# geneInfo

ensembl_gene_id: BP0001
symbol: gidA
gene_biotype: protein_coding
description:
  Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: BP0002
symbol: gidB
gene_biotype: protein_coding
description:
  Glucose inhibited division protein B; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: BP0003
symbol: parA
gene_biotype: protein_coding
description:
  ParA family protein; Similar to Caulobacter crescentus chromosome partitioning protein ParA or Cc3753 SW:PARA_CAUCR (O05189) (267 aa) fasta scores: E(): 1.9e-46, 49.412% id in 255 aa, and to Bacillus subtilis sporulation initiation inhibitor protein Soj SW:SOJ_BACSU (P37522) (253 aa) fasta scores: E(): 2.7e-44, 48.988% id in 247 aa.


ensembl_gene_id: BP0004
symbol: BP0004
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus acetyltransferase, GnaT family Cc2209 TR:Q9A685 (EMBL:AE005892) (207 aa) fasta scores: E(): 1.8e-07, 34.653% id in 202 aa, and to Rhizobium meliloti putative acetyltransferase protein Smc02449 TR:CAC47203 (EMBL:AL591791) (308 aa) fasta scores: E(): 6.1e-05, 31.818% id in 242 aa.


ensembl_gene_id: BP0005
symbol: parB
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida probable chromosome partitioning protein ParB SW:PARB_PSEPU (P31857) (290 aa) fasta scores: E(): 3.9e-40, 48.136% id in 295 aa; Belongs to the ParB family.


ensembl_gene_id: BP0007
symbol: tufA
gene_biotype: protein_coding
description:
  tRNA-Thr; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: BP0008
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.


ensembl_gene_id: BP0009
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: BP0010
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: BP0011
symbol: rplA
gene_biotype: protein_coding
description:
  50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: BP0013
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: BP0014
symbol: rplL
gene_biotype: protein_coding
description:
  50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: BP0015
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: BP0016
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: BP0020
symbol: BP0020
gene_biotype: protein_coding
description:
  Probable two-component sensor protein (Pseudogene); HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: BP0022
symbol: BP0022
gene_biotype: protein_coding
description:
  Probable two-component response regulator (Pseudogene); HMMPfam hit to PF00072, Response regulator receiver domain.


ensembl_gene_id: BP0025
symbol: BP0025
gene_biotype: protein_coding
description:
  Putative racemase (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. Similar to Rhodococcus spAD45 putative racemase IsoG TR:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): 3.3e-16, 45.370% id in 108 aa, and to Thermoplasma volcanium L-carnitine dehydratase TVG1215416 TR:BAB60328 (EMBL:AP000995) (399 aa) fasta scores: E(): 1.7e-14, 41.509% id in 106 aa. Similar to N-terminal regions of several CDSs including BP0416, BP3709, BP0253, BP3318, BP0199.


ensembl_gene_id: BP0026
symbol: BP0026
gene_biotype: protein_coding
description:
  Putative thiolase; Similar to Mycobacterium tuberculosis CDC1551 nonspecific lipid-transfer protein mt1663 TR:AAK45933 (EMBL:AE007030) (402 aa) fasta scores: E(): 5.1e-14, 27.229% id in 415 aa, and to Pseudomonas fluorescens PhlC TR:Q51727 (EMBL:U41818) (398 aa) fasta scores: E(): 5.2e-15, 27.188% id in 320 aa.


ensembl_gene_id: BP0027
symbol: BP0027
gene_biotype: protein_coding
description:
  MaoC family protein; Similar to Archaeoglobus fulgidus MaoC protein af2313 TR:O27971 (EMBL:AE000944) (151 aa) fasta scores: E(): 3.3e-19, 46.154% id in 143 aa, and to Rhodococcus spNCIMB 9784. fad-binding protein CampD TR:AAK50623 (EMBL:AF323755) (167 aa) fasta scores: E(): 2.4e-12, 33.562% id in 146 aa.


ensembl_gene_id: BP0028
symbol: BP0028
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator pa0877 TR:Q9I568 (EMBL:AE004522) (298 aa) fasta scores: E(): 1e-17, 27.985% id in 268 aa, and to Rhizobium loti probable transcriptional regulator mlr2195 TR:Q98IY2 (EMBL:AP002999) (397 aa) fasta scores: E(): 3.5e-17, 29.825% id in 285 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0029
symbol: BP0029
gene_biotype: protein_coding
description:
  Similar to Deinococcus radiodurans enoyl-CoA hydratase, putative DR0184 TR:Q9RXX1 (EMBL:AE001881) (273 aa) fasta scores: E(): 8e-50, 52.209% id in 249 aa, and to Mycobacterium tuberculosis enoyl-CoA hydratase EchA15 or RV2679 or MTV010.03 TR:O53232 (EMBL:AL021186) (276 aa) fasta scores: E(): 6e-48, 49.621% id in 264 aa. Similar to BP3304, 51.331% identity in 263 aa overlap.


ensembl_gene_id: BP0030
symbol: BP0030
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Methanothermobacter thermautotrophicus conserved protein mth965 TR:O27046 (EMBL:AE000870) (452 aa) fasta scores: E(): 1.2e-26, 31.308% id in 428 aa, and to Agrobacterium tumefaciens Agr_l_2924p agr_l_2924 TR:AAK90029 (EMBL:AE008346) (448 aa) fasta scores: E(): 8.3e-24, 29.888% id in 445 aa.


