:
  Putative ATP synthase in type III secretion system; Similar to many eg. Bordetella bronchiseptica BscN TR:O68539 (EMBL:AF049488) (444 aa) fasta scores: E(): 2.6e-162, 99.32% id in 444 aa, and to Pseudomonas aeruginosa ATP synthase in type III secretion system pa1697 TR:Q9I330 (EMBL:AE004596) (440 aa) fasta scores: E(): 1.8e-103, 68.19% id in 415 aa.


ensembl_gene_id: BP2246
symbol: bscL
gene_biotype: protein_coding
description:
  Putative type III secretion protein; Similar to many eg. Bordetella bronchiseptica BscL TR:O68538 (EMBL:AF049488) (212 aa) fasta scores: E(): 8e-72, 98.58% id in 212 aa, and to Pseudomonas aeruginosa type III export protein PscL or pa1725 TR:Q9I312 (EMBL:AE004598) (214 aa) fasta scores: E(): 2.6e-23, 42.56% id in 195 aa.


ensembl_gene_id: BP2247
symbol: bscK
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Bordetella bronchiseptica BscK TR:O68537 (EMBL:AF049488) (220 aa) fasta scores: E(): 9.4e-87, 98.18% id in 220 aa.


ensembl_gene_id: BP2248
symbol: bscJ
gene_biotype: protein_coding
description:
  Putative type III secretion protein; Similar to many eg. Bordetella bronchiseptica BscJ TR:O68536 (EMBL:AF049488) (274 aa) fasta scores: E(): 4.5e-97, 98.17% id in 274 aa, and to Erwinia amylovora harpin secretion HrcJ precursor TR:Q46620 (EMBL:U56662) (260 aa) fasta scores: E(): 2.7e-29, 44.89% id in 245 aa.


ensembl_gene_id: BP2249
symbol: bscI
gene_biotype: protein_coding
description:
  Putative type III secretion protein; Similar to Bordetella bronchiseptica BscI TR:O68535 (EMBL:AF049488) (115 aa) fasta scores: E(): 8.1e-32, 90.43% id in 115 aa, and to Pseudomonas aeruginosa type III export protein PscI or pa1722 TR:Q9I315 (EMBL:AE004598) (112 aa) fasta scores: E(): 2.1, 28.07% id in 114 aa.


ensembl_gene_id: BP2251
symbol: bcrH2
gene_biotype: protein_coding
description:
  Putative regulatory protein; Weakly similar to many Pseudomonas aeruginosa regulatory protein PcrH or pa1707 TR:Q9I325 (EMBL:AE004597) (167 aa) fasta scores: E(): 0.0042, 25.34% id in 146 aa, and to Yersinia pestis low calcium response locus protein H Lcrh or ypcd1.30c or y0051 SW:LCRH_YERPE (P21207) (168 aa) fasta scores: E(): 0.063, 23.81% id in 126 aa.


ensembl_gene_id: BP2252
symbol: bopB
gene_biotype: protein_coding
description:
  Similar to Bordetella bronchiseptica outer protein B BopB TR:Q9REZ5 (EMBL:AF207789) (400 aa) fasta scores: E(): 2e-118, 96.75% id in 400 aa.


ensembl_gene_id: BP2253
symbol: bopD
gene_biotype: protein_coding
description:
  Similar to Bordetella bronchiseptica outer protein D BopD TR:Q9REZ6 (EMBL:AF207788) (313 aa) fasta scores: E(): 3.5e-86, 98.4% id in 313 aa.


ensembl_gene_id: BP2254
symbol: bcrH1
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa regulatory protein PcrH or pa1707 TR:Q9I325 (EMBL:AE004597) (167 aa) fasta scores: E(): 1.4e-12, 37.41% id in 155 aa, and to Yersinia pestis low calcium response locus protein H LcrH or ypcd1.30c or y0051 SW:LCRH_YERPE (P21207) (168 aa) fasta scores: E(): 4.7e-08, 31.66% id in 120 aa.


ensembl_gene_id: BP2256
symbol: bsp22
gene_biotype: protein_coding
description:
  Putative secreted protein; Strongly similar to Bordetella bronchiseptica secreted protein 22 Bsp22 TR:Q9REZ7 (EMBL:AF207787) (205 aa) fasta scores: E(): 4.1e-68, 96.58% id in 205 aa.


ensembl_gene_id: BP2257
symbol: bopN
gene_biotype: protein_coding
description:
  Putative outer protein N; Similar to many eg. Bordetella bronchiseptica outer protein N BopN TR:Q9REZ4 (EMBL:AF207790) (365 aa) fasta scores: E(): 4.3e-132, 99.17% id in 365 aa, and to Pseudomonas syringae hypersensitivity response secretion protein HrpJ SW:HRPJ_PSESY (Q05395) (346 aa) fasta scores: E(): 5e-08, 26.94% id in 308 aa.


ensembl_gene_id: BP2259
symbol: BP2259
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Pseudomonas aeruginosa pcr3 pcr3 or pa1701 TR:O30534 (EMBL:AF010150) (121 aa) fasta scores: E(): 0.52, 31.49% id in 127 aa.


ensembl_gene_id: BP2260
symbol: BP2260
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Bradyrhizobium japonicum Id192 TR:Q9ANI6 (EMBL:AF322012) (142 aa) fasta scores: E(): 0.99, 29.2% id in 113 aa, and to Chlamydia muridarum type III secretion chaperone, putative tc0546 TR:Q9PKC0 (EMBL:AE002323) (139 aa) fasta scores: E(): 5.1, 31.13% id in 106 aa.


ensembl_gene_id: BP2261
symbol: bcrD
gene_biotype: protein_coding
description:
  Putative type III secretion pore protein; Similar to many eg. Chlamydophila caviae Cds2 protein TR:O34019 (EMBL:U88070) (709 aa) fasta scores: E(): 6e-116, 47.14% id in 700 aa, and to Salmonella typhimurium Invasion protein InvA SW:INVA_SALTY (P35657) (665 aa) fasta scores: E(): 1.4e-90, 43.96% id in 671 aa. Also similar to BP1367, 36.510% identity (38.426% ungapped) in 682 aa overlap.


ensembl_gene_id: BP2262
symbol: bscD
gene_biotype: protein_coding
description:
  Putative type III secretion protein; Weak but full length similarity to Pseudomonas aeruginosa type III secretion protein PscD TR:P95432 (EMBL:U56077) (432 aa) fasta scores: E(): 0.00018, 25.57% id in 438 aa.


ensembl_gene_id: BP2264
symbol: bscF
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa putative type III secretion protein PscF or pa1719 TR:P95434 (EMBL:U56077) (85 aa) fasta scores: E(): 0.013, 27.9% id in 86 aa.


ensembl_gene_id: BP2267
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: BP2268
symbol: BP2268
gene_biotype: protein_coding
description:
  Similar to Escherichia coli methyl-accepting chemotaxis protein ii tar or chem or b1886 SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 2.1e-60, 46.69% id in 484 aa.


ensembl_gene_id: BP2269
symbol: BP2269
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative purine permease YcdG or b1006 SW:YCDG_ECOLI (P75892) (442 aa) fasta scores: E(): 4.5e-99, 66.58% id in 431 aa, and to Streptomyces coelicolor putative uracyl permease SCl6.07 TR:Q9L109 (EMBL:AL159139) (478 aa) fasta scores: E(): 6.5e-52, 45.9% id in 440 aa.


ensembl_gene_id: BP2271
symbol: BP2271
gene_biotype: protein_coding
description:
  Putative regulatory lipoprotein; Similar to Salmonella typhimurium phosphoglycerate transport regulatory protein PgtC precursor pgtC SW:PGTC_SALTY (P37591) (397 aa) fasta scores: E(): 2.7e-23, 28.57% id in 392 aa.


ensembl_gene_id: BP2274
symbol: BP2274
gene_biotype: protein_coding
description:
  Putative exported oxidoreductase (Pseudogene); Signal peptide predicted for BP2273 by SignalP 2.0 HMM (Signal peptide probabilty 0.947) with cleavage site probability 0.825 between residues 21 and 22.


ensembl_gene_id: BP2275
symbol: phnX
gene_biotype: protein_coding
description:
  Putative hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.


ensembl_gene_id: BP2276
symbol: BP2276
gene_biotype: protein_coding
description:
  Putative ABC transport permease; Similar to many eg. Rhizobium meliloti putative iron uptake ABC transporter permease protein smb21542 TR:CAC49383 (EMBL:AL603645) (680 aa) fasta scores: E(): 2.1e-99, 56.09% id in 492 aa.


ensembl_gene_id: BP2277
symbol: BP2277
gene_biotype: protein_coding
description:
  Putative ABC transport ATP-binding subunit; Similar to Pseudomonas putida ABC transporter TR:Q9KHS9 (EMBL:AF249736) (282 aa) fasta scores: E(): 2.6e-60, 67.98% id in 278 aa, and to Vibrio cholerae ABC transporter, ATP-binding protein vca0602 TR:Q9KLY9 (EMBL:AE004390) (403 aa) fasta scores: E(): 1.1e-46, 47.32% id in 355 aa.


ensembl_gene_id: BP2278
symbol: BP2278
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Pseudomonas putida response regulator TR:Q9KHT0 (EMBL:AF249736) (289 aa) fasta scores: E(): 6.2e-53, 51.91% id in 287 aa, and to Rhodospirillum rubrum rubisco operon transcriptional regulator cbbR SW:CBBR_RHORU (P52595) (298 aa) fasta scores: E(): 3e-20, 28.92% id in 287 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2279
symbol: BP2279
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa2804 TR:Q9I039 (EMBL:AE004707) (193 aa) fasta scores: E(): 8.3e-24, 45.66% id in 173 aa, and to Rhizobium loti Mll1439 protein TR:Q98KK1 (EMBL:AP002997) (194 aa) fasta scores: E(): 6.6e-20, 40.46% id in 173 aa.


ensembl_gene_id: BP2280
symbol: BP2280
gene_biotype: protein_coding
description:
  Putative sulfurtransferase; Similar to Pseudomonas aeruginosa probable 3-mercaptopyruvate sulfurtransferase SseA or pa1292 TR:Q9I452 (EMBL:AE004558) (284 aa) fasta scores: E(): 5.6e-46, 49.82% id in 281 aa, and to Rattus norvegicus 3-mercaptopyruvate sulfurtransferase MpsT SW:THTM_RAT (P97532) (296 aa) fasta scores: E(): 1.2e-22, 36.73% id in 245 aa.


ensembl_gene_id: BP2282
symbol: htpX
gene_biotype: protein_coding
description:
  Probable integral membrane protein (pseudogene); G in pertussis; G(C) in parapertussis and bronchiseptica; Belongs to the peptidase M48B family.


ensembl_gene_id: BP2283
symbol: qor
gene_biotype: protein_coding
description:
  Similar to Escherichia coli quinone oxidoreductase Qor or Hcz or b4051 SW:QOR_ECOLI (P28304) (327 aa) fasta scores: E(): 3.7e-67, 58.64% id in 324 aa, and to Pseudomonas aeruginosa quinone oxidoreductase Qor or pa0023 SW:QOR_PSEAE (P43903) (325 aa) fasta scores: E(): 8e-80, 66.25% id in 323 aa.


ensembl_gene_id: BP2284
symbol: BP2284
gene_biotype: protein_coding
description:
  Conserved hypothetical integral membrane protein; Similar to Bacillus subtilis hypothetical 34.0 kDa protein in gltP-pcp intergenic region YcbK SW:YCBK_BACSU (P42243) (312 aa) fasta scores: E(): 7.1e-20, 28.84% id in 312 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3358 TR:Q9HYN8 (EMBL:AE004758) (292 aa) fasta scores: E(): 9.6e-10, 29.13% id in 302 aa.


ensembl_gene_id: BP2285
symbol: BP2285
gene_biotype: protein_coding
description:
  Conserved hypothetical integral membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3222 TR:Q9HZ18 (EMBL:AE004745) (299 aa) fasta scores: E(): 2e-56, 60.07% id in 278 aa, and to Pasteurella multocida hypothetical protein Pm0461 TR:Q9CNH0 (EMBL:AE006082) (286 aa) fasta scores: E(): 4e-44, 45.68% id in 278 aa.


ensembl_gene_id: BP2286
symbol: BP2286
gene_biotype: protein_coding
description:
  Putative transcriptional regulator (MarR family); Similar to Burkholderia pseudomallei hypothetical 18.0 kDa protein TR:Q9ZF73 (EMBL:AF110185) (163 aa) fasta scores: E(): 3.6e-17, 46.26% id in 134 aa, and to Salmonella typhimurium multiple antibiotic resistance protein MarR or stm1520 SW:MARR_SALTY (Q56069) (144 aa) fasta scores: E(): 2.9e-10, 33.33% id in 129 aa.


ensembl_gene_id: BP2289
symbol: BP2289
gene_biotype: protein_coding
description:
  Putative outer membrane protein (pseudogene); (CTGGG)2 in pertussis; (CTGGG)1 in parapertussis and bronchiseptica.


ensembl_gene_id: BP2290
symbol: BP2290
gene_biotype: protein_coding
description:
  Similar to Escherichia coli, and multidrug resistance protein A EmrB or b2686 or z3987 or ecs3548 SW:EMRB_ECOLI (P27304) (512 aa) fasta scores: E(): 9.4e-102, 54.72% id in 508 aa, and to Haemophilus influenzae multidrug resistance protein B homolog EmrB or hi0897 SW:EMRB_HAEIN (P44927) (510 aa) fasta scores: E(): 2.7e-98, 52.89% id in 501 aa; Belongs to the major facilitator superfamily.


ensembl_gene_id: BP2291
symbol: BP2291
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida tartrate dehydrogenase SW:TTUC_PSEPU (Q51945) (364 aa) fasta scores: E(): 2.7e-99, 67.77% id in 360 aa, and to Escherichia coli probable tartrate dehydrogenase YeaU or b1800 SW:TTUC_ECOLI (P76251) (361 aa) fasta scores: E(): 7.8e-104, 69.49% id in 354 aa.


ensembl_gene_id: BP2292
symbol: BP2292
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to many eg. Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SW:MOCR_RHIME (P49309) (493 aa) fasta scores: E(): 1.4e-63, 41.43% id in 473 aa.


ensembl_gene_id: BP2293
symbol: BP2293
gene_biotype: protein_coding
description:
  Putative solute-binding transport protein (periplasmic); Similar to Agrobacterium tumefaciens Agr_l_2786p TR:AAK89959 (EMBL:AE008339) (585 aa) fasta scores: E(): 8.4e-66, 37.86% id in 515 aa, and to Rhizobium loti ABC transporter oligopeptide-binding protein Mlr3395 TR:Q98GC1 (EMBL:AP003001) (536 aa) fasta scores: E(): 5.6e-55, 35.48% id in 527 aa. Also similar to BP0284, 59.693% identity (60.155% ungapped) in 521 aa overlap.


ensembl_gene_id: BP2294
symbol: BP2294
gene_biotype: protein_coding
description:
  Putative integral membrane transport protein; Similar to many eg. Rhizobium loti ABC transporter permease protein Mlr3397 TR:Q98GC0 (EMBL:AP003001) (328 aa) fasta scores: E(): 4.1e-47, 47.07% id in 325 aa.


ensembl_gene_id: BP2295
symbol: BP2295
gene_biotype: protein_coding
description:
  Putative integral membrane transport protein; Similar to Rhizobium meliloti probable ABC transporter, permease protein Sma2083 TR:AAK65795 (EMBL:AE007299) (332 aa) fasta scores: E(): 1.4e-52, 52.2% id in 272 aa.


ensembl_gene_id: BP2296
symbol: BP2296
gene_biotype: protein_coding
description:
  Putative ABC transport ATP-binding subunit; Similar to many eg. Agrobacterium tumefaciens Agr_l_3504p TR:AAK90329 (EMBL:AE008378) (575 aa) fasta scores: E(): 2.8e-114, 60.74% id in 535 aa, and to Rhizobium meliloti putative oligopeptide ABC transporter ATP-binding protein Smb20111 TR:CAC48511 (EMBL:AL603642) (546 aa) fasta scores: E(): 1e-84, 48.53% id in 546 aa.


ensembl_gene_id: BP2298
symbol: BP2298
gene_biotype: protein_coding
description:
  Similar to many eg. Escherichia coli 4-aminobutyrate aminotransferase GabT or b2662 SW:GABT_ECOLI (P22256) (426 aa) fasta scores: E(): 1.3e-88, 56.97% id in 416 aa, and to Rhizobium meliloti putative 4-aminobutyrate aminotransferase protein TR:CAC49252 (EMBL:AL603645) (422 aa) fasta scores: E(): 2e-102, 66.18% id in 414 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: BP2299
symbol: BP2299
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa0131 TR:Q9I701 (EMBL:AE004451) (95 aa) fasta scores: E(): 1.3e-20, 66.3% id in 92 aa, and to Rhizobium loti Mll5080 protein TR:Q98CN0 (EMBL:AP003005) (93 aa) fasta scores: E(): 2.1e-16, 55.05% id in 89 aa.


ensembl_gene_id: BP2300
symbol: BP2300
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti acetylpolyamine aminohydrolase Mll0103 TR:Q98NK3 (EMBL:AP002994) (342 aa) fasta scores: E(): 5.8e-47, 46.88% id in 337 aa, and to Mycoplana ramosa acetylpolyamine aminohydrolase AphA or Aph SW:APHA_MYCRA (Q48935) (341 aa) fasta scores: E(): 1.1e-35, 37.65% id in 332 aa.


ensembl_gene_id: BP2301
symbol: BP2301
gene_biotype: protein_coding
description:
  Putative amidohydrolase; Similar to Pseudomonas aeruginosa N-carbamoyl-beta-alanine amidohydrolase Pa0444 TR:Q9I673 (EMBL:AE004481) (427 aa) fasta scores: E(): 4.3e-88, 57.31% id in 410 aa, and to Bacillus stearothermophilus N-carbamoyl-L-amino acid amidohydrolase AmaB SW:AMB2_BACST (Q53389) (409 aa) fasta scores: E(): 3e-45, 38.2% id in 411 aa. Also similar to BP1859,70.120% identity (70.803% ungapped) in 415 aa overlap.