ensembl_gene_id: BP0032
symbol: BP0032
gene_biotype: protein_coding
description:
  Probable transporter; Similar to Rhodococcus fascians chloramphenicol resistance protein TR:Q52751 (EMBL:Z12001) (391 aa) fasta scores: E(): 1.6e-10, 25.193% id in 389 aa, and to Rhodococcus rhodochrous CmrA TR:O30679 (EMBL:AF015087) (391 aa) fasta scores: E(): 4.2e-12, 25.326% id in 383 aa.


ensembl_gene_id: BP0033
symbol: glyQ
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glycyl-tRNA synthetase alpha chain GlyQ or GlyS(a) or B3560 SW:SYGA_ECOLI (P00960) (303 aa) fasta scores: E(): 1.9e-90, 74.658% id in 292 aa, and to Neisseria meningitidis (serogroups A and B) glycyl-tRNA synthetase alpha chain GlyQ or nma0521 or nmb1932 TR:Q9JRC6 (EMBL:AL162753) (301 aa) fasta scores: E(): 2.7e-96, 75.748% id in 301 aa.


ensembl_gene_id: BP0034
symbol: glyS
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glycyl-tRNA synthetase beta chain GlyS or GlyS(b) or B3559 SW:SYGB_ECOLI (P00961) (688 aa) fasta scores: E(): 3e-69, 40.056% id in 709 aa, and to Pseudomonas aeruginosa glycyl-tRNA synthetase beta chain GlyS or PA0008 TR:Q9I7B8 (EMBL:AE004440) (684 aa) fasta scores: E(): 6.1e-70, 44.600% id in 713 aa.


ensembl_gene_id: BP0035
symbol: BP0035
gene_biotype: protein_coding
description:
  Putative haloacid dehalogenase-like hydrolase; Similar to Pseudomonas fluorescens hisb-like protein TR:Q9F729 (EMBL:AF286536) (213 aa) fasta scores: E(): 3.1e-37, 57.062% id in 177 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0006 pa0006 TR:Q9I7C0 (EMBL:AE004440) (178 aa) fasta scores: E(): 8.4e-38, 58.286% id in 175 aa.


ensembl_gene_id: BP0036
symbol: BP0036
gene_biotype: protein_coding
description:
  Probable acyltransferase; Similar to Neisseria meningitidis lysophosphatidic acid acyltransferase homolog NlaB or NMA0404 TR:Q9XDL6 (EMBL:AF036242) (247 aa) fasta scores: E(): 4.2e-32, 41.277% id in 235 aa, and to Pseudomonas aeruginosa probable acyltransferase PA0005 TR:Q9I7C1 (EMBL:AE004440) (257 aa) fasta scores: E(): 2.1e-37, 42.437% id in 238 aa.


ensembl_gene_id: BP0037
symbol: BP0037
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr5068 protein TR:Q98CP0 (EMBL:AP003005) (252 aa) fasta scores: E(): 3.9e-08, 28.458% id in 253 aa, and to Rhizobium meliloti conserved hypothetical protein smc02768 TR:CAC41413 (EMBL:AL591782) (251 aa) fasta scores: E(): 5.6e-08, 25.306% id in 245 aa.


ensembl_gene_id: BP0038
symbol: gloA
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.


ensembl_gene_id: BP0039
symbol: def1
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: BP0044
symbol: BP0044
gene_biotype: protein_coding
description:
  Transcriptional regulator; Similar to the C-terminal regions of Vibrio anguillarum transcriptional activator protein VanR SW:VANR_VIBAN (P74946) (240 aa) fasta scores: E(): 6.7e-09, 48.611% id in 72 aa, and to Rhizobium loti transcriptional regulator mlr5637 TR:Q98BC5 (EMBL:AP003007) (243 aa) fasta scores: E(): 5.4e-08, 52.459% id in 61 aa.


ensembl_gene_id: BP0045
symbol: BP0045
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0188 TR:Q9I6U6 (EMBL:AE004456) (293 aa) fasta scores: E(): 2e-25, 35.172% id in 290 aa, and to Vibrio cholerae hypothetical protein Vc1229 vc1229 TR:Q9KSM7 (EMBL:AE004202) (291 aa) fasta scores: E(): 5.7e-15, 31.034% id in 290 aa.


ensembl_gene_id: BP0047
symbol: metX
gene_biotype: protein_coding
description:
  Probable malate/L-lactate dehydrogenase (Pseudogene); Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.


ensembl_gene_id: BP0048
symbol: BP0048
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nmb0939 TR:Q9JZQ6 (EMBL:AE002445) (193 aa) fasta scores: E(): 8.9e-38, 56.085% id in 189 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0389 TR:Q9I6A6 (EMBL:AE004476) (206 aa) fasta scores: E(): 6.1e-35, 48.705% id in 193 aa.


ensembl_gene_id: BP0050
symbol: ampG
gene_biotype: protein_coding
description:
  Putative integral membrane signal transducer protein; Similar to Escherichia coli AmpG protein or b0433 or z0536 or ecs0487 SW:AMPG_ECOLI (P36670) (491 aa) fasta scores: E(): 2.6e-88, 61.168% id in 394 aa, and to Neisseria meningitidis putative integral membrane signal transducer protein nma2127 TR:Q9JSU7 (EMBL:AL162758) (427 aa) fasta scores: E(): 1.9e-44, 42.711% id in 391 aa.


ensembl_gene_id: BP0053
symbol: BP0053
gene_biotype: protein_coding
description:
  Outer membrane porin protein precursor (Pseudogene); (T)3 in pertussis; TTCAT in parapertussis and bronchiseptica; Belongs to the aspartate/glutamate racemases family.


ensembl_gene_id: BP0055
symbol: gltK
gene_biotype: protein_coding
description:
  Glutamate/aspartate transport ATP-binding protein (pseudogene); ScanRegExp hit to PS00017, ATP/GTP-binding site motif A (P-loop).


ensembl_gene_id: BP0056
symbol: gltJ
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutamate/aspartate transport system permease protein GltJ or b0654 SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): 1.6e-40, 42.623% id in 244 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter PA1341 TR:Q9I403 (EMBL:AE004563) (248 aa) fasta scores: E(): 6e-44, 47.737% id in 243 aa. Similar to BP0766 57.759% identity (58.515% ungapped) in 232 aa overlap.


ensembl_gene_id: BP0057
symbol: BP0057
gene_biotype: protein_coding
description:
  Similar to Escherichia coli amino-acid ABC transporter binding protein precursor YbeJ or b0655 SW:YBEJ_ECOLI (P37902) (302 aa) fasta scores: E(): 2.3e-48, 45.263% id in 285 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter PA1342 TR:Q9I402 (EMBL:AE004563) (302 aa) fasta scores: E(): 3.4e-51, 48.658% id in 298 aa. Similar to BP0765 51.325% identity (52.013% ungapped) in 302 aa overlap.


ensembl_gene_id: BP0060
symbol: BP0060
gene_biotype: protein_coding
description:
  Regulatory protein (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. Similar to Thiobacillus denitrificans regulatory protein CbbR TR:Q9APD4 (EMBL:AF307090) (316 aa) fasta scores: E(): 0.00013, 28.148% id in 135 aa, and to Streptomyces coelicolor putative LysR-family transcriptional regulatory protein scm1.22C TR:Q9RD21 (EMBL:AL133422) (301 aa) fasta scores: E(): 0.00026, 29.448% id in 163 aa.


ensembl_gene_id: BP0061
symbol: BP0061
gene_biotype: protein_coding
description:
  Putative DNA-binding protein; Similar to Caulobacter crescentus transcriptional regulator Cro/ci family cc2771 TR:Q9A4Q9 (EMBL:AE005942) (119 aa) fasta scores: E(): 0.001, 36.458% id in 96 aa, and to Bradyrhizobium japonicum Id619 TR:Q9AN22 (EMBL:AF322013) (83 aa) fasta scores: E(): 0.11, 34.328% id in 67 aa.


ensembl_gene_id: BP0063
symbol: BP0063
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Pseudomonas aeruginosa hypothetical 29.4 kDa protein TR:Q9RPF6 (EMBL:AF161263) (281 aa) fasta scores: E(): 1.1e-29, 35.294% id in 272 aa, and to Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 3.4e-28, 34.572% id in 269 aa.


ensembl_gene_id: BP0063A
symbol: BP0063A
gene_biotype: protein_coding
description:
  Putative transposase (partial); Similar to the C-terminal regions of Desulfovibrio vulgaris transposase OrfB SWALL:O31218 (EMBL:AF034211) (310 aa) fasta scores: E(): 6.6e-09, 51.47% id in 68 aa, and to Yersinia enterocolitica is1400 transposase B Trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 1.2e-08, 50% id in 68 aa.


ensembl_gene_id: BP0064
symbol: BP0064
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA4336 TR:Q9HW65 (EMBL:AE004850) (194 aa) fasta scores: E(): 5.5e-52, 66.492% id in 191 aa, and to Agrobacterium tumefaciens Agr_l_853p agr_l_853 TR:AAK88998 (EMBL:AE008241) (188 aa) fasta scores: E(): 3.3e-49, 63.102% id in 187 aa. Also similar to BP1542, 65.104% identity (65.104% ungapped) in 192 aa overlap.


ensembl_gene_id: BP0065
symbol: BP0065
gene_biotype: protein_coding
description:
  Putative ferredoxin; Similar to Marinosulfonomonas methylotropha ferredoxin TR:AAK84303 (EMBL:AF354805) (123 aa) fasta scores: E(): 1.8e-07, 35.955% id in 89 aa, and to Burkholderia cepacia Tbc2C monooxygenase TR:Q9EZN9 (EMBL:AF282898) (111 aa) fasta scores: E(): 3.6e-07, 34.694% id in 98 aa.


ensembl_gene_id: BP0066
symbol: BP0066
gene_biotype: protein_coding
description:
  Oxidoreductase; Similar to Marinosulfonomonas methylotropha reductase TR:AAK84310 (EMBL:AF360864) (364 aa) fasta scores: E(): 3.5e-26, 29.830% id in 352 aa, and to Alcaligenes faecalis ferredoxin reductase phnaA TR:Q9WXG6 (EMBL:AB024945) (342 aa) fasta scores: E(): 3.5e-20, 29.167% id in 336 aa.