ensembl_gene_id: BP2302
symbol: BP2302
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to many eg. Pseudomonas aeruginosa hypothetical protein Pa0239 TR:Q9I6P9 (EMBL:AE004462) (292 aa) fasta scores: E(): 1.1e-23, 36.17% id in 293 aa.


ensembl_gene_id: BP2303
symbol: BP2303
gene_biotype: protein_coding
description:
  Putative aldehyde dehydrogenase; Similar to many eg. Pseudomonas aeruginosa probable aldehyde dehydrogenase Pa0219 TR:Q9I6R9 (EMBL:AE004460) (496 aa) fasta scores: E(): 1e-116, 60.97% id in 492 aa, and to Homo sapiens aldehyde dehydrogenase 1a2 AldH1a2 or raldh2 SW:DHA2_HUMAN (O94788) (499 aa) fasta scores: E(): 1.4e-78, 43.51% id in 478 aa.


ensembl_gene_id: BP2304
symbol: BP2304
gene_biotype: protein_coding
description:
  Similar to many eg. Escherichia coli putative 2-hydroxyacid dehydrogenase YcdW or b1033 SW:YCDW_ECOLI (P75913) (325 aa) fasta scores: E(): 2.5e-48, 45.72% id in 304 aa.


ensembl_gene_id: BP2305
symbol: BP2305
gene_biotype: protein_coding
description:
  Putative aminotransferase; Similar to many eg. Pseudomonas fluorescens family II aminotransferase TR:Q9FDI7 (EMBL:AF247644) (458 aa) fasta scores: E(): 1.5e-99, 58.64% id in 428 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: BP2306
symbol: BP2306
gene_biotype: protein_coding
description:
  Putative sodium:alanine symporter; Similar to many eg. Pseudomonas aeruginosa probable sodium:alanine symporter Pa2533 TR:Q9I0V1 (EMBL:AE004681) (449 aa) fasta scores: E(): 2.1e-125, 75.78% id in 446 aa.


ensembl_gene_id: BP2307
symbol: BP2307
gene_biotype: protein_coding
description:
  Conserved ATP-binding protein; Similar to Escherichia coli hypothetical protein yjgr yjgr or b4263 SW:YJGR_ECOLI (P39342) (500 aa) fasta scores: E(): 9.7e-112, 63.24% id in 506 aa.


ensembl_gene_id: BP2308
symbol: BP2308
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many eg. Neisseria meningitidis hypothetical protein Nmb1648 TR:Q9JYC7 (EMBL:AE002515) (242 aa) fasta scores: E(): 6.6e-60, 67.22% id in 241 aa.


ensembl_gene_id: BP2309
symbol: purD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphoribosylamine--glycine ligase PurD or b4005 SW:PUR2_ECOLI (P15640) (429 aa) fasta scores: E(): 7e-93, 60.41% id in 432 aa; Belongs to the GARS family.


ensembl_gene_id: BP2310
symbol: hemF
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: BP2311
symbol: nadD
gene_biotype: protein_coding
description:
  Putative nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: BP2312
symbol: rsfS
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: BP2313
symbol: rlmH
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: BP2314
symbol: Maf
gene_biotype: protein_coding
description:
  Maf-like protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: BP2315
symbol: vag8
gene_biotype: protein_coding
description:
  Autotransporter; Previously sequenced as Bordetella pertussis Vag8 protein Vag8-2 SWALL:Q8VV95 (EMBL:AJ420993) (915 aa) fasta scores: E(): 0, 100% id in 915 aa.


ensembl_gene_id: BP2317
symbol: BP2317
gene_biotype: protein_coding
description:
  Putative ribonuclease; Similar to a family of proteins involved in processing of the 5'end of 16S rRNA and implicated in the formation of cytoplasmic axial filaments during chromosome segregation and cell division, eg. Neisseria meningitidis cytoplasmic axial filament protein nmb1791 TR:Q9JY14 (EMBL:AE002529) (509 aa) fasta scores: E(): 5.2e-111, 60.41% id in 485 aa, and to Escherichia coli, and ribonuclease G CafA or Rng or b3247 or z4605 or ecs4119 SW:RNG_ECOLI (P25537) (488 aa) fasta scores: E(): 6.6e-98, 52.24% id in 490 aa.


ensembl_gene_id: BP2318
symbol: BP2318
gene_biotype: protein_coding
description:
  Putative dehydratase; Similar to Amycolatopsis methanolica prephenate dehydratase PheA or Pdt SW:PHEA_AMYME (Q44104) (304 aa) fasta scores: E(): 3.1e-19, 35.76% id in 274 aa, and to Neisseria gonorrhoeae P-protein PheA SW:PHEA_NEIGO (Q9ZHY3) (362 aa) fasta scores: E(): 3.8e-17, 30.07% id in 266 aa.


ensembl_gene_id: BP2319
symbol: BP2319
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator pa1283 TR:Q9I461 (EMBL:AE004558) (186 aa) fasta scores: E(): 2.1e-41, 60.94% id in 169 aa.


ensembl_gene_id: BP2320
symbol: BP2320
gene_biotype: protein_coding
description:
  Putative inner membrane efflux protein; Similar to many major facilitator family proteins eg. Pseudomonas aeruginosa probable MFS transporter pa1282 TR:Q9I462 (EMBL:AE004557) (501 aa) fasta scores: E(): 1.2e-90, 58.07% id in 489 aa, and to Salmonella typhimurium methyl viologen resistance protein SmvA SW:SMVA_SALTY (P37594) (496 aa) fasta scores: E(): 2.2e-53, 38.91% id in 496 aa.


ensembl_gene_id: BP2321
symbol: msbA
gene_biotype: protein_coding
description:
  Putative ABC transporter; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: BP2322
symbol: waaF
gene_biotype: protein_coding
description:
  Heptosyltransferase II; Previously sequenced as Bordetella pertussis heptosyltransferase II WaaF TR:O07076 (EMBL:Y13475) (321 aa) fasta scores: E(): 2.3e-125, 100% id in 321 aa, and to Escherichia coli ADP-heptose--LPS heptosyltransferase II RfaF or WaaF or b3620 SW:RFAF_ECOLI (P37692) (348 aa) fasta scores: E(): 3.2e-08, 29.58% id in 311 aa.


ensembl_gene_id: BP2323
symbol: BP2323
gene_biotype: protein_coding
description:
  Previously sequenced as Bordetella pertussis hypothetical 19.1 kDa protein TR:O07077 (EMBL:Y13475) (179 aa) fasta scores: E(): 2.6e-63, 100% id in 179 aa, and similar to many eg. Myxococcus xanthus hypothetical 28.3 kDa protein TR:AAK83000 (EMBL:AF285783) (258 aa) fasta scores: E(): 2e-14, 32.95% id in 264 aa.


ensembl_gene_id: BP2324
symbol: BP2324
gene_biotype: protein_coding
description:
  Similar to others Escherichia coli hypothetical protein yeiw yeiw or b2170.1 SW:YEIW_ECOLI (P58039) (84 aa) fasta scores: E(): 2.8e-21, 65.47% id in 84 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1578.1 pa1578.1 SW:YF7A_PSEAE (P58040) (84 aa) fasta scores: E(): 4.2e-17, 56.09% id in 82 aa.


ensembl_gene_id: BP2325
symbol: BP2325
gene_biotype: protein_coding
description:
  Putative transferase; May be involved in LPS biosynthesis. Similar to many eg. Pseudomonas aeruginosa glucosyltransferase I WaaG TR:Q9S648 (EMBL:AF090724) (373 aa) fasta scores: E(): 3e-13, 29.21% id in 356 aa, and to Serratia marcescens putative glycosyltransferase TR:Q9X977 (EMBL:U52844) (375 aa) fasta scores: E(): 3.6e-10, 28.98% id in 376 aa.


ensembl_gene_id: BP2326
symbol: BP2326
gene_biotype: protein_coding
description:
  Putative polysaccharide deacetylase; Similar to Xylella fastidiosa hypothetical protein Xf0878 TR:Q9PF00 (EMBL:AE003927) (257 aa) fasta scores: E(): 2.5e-36, 47.89% id in 238 aa, and to Streptomyces coelicolor putative polysaccharide deacetylase SCC61a.31 TR:Q9KYG2 (EMBL:AL356595) (229 aa) fasta scores: E(): 1.9e-20, 38.29% id in 235 aa.


ensembl_gene_id: BP2327
symbol: BP2327
gene_biotype: protein_coding
description:
  Similar to many eg. Escherichia coli outer-membrane protein YhbX precursor or b3173 SW:YHBX_ECOLI (P42640) (541 aa) fasta scores: E(): 4.4e-53, 36.45% id in 480 aa.


ensembl_gene_id: BP2328
symbol: BP2328
gene_biotype: protein_coding
description:
  Putative transferase; May be involved in LPS biosynthesis. Similar to Deinococcus radiodurans conserved hypothetical protein dr1555 TR:Q9RU40 (EMBL:AE001999) (411 aa) fasta scores: E(): 1.8e-12, 27.9% id in 301 aa, and to Rhizobium meliloti lipopolysaccharide core biosynthesis mannosyltransferase lpsb lpsb or r01572 or smc01219 SW:LPSB_RHIME (Q9R9N2) (351 aa) fasta scores: E(): 7.6e-08, 25.58% id in 383 aa.


ensembl_gene_id: BP2329
symbol: BP2329
gene_biotype: protein_coding
description:
  Putative transferase; May be involved in LPS biosynthesis. Similar to many eg. Haemophilus ducreyi beta 1-4 glucosyltransferase LgtF TR:Q9L875 (EMBL:AF215936) (252 aa) fasta scores: E(): 5.2e-38, 44.49% id in 245 aa.


ensembl_gene_id: BP2330
symbol: BP2330
gene_biotype: protein_coding
description:
  Similar to many eg. Xylella fastidiosa hypothetical protein Xf1469 xf1469 TR:Q9PDB0 (EMBL:AE003977) (284 aa) fasta scores: E(): 1.4e-61, 56.02% id in 282 aa.


ensembl_gene_id: BP2331
symbol: BP2331
gene_biotype: protein_coding
description:
  Putative transferase; May be involved in LPS biosynthesis. Similar to Xylella fastidiosa hypothetical protein Xf1470 TR:Q9PDA9 (EMBL:AE003977) (376 aa) fasta scores: E(): 7e-29, 44.41% id in 376 aa, and to Rhizobium meliloti lipopolysaccharide core biosynthesis mannosyltransferase LpsB or r01572 or smc01219 SW:LPSB_RHIME (Q9R9N2) (351 aa) fasta scores: E(): 3.2e-13, 29.64% id in 280 aa.


ensembl_gene_id: BP2332
symbol: dnaE
gene_biotype: protein_coding
description:
  Similar to many eg. Escherichia coli DNA polymerase III alpha subunit DnaE or PolC or b0184 SW:DP3A_ECOLI (P10443) (1160 aa) fasta scores: E(): 0, 48.89% id in 1176 aa. Its C-terminal region is also similar to BP2208, 35.149% identity (37.238% ungapped) in 606 aa overlap.


ensembl_gene_id: BP2333
symbol: BP2333
gene_biotype: protein_coding
description:
  Putative dioxygenase; Similar to Xylella fastidiosa aspartyl/asparaginyl beta-hydroxylase xf2100 TR:Q9PBP0 (EMBL:AE004025) (301 aa) fasta scores: E(): 2.1e-76, 57.33% id in 300 aa, and to Salmonella typhimurium, and putative dioxygenase LpxO or PagQ TR:Q9KGX6 (EMBL:AF279438) (302 aa) fasta scores: E(): 2.4e-69, 55.67% id in 291 aa.


ensembl_gene_id: BP2334
symbol: BP2334
gene_biotype: protein_coding
description:
  Putative ATP-dependent helicase; Similar to Pseudomonas aeruginosa probable ATP-dependent helicase pa3297 TR:Q9HYU6 (EMBL:AE004752) (1326 aa) fasta scores: E(): 1.4e-181, 47.69% id in 1325 aa, and to Escherichia coli ATP-dependent helicase HrpA or b1413 SW:HRPA_ECOLI (P43329) (1300 aa) fasta scores: E(): 2.5e-85, 46.11% id in 1275 aa.


ensembl_gene_id: BP2335
symbol: argA
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa amino-acid acetyltransferase ArgA or pa5204 SW:ARGA_PSEAE (P22567) (432 aa) fasta scores: E(): 2.8e-71, 45.7% id in 431 aa, and to Escherichia coli amino-acid acetyltransferase ArgA or b2818 or z4135 or ecs3675 SW:ARGA_ECOLI (P08205) (443 aa) fasta scores: E(): 9.1e-71, 42.06% id in 435 aa; Belongs to the acetyltransferase family. ArgA subfamily.


ensembl_gene_id: BP2336
symbol: BP2336
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.


ensembl_gene_id: BP2337
symbol: BP2337
gene_biotype: protein_coding
description:
  Putative phospholipase; Similar to Pseudomonas aeruginosa non-hemolytic phospholipase C precursor PlcN or pa3319 SW:PHLN_PSEAE (P15713) (692 aa) fasta scores: E(): 1.9e-64, 45.1% id in 674 aa.


ensembl_gene_id: BP2338
symbol: BP2338
gene_biotype: protein_coding
description:
  Putative transport protein; Similar to proteins thought to be involved in phosphate transport eg. Pseudomonas putida phosphate transport system protein PhoU SW:PHOU_PSEPU (Q9Z410) (256 aa) fasta scores: E(): 6.3e-38, 46.98% id in 249 aa, and to Escherichia coli phosphate transport system protein PhoU or nmpa or b3724 SW:PHOU_ECOLI (P07656) (241 aa) fasta scores: E(): 2.3e-29, 40.92% id in 237 aa.


ensembl_gene_id: BP2339
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase a; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: BP2340
symbol: BP2340
gene_biotype: protein_coding
description:
  Putative acyl-CoA dehydrogenase; Similar to Escherichia coli AidB protein or b4187 SW:AIDB_ECOLI (P33224) (541 aa) fasta scores: E(): 2.3e-87, 48% id in 550 aa.


ensembl_gene_id: BP2341
symbol: BP2341
gene_biotype: protein_coding
description:
  Conserved hypothetical lipoprotein; Similar to Xylella fastidiosa hypothetical protein Xf0413 TR:Q9PG89 (EMBL:AE003892) (456 aa) fasta scores: E(): 1.9e-67, 50.8% id in 437 aa, and to Streptococcus pyogenes hypothetical protein Spy0266 TR:Q9A1H6 (EMBL:AE006493) (423 aa) fasta scores: E(): 1.6e-44, 41.83% id in 392 aa.


ensembl_gene_id: BP2342
symbol: BP2342
gene_biotype: protein_coding
description:
  Hypothetical protein; Weakly similar to Escherichia coli O157:H7 EDL933 hypothetical protein YrbL TR:AAG58341 (EMBL:AE005548) (210 aa) fasta scores: E(): 0.023, 26.57% id in 207 aa. Also similar to BP3672, 45.673% identity (47.500% ungapped) in 208 aa overlap.


ensembl_gene_id: BP2343
symbol: BP2343
gene_biotype: protein_coding
description:
  Putative methypurine-DNA glycosylase; Similar to Pseudomonas aeruginosa hypothetical protein Pa4010 TR:Q9HX17 (EMBL:AE004818) (239 aa) fasta scores: E(): 2.1e-65, 70.48% id in 227 aa. Also some similarity to many DNA-3-methyladenine glycosylases eg. Mus musculus DNA-3-methyladenine glycosylase Mpg or Mid1 SW:3MG_MOUSE (Q04841) (333 aa) fasta scores: E(): 1.2e-08, 33% id in 203 aa.


ensembl_gene_id: BP2344
symbol: BP2344
gene_biotype: protein_coding
description:
  Similar to many eg. Xylella fastidiosa hypothetical protein Xf0115 TR:Q9PH31 (EMBL:AE003865) (124 aa) fasta scores: E(): 1.9e-19, 49.12% id in 114 aa, and to Rhizobium meliloti hypothetical protein Smc00386 TR:CAC41743 (EMBL:AL591783) (116 aa) fasta scores: E(): 8.8e-13, 37.71% id in 114 aa; Belongs to the ArsC family.


ensembl_gene_id: BP2345
symbol: BP2345
gene_biotype: protein_coding
description:
  Putative inner membrane permease polyamine transport protein; Similar to Escherichia coli putrescine transport system permease protein PotI or b0857 SW:POTI_ECOLI (P31136) (281 aa) fasta scores: E(): 3.6e-58, 59.14% id in 257 aa, and to Neisseria meningitidis putative polyamine permease inner membrane protein NMA0818 TR:Q9JVJ1 (EMBL:AL162754) (295 aa) fasta scores: E(): 2.7e-55, 54.78% id in 261 aa.


ensembl_gene_id: BP2346
symbol: BP2346
gene_biotype: protein_coding
description:
  Putative inner membrane permease polyamine transport protein; Similar to Pseudomonas aeruginosa polyamine transport protein PotH or pa0303 TR:Q9I6I8 (EMBL:AE004468) (293 aa) fasta scores: E(): 1.8e-66, 58.88% id in 287 aa, and to Escherichia coli putrescine transport system permease protein or b0856 SW:POTH_ECOLI (P31135) (317 aa) fasta scores: E(): 2.9e-65, 56.53% id in 283 aa.


ensembl_gene_id: BP2347
symbol: potA
gene_biotype: protein_coding
description:
  Putative polyamine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: BP2348
symbol: BP2348
gene_biotype: protein_coding
description:
  Putative polyamine transport protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.


ensembl_gene_id: BP2349
symbol: kdkA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.