ensembl_gene_id: BP0067
symbol: BP0067
gene_biotype: protein_coding
description:
  Integral membrane protein; Similar to Pseudomonas aeruginosa probable C4-dicarboxylate transporter pa0886 TR:Q9I559 (EMBL:AE004523) (427 aa) fasta scores: E(): 2.3e-37, 32.812% id in 384 aa, and to Pseudomonas stutzeri probable C4-dicarboxylate transporter DctM TR:CAC44173 (EMBL:AJ313422) (426 aa) fasta scores: E(): 1.3e-36, 32.041% id in 387 aa.


ensembl_gene_id: BP0069
symbol: BP0069
gene_biotype: protein_coding
description:
  Putative membrane protein (pseudogene); (TG)2 in pertussis; (TG)1 in bronchiseptica and parapertussis.


ensembl_gene_id: BP0072
symbol: BP0072
gene_biotype: protein_coding
description:
  Transposase; Similar to Rhizobium meliloti transposase for insertion sequence element IsrM1 TR:CAC47072 (EMBL:AL591790) (123 aa) fasta scores: E(): 1.1, 21.212% id in 99 aa, and to Caulobacter crescentus ISCC3 transposase OrfA cc2728 or cc0625 or cc2657 TR:Q99QI0 (EMBL:AE005939) (125 aa) fasta scores: E(): 1.2, 27.523% id in 109 aa.


ensembl_gene_id: BP0075
symbol: BP0075
gene_biotype: protein_coding
description:
  Similar to Rhodococcus spAD45 glutathione S-transferase IsoJ TR:Q9RBP3 (EMBL:AJ249207) (233 aa) fasta scores: E(): 2.2e-12, 30.732% id in 205 aa, and to Pseudomonas aeruginosa probable glutathione S-transferase pa2813 TR:Q9I030 (EMBL:AE004708) (206 aa) fasta scores: E(): 4.6e-39, 48.058% id in 206 aa.


ensembl_gene_id: BP0076
symbol: ampD
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; Similar to Escherichia coli AmpD protein or b0110 SW:AMPD_ECOLI (P13016) (183 aa) fasta scores: E(): 5e-35, 51.977% id in 177 aa, and to Pseudomonas aeruginosa N-acetyl-anhydromuramyl-L-alanine amidase AmpD or pa4522 TR:Q9ZGA0 (EMBL:AF082575) (188 aa) fasta scores: E(): 1.9e-37, 58.960% id in 173 aa.


ensembl_gene_id: BP0077
symbol: BP0077
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas stutzeri hypothetical 9.0 kDa protein TR:Q9RLD2 (EMBL:AJ249642) (77 aa) fasta scores: E(): 0.021, 33.333% id in 81 aa.


ensembl_gene_id: BP0078
symbol: BP0078
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis hypothetical inner membrane protein nma2189 TR:Q9JSQ1 (EMBL:AL162758) (268 aa) fasta scores: E(): 2.2e-25, 37.184% id in 277 aa, and to Azospirillum brasilense hypothetical 28.8 kDa protein in nifR3-like 5'region SW:YNR3_AZOBR (P45674) (271 aa) fasta scores: E(): 1.6e-13, 31.707% id in 287 aa.


ensembl_gene_id: BP0079
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: BP0085
symbol: bplI
gene_biotype: protein_coding
description:
  Putative integral membrane protein (Pseudogene); (TG)2 in pertussis; (TG)1 in parapertussis and bronchiseptica.


ensembl_gene_id: BP0086
symbol: bplH
gene_biotype: protein_coding
description:
  Putative glycosyl transferase; Identical to the previously sequenced Bordetella parapertussis putative glcnac transferase WlbH TR:O52848 (EMBL:AJ224768) (390 aa) fasta scores: E(): 1.1e-153, 99.487% id in 390 aa, and to Bordetella pertussis and B. bronchiseptica hypothetical 42.8 kDa protein BplH or WlbH TR:Q45386 (EMBL:X90711) (390 aa) fasta scores: E(): 2.2e-154, 99.744% id in 390 aa.


ensembl_gene_id: BP0087
symbol: bplG
gene_biotype: protein_coding
description:
  Probable sugar transferase; Identical to the previously sequenced Bordetella pertussis DNA for lipopolysaccharide biosynthesis locus BplG TR:Q45382 (EMBL:X90711) (197 aa) fasta scores: E(): 2.6e-77, 100.000% id in 197 aa, and to Bordetella bronchiseptica putative transferase WlbG TR:O87997 (EMBL:AJ007747) (197 aa) fasta scores: E(): 2.9e-76, 98.477% id in 197 aa.