ensembl_gene_id: BP2350
symbol: BP2350
gene_biotype: protein_coding
description:
  Globin-like protein; Similar to Burkholderia pseudomallei putative globin TR:AAK38159 (EMBL:AY030274) (170 aa) fasta scores: E(): 7.6e-35, 60% id in 140 aa, and to Mycobacterium tuberculosis, and hemoglobin-like protein Hbo GlbO or Rv2470 or Mt2546 or Mtv008.26 TR:AAK46846 (EMBL:AL021246) (134 aa) fasta scores: E(): 3.3e-09, 41.34% id in 104 aa.


ensembl_gene_id: BP2351
symbol: BP2351
gene_biotype: protein_coding
description:
  Putative inner membrane transport permease; Similar to Pseudomonas aeruginosa hypothetical protein Pa2858 TR:Q9HZY6 (EMBL:AE004712) (830 aa) fasta scores: E(): 7.8e-109, 42.34% id in 836 aa.


ensembl_gene_id: BP2352
symbol: BP2352
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide Smb21438 TR:CAC49667 (EMBL:AL603646) (332 aa) fasta scores: E(): 9.2e-37, 36.19% id in 315 aa, and to Escherichia coli putative ABC transporter periplasmic binding protein YiaO precursor or b3579 SW:YIAO_ECOLI (P37676) (328 aa) fasta scores: E(): 5.1e-33, 35.43% id in 302 aa.


ensembl_gene_id: BP2353
symbol: BP2353
gene_biotype: protein_coding
description:
  Putative inner membrane transport protein; Similar to Bacillus halodurans c4-dicarboxylate transport system Bh0702 TR:Q9KEZ7 (EMBL:AP001509) (177 aa) fasta scores: E(): 1.8e-08, 29.16% id in 144 aa, and to Rhizobium meliloti putative permease protein Bmb20296 TR:CAC48686 (EMBL:AL603642) (172 aa) fasta scores: E(): 4.4e-07, 27.77% id in 144 aa.


ensembl_gene_id: BP2354
symbol: BP2354
gene_biotype: protein_coding
description:
  Putative inner membrane protein; Similar to Bacillus halodurans C4-dicarboxylate transport system Bh2671 TR:Q9K9H6 (EMBL:AP001516) (426 aa) fasta scores: E(): 2.1e-63, 43.26% id in 416 aa, and to Pseudomonas aeruginosa probable C4-dicarboxylate transporter Pa5169 TR:Q9HU16 (EMBL:AE004929) (427 aa) fasta scores: E(): 2.8e-59, 42.92% id in 417 aa.


ensembl_gene_id: BP2358
symbol: gltA
gene_biotype: protein_coding
description:
  Putative membrane protein (pseudogene); Signal peptide predicted for BP2356 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.447 between residues 33 and 34; Belongs to the citrate synthase family.


ensembl_gene_id: BP2359
symbol: BP2359
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many eg. Pseudomonas aeruginosa hypothetical protein Pa0760 TR:Q9I5G9 (EMBL:AE004511) (84 aa) fasta scores: E(): 5.6e-05, 36.47% id in 85 aa, and to Vibrio cholerae hypothetical protein Vc2471 TR:Q9KPA2 (EMBL:AE004316) (86 aa) fasta scores: E(): 0.00038, 31.64% id in 79 aa.


ensembl_gene_id: BP2360
symbol: sdhB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli succinate dehydrogenase iron-sulfur protein SdhB or b0724 SW:DHSB_ECOLI (P07014) (238 aa) fasta scores: E(): 3.3e-62, 64.25% id in 235 aa, and to Rhodoferax fermentans fumarate reductase iron-sulpher protein subunit TR:O83002 (EMBL:AB015757) (234 aa) fasta scores: E(): 1.7e-75, 80% id in 230 aa.


ensembl_gene_id: BP2361
symbol: sdhA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli, and succinate dehydrogenase flavoprotein subunit SdhA or b0723 or z0877 or ecs0748 SW:DHSA_ECOLI (P10444) (588 aa) fasta scores: E(): 2.8e-132, 57.92% id in 587 aa, and to Rhodoferax fermentans fumarate reductase flavoprotein subunit TR:O83001 (EMBL:AB015757) (601 aa) fasta scores: E(): 2.1e-153, 69.73% id in 598 aa; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: BP2362
symbol: sdhD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli succinate dehydrogenase hydrophobic membrane anchor protein SdhD or b0722 SW:DHSD_ECOLI (P10445) (115 aa) fasta scores: E(): 1.2e-08, 35.45% id in 110 aa, and to Rhodoferax fermentans fumarate reductase cytochrome b small subunit TR:O83000 (EMBL:AB015757) (121 aa) fasta scores: E(): 4.3e-17, 43.9% id in 123 aa.


ensembl_gene_id: BP2363
symbol: sdhC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli, and succinate dehydrogenase cytochrome B-556 subunit SdhC or CybA or b0721 or z0875 or ecs0746 SW:DHSC_ECOLI (P10446) (129 aa) fasta scores: E(): 1.7e-06, 27.27% id in 132 aa, and to Rhodoferax fermentans fumarate reductase cytochrome B large subunit TR:O82999 (EMBL:AB015757) (147 aa) fasta scores: E(): 4e-17, 44.89% id in 147 aa.


ensembl_gene_id: BP2364
symbol: BP2364
gene_biotype: protein_coding
description:
  Similar to Deinococcus radiodurans transcriptional regulator, GntR family Dra0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 2.9e-18, 35.71% id in 238 aa, and to Streptomyces coelicolor putative GntR-family transcriptional regulator sc7e4.28C TR:Q9K492 (EMBL:AL359214) (254 aa) fasta scores: E(): 2.5e-14, 31.44% id in 229 aa.


ensembl_gene_id: BP2365
symbol: mdH
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.


ensembl_gene_id: BP2368
symbol: prpC
gene_biotype: protein_coding
description:
  Probable methylisocitrate lyase (pseudogene); (C)4 inpertussis; (C)2 in parapertussis and bronchiseptica; Belongs to the citrate synthase family.


ensembl_gene_id: BP2369
symbol: acnA-2
gene_biotype: protein_coding
description:
  Aconitate hydratase; Similar to Alcaligenes eutrophus probable methyl-cis-aconitic acid hydratase AcnM TR:AAL03990 (EMBL:AF325554) (869 aa) fasta scores: E(): 0, 83.96% id in 867 aa, and to Escherichia coli aconitate hydratase 1 AcnA or Acn or b1276 SW:ACO1_ECOLI (P25516) (890 aa) fasta scores: E(): 2.2e-83, 45.16% id in 879 aa.


ensembl_gene_id: BP2370
symbol: BP2370
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Alcaligenes eutrophus hypothetical 41.5 kDa protein TR:AAL03991 (EMBL:AF325554) (396 aa) fasta scores: E(): 3.3e-118, 78.28% id in 396 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0793 TR:Q9I5E5 (EMBL:AE004514) (395 aa) fasta scores: E(): 1.8e-110, 71.97% id in 396 aa. Also similar to BP0922, 35.459% identity (36.968% ungapped) in 392 aa overlap.


ensembl_gene_id: BP2371
symbol: prpD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 2-methylcitrate dehydratase PrpD or b0334 SW:PRPD_ECOLI (P77243) (483 aa) fasta scores: E(): 4e-166, 79.66% id in 477 aa, and to Alcaligenes eutrophus PrpD TR:AAL03992 (EMBL:AF325554) (484 aa) fasta scores: E(): 1.2e-166, 80.82% id in 485 aa.


ensembl_gene_id: BP2372
symbol: BP2372
gene_biotype: protein_coding
description:
  Putative conserved inner membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0661 TR:Q9I5R0 (EMBL:AE004501) (140 aa) fasta scores: E(): 1.2e-26, 49.28% id in 140 aa, and to Neisseria meningitidis conserved hypothetical inner membrane protein NMA2177 TR:Q9JSR1 (EMBL:AL162758) (145 aa) fasta scores: E(): 6.3e-22, 45.2% id in 146 aa.


ensembl_gene_id: BP2373
symbol: BP2373
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Neisseria meningitidis Tou5 TR:Q9RMM0 (EMBL:AF194079) (380 aa) fasta scores: E(): 1.2e-58, 43.53% id in 379 aa. Also similar to the N-terminal portion of others eg. Escherichia coli hypothetical protein YcbY or b0948 SW:YCBY_ECOLI (P75864) (702 aa) fasta scores: E(): 2.6e-39, 34.36% id in 387 aa. Note possible alternative downstream translational start sites; Belongs to the methyltransferase superfamily.


ensembl_gene_id: BP2376
symbol: BP2376
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); (C)6 in pertussis; (C)7 in parapertussis and bronchiseptica.


ensembl_gene_id: BP2377
symbol: BP2377
gene_biotype: protein_coding
description:
  Putative AMP-binding protein; Similar to many predicted fatty-acid-CoA ligases eg. Rhizobium meliloti putative fatty-acid-CoA ligase protein Smc00741 TR:CAC47210 (EMBL:AL591791) (548 aa) fasta scores: E(): 2.7e-92, 45.38% id in 553 aa.


ensembl_gene_id: BP2378
symbol: BP2378
gene_biotype: protein_coding
description:
  Putative transferase; Similar to Caulobacter crescentus bacterial transferase family protein cc2643 TR:Q9A526 (EMBL:AE005932) (176 aa) fasta scores: E(): 2.7e-29, 49.71% id in 173 aa, and to Escherichia coli phenylacetic acid degradation protein PaaY or b1400 SW:PAAY_ECOLI (P77181) (196 aa) fasta scores: E(): 3.6e-19, 41.35% id in 162 aa.


ensembl_gene_id: BP2379
symbol: hslO
gene_biotype: protein_coding
description:
  Putative chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: BP2381
symbol: BP2381
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr0979 protein TR:Q98LL3 (EMBL:AP002996) (138 aa) fasta scores: E(): 1.7e-09, 36.15% id in 130 aa, and to Agrobacterium tumefaciens strC58 Agr_l_1124p TR:AAK89137 (EMBL:AE008254) (137 aa) fasta scores: E(): 2.2e-09, 39.23% id in 130 aa.


ensembl_gene_id: BP2383
symbol: BP2383
gene_biotype: protein_coding
description:
  Similar to many eg. Rhizobium meliloti hypothetical protein Smb20701 TR:CAC49808 (EMBL:AL603647) (250 aa) fasta scores: E(): 1e-59, 68.67% id in 249 aa, and to Streptomyces coelicolor conserved hypothetical protein SC4B10.09C TR:Q9FC78 (EMBL:AL391515) (248 aa) fasta scores: E(): 6.5e-54, 63% id in 246 aa. Streptomyces coelicolor appears to contain many paralogues of this protein.


ensembl_gene_id: BP2384
symbol: BP2384
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to many from Rhizobium spp., one of which (SW:CYA3_RHIME) lies alongside an adenylate cyclase. It seems possible that many of the Rhizobium spp. proteins have mistakenly been predicted to be adenylate cyclases rather than transcriptional regulators. Similar to Rhizobium meliloti putative regulatory protein, possibly two-component response regulator smb20702 TR:CAC49809 (EMBL:AL603647) (554 aa) fasta scores: E(): 4.9e-103, 62.43% id in 567 aa and to Rhizobium meliloti putative adenylate cyclase 3 Cya3 or sma1583 SW:CYA3_RHIME (Q9Z3Q0) (586 aa) [...]


ensembl_gene_id: BP2385
symbol: ftsB
gene_biotype: protein_coding
description:
  Putative conserved inner membrane protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: BP2386
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: BP2387
symbol: BP2387
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein Smc00411 TR:CAC41768 (EMBL:AL591783) (95 aa) fasta scores: E(): 8.3e-08, 38.46% id in 91 aa, and to Agrobacterium tumefaciens strC58 Agr_c_513p TR:AAK86112 (EMBL:AE007968) (95 aa) fasta scores: E(): 2.2e-07, 38.46% id in 91 aa.


ensembl_gene_id: BP2388
symbol: kdsA
gene_biotype: protein_coding
description:
  Similar to many eg. Escherichia coli 2-dehydro-3-deoxyphosphooctonate aldolase KdsA or b1215 SW:KDSA_ECOLI (P17579) (284 aa) fasta scores: E(): 1.6e-45, 44.87% id in 283 aa, and to Xylella fastidiosa 2-dehydro-3-deoxyphosphooctonate aldolase xf1289 TR:Q9PDU0 (EMBL:AE003962) (295 aa) fasta scores: E(): 3.1e-76, 71.27% id in 282 aa, and to Pisum sativum 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SW:KDSA_PEA (O50044) (290 aa) fasta scores: E(): 2e-53, 54.85% id in 268 aa; Belongs to the KdsA family.


ensembl_gene_id: BP2389
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: BP2391
symbol: BP2391
gene_biotype: protein_coding
description:
  Putative aminopeptidase; Similar to many (pro- and eukaryotic) eg. Neisseria meningitidis aminopeptidase, putative nmb1428 TR:Q9JYU4 (EMBL:AE002492) (598 aa) fasta scores: E(): 4.4e-121, 53.83% id in 600 aa, and to Homo sapiens cytosolic aminopeptidase P TR:Q9NQW7 (EMBL:AF272981) (623 aa) fasta scores: E(): 1.6e-37, 38.71% id in 620 aa, and to Mus musculus cytosolic aminopeptidase P TR:AAK48945 (EMBL:AF363970) (623 aa) fasta scores: E(): 4.7e-37, 38.54% id in 620 aa.


ensembl_gene_id: BP2393
symbol: BP2393
gene_biotype: protein_coding
description:
  Putative transport protein (pseudogene); 8 bp deletion in pertussis relative to parapertussis and bronchiseptica.


ensembl_gene_id: BP2394
symbol: BP2394
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical ABC transporter permease protein YliD or b0832 SW:YLID_ECOLI (P75799) (303 aa) fasta scores: E(): 1.4e-80, 71.88% id in 281 aa, and to Bacillus firmus dipeptide transport system permease protein DppC SW:DPPC_BACFI (P94312) (304 aa) fasta scores: E(): 1.6e-45, 45.12% id in 277 aa.


ensembl_gene_id: BP2395
symbol: BP2395
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical ABC transporter permease protein YliC or b0831 SW:YLIC_ECOLI (P75798) (306 aa) fasta scores: E(): 9.4e-92, 76.47% id in 306 aa, and to Bacillus subtilis dipeptide transport system permease protein DppB or dciaB SW:DPPB_BACSU (P26903) (308 aa) fasta scores: E(): 9.5e-39, 37.25% id in 306 aa.


ensembl_gene_id: BP2396
symbol: BP2396
gene_biotype: protein_coding
description:
  Putative binding-protein-dependent transport periplasmic protein; Similar to Escherichia coli putative binding protein YliB precursor or b0830 SW:YLIB_ECOLI (P75797) (512 aa) fasta scores: E(): 1.3e-117, 57.17% id in 516 aa, and to Escherichia coli periplasmic dipeptide transport protein precursor DppA or b3544 SW:DPPA_ECOLI (P23847) (535 aa) fasta scores: E(): 2e-32, 30.54% id in 537 aa.


ensembl_gene_id: BP2397
symbol: BP2397
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding subunit; Similar to Agrobacterium tumefaciens strC58 Agr_l_685p TR:AAK88917 (EMBL:AE008234) (606 aa) fasta scores: E(): 3.4e-108, 55.39% id in 621 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YliA or b0829 SW:YLIA_ECOLI (P75796) (629 aa) fasta scores: E(): 5.9e-70, 66.98% id in 621 aa.


ensembl_gene_id: BP2398
symbol: BP2398
gene_biotype: protein_coding
description:
  Putative L-asparaginase; Similar to Vibrio cholerae asparaginase, putative vc2603 TR:Q9KNX7 (EMBL:AE004327) (326 aa) fasta scores: E(): 4.2e-47, 48.75% id in 320 aa, and to Lupinus luteus L-asparaginase SW:ASPG_LUPLU (Q9ZSD6) (325 aa) fasta scores: E(): 9.7e-40, 42.99% id in 307 aa.


ensembl_gene_id: BP2399
symbol: BP2399
gene_biotype: protein_coding
description:
  Similar to Clostridium acetobutylicum transcriptional regulators, RpiR family cac1850 TR:Q97I06 (EMBL:AE007693) (293 aa) fasta scores: E(): 1.3e-17, 33.46% id in 263 aa.


ensembl_gene_id: BP2400
symbol: BP2400
gene_biotype: protein_coding
description:
  Similar to Deinococcus radiodurans CoA transferase, subunit B dra0067 TR:Q9RZ87 (EMBL:AE001862) (209 aa) fasta scores: E(): 6.4e-61, 80.09% id in 211 aa, and to Helicobacter pylori succinyl-coa:3-ketoacid-coenzyme A transferase subunit B ScoB or hp0692 SW:SCOB_HELPY (P56007) (207 aa) fasta scores: E(): 2.8e-44, 60.76% id in 209 aa. Also similar to BP1789 (46.667% identity in 210 aa overlap), and to BP222 (49.756% identity in 205 aa overlap).


ensembl_gene_id: BP2403
symbol: BP2403
gene_biotype: protein_coding
description:
  Putative electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.


ensembl_gene_id: BP2404
symbol: BP2404
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa5343 TR:Q9HTL5 (EMBL:AE004946) (283 aa) fasta scores: E(): 2.3e-30, 42.6% id in 284 aa, and to Escherichia coli, and protein YeeZ precursor or b2016 or z3178 or ecs2818 SW:YEEZ_ECOLI (P76370) (274 aa) fasta scores: E(): 2.4e-13, 32.5% id in 283 aa.


ensembl_gene_id: BP2405
symbol: BP2405
gene_biotype: protein_coding
description:
  Putative cytochrome p450 oxidoreductase; Similar to Streptomyces galilaeus AknT TR:Q9L4U5 (EMBL:AF264025) (443 aa) fasta scores: E(): 0.0076, 28.02% id in 389 aa, and to Rhodococcus fascians cytochrome p450 Fas1 or cyp105e1 SW:FAS1_RHOFA (P46373) (399 aa) fasta scores: E(): 0.48, 23.63% id in 402 aa.


ensembl_gene_id: BP2406
symbol: BP2406
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mll4602 protein TR:Q98DQ1 (EMBL:AP003004) (114 aa) fasta scores: E(): 9.8e-29, 69.36% id in 111 aa.