ensembl_gene_id: BP0088
symbol: bplF
gene_biotype: protein_coding
description:
  Lipopolysaccharide biosynthesis protein; Identical to the previously sequenced Bordetella pertussis DNA for lipopolysaccharide biosynthesis locus BplF TR:Q45381 (EMBL:X90711) (395 aa) fasta scores: E(): 2.2e-156, 100.000% id in 395 aa, and to Bordetella bronchiseptica putative amino-sugar biosynthesis protein WlbF TR:O87998 (EMBL:AJ007747) (395 aa) fasta scores: E(): 6.6e-154, 98.734% id in 395 aa; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: BP0089
symbol: bplE
gene_biotype: protein_coding
description:
  Probable glycosyl transferase; Identical to the previously sequenced Bordetella pertussis DNA for lipopolysaccharide biosynthesis locus BplE TR:Q45380 (EMBL:X90711) (403 aa) fasta scores: E(): 1.2e-163, 100.000% id in 403 aa, and to Bordetella bronchiseptica putative transferase WlbE TR:O87999 (EMBL:AJ007747) (419 aa) fasta scores: E(): 6.7e-170, 99.523% id in 419 aa.


ensembl_gene_id: BP0090
symbol: bplD
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 2-epimerase; Identical to the previously sequenced Bordetella pertussis DNA for lipopolysaccharide biosynthesis locus BplD TR:Q45379 (EMBL:X90711) (362 aa) fasta scores: E(): 1.8e-139, 100.000% id in 362 aa, and to Bordetella bronchiseptica putative UDP-N-acetylglucosamine 2-epimerase WlbD TR:O88000 (EMBL:AJ007747) (362 aa) fasta scores: E(): 2.3e-138, 99.724% id in 362 aa.


ensembl_gene_id: BP0091
symbol: bplC
gene_biotype: protein_coding
description:
  Lipopolysaccharide biosynthesis protein; Identical to the previously sequenced Bordetella pertussis DNA for lipopolysaccharide biosynthesis locus BplC TR:Q45378 (EMBL:X90711) (366 aa) fasta scores: E(): 6.7e-144, 100.000% id in 366 aa, and to Bordetella bronchiseptica putative amino-sugar biosynthesis protein WlbC TR:O88001 (EMBL:AJ007747) (366 aa) fasta scores: E(): 2.5e-143, 99.454% id in 366 aa; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: BP0092
symbol: bplB
gene_biotype: protein_coding
description:
  Probable acetyltransferase; Identical to the previously sequenced Bordetella pertussis and Bordetella bronchiseptica DNA for lipopolysaccharide biosynthesis locus BplB or WlbB TR:Q45377 (EMBL:X90711) (191 aa) fasta scores: E(): 4.3e-79, 100.000% id in 191 aa, and to Pseudomonas aeruginosa probable acetyltransferase WbpD TR:P72135 (EMBL:U50396) (163 aa) fasta scores: E(): 4.2e-48, 77.483% id in 151 aa.


ensembl_gene_id: BP0093
symbol: bplA
gene_biotype: protein_coding
description:
  Probable oxidoreductase; Identical to Bordetella pertussis and Bordetella bronchiseptica DNA for lipopolysaccharide biosynthesis locus BplA or WlbA TR:Q45376 (EMBL:X90711) (350 aa) fasta scores: E(): 1.2e-144, 100.000% id in 350 aa, and similar to Vibrio anguillarum putative dehydrogenase TR:Q9XBT9 (EMBL:AF156256) (318 aa) fasta scores: E(): 3.8e-83, 63.722% id in 317 aa.


ensembl_gene_id: BP0094
symbol: rfaC
gene_biotype: protein_coding
description:
  Probable heptosyltransferase; Identical to the previously sequenced Bordetella pertussis DNA for lipopolysaccharide biosynthesis locus RfaC TR:Q45375 (EMBL:X90711) (335 aa) fasta scores: E(): 6.2e-133, 100.000% id in 335 aa, and to Bordetella bronchiseptica putative heptosyltransferase WaaC TR:O88002 (EMBL:AJ007747) (335 aa) fasta scores: E(): 1.3e-132, 99.701% id in 335 aa, and Similar to Escherichia coli lipopolysaccharide heptosyltransferase-1 RfaC or WaaC or Rfa-2 or B3621 SW:RFAC_ECOLI (P24173) (319 aa) fasta scores: E(): 7.6e-31, 48.485% id in 297 aa.


ensembl_gene_id: BP0095
symbol: kdtA
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: BP0096
symbol: BP0096
gene_biotype: protein_coding
description:
  Putative exported protein; Identical to the previously sequenced Bordetella bronchiseptica putative secreted protein Bblps1.35C TR:O88004 (EMBL:AJ007747) (51 aa) fasta scores: E(): 2.6e-20, 100.000% id in 51 aa.


ensembl_gene_id: BP0097
symbol: baf
gene_biotype: protein_coding
description:
  Bvg accessory factor; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: BP0098
symbol: birA
gene_biotype: protein_coding
description:
  Putative biotin protein ligase; Identical to the previously sequenced Bordetella pertussis putative biotin protein ligase BirA TR:Q9ZIU6 (EMBL:AF016461) (288 aa) fasta scores: E(): 1.2e-110, 100.000% id in 288 aa, and Similar to Escherichia coli BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-coa-carboxylase] synthetase BirA or BioR or DhbB or B3973 SW:BIRA_ECOLI (P06709) (321 aa) fasta scores: E(): 9.5e-13, 32.130% id in 277 aa.