ensembl_gene_id: BP2407
symbol: ltaE
gene_biotype: protein_coding
description:
  Similar to Escherichia coli low-specificity L-threonine aldolase LtaE or b0870 SWALL:LTAE_ECOLI (SWALL:P75823) (333 aa) fasta scores: E(): 8.3e-65, 55.49% id in 337 aa, and to Pseudomonas aeruginosa L-allo-threonine aldolase Gly1 or pa0902 SWALL:O50178 (EMBL:AF011922) (334 aa) fasta scores: E(): 2e-69, 61.81% id in 330 aa.


ensembl_gene_id: BP2408
symbol: BP2408
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to several including: Escherichia coli O157:H7 EDL933 hypothetical protein YijE TR:AAG59144 (EMBL:AE005625) (312 aa) fasta scores: E(): 5.7e-41, 44.01% id in 284 aa and to Escherichia coli hypothetical protein YijE or b3943 SW:YIJE_ECOLI (P32667) (301 aa) fasta scores: E(): 9.6e-41, 44.01% id in 284 aa.


ensembl_gene_id: BP2409
symbol: acsA
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: BP2411
symbol: BP2411
gene_biotype: protein_coding
description:
  Putative integral membrane protein (pseudogene); AA in pertussis; AA(TA) in parapertussis and bronchiseptica.


ensembl_gene_id: BP2414
symbol: BP2414
gene_biotype: protein_coding
description:
  Similar to Campylobacter jejuni hypothetical protein Cj1384C TR:Q9PMR6 (EMBL:AL139078) (104 aa) fasta scores: E(): 0.0014, 30.58% id in 85 aa and to Clostridium acetobutylicum predicted diverged chey-domain Cac1602 TR:Q97IN8 (EMBL:AE007670) (103 aa) fasta scores: E(): 1.4e-07, 34.06% id in 91 aa.


ensembl_gene_id: BP2416
symbol: BP2416
gene_biotype: protein_coding
description:
  Similar to several LysR-family transcriptional regulators including: Pseudomonas aeruginosa CysB or pa1754 TR:O05926 (EMBL:U95379) (324 aa) fasta scores: E(): 1.6e-49, 46.45% id in 310 aa and to Salmonella typhimurium cys regulon transcriptional activator CysB or Stm1713 SW:CYSB_SALTY (P06614) (324 aa) fasta scores: E(): 6.7e-49, 45.68% id in 313 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2417
symbol: BP2417
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Highly similar to Eukaryotic methylmalonate semi-aldehyde dehydrogenases. Note as you would expect the predicted product of this CDS lacks the N-terminal Mitochondrial targeting signal sequence possessed by the Eukaryotic proteins. Similar to Arabidopsis thaliana putative methylmalonate semi-aldehyde dehydrogenase At2g14170 TR:Q9SI43 (EMBL:AC007197) (607 aa) fasta scores: E(): 4.5e-113, 56.87% id in 487 aa and to Homo sapiens methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial precursor MmsdH SW:MMSA_HUMAN (Q02252) (535 aa) fasta scores: E(): 1 [...]


ensembl_gene_id: BP2418
symbol: BP2418
gene_biotype: protein_coding
description:
  Similar to many members of the ABC family of transport proteins incuding: Rhizobium meliloti putative periplasmic binding ABC transporter protein Smc03121 TR:CAC47551 (EMBL:AL591792) (401 aa) fasta scores: E(): 3.7e-75, 50.5% id in 394 aa and to Azoarcus evansii putative substrate binding protein TR:AAL02070 (EMBL:AF320253) (391 aa) fasta scores: E(): 1.5e-13, 25.26% id in 372 aa.


ensembl_gene_id: BP2419
symbol: BP2419
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa3711 SWALL:Q9HXT0 (EMBL:AE004790) (301 aa) fasta scores: E(): 7.6e-46, 43.37% id in 302 aa, and to Rhizobium meliloti putative transcription regulator protein R02971 or Smc03122 SWALL:Q92LQ9 (EMBL:AL591792) (315 aa) fasta scores: E(): 2.4e-42, 39.93% id in 303 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2420
symbol: BP2420
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to Neisseria meningitidis hypothetical protein Nmb1570 TR:Q9JYI6 (EMBL:AE002507) (371 aa) fasta scores: E(): 1.6e-33, 32.86% id in 359 aa and to Neisseria meningitidis conserved integral membrane hypothetical protein Nma1759 TR:Q9JTI7 (EMBL:AL162757) (371 aa) fasta scores: E(): 2.1e-33, 32.78% id in 363 aa.


ensembl_gene_id: BP2421
symbol: pepA
gene_biotype: protein_coding
description:
  Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: BP2422
symbol: BP2422
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein Smc00586 TR:CAC45735 (EMBL:AL591786) (149 aa) fasta scores: E(): 8.8e-06, 29.8% id in 151 aa and weakly to Escherichia coli DNA polymerase III, chi subunit HolC or b4259 SW:HOLC_ECOLI (P28905) (147 aa) fasta scores: E(): 0.00013, 26.24% id in 141 aa.


ensembl_gene_id: BP2424
symbol: BP2424
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to several including: Escherichia coli hypothetical protein YccA or b0970 SW:YCCA_ECOLI (P06967) (219 aa) fasta scores: E(): 3.5e-22, 42.38% id in 210 aa and to Escherichia coli O157:H7 putative carrier/transport protein Ecs1054 TR:BAB34477 (EMBL:AP002554) (219 aa) fasta scores: E(): 4.6e-22, 42.38% id in 210 aa; Belongs to the BI1 family.


ensembl_gene_id: BP2425
symbol: BP2425
gene_biotype: protein_coding
description:
  Putative exported protein; Similar in parts to Rhizobium meliloti hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.2e-45, 43.75% id in 320 aa, and to Alcaligenes eutrophus hypothetical 35.7 kDa protein MacB TR:Q9RBG2 (EMBL:AF130250) (340 aa) fasta scores: E(): 1.4e-36, 38.65% id in 313 aa.


ensembl_gene_id: BP2426
symbol: BP2426
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Weakly similar to several proteins of undefined function including: Agrobacterium tumefaciens StrC58 TR:AAK90609 (EMBL:AE007893) (335 aa) fasta scores: E(): 5.1e-19, 31.81% id in 286 aa, and to Rhizobium loti Mlr7142 protein TR:Q987A0 (EMBL:AP003011) (349 aa) fasta scores: E(): 1.6e-16, 29.24% id in 277 aa.


ensembl_gene_id: BP2428
symbol: BP2428
gene_biotype: protein_coding
description:
  Transposase for IS481 element (pseudogene); HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2430
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: BP2431
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: BP2432
symbol: lep
gene_biotype: protein_coding
description:
  Signal peptidase I; Previously sequenced Bordetella pertussis leader peptidase Lep TR:Q9RN42 (EMBL:AF188620) (294 aa) fasta scores: E(): 1.9e-121, 100% id in 294 aa. Highly similar to Escherichia coli signal peptidase I LepB or b2568 SW:LEP_ECOLI (P00803) (324 aa) fasta scores: E(): 3.7e-22, 41.81% id in 342 aa, and to; Belongs to the peptidase S26 family.


ensembl_gene_id: BP2433
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: BP2434
symbol: mucD
gene_biotype: protein_coding
description:
  Serine protease; Similar to Pseudomonas aeruginosa serine protease MucD or Pa0766 TR:Q57155 (EMBL:U49151) (474 aa) fasta scores: E(): 1.4e-63, 45.88% id in 486 aa and to Azotobacter vinelandii MucD TR:Q44476 (EMBL:U30799) (473 aa) fasta scores: E(): 2.4e-47, 37.89% id in 504 aa; Belongs to the peptidase S1C family.


ensembl_gene_id: BP2435
symbol: mucB
gene_biotype: protein_coding
description:
  Putative sigma factor regulatory protein; Similar to many regulators of rpoE/algU which is located upstream, including: Azotobacter vinelandii MucB TR:Q9RCH6 (EMBL:U22660) (317 aa) fasta scores: E(): 4.7e-15, 32.11% id in 327 aa and Escherichia coli sigma-e factor regulatory protein RseB precursor SW:RSEB_ECOLI (P46186) (318 aa) fasta scores: E(): 9.5e-10, 25.32% id in 308 aa.


ensembl_gene_id: BP2437
symbol: sigE
gene_biotype: protein_coding
description:
  Similar to many RNA polymerase sigma factors including: Pseudomonas aeruginosa AlgU or AlgT or Pa0762 SW:RPSH_PSEAE (Q06198) (193 aa) fasta scores: E(): 1.3e-40, 63.02% id in 192 aa and to Escherichia coli RpoE or SigE or b2573 or z3855 or ecs3439 SW:RPOE_ECOLI (P34086) (191 aa) fasta scores: E(): 3.2e-37, 55.49% id in 191 aa; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: BP2438
symbol: BP2438
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Weakly similar to Gallus gallus transport associated protein 2 Tap2 TR:O73903 (EMBL:AL023516) (701 aa) fasta scores: E(): 1.6, 32.21% id in 149 aa and to Streptomyces coelicolor putative integral membrane protein Sc3c9.20C TR:CAC42759 (EMBL:AL592262) (618 aa) fasta scores: E(): 3.8, 32.94% id in 173 aa.


ensembl_gene_id: BP2439
symbol: fabF
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: BP2440
symbol: acpP
gene_biotype: protein_coding
description:
  Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: BP2441
symbol: fabG-4
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: BP2442
symbol: fabD
gene_biotype: protein_coding
description:
  Highly similar to Escherichia coli malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 SW:FABD_ECOLI (P25715) (308 aa) fasta scores: E(): 2.9e-55, 58.36% id in 305 aa and to Salmonella typhimurium malonyl CoA-acyl carrier protein transacylase FabD or Stm1194 SW:FABD_SALTY (O85140) (308 aa) fasta scores: E(): 6.9e-56, 59.01% id in 305 aa.


ensembl_gene_id: BP2443
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: BP2444
symbol: plsX
gene_biotype: protein_coding
description:
  Putative fatty acid synthesis protein; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: BP2445
symbol: rpmF
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis 50s ribosomal protein l32 RpmF or Nma0544 SW:RL32_NEIMA (Q9JW52) (58 aa) fasta scores: E(): 1e-15, 70.69% id in 58 aa and Pseudomonas aeruginosa 50s ribosomal protein l32 RpmF or Pa2970 SW:RL32_PSEAE (Q9HZN4) (59 aa) fasta scores: E(): 2.1e-13, 64.4% id in 59 aa; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: BP2446
symbol: BP2446
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Weakly similar to Neisseria meningitidis hypothetical protein Nma0545 TR:Q9JW51 (EMBL:AL162753) (167 aa) fasta scores: E(): 2e-07, 30.38% id in 181 aa and to Escherichia coli hypothetical protein YceD or b1088 or z1727 or Ecs1466 SW:YCED_ECOLI (P14189) (173 aa) fasta scores: E(): 3.7e-07, 39.82% id in 113 aa.


ensembl_gene_id: BP2447
symbol: Maf-2
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.


ensembl_gene_id: BP2448
symbol: BP2448
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many including: Neisseria meningitidis hypothetical protein Nmb1908 TR:Q9JXS3 (EMBL:AE002540) (241 aa) fasta scores: E(): 2.4e-36, 47.45% id in 236 aa. Also similar to many proposed methyltransferases e.g. Chlamydia trachomatis SAM-dependent methyltransferase YraL or Ct048 TR:O84051 (EMBL:AE001279) (237 aa) fasta scores: E(): 1.3e-19, 38.75% id in 240 aa.


ensembl_gene_id: BP2449
symbol: BP2449
gene_biotype: protein_coding
description:
  Putative exported hydrolase; Similar to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase YbjR or b0867 SW:YBJR_ECOLI (P75820) (276 aa) fasta scores: E(): 7.3e-29, 43.79% id in 274 aa, and to Caulobacter crescentus N-acetylmuramoyl-L-alanine amidase Cc2567 TR:Q9A590 (EMBL:AE005925) (242 aa) fasta scores: E(): 5.2e-16, 42.55% id in 235 aa.


ensembl_gene_id: BP2451
symbol: BP2451
gene_biotype: protein_coding
description:
  C-terminal region of a putative membrane protein (pseudogene); 5 probable transmembrane helices predicted for BP2450 by TMHMM2.0 at aa 249-271, 284-303, 308-325, 332-354 and 364-381.


ensembl_gene_id: BP2452
symbol: BP2452
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several including: Vibrio cholerae hypothetical protein Vc2355 vc2355 TR:Q9KPL2 (EMBL:AE004305) (257 aa) fasta scores: E(): 1.3e-51, 51.56% id in 256 aa, and to Escherichia coli protein yaaa yaaa or b0006 SW:YAAA_ECOLI (P11288) (258 aa) fasta scores: E(): 2.5e-51, 52.36% id in 254 aa; Belongs to the UPF0246 family.


ensembl_gene_id: BP2454
symbol: BP2454
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to Alcaligenes eutrophus D-beta-hydroxybutyrate dehydrogenase HbdH1 SW:BDHA_ALCEU (Q9X6U2) (258 aa) fasta scores: E(): 7.9e-57, 63.84% id in 260 aa and to Rhizobium meliloti D-beta-hydroxybutyrate dehydrogenase BdhA or Rb1136 or Smb21010 SW:BDHA_RHIME (O86034) (258 aa) fasta scores: E(): 1e-45, 54.29% id in 256 aa.


ensembl_gene_id: BP2455
symbol: BP2455
gene_biotype: protein_coding
description:
  Putative membrane efflux protein; Similar to Escherichia coli glutathione-regulated potassium-efflux system protein KefB or TrkB or b3350 SW:KEFB_ECOLI (P45522) (601 aa) fasta scores: E(): 2.2e-55, 45.78% id in 380 aa and to Vibrio cholerae glutathione-regulated potassium-efflux system protein KefB vc2606 TR:Q9KNX4 (EMBL:AE004327) (656 aa) fasta scores: E(): 2.8e-53, 46.25% id in 387 aa.


ensembl_gene_id: BP2456
symbol: alcA
gene_biotype: protein_coding
description:
  Alcaligin biosynthesis enzyme; Previously sequenced in Bordetella bronchiseptica alcaligin biosynthesis enzyme AlcA SW:ALCA_BORBR (Q44740) (461 aa) fasta scores: E(): 1.4e-197, 100% id in 461 aa. Also similar to Escherichia coli L-lysine 6-monooxygenase IucD or AerA SW:IUCD_ECOLI (P11295) (425 aa) fasta scores: E(): 2.5e-37, 28.97% id in 428 aa.


ensembl_gene_id: BP2457
symbol: alcB
gene_biotype: protein_coding
description:
  Alcaligin biosynthesis protein; Previously sequenced in Bordetella bronchiseptica AlcB iron siderophore alcaligin biosynthetic protein TR:P94254 (EMBL:U61153) (201 aa) fasta scores: E(): 7.8e-87, 100% id in 201 aa. Also similar to Escherichia coli aerobactin siderophore biosynthesis protein IucB SW:IUCB_ECOLI (Q47317) (315 aa) fasta scores: E(): 1.1e-05, 24.4% id in 168 aa.


ensembl_gene_id: BP2458
symbol: alcC
gene_biotype: protein_coding
description:
  Alcaligin biosynthesis protein; Previously sequenced in Bordetella bronchiseptica AlcC iron siderophore alcaligin biosynthesis protein TR:P94255 (EMBL:U61153) (618 aa) fasta scores: E(): 0, 99.83% id in 618 aa. Also similar to Echerichia coli aerobactin siderophore biosynthesis protein IucC SW:IUCC_ECOLI (Q47318) (580 aa) fasta scores: E(): 8.9e-46, 28.57% id in 595 aa.


ensembl_gene_id: BP2459
symbol: alcD
gene_biotype: protein_coding
description:
  Hypothetical protein; Previously sequenced in Bordetella bronchiseptica hypothetical protein AlcD predicted to be involved in the iron siderophore alcaligin biosynthesis TR:O52832 (EMBL:AJ000061) (267 aa) fasta scores: E(): 3.7e-105, 93.63% id in 267 aa.


ensembl_gene_id: BP2460
symbol: alcE
gene_biotype: protein_coding
description:
  Putative iron-sulfur protein; Previously sequenced in Bordetella bronchiseptica AlcE, involved in the iron siderophore alcaligin biosynthesis, TR:O52833 (EMBL:AJ000061) (397 aa) fasta scores: E(): 7.3e-176, 99.74% id in 397 aa. Also similar to BP2804, 71.842% identity in 380 aa overlap.


ensembl_gene_id: BP2461
symbol: alcR
gene_biotype: protein_coding
description:
  Transcriptional regulator; Previously sequenced Bordetella pertussis AlcR the regulator of alcaligin siderophore biosynthesis TR:O52066 (EMBL:AF018255) (324 aa) fasta scores: E(): 3.4e-130, 100% id in 324 aa.


ensembl_gene_id: BP2462
symbol: bcr
gene_biotype: protein_coding
description:
  Putative drug resistance translocase; Previously sequenced in Bordetella bronchiseptica Bcr protein TR:O52835 (EMBL:AJ000061) (110 aa) fasta scores: E(): 4.8e-35, 96.36% id in 110 aa. Note the differing C-termini. Also similar to Escherichia coli bicyclomycin resistance protein Bcr or BicR or BicR or Sur or SuxA or b2182 SW:BCR_ECOLI (P28246) (396 aa) fasta scores: E(): 1.1e-25, 29.41% id in 391 aa.


ensembl_gene_id: BP2463
symbol: fauA
gene_biotype: protein_coding
description:
  Previously sequenced Bordetella pertussis ferric alcaligin siderophore receptor FauA TR:Q9X6A5 (EMBL:AF135154) (734 aa) fasta scores: E(): 0, 100% id in 734 aa.


ensembl_gene_id: BP2464
symbol: mar
gene_biotype: protein_coding
description:
  Possible membrane efflux protein; Similar to many proteins involved in multiple antibiotic resistance including: Salmonella typhimurium multiple antibiotic resistance protein MarC SW:MARC_SALTY (Q56068) (221 aa) fasta scores: E(): 6.2e-17, 29.68% id in 219 aa and to Escherichia coli multiple antibiotic resistance protein MarC SW:MARC_ECOLI (P31123) (221 aa) fasta scores: E(): 1.5e-16, 30.18% id in 222 aa. Previously sequenced as Bordetella pertussis putative multiple antibiotic resistance protein Mar TR:Q9X6A6 (EMBL:AF135154) (132 aa) fasta scores: E(): 1.2e-36, 100% id in 111 aa. Note [...]


ensembl_gene_id: BP2465
symbol: BP2465
gene_biotype: protein_coding
description:
  Hypothetical protein; Database similarities to the predicted product o fthis CDS covers a region defined by the PFAM motif PF00990, GGDEF domain, the function of which is unknown. Similar in parts to several regulators including: Rhizobium meliloti putative response regulator sma2301 TR:AAK65897 (EMBL:AE007308) (448 aa) fasta scores: E(): 1e-16, 42.16% id in 185 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1107 pa1107 TR:Q9I4M8 (EMBL:AE004541) (398 aa) fasta scores: E(): 1.1e-16, 38.91% id in 185 aa.


ensembl_gene_id: BP2467
symbol: BP2467
gene_biotype: protein_coding
description:
  Hypothetical protein; Weakly similar to Xylella fastidiosa phage-related protein Xf0485 TR:Q9PG17 (EMBL:AE003898) (181 aa) fasta scores: E(): 3e-06, 29.18% id in 185 aa.


ensembl_gene_id: BP2468
symbol: vrg-6
gene_biotype: protein_coding
description:
  Virulence protein; Previously sequenced Bordetella pertussis virulence related protein, Vrg-6 TR:Q45395 (EMBL:M77374) (105 aa) fasta scores: E(): 4.2e-36, 100% id in 105 aa.


ensembl_gene_id: BP2470
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: BP2471
symbol: BP2471
gene_biotype: protein_coding
description:
  Similar to Burkholderia solanacearum conserved hypothetical protein Rsc2338 TR:CAD16045 (EMBL:AL646069) (449 aa) fasta scores: E(): 1e-98, 67.92% id in 452 aa, and to Salmonella enterica subspenterica serovar Typhi conserved hypothetical protein Sty0960 TR:CAD05362 (EMBL:AL627268) (447 aa) fasta scores: E(): 8.5e-76, 54.34% id in 449 aa.


ensembl_gene_id: BP2472
symbol: lolA
gene_biotype: protein_coding
description:
  Putative exported protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: BP2473
symbol: ftsK
gene_biotype: protein_coding
description:
  Putative cell division protein; Similar to many including: Burkholderia solanacearum probable cell division transmembrane protein FtsK TR:CAD16048 (EMBL:AL646069) (781 aa) fasta scores: E(): 1.1e-166, 66.62% id in 785 aa, and to Coxiella burnetii cell division protein FtsK SW:FTSK_COXBU (P39920) (778 aa) fasta scores: E(): 3.8e-125, 47.78% id in 766 aa. Also similar to the C-terminal of Escherichia coli cell division protein Ftsk or b0890 SW:FTSK_ECOLI (P46889) (1329 aa) fasta scores: E(): 5.4e-111, 60.81% id in 541 aa.


ensembl_gene_id: BP2474
symbol: trxB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli thioredoxin reductase TrxB or b0888 or z1232 or Ecs0973 SW:TRXB_ECOLI (P09625) (320 aa) fasta scores: E(): 1e-84, 71.65% id in 314 aa, and to Vibrio cholerae thioredoxin reductase Vc1182 TR:Q9KSS4 (EMBL:AE004198) (318 aa) fasta scores: E(): 1.9e-90, 73.04% id in 319 aa.


ensembl_gene_id: BP2475
symbol: BP2475
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to several including: Xylella fastidiosa hypothetical protein Xf1295 TR:Q9PDT4 (EMBL:AE003963) (180 aa) fasta scores: E(): 1.4e-10, 37.85% id in 177 aa and to Neisseria meningitidis hypothetical protein Nma1237 TR:Q9JUM1 (EMBL:AL162755) (201 aa) fasta scores: E(): 5.3e-08, 31.6% id in 212 aa.


ensembl_gene_id: BP2476
symbol: BP2476
gene_biotype: protein_coding
description:
  Putative mebrane transport protein; Similar to Escherichia coli quaternary ammonium compound-resistance protein QacE SW:QACE_ECOLI (Q57225) (110 aa) fasta scores: E(): 1.4e-20, 58.18% id in 110 aa and to Pseudomonas aeruginosa GacE2 protein TR:Q9ZEH0 (EMBL:AJ223604) (110 aa) fasta scores: E(): 3.3e-21, 57.27% id in 110 aa.


ensembl_gene_id: BP2478
symbol: BP2478
gene_biotype: protein_coding
description:
  Putative membrane transport protein; Similar to Aquifex aeolicus Na Ssf or aq_2106 TR:O67873 (EMBL:AE000773) (487 aa) fasta scores: E(): 2e-25, 38.81% id in 572 aa and to Escherichia coli putative symporter YjcG or b4067 SW:YJCG_ECOLI (P32705) (549 aa) fasta scores: E(): 1.1e-13, 24.57% id in 639 aa; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: BP2480
symbol: kdpA
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase A chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: BP2481
symbol: kdpB
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase B chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: BP2482
symbol: kdpC
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: BP2483
symbol: kdpD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli sensor protein KdpD or b0695 SW:KDPD_ECOLI (P21865) (894 aa) fasta scores: E(): 1.2e-68, 46.35% id in 863 aa and to Burkholderia solanacearum probable two-component sensor kinase KdpD transcription regulator protein TR:CAD16882 (EMBL:AL646075) (937 aa) fasta scores: E(): 1.6e-84, 58.87% id in 885 aa.


ensembl_gene_id: BP2484
symbol: kdpE
gene_biotype: protein_coding
description:
  Similar to Escherichia coli Kdp operon (involved in potassium transport) transcriptional regulatory protein KdpE or b0694 SW:KDPE_ECOLI (P21866) (225 aa) fasta scores: E(): 2.9e-54, 63.8% id in 221 aa and to Escherichia coli O157:H7 EDL933 regulator of Kdp operon KdpE TR:AAG55015 (EMBL:AE005247) (225 aa) fasta scores: E(): 4.5e-54, 63.34% id in 221 aa.


ensembl_gene_id: BP2486
symbol: BP2486
gene_biotype: protein_coding
description:
  Putative exported protein; Weakly similar to Haemophilus influenzae hypothetical protein Hi0874 SW:Y874_HAEIN (P44067) (399 aa) fasta scores: E(): 1.4e-09, 22.42% id in 223 aa.


ensembl_gene_id: BP2487
symbol: BP2487
gene_biotype: protein_coding
description:
  Hypothetical protein; Weakly similar to Aquifex aeolicus hypothetical 30.0 kDa protein Aq_362 TR:O66687 (EMBL:AE000686) (265 aa) fasta scores: E(): 1.1e-05, 29.38% id in 211 aa.


ensembl_gene_id: BP2488
symbol: icd
gene_biotype: protein_coding
description:
  Similar to Escherichia coli isocitrate dehydrogenase [NADP] Icd or IcdA or IcdE or b1136 SW:IDH_ECOLI (P08200) (416 aa) fasta scores: E(): 4.7e-116, 71.91% id in 413 aa, and to Pseudomonas aeruginosa isocitrate dehydrogenase icd or pa2623 TR:Q9I0L5 (EMBL:AE004691) (418 aa) fasta scores: E(): 5.3e-123, 76.31% id in 418 aa.


ensembl_gene_id: BP2489
symbol: BP2489
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nma1720 TR:Q9JTL8 (EMBL:AL162756) (156 aa) fasta scores: E(): 5.3e-17, 40.58% id in 138 aa.


ensembl_gene_id: BP2490
symbol: BP2490
gene_biotype: protein_coding
description:
  Similar in parts to many cytochromes including: to Vibrio cholerae cytochrome C554 Vc2241 TR:Q9KPX1 (EMBL:AE004296) (107 aa) fasta scores: E(): 4.7e-06, 41.07% id in 112 aa and to Pseudomonas stutzeri cytochrome C4 precursor Cc4 SW:CYC4_PSEST (Q52369) (210 aa) fasta scores: E(): 2.2e-05, 32.71% id in 107 aa.


ensembl_gene_id: BP2491
symbol: BP2491
gene_biotype: protein_coding
description:
  Similar in parts to many cytochromes including: Burkholderia solanacearum putative periplasmic cytochrome type-C oxidoreductase Srsc0999 TR:CAD14701 (EMBL:AL646062) (115 aa) fasta scores: E(): 3.2e-21, 64.7% id in 102 aa and to Paracoccus sp cytochrome C-554 SW:C554_PARSP (P00105) (83 aa) fasta scores: E(): 3.8e-07, 41.66% id in 84 aa.


ensembl_gene_id: BP2493
symbol: BP2493
gene_biotype: protein_coding
description:
  Putative ATP-binding protein; Similar to many including: Burkholderia solanacearum conserved hypothetical protein Rsc0998 TR:CAD14700 (EMBL:AL646062) (290 aa) fasta scores: E(): 1.9e-79, 76.4% id in 284 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2707 TR:Q9I0D5 (EMBL:AE004698) (281 aa) fasta scores: E(): 7.7e-74, 71.42% id in 280 aa.


ensembl_gene_id: BP2494
symbol: BP2494
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Highly similar to several including: Rhizobium loti Mlr3961 protein TR:Q98F34 (EMBL:AP003003) (396 aa) fasta scores: E(): 8.7e-89, 57.97% id in 395 aa and to Pseudomonas aeruginosa hypothetical protein Pa2705 TR:Q9I0D7 (EMBL:AE004698) (393 aa) fasta scores: E(): 2.7e-88, 55.58% id in 394 aa.


ensembl_gene_id: BP2495
symbol: BP2495
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Staphylococcus aureus (strain N315) protein Sa2317 or Sav2529 TR:BAB58691 (EMBL:AP003137) (163 aa) fasta scores: E(): 1.3e-29, 47.53% id in 162 aa, Escherichia coli O157:H7 putative resistance protein Ecs2052 TR:BAB35475 (EMBL:AP002557) (172 aa) fasta scores: E(): 3.3e-23, 45.28% id in 159 aa and to Rhizobium meliloti putative acetyltransferase Smc01229 TR:CAC46141 (EMBL:AL591787) (169 aa) fasta scores: E(): 2.4e-22, 43.13% id in 153 aa.


ensembl_gene_id: BP2497
symbol: BP2497
gene_biotype: protein_coding
description:
  Putative zinc protease; Similar to many proposed proteases including: Deinococcus radiodurans protease DR1598 TR:Q9RTZ9 (EMBL:AE002003) (951 aa) fasta scores: E(): 4.7e-130, 42.77% id in 886 aa and to Rhodothermus sp protease PrT TR:Q9ZIG1 (EMBL:AF028721) (300 aa) fasta scores: E(): 1.5e-28, 42.24% id in 258 aa; Belongs to the peptidase M16 family.


ensembl_gene_id: BP2498
symbol: dnaJ
gene_biotype: protein_coding
description:
  Molecular chaperone; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...]


ensembl_gene_id: BP2500
symbol: BP2500
gene_biotype: protein_coding
description:
  Weakly similar to several thioredoxins including: Rhodospirillum rubrum thioredoxin TrxA SW:THIO_RHORU (P10473) (104 aa) fasta scores: E(): 0.073, 27.000% id in 100 aa.


ensembl_gene_id: BP2501
symbol: grpE
gene_biotype: protein_coding
description:
  Putative GrpE chaperone; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...]


ensembl_gene_id: BP2503
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: BP2504
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: BP2505
symbol: ppnK
gene_biotype: protein_coding
description:
  Probable inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: BP2507
symbol: fur
gene_biotype: protein_coding
description:
  Ferric ion uptake regulator; Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes.


ensembl_gene_id: BP2508
symbol: omlA
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: BP2509
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.


ensembl_gene_id: BP2511
symbol: BP2511
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to several including: Caulobacter crescentus hydrolase, alpha/beta hydrolase fold family CC2797 TR:Q9A4N3 (EMBL:AE005945) (269 aa) fasta scores: E(): 1.9e-15, 28.782% id in 271 aa.


ensembl_gene_id: BP2512
symbol: BP2512
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several e.g. Bacillus subtilis hypothetical 47.8 kDa protein YxeQ or lp9I SW:YXEQ_BACSU (P54956) (445 aa) fasta scores: E(): 3.8e-31, 30.588% id in 425 aa.


ensembl_gene_id: BP2513
symbol: BP2513
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.2e-42, 38.889% id in 324 aa.


ensembl_gene_id: BP2514
symbol: purU
gene_biotype: protein_coding
description:
  Putative formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: BP2515
symbol: soxG
gene_biotype: protein_coding
description:
  Weakly similar to Rhizobium loti sarcosine oxidase gamma subunit Mlr1276 TR:Q98KX5 (EMBL:AP002997) (195 aa) fasta scores: E(): 0.0011, 27.273% id in 187 aa.


ensembl_gene_id: BP2516
symbol: soxA
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti sarcosine oxidase alpha subunit SoxA or r00083 or smc02606 SW:SOXA_RHIME (O87386) (987 aa) fasta scores: E(): 5.8e-146, 46.479% id in 994 aa; Belongs to the GcvT family.


ensembl_gene_id: BP2517
symbol: soxD
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti sarcosine oxidase delta subunit SoxD or r00084 or smc02607 SW:SOXD_RHIME (O87387) (92 aa) fasta scores: E(): 4.4e-14, 52.113% id in 71 aa.


ensembl_gene_id: BP2518
symbol: soxB
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti sarcosine oxidase beta subunit SoxB or r00085 or smc02608 SW:SAOX_RHIME (O87388) (416 aa) fasta scores: E(): 7.9e-109, 64.269% id in 417 aa.


ensembl_gene_id: BP2519
symbol: BP2519
gene_biotype: protein_coding
description:
  Similar to many putative and proven dipeptidases from Prokaryotes and Eukaryotes e.g Rhizobium meliloti putative dipeptidase protein Smc03264 TR:CAC47695 (EMBL:AL591792) (336 aa) fasta scores: E(): 7.1e-25, 27.976% id in 336 aa and Mus musculus microsomal dipeptidase precursor Dpep1 SW:MDP1_MOUSE (P31428) (410 aa) fasta scores: E(): 1.5e-15, 30.943% id in 265 aa. Note codon 13 offers an alternative translational start site.


ensembl_gene_id: BP2520
symbol: BP2520
gene_biotype: protein_coding
description:
  Similar to many members of the LysR-family of regulatory proteins including: Mycobacterium marinum probable hydrogen peroxide-inducible genes activator OxyR SW:OXYR_MYCMR (O87324) (311 aa) fasta scores: E(): 2.3e-13, 27.899% id in 276 aa and Acinetobacter lwoffii probable cat1 operon transcriptional activator CatR SW:CATR_ACILW (O33945) (303 aa) fasta scores: E(): 3.7e-12, 26.101% id in 318 aa.


ensembl_gene_id: BP2521
symbol: BP2521
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Weakly similar to several including: Methanothermus fervidus malate dehydrogenase Mdh SW:MDH_METFE (P16142) (339 aa) fasta scores: E(): 7e-27, 31.212% id in 330 aa; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: BP2523
symbol: BP2523
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to several proteins of undefined function e.g. Comamonas testosteroni Orf4 protein TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 4.5e-28, 31.975% id in 319 aa.


ensembl_gene_id: BP2525
symbol: BP2525
gene_biotype: protein_coding
description:
  N-terminal region of a putative membrane protein (pseudogene); This CDS is disrupted by the insertion of IS481. The C-terminal region of this CDS is BP1081.


ensembl_gene_id: BP2526
symbol: BP2526
gene_biotype: protein_coding
description:
  Probable secretory protein (pseudogene); HMMPfam hit to PF00498, FHA domain; Belongs to the bacterial secretin family.


ensembl_gene_id: BP2527
symbol: BP2527
gene_biotype: protein_coding
description:
  Putative secretory protein; Weakly similar to several e.g. Rhizobium meliloti putative pilus assembly signal peptide protein TR:CAC41527 (EMBL:AL591782) (269 aa) fasta scores: E(): 0.014, 24.545% id in 220 aa.


ensembl_gene_id: BP2529
symbol: BP2529
gene_biotype: protein_coding
description:
  Putative exported protein (pseudogene); Signal peptide predicted for BP2528 by SignalP 2.0 HMM (Signal peptide probabilty 0.972) with cleavage site probability 0.678 between residues 30 and 31.


ensembl_gene_id: BP2530
symbol: BP2530
gene_biotype: protein_coding
description:
  Integral membrane protein; Similar to the N-terminus of Xylella fastidiosa fimbrial protein xf2542 TR:Q9PAH6 (EMBL:AE004061) (148 aa) fasta scores: E(): 0.68, 36.364% id in 77 aa.


ensembl_gene_id: BP2531
symbol: ecnB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli bacteriolytic toxin entericidin B precursor EcnB or B4147.2 SW:ECNB_ECOLI (P56549) (48 aa) fasta scores: E(): 0.0016, 44.444% id in 45 aa and Citrobacter freundii entericidin B precursor EcnB SW:ECNB_CITFR (P56550) (48 aa) fasta scores: E(): 0.0064, 42.222% id in 45 aa. Note in E. coli ecnB is located next to the anti-toxin ecnA. This is not the situation in B. pertusis. However, B. pertusis possess two possible ecnA paralogues BP0527 and BP2565.


ensembl_gene_id: BP2532
symbol: BP2532
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many proteins of unproven function including: Escherichia coli O157:H7 putative isomerase Ecs3029 TR:BAB36452 (EMBL:AP002560) (233 aa) fasta scores: E(): 1.5e-60, 63.755% id in 229 aa and Caulobacter crescentus fumarylacetoacetate hydrolase family protein cc3567 TR:Q9A2J4 (EMBL:AE006015) (226 aa) fasta scores: E(): 9.1e-47, 54.911% id in 224 aa.