ensembl_gene_id: BP0099
symbol: BP0099
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to Caulobacter crescentus putative ABC transporter, permease protein, Cc2318 TR:Q9A5X9 (EMBL:AE005902) (371 aa) fasta scores: E(): 2.2e-35, 35.925% id in 373 aa, and to Campylobacter jejuni putative ABC transport system permease protein iamb or cj1646 TR:Q9PM30 (EMBL:AL139079) (369 aa) fasta scores: E(): 3.2e-31, 34.451% id in 328 aa.


ensembl_gene_id: BP0100
symbol: BP0100
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa3212 TR:Q9HZ28 (EMBL:AE004744) (264 aa) fasta scores: E(): 1.3e-42, 54.251% id in 247 aa, and to Caulobacter crescentus ABC transporter, ATP-binding protein cc2319 TR:Q9A5X8 (EMBL:AE005902) (278 aa) fasta scores: E(): 2e-42, 54.032% id in 248 aa.


ensembl_gene_id: BP0101A
symbol: BP0101A
gene_biotype: protein_coding
description:
  Putative exported protein (Pseudogene); CA in pertussis; CA(GG) in parapertussis and bronchiseptica.


ensembl_gene_id: BP0101B
symbol: BP0101B
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nmb0868 TR:Q9JZW7 (EMBL:AE002439) (213 aa) fasta scores: E(): 4.5e-24, 43.578% id in 218 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4440 TR:Q9HVX5 (EMBL:AE004858) (209 aa) fasta scores: E(): 2.9e-19, 40.909% id in 220 aa.


ensembl_gene_id: BP0102
symbol: BP0102
gene_biotype: protein_coding
description:
  Similar to Escherichia coli penicillin-binding protein 6 precursor DacC or B0839 SW:DACC_ECOLI (P08506) (400 aa) fasta scores: E(): 3.9e-51, 46.703% id in 364 aa, and to Pseudomonas aeruginosa penicillin-binding protein 5 precursor DacA or DacC or PA3999 TR:Q9X6V7 (EMBL:AF147448) (386 aa) fasta scores: E(): 1.3e-54, 45.528% id in 369 aa; Belongs to the peptidase S11 family.


ensembl_gene_id: BP0103
symbol: BP0103
gene_biotype: protein_coding
description:
  Probable class IV aminotransferase; Similar to Staphylococcus aureus D-alanine aminotransferase TR:Q9KWZ6 (EMBL:Y14816) (282 aa) fasta scores: E(): 3.7e-37, 38.849% id in 278 aa, and to Staphylococcus haemolyticus D-alanine aminotransferase Dat SW:DAAA_STAHA (P54694) (282 aa) fasta scores: E(): 1.1e-38, 38.989% id in 277 aa.


ensembl_gene_id: BP0104
symbol: BP0104
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nma1380 or Nmb1218 TR:Q9JRI4 (EMBL:AL162755) (91 aa) fasta scores: E(): 4.4e-11, 46.988% id in 83 aa, and to Escherichia coli hypothetical protein YbeD or B0631 or Z0776 or ECS0669 SW:YBED_ECOLI (P30977) (87 aa) fasta scores: E(): 4.4e-06, 38.554% id in 83 aa; Belongs to the UPF0250 family.


ensembl_gene_id: BP0105
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: BP0106
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: BP0107
symbol: rfbC
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: BP0108
symbol: rfbD
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: BP0109
symbol: rfbB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli dTDP-glucose 4,6-dehydratase RfbB or RmlB or B2041 SW:RBB1_ECOLI (P37759) (361 aa) fasta scores: E(): 4.6e-73, 52.925% id in 359 aa, and to Pseudomonas aeruginosa dTDP-D-glucose 4,6-dehydratase RmlB or PA5161 TR:Q9HU24 (EMBL:AE004929) (352 aa) fasta scores: E(): 4e-92, 64.672% id in 351 aa; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: BP0112
symbol: metC
gene_biotype: protein_coding
description:
  Putative membrane protein (pseudogene); Signal peptide predicted for BP0111 by SignalP 2.0 HMM (Signal peptide probabilty 0.944) with cleavage site probability 0.242 between residues 40 and 41.


ensembl_gene_id: BP0113
symbol: dsbA
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein DsbA precursor; Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins (By similarity). Required for periplasmic assembly of the pertussis toxin (PTX); Belongs to the thioredoxin family. DsbA subfamily.


ensembl_gene_id: BP0114
symbol: BP0114
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa5052 TR:Q9HUC7 (EMBL:AE004918) (231 aa) fasta scores: E(): 0.001, 28.807% id in 243 aa, and to Xylella fastidiosa hypothetical protein Xf0146 TR:Q9PH00 (EMBL:AE003868) (252 aa) fasta scores: E(): 6.8e-05, 29.167% id in 192 aa.


ensembl_gene_id: BP0115
symbol: argS
gene_biotype: protein_coding
description:
  Similar to Xylella fastidiosa arginyl-tRNA synthetase Xf0147 TR:Q9PGZ9 (EMBL:AE003868) (586 aa) fasta scores: E(): 4e-103, 52.700% id in 537 aa, and to Staphylococcus aureus subspaureus N315. arginyl-tRNA synthetase ArgS or Sa0564 TR:Q99W05 (EMBL:AP003131) (553 aa) fasta scores: E(): 9.9e-65, 40.603% id in 564 aa.