ensembl_gene_id: BP2533
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: BP2534
symbol: BP2534
gene_biotype: protein_coding
description:
  Putative exported protein; Weakly similar to several including: Escherichia coli HemY protein involved in porphyrin biosynthesis SW:HEMY_ECOLI (P09128) (398 aa) fasta scores: E(): 2.6e-09, 24.165% id in 389 aa and Pseudomonas aeruginosa hypothetical protein Pa5257 TR:Q9HTT8 (EMBL:AE004938) (412 aa) fasta scores: E(): 6.1e-14, 29.882% id in 425 aa.


ensembl_gene_id: BP2536
symbol: BP2536
gene_biotype: protein_coding
description:
  Putative uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: BP2537
symbol: HemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: BP2538
symbol: BP2538
gene_biotype: protein_coding
description:
  Integral membrane protein; Similar to several e.g. Pseudomonas aeruginosa hypothetical protein Pa1170 TR:Q9I4G7 (EMBL:AE004547) (244 aa) fasta scores: E(): 6.1e-43, 52.790% id in 233 aa. Also similar to BP1646 (69.456% identity in 239 aa), and to BP2539 (46.222% identity in 225 aa).


ensembl_gene_id: BP2539
symbol: BP2539
gene_biotype: protein_coding
description:
  Integral membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa1170 pa1170 TR:Q9I4G7 (EMBL:AE004547) (244 aa) fasta scores: E(): 1.1e-34, 51.092% id in 229 aa. Also similar to BP2538 (46.222% identity in 225 aa), and to BP1646 45.982% identity in 239 aa.


ensembl_gene_id: BP2540
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: BP2541
symbol: sucC
gene_biotype: protein_coding
description:
  Succinyl-CoA synthetase, beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: BP2542
symbol: BP2542
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum hypothetical protein Rsc0553 or Rs04912 SWALL:Q8Y1Y4 (EMBL:AL646059) (208 aa) fasta scores: E(): 1.3e-24, 48.14% id in 189 aa.


ensembl_gene_id: BP2543
symbol: metE
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate--homocyst eine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: BP2544
symbol: metR
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein; Similar to Pseudomonas putida transcriptional activator MetR TR:Q9AF88 (EMBL:AF363278) (309 aa) fasta scores: E(): 4e-71, 56.863% id in 306 aa, and to Escherichia coli, and transcriptional activator protein MetR SW:METR_ECOLI (P19797) (317 aa) fasta scores: E(): 2.4e-46, 43.607% id in 305 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2546
symbol: recA
gene_biotype: protein_coding
description:
  RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: BP2547
symbol: BP2547
gene_biotype: protein_coding
description:
  Similar to many regulatory proteins including: Salmonella typhimurium transcriptional regulatory protein TctD SW:TCTD_SALTY (P22104) (224 aa) fasta scores: E(): 1.8e-36, 50.000% id in 220 aa and Pseudomonas aeruginosa probable two-component response regulator Pa0756 TR:Q9I5H3 (EMBL:AE004510) (223 aa) fasta scores: E(): 2.1e-40, 53.812% id in 223 aa.


ensembl_gene_id: BP2548
symbol: BP2548
gene_biotype: protein_coding
description:
  Similar to several two-component system, histidine kinases e.g. Rhizobium loti Mll7952 TR:Q984L4 (EMBL:AP003013) (452 aa) fasta scores: E(): 1.3e-44, 37.360% id in 447 aa and Salmonella typhi TctE TR:O68289 (EMBL:AF029846) (439 aa) fasta scores: E(): 1.2e-29, 32.576% id in 396 aa.


ensembl_gene_id: BP2549
symbol: BP2549
gene_biotype: protein_coding
description:
  Putative sugar transport protein; Similar to several e.g. Caulobacter crescentus major facilitator family transporter protein Cc0980 TR:Q9A9K0 (EMBL:AE005775) (567 aa) fasta scores: E(): 2.3e-144, 67.956% id in 543 aa.


ensembl_gene_id: BP2550
symbol: BP2550
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase; Similar to Sulfolobus tokodaii 254aa long hypothetical enoyl-CoA hydratase St0048 TR:BAB65003 (EMBL:AP000981) (254 aa) fasta scores: E(): 1e-16, 32.959% id in 267 aa, and to Mycobacterium tuberculosis probable enoyl-CoA hydratase Echa8 or Rv1070c or Mt1100 or Mtv017.23C SW:ECH8_MYCTU (O53418) (257 aa) fasta scores: E(): 1e-16, 28.409% id in 264 aa.


ensembl_gene_id: BP2551
symbol: BP2551
gene_biotype: protein_coding
description:
  Similar to many including: Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa0603 TR:Q9I5T5 (EMBL:AE004496) (369 aa) fasta scores: E(): 1.5e-46, 46.006% id in 363 aa and Escherichia coli O157:H7 EDL933 putative ATP-binding component of a transport system AfuC TR:AAG54709 (EMBL:AE005215) (352 aa) fasta scores: E(): 2.8e-40, 39.589% id in 341 aa.


ensembl_gene_id: BP2552
symbol: BP2552
gene_biotype: protein_coding
description:
  Similar to many e.g. Rhizobium loti ABC transport system permease protein Mll3625 TR:Q98FT7 (EMBL:AP003002) (567 aa) fasta scores: E(): 4e-31, 26.964% id in 560 aa and Streptomyces coelicolor putative membrane protein Sc10a5.29C TR:O54120 (EMBL:AL021529) (589 aa) fasta scores: E(): 1.4e-40, 32.192% id in 584 aa, and to.


ensembl_gene_id: BP2553
symbol: BP2553
gene_biotype: protein_coding
description:
  Putative exported protein; Weakly similar to several e.g. Rhizobium loti ABC transporter, periplasmic substrate-binding protein Mll3626 TR:Q98FT6 (EMBL:AP003002) (328 aa) fasta scores: E(): 3.6e-12, 27.306% id in 271 aa.


ensembl_gene_id: BP2554
symbol: fabG-5
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 3.5e-29, 41.597% id in 238 aa.


ensembl_gene_id: BP2555
symbol: BP2555
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similarover the whole range to proteins of unproven function e.g. Archaeoglobus fulgidus MaoC protein af2313 TR:O27971 (EMBL:AE000944) (151 aa) fasta scores: E(): 1.3e-13, 40.000% id in 130 aa. Similar to the the very C-terminus of Escherichia coli phenylacetic acid degradation protein MaoC SW:MAOC_ECOLI (P77455) (681 aa) fasta scores: E(): 1.6e-08, 35.821% id in 134 aa.


ensembl_gene_id: BP2556
symbol: BP2556
gene_biotype: protein_coding
description:
  Weakly similar to many proteins of undefined function e.g. Thermoplasma acidophilum hypothetical protein Ta1457 ta1457 TR:Q9HI85 (EMBL:AL445067) (135 aa) fasta scores: E(): 0.018, 25.210% id in 119 aa.


ensembl_gene_id: BP2557
symbol: BP2557
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many e.g. Pseudomonas aeruginosa hypothetical protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 2.6e-46, 43.669% id in 387 aa.


ensembl_gene_id: BP2558
symbol: BP2558
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to many e.g. Escherichia coli, and glycine cleavage system transcriptional activator GcvA or B2808 or Z4125 or Ecs3668 SW:GCVA_ECOLI (P32064) (305 aa) fasta scores: E(): 1.3e-22, 30.208% id in 288 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2559
symbol: BP2559
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to many e.g. Escherichia coli hypothetical protein YfdE or B2371 SW:YFDE_ECOLI (P76518) (381 aa) fasta scores: E(): 5.3e-53, 37.333% id in 375 aa; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP2562
symbol: pyrB-2
gene_biotype: protein_coding
description:
  Highly similar to Burkholderia cepacia aspartate transcarbamoylase PyrB TR:Q9F9H3 (EMBL:AF192346) (431 aa) fasta scores: E(): 3.2e-131, 77.136% id in 433 aa; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.


ensembl_gene_id: BP2565
symbol: ecnA2
gene_biotype: protein_coding
description:
  Similar to many including: Escherichia coli anti-toxin entericidin A precursor EcnaA or B4147.1 SW:ECNA_ECOLI (P56548) (41 aa) fasta scores: E(): 0.29, 44.737% id in 38 aa, Rhizobium meliloti putative entericidin b signal peptide protein TR:CAC46557 (EMBL:AL591789) (52 aa) fasta scores: E(): 0.035, 48.837% id in 43 aa and Rickettsia conorii hypothetical 6.7 kDa protein Rc1154 TR:AAL03692 (EMBL:AE008664) (64 aa) fasta scores: E(): 0.004, 38.095% id in 42 aa. Note in E. coli ecnA is located next to the bacteriolytic toxin ecnB. This is not the situation in B. pertusis. However, B. pertus [...]


ensembl_gene_id: BP2566
symbol: BP2566
gene_biotype: protein_coding
description:
  Putative exported endonulease; Similar to many nucleases e.g. Escherichia coli O157:H7 EDL933 DNA-specific endonuclease I EndA TR:AAG58076 (EMBL:AE005525) (235 aa) fasta scores: E(): 2.4e-39, 47.154% id in 246 aa.


ensembl_gene_id: BP2571
symbol: BP2571
gene_biotype: protein_coding
description:
  Putative transcriptional regulatory protein; Similar to in regions to possible DNA-binding domains of several proteins of undefined function e.g. Xylella fastidiosa hypothetical protein Xf0744 xf0744 TR:Q9PFD4 (EMBL:AE003916) (120 aa) fasta scores: E(): 3.5e-22, 66.667% id in 108 aa.


ensembl_gene_id: BP2572
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: BP2573
symbol: pheT
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phenylalanyl-tRNA synthetase beta chain PheT or B1713 SW:SYFB_ECOLI (P07395) (795 aa) fasta scores: E(): 3.9e-126, 45.735% id in 809 aa.


ensembl_gene_id: BP2574
symbol: pheS
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phenylalanyl-tRNA synthetase alpha chain PheS or B1714 SW:SYFA_ECOLI (P08312) (327 aa) fasta scores: E(): 1.5e-51, 56.928% id in 332 aa and to Pseudomonas aeruginosa phenylalanyl-tRNA synthetase, alpha-subunit PheS or Pa2740 TR:Q9I0A3 (EMBL:AE004702) (338 aa) fasta scores: E(): 6e-71, 56.598% id in 341 aa.


ensembl_gene_id: BP2575
symbol: rplT
gene_biotype: protein_coding
description:
  50s ribosomal protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: BP2576
symbol: rpmI
gene_biotype: protein_coding
description:
  Similar to Pseudomonas syringae 50s ribosomal protein l35 RpmI SW:RL35_PSESY (P52830) (64 aa) fasta scores: E(): 1.9e-10, 58.065% id in 62 aa and to Neisseria meningitidis (serogroup A) putative 50s ribosomal protein l35 RpmI or Nma0931 TR:Q9JQN7 (EMBL:AL162754) (65 aa) fasta scores: E(): 1.6e-16, 69.231% id in 65 aa; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: BP2578
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: BP2580
symbol: BP2580
gene_biotype: protein_coding
description:
  Putative GntR-family regulatory protein; Similar to several including: Pseudomonas aeruginosa probable transcriptional regulator Pa2897 TR:Q9HZV0 (EMBL:AE004716) (479 aa) fasta scores: E(): 1e-58, 37.844% id in 473 aa and Escherichia coli O157:H7 putative regulator Ecs5302 TR:BAB38725 (EMBL:AP002569) (470 aa) fasta scores: E(): 2.4e-53, 35.106% id in 470 aa.


ensembl_gene_id: BP2586
symbol: BP2586
gene_biotype: protein_coding
description:
  Integral membrane protein; Similar to several including: Pasteurella multocida hypothetical protein Pm0419 TR:Q9CNK9 (EMBL:AE006078) (345 aa) fasta scores: E(): 1.3e-69, 51.604% id in 343 aa, and to Escherichia coli hypothetical protein YbcI or B0527 SW:YBCI_ECOLI (P45570) (173 aa) fasta scores: E(): 0.0012, 31.579% id in 152 aa.


ensembl_gene_id: BP2589
symbol: BP2589
gene_biotype: protein_coding
description:
  Putative regulatory protein (pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. The 5' end of this CDS is missing following the IS481 insertion. Similar to several regulators e.g. Pseudomonas aeruginosa probable transcriptional regulator Pa5116 TR:Q9HU68 (EMBL:AE004924) (141 aa) fasta scores: E(): 1.8e-14, 62.353% id in 85 aa and Rhizobium loti transcriptional regulator Mll5378 TR:Q98BY3 (EMBL:AP003006) (157 aa) fasta scores: E(): 1.7e-10, 43.434% id in 99 aa.


ensembl_gene_id: BP2590
symbol: BP2590
gene_biotype: protein_coding
description:
  Similar to many putative regulatory proteins e.g. Streptomyces coelicolor putative LacI-family transcriptional regulator Sce65.21C TR:Q9RKF2 (EMBL:AL133236) (349 aa) fasta scores: E(): 7.7e-30, 34.746% id in 354 aa.


ensembl_gene_id: BP2591
symbol: BP2591
gene_biotype: protein_coding
description:
  ABC transport protein, ATP-binding component; Similar to many ABC transport proteins e.g. Mycobacterium tuberculosis CDC1551 peptide ABC transporter, ATP-binding protein, putative Mt3764 TR:AAK48128 (EMBL:AE007174) (548 aa) fasta scores: E(): 5.1e-72, 47.689% id in 541 aa.


ensembl_gene_id: BP2592
symbol: BP2592
gene_biotype: protein_coding
description:
  Similar to several ABC-transporter proteins including: Rhizobium loti ABC transporter permease protein Mlr5418 TR:Q98BU9 (EMBL:AP003006) (303 aa) fasta scores: E(): 1.8e-41, 43.396% id in 265 aa and to Escherichia coli dipeptide transport system permease protein DppC or Ecs4422 SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 4.5e-38, 41.791% id in 268 aa.


ensembl_gene_id: BP2593
symbol: BP2593
gene_biotype: protein_coding
description:
  Similar to several including: Rhizobium sp probable peptide ABC transporter permease protein Y4tP SW:Y4TP_RHISN (Q53191) (313 aa) fasta scores: E(): 8.8e-43, 39.936% id in 313 aa and Agrobacterium radiobacter MoaB protein TR:O50268 (EMBL:AF242881) (313 aa) fasta scores: E(): 1.8e-39, 41.066% id in 319 aa.


ensembl_gene_id: BP2594
symbol: BP2594
gene_biotype: protein_coding
description:
  Similar to several including: Rhizobium loti ABC transporter substrate binding protein Mll7247 TR:Q986Q9 (EMBL:AP003011) (505 aa) fasta scores: E(): 9.2e-37, 29.741% id in 501 aa and Escherichia coli putative ABC transporter periplasmic binding protein YddS precursor B1487 SW:YDDS_ECOLI (P76128) (516 aa) fasta scores: E(): 1.8e-29, 28.516% id in 512 aa.


ensembl_gene_id: BP2597
symbol: BP2597
gene_biotype: protein_coding
description:
  Putative membrane transport protein; Similar to several proteins of undefined function e.g. Rhizobium loti Mlr6177 protein TR:Q98A30 (EMBL:AP003008) (216 aa) fasta scores: E(): 7.8e-32, 52.427% id in 206 aa.


ensembl_gene_id: BP2598
symbol: BP2598
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several including: Pseudomonas aeruginosa hypothetical protein Pa4182 TR:Q9HWJ9 (EMBL:AE004834) (212 aa) fasta scores: E(): 8.9e-50, 61.576% id in 203 aa and Rhizobium loti transcriptional regulator mll0013 TR:Q98NS0 (EMBL:AP002994) (216 aa) fasta scores: E(): 7.7e-32, 42.512% id in 207 aa.


ensembl_gene_id: BP2599
symbol: BP2599
gene_biotype: protein_coding
description:
  Similar to several putative e.g. regulators Rhizobium loti transcriptional regulator Mlr6174 TR:Q98A34 (EMBL:AP003008) (489 aa) fasta scores: E(): 2.2e-79, 52.218% id in 496 aa and Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SW:MOCR_RHIME (P49309) (493 aa) fasta scores: E(): 5.7e-46, 37.657% id in 478 aa.


ensembl_gene_id: BP2600
symbol: BP2600
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to several including: Rhizobium loti Mlr8412 protein TR:Q983A8 (EMBL:AP003014) (405 aa) fasta scores: E(): 2.7e-60, 47.594% id in 374 aa and Rhizobium meliloti putative transport transmembrane protein Smc01779 TR:CAC45796 (EMBL:AL591786) (408 aa) fasta scores: E(): 1.7e-50, 39.216% id in 408 aa. Also similar to BP0980, 49.746% identity in 394 aa overlap.


ensembl_gene_id: BP2601
symbol: BP2601
gene_biotype: protein_coding
description:
  Similar to Bacillus stearothermophilus alcohol dehydrogenase SW:ADH3_BACST (P42328) (339 aa) fasta scores: E(): 2.9e-34, 37.615% id in 327 aa.


ensembl_gene_id: BP2602
symbol: BP2602
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to Rhizobium loti Mll3668 hypothetical protein TR:Q98FQ2 (EMBL:AP003002) (436 aa) fasta scores: E(): 1.8e-10, 30.820% id in 451 aa.


ensembl_gene_id: BP2604
symbol: BP2604
gene_biotype: protein_coding
description:
  Putative LysR-family transcriptional regulatory protein; Similar to several proposed regulatory proteins Rhizobium loti glycine cleavage system transcription activator Mlr1973 TR:Q98JE9 (EMBL:AP002998) (303 aa) fasta scores: E(): 2.8e-37, 42.857% id in 280 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2605
symbol: BP2605
gene_biotype: protein_coding
description:
  Similar to several proposed regulatory proteins including: Pseudomonas aeruginosa probable transcriptional regulator Pa3782 TR:Q9HXL3 (EMBL:AE004797) (317 aa) fasta scores: E(): 2.8e-63, 53.968% id in 315 aa and Streptomyces coelicolor Arac-family transcriptional regulator AdpA TR:Q9L062 (EMBL:AL163641) (398 aa) fasta scores: E(): 4.4e-54, 47.097% id in 310 aa.


ensembl_gene_id: BP2606
symbol: BP2606
gene_biotype: protein_coding
description:
  Putative exported protein; Similar in parts to several e.g. Escherichia coli O157:H7 hypothetical 29.1 kDa protein Ecs0400 TR:BAB33823 (EMBL:AP002551) (262 aa) fasta scores: E(): 4.7e-49, 51.331% id in 263 aa.


ensembl_gene_id: BP2607
symbol: BP2607
gene_biotype: protein_coding
description:
  Similar to several membrane proteins including: Campylobacter jejuni putative integral membrane protein Cj0557C TR:Q9PHV8 (EMBL:AL139075) (361 aa) fasta scores: E(): 1.9e-09, 23.193% id in 332 aa and Streptomyces coelicolor putative integral membrane protein Scg4.15C TR:Q9K3P9 (EMBL:AL360034) (577 aa) fasta scores: E(): 1.1e-07, 35.938% id in 192 aa.


ensembl_gene_id: BP2609
symbol: BP2609
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa3614 pa3614 TR:Q9HY12 (EMBL:AE004781) (467 aa) fasta scores: E(): 2.7e-43, 40.870% id in 460 aa.


ensembl_gene_id: BP2610
symbol: BP2610
gene_biotype: protein_coding
description:
  Putative solute transport protein; Similar to many proposed s including : Pseudomonas aeruginosa Pa1647 TR:Q9I378 (EMBL:AE004592) (573 aa) fasta scores: E(): 1.2e-71, 40.146% id in 548 aa and Mycobacterium tuberculosis CDC1551 Mt1781 TR:AAK46054 (EMBL:AE007038) (560 aa) fasta scores: E(): 4.2e-69, 37.613% id in 553 aa.


ensembl_gene_id: BP2612
symbol: BP2612
gene_biotype: protein_coding
description:
  Probable transcriptional regulator (pseudogene); Large insertion in pertussis, relative to parapertussis and bronchiseptica, downstream of this position.


ensembl_gene_id: BP2613
symbol: BP2613
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several e.g. Rhizobium loti Mll1737 protein Mll1737 TR:Q98JX4 (EMBL:AP002998) (416 aa) fasta scores: E(): 3.9e-32, 29.496% id in 417 aa.


ensembl_gene_id: BP2614
symbol: BP2614
gene_biotype: protein_coding
description:
  ABC transport protein, inner membrane component; Similar to many ABC transport proteins including: Streptomyces coelicolor putative ABC-transport protein, membrane component Sc8g12.20 TR:Q9KYY5 (EMBL:AL355753) (267 aa) fasta scores: E(): 2.4e-26, 34.426% id in 244 aa and Rhizobium loti taurine transport system permease protein Mlr4519 TR:Q98DW5 (EMBL:AP003004) (286 aa) fasta scores: E(): 1.6e-25, 33.955% id in 268 aa.


ensembl_gene_id: BP2615
symbol: BP2615
gene_biotype: protein_coding
description:
  ABC transport protein, ATP-binding component; Similar to many ABC transport proteins including: Clostridium acetobutylicum ABC-type sulfate transporter, ATPase component cac0107 TR:Q97MT4 (EMBL:AE007523) (279 aa) fasta scores: E(): 1.3e-35, 47.598% id in 229 aa.


ensembl_gene_id: BP2616
symbol: BP2616
gene_biotype: protein_coding
description:
  Similar to many ABC transport proteins e.g. Escherichia coli taurine-binding periplasmic protein precursor taua or ssia or b0365 SW:TAUA_ECOLI (Q47537) (320 aa) fasta scores: E(): 4e-10, 25.081% id in 307 aa.


ensembl_gene_id: BP2617
symbol: BP2617
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many proteins of undefined function e.g. Deinococcus radiodurans conserved hypothetical protein Dr2540 TR:Q9RRF2 (EMBL:AE002083) (496 aa) fasta scores: E(): 4.2e-25, 32.037% id in 437 aa.


ensembl_gene_id: BP2618
symbol: BP2618
gene_biotype: protein_coding
description:
  Similar to many IclR-family transcriptional regulators including: Agrobacterium radiobacter putative transcriptional regulator TR:Q9F7C7 (EMBL:AF282677) (260 aa) fasta scores: E(): 3.8e-18, 34.568% id in 243 aa, Streptomyces coelicolor putative transcriptional regulator Scc24.11C TR:Q9L0A6 (EMBL:AL163003) (257 aa) fasta scores: E(): 1.8e-17, 33.745% id in 243 aa and Bacillus halodurans transcriptional regulator Bh2137 TR:Q9KAZ9 (EMBL:AP001514) (251 aa) fasta scores: E(): 2.4e-17, 31.687% id in 243 aa.


ensembl_gene_id: BP2620
symbol: BP2620
gene_biotype: protein_coding
description:
  Putative C4-dicarboxylate transporter (pseudogene); (G)2 in pertussis; (G)3 in parapertussis and bronchiseptica.


ensembl_gene_id: BP2621
symbol: BP2621
gene_biotype: protein_coding
description:
  Similar to many proposed TetR-family transcriptional regulators including: Streptomyces coelicolor Sck13.32 TR:Q9AD73 (EMBL:AL512667) (200 aa) fasta scores: E(): 8.9e-17, 37.838% id in 185 aa, and to Rhizobium meliloti Smc04134 TR:CAC41505 (EMBL:AL591782) (225 aa) fasta scores: E(): 0.0011, 27.273% id in 165 aa.


ensembl_gene_id: BP2622
symbol: hipA
gene_biotype: protein_coding
description:
  HipA-like protein; Similar to Escherichia coli protein HipA or b1507 SWALL:HIPA_ECOLI (SWALL:P23874) (440 aa) fasta scores: E(): 2.8e-54, 41.92% id in 427 aa, and to Ralstonia solanacearum putative hipa transcription regulator protein hipa or rsc1446 or rs03861 SWALL:Q8XZF5 (EMBL:AL646064) (445 aa) fasta scores: E(): 7.9e-82, 51.03% id in 437 aa.


ensembl_gene_id: BP2623
symbol: hipB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli protein HipB or b1508 SWALL:HIPB_ECOLI (SWALL:P23873) (88 aa) fasta scores: E(): 0.22, 27.38% id in 84 aa, and to Ralstonia solanacearum putative transcription regulator protein rsc1447 or rs03860 SWALL:Q8XZF4 (EMBL:AL646064) (84 aa) fasta scores: E(): 1.7e-05, 41.97% id in 81 aa.


ensembl_gene_id: BP2625
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: BP2626
symbol: BP2626
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Pseudomonas aeruginosa hypothetical protein Pa3765 pa3765 TR:Q9HXN0 (EMBL:AE004795) (194 aa) fasta scores: E(): 8.6e-32, 55.026% id in 189 aa.


ensembl_gene_id: BP2630
symbol: BP2630
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); (GC)3 in pertussis; (GC)4 in parapertussis and bronchiseptica.


ensembl_gene_id: BP2632
symbol: BP2632
gene_biotype: protein_coding
description:
  Pseudogene. This CDS is the C-terminal region of BP1690 (disrupted by the insertion of IS481 element).


ensembl_gene_id: BP2633
symbol: BP2633
gene_biotype: protein_coding
description:
  Possible exonuclease; Weakly similar to many hypothetical proteins and to several exonucleases including: Mycobacterium leprae hypothetical protein Ml1119 TR:Q9CC84 (EMBL:AL583920) (383 aa) fasta scores: E(): 2.7e-16, 31.49% id in 381 aa, and to Escherichia coli, and exonuclease SbcD or B0398 or Z0496 or Ecs0448 SW:SBCD_ECOLI (P13457) (400 aa) fasta scores: E(): 0.12, 28.13% id in 295 aa.


ensembl_gene_id: BP2635
symbol: lrp-2
gene_biotype: protein_coding
description:
  D-amino acid dehydrogenase small subunit (pseudogene); (GC)4 in pertussis; (GC)5 in parapertussis and bronchiseptica.


ensembl_gene_id: BP2636
symbol: BP2636
gene_biotype: protein_coding
description:
  Putative exported protein; Weakly similar to many proteins of unknown function including: Neisseria meningitidis hypothetical protein Nmb0465 TR:Q9K0U6 (EMBL:AE002403) (233 aa) fasta scores: E(): 9.3e-06, 28.79% id in 191 aa and Rhizobium loti Mll0832 protein TR:Q98LX6 (EMBL:AP002995) (250 aa) fasta scores: E(): 0.00035, 25% id in 244 aa.


ensembl_gene_id: BP2638
symbol: BP2638
gene_biotype: protein_coding
description:
  Putative exported protein; Highly similar to several Agrobacterium tumefaciens Agr_l_1912p agr_l_1912 TR:AAK89528 (EMBL:AE008295) (573 aa) fasta scores: E(): 9.6e-149, 63.73% id in 579 aa and to Rhizobium loti ABC transporter, periplasmic substrate-binding protein Mll5302 TR:Q98C44 (EMBL:AP003006) (443 aa) fasta scores: E(): 6.2e-08, 25.73% id in 443 aa.


ensembl_gene_id: BP2639
symbol: BP2639
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to Rhizobium loti hypothetical protein Msl0703 protein TR:Q98M71 (EMBL:AP002995) (97 aa) fasta scores: E(): 6.2e-10, 50% id in 78 aa.


ensembl_gene_id: BP2640
symbol: BP2640
gene_biotype: protein_coding
description:
  Putative ABC transport protein, inner membrane component; Similar to many putative ABC transport proteins e.g. Rhizobium meliloti putative transport system permease ABC transporter protein Smc02516 TR:CAC47598 (EMBL:AL591792) (274 aa) fasta scores: E(): 1.2e-79, 73.4% id in 267 aa.


ensembl_gene_id: BP2642
symbol: BP2642
gene_biotype: protein_coding
description:
  Putative ABC transport protein, inner membrane component (pseudogene); (C)3 in pertussis; (C)2 in parapertussis and bronchiseptica; Belongs to the ABC transporter superfamily.


ensembl_gene_id: BP2643
symbol: glpR
gene_biotype: protein_coding
description:
  Probable ATP-binding ABC transporter protein (pseudogene); ScanRegExp hit to PS00017, ATP/GTP-binding site motif A (P-loop).


ensembl_gene_id: BP2644
symbol: BP2644
gene_biotype: protein_coding
description:
  Similar to several Prokaryotic and Eukaryotic glycerol-3-phosphate dehydrogenases including: Deinococcus radiodurans glycerol-3-phosphate dehydrogenase Dr1019 TR:Q9RVK8 (EMBL:AE001953) (522 aa) fasta scores: E(): 6.5e-102, 55.51% id in 535 aa and to Caenorhabditis elegans probable glycerol-3-phosphate dehydrogenase, mitochondrial precursor T25g3.4 SW:GPDM_CAEEL (P90795) (722 aa) fasta scores: E(): 2e-58, 41.31% id in 547 aa.


ensembl_gene_id: BP2645
symbol: BP2645
gene_biotype: protein_coding
description:
  Similar to many IclR-family regulatory proteins including: Pectobacterium carotovorum subsp. carotovorum global regulatory protein, KdgR TR:Q9RB25 (EMBL:AF135395) (263 aa) fasta scores: E(): 2.6e-20, 33.6% id in 247 aa and Bacillus halodurans transcriptional regulator Bh2137 TR:Q9KAZ9 (EMBL:AP001514) (251 aa) fasta scores: E(): 7.6e-21, 29.04% id in 241 aa.


ensembl_gene_id: BP2648
symbol: BP2648
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several including: Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor SW:FRDA_SHEFR (Q02469) (596 aa) fasta scores: E(): 1.1e-21, 30.71% id in 459 aa and Salmonella typhi hypothetical protein R0146 TR:Q9L5J6 (EMBL:AF250878) (467 aa) fasta scores: E(): 8.5e-17, 28.86% id in 485 aa.


ensembl_gene_id: BP2649
symbol: BP2649
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several e.g. Mycobacterium tuberculosis CDC1551 conserved hypothetical protein mt3614 TR:AAK47972 (EMBL:AE007164) (278 aa) fasta scores: E(): 4e-17, 29.31% id in 290 aa.


ensembl_gene_id: BP2651
symbol: BP2651
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); 11 bp deletion in pertussis relative to parapertussis and bronchiseptica.


ensembl_gene_id: BP2653
symbol: BP2653
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to many including: Burkholderia cepacia hypothetical 35.5 kDa protein TR:AAK81675 (EMBL:AF029344) (337 aa) fasta scores: E(): 3.1e-43, 42.63% id in 319 aa and Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.2e-43, 42.05% id in 321 aa.


ensembl_gene_id: BP2654
symbol: BP2654
gene_biotype: protein_coding
description:
  Similar to many e.g. Neisseria meningitidis dihydrodipicolinate synthase DapA or Nmb0929 SW:DAPA_NEIMB (Q9JZR4) (291 aa) fasta scores: E(): 3.8e-17, 27.57% id in 301 aa; Belongs to the DapA family.


ensembl_gene_id: BP2655
symbol: BP2655
gene_biotype: protein_coding
description:
  Similar to several putative IclR-family regulatory proteins e.g. Rhizobium loti transcription regulator Mll9009 TR:Q982L6 (EMBL:AP003015) (269 aa) fasta scores: E(): 3.2e-26, 37.55% id in 245 aa.


ensembl_gene_id: BP2656
symbol: BP2656
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0540 pa0540 TR:Q9I5Z6 (EMBL:AE004490) (128 aa) fasta scores: E(): 2.6e-12, 43.3% id in 127 aa and Neisseria meningitidis putative membrane protein nma1176 TR:Q9JUR4 (EMBL:AL162755) (127 aa) fasta scores: E(): 3.7e-11, 42.5% id in 120 aa.


ensembl_gene_id: BP2657
symbol: BP2657
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pasteurella multocida hypothetical protein Pm1879 TR:Q9CJW2 (EMBL:AE006225) (205 aa) fasta scores: E(): 1.4e-20, 40.51% id in 195 aa and Escherichia coli hypothetical 23.4 kDa protein in melb-fumb intergenic region YjdF or B4121 SW:YJDF_ECOLI (P39270) (209 aa) fasta scores: E(): 7.7e-18, 40.75% id in 211 aa.


ensembl_gene_id: BP2658
symbol: BP2658
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa0868 pa0868 TR:Q9I573 (EMBL:AE004521) (137 aa) fasta scores: E(): 3.6e-25, 56.29% id in 135 aa. Also similar to a region in many peptide chain release factors e.g. Mycobacterium leprae peptide chain release factor 1 PrfA or Ml1134 SW:RF1_MYCLE (P45833) (361 aa) fasta scores: E(): 1.9, 29.91% id in 117 aa.


ensembl_gene_id: BP2659
symbol: queE
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: BP2660
symbol: BP2660
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nma0704 nma0704 TR:Q9JVT6 (EMBL:AL162754) (140 aa) fasta scores: E(): 6.6e-14, 36.8% id in 144 aa. Also similar to several proposed tetrahydrobiopterin synthases e.g. Neisseria meningitidis 6-pyruvoyl tetrahydrobiopterin synthase, putative nmb0527 TR:Q9K0Q7 (EMBL:AE002408) (140 aa) fasta scores: E(): 4.8e-14, 36.8% id in 144 aa.


ensembl_gene_id: BP2662
symbol: BP2662
gene_biotype: protein_coding
description:
  Similar to several aldolases e.g.Pseudomonas aeruginosa probable aldolase Pa0224 TR:Q9I6R4 (EMBL:AE004460) (260 aa) fasta scores: E(): 3.9e-55, 53.57% id in 252 aa and Haemophilus influenzae L-fuculose phosphate aldolase FucA or Hi0611 SW:FUCA_HAEIN (P44777) (216 aa) fasta scores: E(): 3e-08, 26.7% id in 176 aa.


ensembl_gene_id: BP2663
symbol: BP2663
gene_biotype: protein_coding
description:
  Weakly similar to several e.g. Rhizobium loti putative transcriptional regulator Mll2952 TR:Q98HA7 (EMBL:AP003000) (219 aa) fasta scores: E(): 1.4e-07, 28.2% id in 195 aa.


ensembl_gene_id: BP2664
symbol: BP2664
gene_biotype: protein_coding
description:
  Similar to several MarR-family regulatory proteins e.g. Escherichia coli transcriptional regulator SlyA SW:SLYA_ECOLI (P55740) (146 aa) fasta scores: E(): 1.3e-07, 34.35% id in 131 aa and to Serratia sp. ATCC39006 global regulator of antibiotic and pigment production, Rap TR:Q9RA96 (EMBL:AF168597) (145 aa) fasta scores: E(): 1.5e-07, 33.08% id in 136 aa.


ensembl_gene_id: BP2667
symbol: fhaS
gene_biotype: protein_coding
description:
  Adhesin; Highly similar to Bordetella pertussis filamentous hemagglutinin FhaB or BP1879 SW:FHAB_BORPE (P12255) (3591 aa) fasta scores: E(): 6.4e-175, 48.23% id in 2606 aa, and to Bordetella bronchiseptica adhesin FhaB TR:Q9JP78 (EMBL:AF111796) (3634 aa) fasta scores: E(): 2.7e-173, 46.99% id in 2679 aa. The product of this CDS is also similar to B. pertussis BP2907 E(): 9.8e-120 37.940% identity in 2670 aa.


ensembl_gene_id: BP2668
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: BP2669
symbol: BP2669
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar in parts to several e.g. Escherichia coli hypothetical protein YiaM B3577 SW:YIAM_ECOLI (P37674) (157 aa) fasta scores: E(): 3.5e-07, 34.05% id in 138 aa.