ensembl_gene_id: BP0116
symbol: BP0116
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum hypothetical protein Rsc0288 or Rs03255 SWALL:Q8Y2P7 (EMBL:AL646058) (105 aa) fasta scores: E(): 0.0019, 32.74% id in 113 aa.


ensembl_gene_id: BP0118
symbol: BP0118
gene_biotype: protein_coding
description:
  Transposase for IS1663; Similar to Neisseria meningitidis putative invertase/transposase nma1800 TR:Q9JTF3 (EMBL:AL162757) (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and Acinetobacter spSE19. pilin inverting protein chnY TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): 8.2e-50, 47.516% id in 322 aa.


ensembl_gene_id: BP0119
symbol: BP0119
gene_biotype: protein_coding
description:
  Inner membrane component of binding-protein-dependent transport system; Similar to Thermotoga maritima sugar ABC transporter, permease protein Tm0598 TR:Q9WZ67 (EMBL:AE001734) (277 aa) fasta scores: E(): 3.9e-36, 43.860% id in 228 aa, and to Rhizobium meliloti putative sugar ABC transporter permease protein Smb20233 TR:CAC48624 (EMBL:AL603642) (282 aa) fasta scores: E(): 2.5e-30, 34.717% id in 265 aa.


ensembl_gene_id: BP0120
symbol: BP0120
gene_biotype: protein_coding
description:
  Inner membrane component of binding-protein-dependent transport system; Similar to Erwinia chrysanthemi inner membrane protein togM TR:CAC44118 (EMBL:AJ305144) (296 aa) fasta scores: E(): 9.7e-31, 37.091% id in 275 aa, and to Rhizobium loti permease protein of sugar ABC transporter mll1715 TR:Q98JZ2 (EMBL:AP002998) (307 aa) fasta scores: E(): 6.2e-41, 40.569% id in 281 aa.


ensembl_gene_id: BP0121
symbol: BP0121
gene_biotype: protein_coding
description:
  Probable extracellular solute-binding protein; Similar to Escherichia coli glycerol-3-phosphate-binding periplasmic protein precursor UgpB or B3453 SW:UGPB_ECOLI (P10904) (438 aa) fasta scores: E(): 1.1e-30, 29.120% id in 443 aa, and to Thermotoga maritima glycerol-3-phosphate ABC transporter, periplasmic glycerol-3- phosphate-binding protein Tm1120 TR:Q9X0K4 (EMBL:AE001770) (436 aa) fasta scores: E(): 3.1e-35, 31.829% id in 421 aa.


ensembl_gene_id: BP0122
symbol: BP0122
gene_biotype: protein_coding
description:
  Sugar ABC transporter, ATP-binding protein; Similar to Thermococcus litoralis trehalose/maltose transport ATP-hydrolyzing subunit MalK TR:Q9V306 (EMBL:AF126010) (372 aa) fasta scores: E(): 7.4e-44, 45.205% id in 365 aa, and to Rhizobium meliloti probable glycerol-3-phosphate ABC transporter ATP-binding protein TR:CAC48805 (EMBL:AL603643) (349 aa) fasta scores: E(): 2.1e-49, 50.000% id in 352 aa.


ensembl_gene_id: BP0123
symbol: cpdA
gene_biotype: protein_coding
description:
  Putative cAMP phosphodiesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: BP0124
symbol: BP0124
gene_biotype: protein_coding
description:
  Probable ABC transporter, ATP-binding protein (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. The IS insertion occurred near the C-terminal end (following codon 301). As a consequence, the protein is lacking 26 aa at its C-terminal end. Whether the protein is still functional remains to be elucidated. Similar to Rhizobium loti ABC transporter, ATP-binding protein Mlr7387 TR:Q986F1 (EMBL:AP003011) (361 aa) fasta scores: E(): 2e-39, 49.822% id in 281 aa, and to Caulobacter crescentus spermidine/putrescine ABC transporter, ATP-binding protein cc3134 TR:Q [...]


ensembl_gene_id: BP0126
symbol: BP0126
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti ABC transporter, permease Mlr9016 TR:Q982L0 (EMBL:AP003015) (278 aa) fasta scores: E(): 9.8e-17, 31.395% id in 258 aa, and to Treponema pallidum spermidine/putrescine ABC transporter, permease protein Tp0654 TR:O83660 (EMBL:AE001240) (272 aa) fasta scores: E(): 5.7e-13, 28.077% id in 260 aa.


ensembl_gene_id: BP0128
symbol: BP0128
gene_biotype: protein_coding
description:
  Probable Binding-protein-dependent transport system, permease protein (Pseudogene); (G)4 in pertussis; (G)5 in parapertussis.


ensembl_gene_id: BP0130
symbol: BP0130
gene_biotype: protein_coding
description:
  Probable LacI-family transcriptional regulator (Pseudogene); (GC)4 in pertussis; (GC)5 in parapertussis.