ensembl_gene_id: BP2670
symbol: BP2670
gene_biotype: protein_coding
description:
  Putative membrane permease; Similar to many including: Rhizobium meliloti putative c4-dicarboxylate transport system, permease Smb21436 TR:CAC49665 (EMBL:AL603646) (426 aa) fasta scores: E(): 6.6e-47, 37.76% id in 421 aa and Rhizobium meliloti conserved hypothetical DedA-like protein Sma0250 TR:AAK64791 (EMBL:AE007207) (425 aa) fasta scores: E(): 7.6e-45, 38.39% id in 435 aa.


ensembl_gene_id: BP2671
symbol: BP2671
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti putative periplasmic binding protein Smc00271 TR:CAC46278 (EMBL:AL591788) (325 aa) fasta scores: E(): 1.2e-29, 34.74% id in 331 aa.


ensembl_gene_id: BP2674
symbol: fimX
gene_biotype: protein_coding
description:
  Fimbrial protein; Bordetella pertussis is the causative agent of whooping cough. An essential step in the disease process is the attachment of the bacteria to the ciliated epithelium of the respiratory tract, enabling the organism to resist normal host-clearance mechanisms. It is unclear which bacterial cell surface component are responsible for adherence but the fimbriae of B.pertussis are prime candidates for being involved in this process; Belongs to the fimbrial protein family.


ensembl_gene_id: BP2675
symbol: paaK
gene_biotype: protein_coding
description:
  Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: BP2676
symbol: paaI
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phenylacetic acid degradation protein PaaI B1396 SW:PAAI_ECOLI (P76084) (140 aa) fasta scores: E(): 4.5e-25, 51.56% id in 128 aa.


ensembl_gene_id: BP2677
symbol: paaG-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli probable enoyl-CoA hydratase PaaG B1394 SW:PAAG_ECOLI (P77467) (262 aa) fasta scores: E(): 1.3e-55, 60.07% id in 258 aa.


ensembl_gene_id: BP2678
symbol: BP2678
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative dehydrogenase Sch69.05 TR:Q9XA29 (EMBL:AL079308) (563 aa) fasta scores: E(): 4.9e-114, 56.81% id in 558 aa and to Azoarcus evansii PaaZ TR:Q9F9V2 (EMBL:AF176259) (562 aa) fasta scores: E(): 6.2e-112, 56.44% id in 551 aa.


ensembl_gene_id: BP2681
symbol: paaD
gene_biotype: protein_coding
description:
  Probable phenylacetic acid degradation NADH oxidoreductase (pseudogene); HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain.


ensembl_gene_id: BP2682
symbol: paaC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phenylacetic acid degradation protein PaaC or B1390 SW:PAAC_ECOLI (P76079) (248 aa) fasta scores: E(): 1.4e-49, 54.58% id in 251 aa.


ensembl_gene_id: BP2683
symbol: paaB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phenylacetic acid degradation protein PaaB or B1389 SW:PAAB_ECOLI (P76078) (95 aa) fasta scores: E(): 1.1e-23, 63.33% id in 90 aa.


ensembl_gene_id: BP2684
symbol: paaA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phenylacetic acid degradation protein PaaA or B1388 SW:PAAA_ECOLI (P76077) (309 aa) fasta scores: E(): 7.9e-93, 70.03% id in 307 aa. However more similar in length to Rhizobium meliloti putative phenylacetic acid degradation protein TR:CAC49959 (EMBL:AL603647) (332 aa) fasta scores: E(): 2.8e-106, 74.84% id in 326 aa.


ensembl_gene_id: BP2685
symbol: paaX
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phenylacetic acid degradation operon negative regulatory protein paaX or B1399 SW:PAAX_ECOLI (P76086) (316 aa) fasta scores: E(): 1.3e-34, 35.94% id in 306 aa.


ensembl_gene_id: BP2686
symbol: nnrE
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.


ensembl_gene_id: BP2687
symbol: orn
gene_biotype: protein_coding
description:
  Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: BP2688
symbol: BP2688
gene_biotype: protein_coding
description:
  Similar to many putative metalloproteases e.g. Campylobacter jejuni putative integral membrane zinc-metalloprotease Cj0723C TR:Q9PPI4 (EMBL:AL139076) (395 aa) fasta scores: E(): 1.4e-38, 33.07% id in 393 aa.


ensembl_gene_id: BP2689
symbol: rsgA
gene_biotype: protein_coding
description:
  Putative ATP/GTP-binding protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: BP2691
symbol: BP2691
gene_biotype: protein_coding
description:
  Probable ABC-transport protein, inner membrane component (pseudogene); Signal peptide predicted for BP2690 by SignalP 2.0 HMM (Signal peptide probabilty 0.988) with cleavage site probability 0.825 between residues 43 and 44.


ensembl_gene_id: BP2692
symbol: BP2692
gene_biotype: protein_coding
description:
  ABC-transport protein, solute-binding component; Similar to many membrane transport proteins including: Agrobacterium tumefaciens Agr_l_325p agr_l_325 TR:AAK88731 (EMBL:AE008214) (502 aa) fasta scores: E(): 6.6e-100, 51.78% id in 504 aa, and to Bacillus halodurans oligopeptide ABC transpoter Bh3026 TR:Q9K8I0 (EMBL:AP001517) (525 aa) fasta scores: E(): 1.6e-32, 30.48% id in 492 aa.


ensembl_gene_id: BP2693
symbol: BP2693
gene_biotype: protein_coding
description:
  Similar to many putative gamma-glutamyltranspeptidases e.g. Mycobacterium tuberculosis putative gamma-glutamyltranspeptidase Rv0773c TR:P71828 (EMBL:Z80226) (512 aa) fasta scores: E(): 1.5e-90, 56.76% id in 525 aa. Also similar to Pseudomonas sp acylase acy 1 [includes: cephalosporin acylase SW:PAC1_PSES3 () (557 aa) fasta scores: E(): 1.1e-45, 31.81% id in 550 aa.


ensembl_gene_id: BP2694
symbol: BP2694
gene_biotype: protein_coding
description:
  Similar to many putative transcriptional regulators e.g. Pseudomonas aeruginosa probable transcriptional regulator Pa0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores: E(): 1.8e-20, 33.88% id in 304 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2698
symbol: BP2698
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearumputative heat shock protein 15 HslR or Rsc2642 or Rs04574 SWALL:Q8XW33 (EMBL:AL646071) (131 aa) fasta scores: E():3.8e-17, 53.33% id in 120 aa overlap.


ensembl_gene_id: BP2699
symbol: glnB
gene_biotype: protein_coding
description:
  Similar to many nitrogen regulatory proteins e.g. Rhodobacter sphaeroides P-II SW:GLNB_RHOSH () (112 aa) fasta scores: E(): 8.4e-31, 76.78% id in 112 aa; Belongs to the P(II) protein family.


ensembl_gene_id: BP2700
symbol: nadE
gene_biotype: protein_coding
description:
  Putative NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: BP2701
symbol: BP2701
gene_biotype: protein_coding
description:
  Putative membrane transport protein; Similar to many proteins of undefined function e.g. Escherichia coli hypothetical protein YbdG SW:YBDG_ECOLI (P39455) (415 aa) fasta scores: E(): 3.3e-60, 42.23% id in 393 aa.


ensembl_gene_id: BP2702
symbol: argH-2
gene_biotype: protein_coding
description:
  Argininosuccinate lyase; Similar to many e.g. Pseudomonas aeruginosa argininosuccinate lyase ArgH or Pa5263 SW:ARLY_PSEAE (P50987) (464 aa) fasta scores: E(): 8.1e-115, 66.81% id in 449 aa.


ensembl_gene_id: BP2703
symbol: BP2703
gene_biotype: protein_coding
description:
  Similar to many proteins of undefined function e.g. Pseudomonas aeruginosa hypothetical protein Pa3208 TR:Q9HZ32 (EMBL:AE004744) (186 aa) fasta scores: E(): 9.6e-18, 38.83% id in 188 aa.


ensembl_gene_id: BP2705
symbol: BP2705
gene_biotype: protein_coding
description:
  Putative molybdenum-binding protein; Similar to several including : Clostridium acetobutylicum molybdate-binding protein Cac0252 TR:Q97ME6 (EMBL:AE007538) (319 aa) fasta scores: E(): 1.6e-14, 34.68% id in 173 aa and Alcaligenes eutrophus formate dehydrogenase FdsR TR:Q9RBF7 (EMBL:AJ007718) (299 aa) fasta scores: E(): 5.4e-48, 50.17% id in 293 aa.


ensembl_gene_id: BP2706
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: BP2707
symbol: moeA-2
gene_biotype: protein_coding
description:
  Molybdopterin cofactor biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: BP2708
symbol: moaB
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: BP2709
symbol: moaE
gene_biotype: protein_coding
description:
  Similar to Haemophilus influenzae molybdopterin converting factor, subunit 2 MoaE or Hi1673 SW:MOAE_HAEIN (P45308) (150 aa) fasta scores: E(): 1.9e-23, 44.37% id in 151 aa.


ensembl_gene_id: BP2710
symbol: moaD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli molybdopterin converting factor, subunit 1 MoaD or Chla4 or ChlM or B0784 SW:MOAD_ECOLI (P30748) (81 aa) fasta scores: E(): 4.9e-05, 46.34% id in 82 aa.


ensembl_gene_id: BP2711
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: BP2712
symbol: BP2712
gene_biotype: protein_coding
description:
  Putative exported protein; Similar over entire range to Pseudomonas aeruginosa hypothetical protein Pa4735 TR:Q9HV64 (EMBL:AE004887) (1088 aa) fasta scores: E(): 2.2e-37, 28.25% id in 1161 aa.


ensembl_gene_id: BP2713
symbol: BP2713
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to Methylobacterium extorquens putative carboxymethylenebutenolidase SW:DLHH_METEX (P71505) (291 aa) fasta scores: E(): 4.8e-59, 56.8% id in 294 aa. Also similar to BP1256, 55.253% identity (55.469% ungapped) in 257 aa overlap.


ensembl_gene_id: BP2715
symbol: BP2715
gene_biotype: protein_coding
description:
  AhpC/TSA-family protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.


ensembl_gene_id: BP2716
symbol: BP2716
gene_biotype: protein_coding
description:
  Similar to many membrane transport proteins e.g. Pseudomonas aeruginosa probable MFS transporter Pa4887 TR:Q9HUS6 (EMBL:AE004901) (438 aa) fasta scores: E(): 1.2e-78, 54.5% id in 455 aa.


ensembl_gene_id: BP2717
symbol: BP2717
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to many proteins of undefined function e.g. Neisseria meningitidis hypothetical protein Nmb1028 TR:Q9JZJ2 (EMBL:AE002453) (291 aa) fasta scores: E(): 3.1e-51, 52.26% id in 287 aa.


ensembl_gene_id: BP2718
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: BP2719
symbol: BP2719
gene_biotype: protein_coding
description:
  Putative exported protein; No significant database hits. Similar to BP0266, BP1766, BP3099, BP3683, and BP3731.


ensembl_gene_id: BP2720
symbol: BP2720
gene_biotype: protein_coding
description:
  Similar to many proposed regulators e.g. Rhizobium loti transcriptional regulator Mlr4666 TR:Q98DK2 (EMBL:AP003004) (195 aa) fasta scores: E(): 2.7e-15, 34.09% id in 176 aa.


ensembl_gene_id: BP2722
symbol: BP2722
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida Cadmium-Transporting ATPase CadA TR:AAK48831 (EMBL:AF333961) (737 aa) fasta scores: E(): 6.3e-147, 62% id in 737 aa and to Pseudomonas aeruginosa probable metal-transporting P-type ATPase pa3690 TR:Q9HXV0 (EMBL:AE004788) (740 aa) fasta scores: E(): 5.2e-141, 60.85% id in 746 aa.


ensembl_gene_id: BP2723
symbol: BP2723
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida MerR-family response regulator CadR TR:AAK48830 (EMBL:AF333961) (147 aa) fasta scores: E(): 8e-24, 51.72% id in 145 aa, and to Haemophilus influenzae Zn ZntR or Hi1623 SW:ZNTR_HAEIN (P45277) (135 aa) fasta scores: E(): 4.6e-17, 46.61% id in 118 aa.


ensembl_gene_id: BP2725
symbol: BP2725
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Caulobacter crescentus formiminoglutamase Cc0958 TR:Q9A9M0 (EMBL:AE005772) (271 aa) fasta scores: E(): 8e-43, 45.72% id in 269 aa and to Pseudomonas aeruginosa N-formylglutamate amidohydrolase HutG or Pa5091 TR:Q9HU92 (EMBL:AE004922) (266 aa) fasta scores: E(): 7.3e-41, 45.86% id in 266 aa.


ensembl_gene_id: BP2726
symbol: BP2726
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to many inculding several proposed Prokaryotic and Eukaryotic acyl carrier proteins: Rhizobium loti 3-oxoacyl-acyl carrier protein reductase Mll1830 TR:Q98JQ5 (EMBL:AP002998) (234 aa) fasta scores: E(): 6.3e-55, 64.53% id in 234 aa and Cuphea lanceolata 3-oxoacyl-[acyl-carrier protein] reductase, chloroplast precursor Clkr27 SW:FABG_CUPLA (P28643) (320 aa) fasta scores: E(): 1.1e-17, 32.52% id in 246 aa 72.22% id in 234 aa.


ensembl_gene_id: BP2727
symbol: BP2727
gene_biotype: protein_coding
description:
  Similar to many SurF1-family proteins including: Caulobacter crescentus Cc1769 TR:Q9A7F4 (EMBL:AE005851) (225 aa) fasta scores: E(): 9.8e-41, 57.01% id in 228 aa and Rhizobium meliloti Smb21490 TR:CAC49719 (EMBL:AL603646) (251 aa) fasta scores: E(): 4.2e-23, 46.36% id in 179 aa.


ensembl_gene_id: BP2728
symbol: BP2728
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cytochrome O ubiquinol oxidase protein CyoD or B0429 or Z0532 or Ecs0483 SW:CYOD_ECOLI (P18403) (109 aa) fasta scores: E(): 1.7e-18, 54.71% id in 106 aa and to Rhizobium loti cytochrome O ubiquinol oxidase subunit IV Mlr6849 TR:Q987Y8 (EMBL:AP003010) (125 aa) fasta scores: E(): 1.4e-28, 63.41% id in 123 aa.


ensembl_gene_id: BP2729
symbol: BP2729
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cytochrome O ubiquinol oxidase subunit III CyoC or B0430 SW:CYOC_ECOLI (P18402) (204 aa) fasta scores: E(): 1.4e-45, 59.89% id in 187 aa and Rhizobium meliloti putative cytochrome O ubiquinol oxidase chain III protein TR:CAC49717 (EMBL:AL603646) (210 aa) fasta scores: E(): 9.6e-60, 69.48% id in 213 aa. Also similar to BP2931, 57.310% identity in 171 aa overlap.


ensembl_gene_id: BP2730
symbol: BP2730
gene_biotype: protein_coding
description:
  Similar to Escherichia coli ubiquinol oxidase polypeptide I CyoB or B0431 or Z0534 or Ecs0485 SW:CYOB_ECOLI (P18401) (663 aa) fasta scores: E(): 1e-175, 65.74% id in 648 aa. Also similar to BP2932 (65.284% identity in 651 aa overlap), and to BP3743 (42.636% identity in 516 aa overlap); Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: BP2732
symbol: BP2732
gene_biotype: protein_coding
description:
  Putative ubiquinol oxidase subunit II (pseudogene); Signal peptide predicted for BP2731 by SignalP 2.0 HMM (Signal peptide probabilty 0.908) with cleavage site probability 0.462 between residues 27 and 28.


ensembl_gene_id: BP2734
symbol: BP2734
gene_biotype: protein_coding
description:
  Putative chelatase (Pseudogene); Pseudogene. This CDS appears to have a frameshift mutation following codon 274. The frameshift occurs within a polymeric tract of (C)5. The sequence has been checked and believed to be correct. Similar to many including: Neisseria meningitidis putative chelatase Nma2080 TR:Q9JSY3 (EMBL:AL162758) (498 aa) fasta scores: E(): 2.2e-82, 55.66% id in 503 aa and to Xylella fastidiosa competence related protein Xf1179 TR:Q9PE49 (EMBL:AE003951) (506 aa) fasta scores: E(): 6.9e-76, 52.57% id in 504 aa.


ensembl_gene_id: BP2735
symbol: BP2735
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several e.g. Neisseria meningitidis hypothetical protein Nmb0404 TR:Q9K0Z7 (EMBL:AE002396) (106 aa) fasta scores: E(): 3.7e-09, 44.31% id in 88 aa.


ensembl_gene_id: BP2736
symbol: BP2736
gene_biotype: protein_coding
description:
  Similar to many e.g. Escherichia coli nitrogen regulatory protein P-II 2 GlnK or B0450 or Z0562 or Ecs0504 SW:GLNK_ECOLI (P38504) (112 aa) fasta scores: E(): 1.4e-27, 69.64% id in 112 aa. Note this CDS is also highly similar to the upstrean CDS BP2699 fasta scores: E(): 3.6e-29 75% identity in 112 aa.


ensembl_gene_id: BP2738
symbol: bapC
gene_biotype: protein_coding
description:
  Probable ammonium transporter (Pseudogene); (C)7 in pertussis; CCACCC in parapertussis and bronchiseptica.


ensembl_gene_id: BP2741
symbol: BP2741
gene_biotype: protein_coding
description:
  Similar to many putative transcriptional regulators e.g. Rhizobium loti transcriptional regulatory protein Mlr4117 TR:Q98ER4 (EMBL:AP003003) (205 aa) fasta scores: E(): 3.5e-42, 63.21% id in 193 aa.


ensembl_gene_id: BP2742
symbol: BP2742
gene_biotype: protein_coding
description:
  Similar to many putative membrane transport proteins e.g. Rhizobium loti transmembrane transport protein Mll4118 TR:Q98ER5 (EMBL:AP003003) (446 aa) fasta scores: E(): 4.8e-105, 66.9% id in 414 aa.