ensembl_gene_id: BP0131
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: BP0133
symbol: rpoN
gene_biotype: protein_coding
description:
  RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: BP0134
symbol: BP0134
gene_biotype: protein_coding
description:
  Similar to Azotobacter vinelandii bacterioferritin-associated ferredoxin Bfd TR:Q9Z5W9 (EMBL:AF121138) (73 aa) fasta scores: E(): 0.004, 40.426% id in 47 aa, and to Neisseria meningitidis putative ferredoxin Nma0965 or Nmb0752 TR:Q9JQR7 (EMBL:AL162754) (66 aa) fasta scores: E(): 4.5e-08, 53.704% id in 54 aa.


ensembl_gene_id: BP0135
symbol: BP0135
gene_biotype: protein_coding
description:
  Similar to Escherichia coli probable transcriptional regulator LrhA or GenR or B2289 SW:LRHA_ECOLI (P36771) (312 aa) fasta scores: E(): 5.4e-21, 33.212% id in 274 aa, and to Rhizobium meliloti putative LysR-family transcriptional regulator Sma1979 TR:AAK65745 (EMBL:AE007294) (290 aa) fasta scores: E(): 6.7e-40, 49.810% id in 263 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0139
symbol: ilvA
gene_biotype: protein_coding
description:
  C-terminal region of an outer membrane porin (Pseudogene); Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: BP0142
symbol: BP0142
gene_biotype: protein_coding
description:
  Similar to Deinococcus radiodurans transcriptional regulator, GntR family Dr0815 TR:Q9RW54 (EMBL:AE001936) (267 aa) fasta scores: E(): 1.7e-09, 30.041% id in 243 aa, and to Bacillus subtilis hypothetical transcriptional regulator YdhC SW:YDHC_BACSU (O05494) (224 aa) fasta scores: E(): 3e-10, 29.469% id in 207 aa.


ensembl_gene_id: BP0143
symbol: BP0143
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identical to the N-terminal region of Bordetella pertussis hypothetical 29.3 kDa protein TR:O30450 (EMBL:AF006000) (273 aa) fasta scores: E(): 9.8e-105, 100.000% id in 273 aa, and similar to Pseudomonas aeruginosa hypothetical protein PA0446 TR:Q9I672 (EMBL:AE004482) (407 aa) fasta scores: E(): 2.7e-92, 57.248% id in 407 aa. Also similar to BP1779 (68.059% identity in 407 aa overlap), and BP3309 (57.143% identity in 399 aa overlap); Belongs to the CoA-transferase III family.


ensembl_gene_id: BP0144
symbol: BP0144
gene_biotype: protein_coding
description:
  Putative lipase; This CDS start with an isoleucine, whereas parapertussis and bronchiseptica start with a methionine. The sequence has been checked and believed to be correct. Identical to the previously sequenced Bordetella pertussis hypothetical 34.3 kDa protein TR:O30449 (EMBL:AF006000) (324 aa) fasta scores: E(): 2.8e-116, 100.000% id in 303 aa, and to Acinetobacter spSE19. acetyl-hydrolase chnC TR:Q9F7D7 (EMBL:AF282240) (300 aa) fasta scores: E(): 1.8e-28, 34.507% id in 284 aa. Also similar to BP2097, 39.583% identity in 288 aa overlap.


ensembl_gene_id: BP0145
symbol: BP0145
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase/isomerase; Identical to the previously sequenced Bordetella pertussis hypothetical 29.5 kDa protein TR:O30448 (EMBL:AF006000) (270 aa) fasta scores: E(): 3e-109, 100.000% id in 270 aa, and similar to Escherichia coli naphthoate synthase MenB or B2262 SW:MENB_ECOLI (P27290) (285 aa) fasta scores: E(): 3.5e-20, 33.969% id in 262 aa.


ensembl_gene_id: BP0148
symbol: BP0148
gene_biotype: protein_coding
description:
  Putative hydroxylase (Pseudogene); Signal peptide predicted for BP0147 by SignalP 2.0 HMM (Signal peptide probabilty 0.926) with cleavage site probability 0.464 between residues 18 and 19.


ensembl_gene_id: BP0149
symbol: BP0149
gene_biotype: protein_coding
description:
  Probable transcriptional regulator; Identical to the previously sequenced Bordetella pertussis hypothetical 29.0 kDa protein TR:O30445 (EMBL:AF006000) (260 aa) fasta scores: E(): 2.1e-107, 100.000% id in 260 aa, and similar to Pseudomonas aeruginosa probable transcriptional regulator pa1630 TR:Q9I392 (EMBL:AE004590) (288 aa) fasta scores: E(): 3e-31, 40.329% id in 243 aa.


ensembl_gene_id: BP0152
symbol: BP0152
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identical to the previously sequenced Bordetella pertussis hypothetical 59.5 kDa protein TR:O30443 (EMBL:AF006000) (568 aa) fasta scores: E(): 3.9e-82, 99.103% id in 223 aa, and similar to Bacillus halodurans Bh1817 protein TR:Q9KBV7 (EMBL:AP001513) (225 aa) fasta scores: E(): 2.6e-26, 44.144% id in 222 aa.


ensembl_gene_id: BP0153
symbol: BP0153
gene_biotype: protein_coding
description:
  Probable dioxygenase; Identical to the previously sequenced Bordetella pertussis hypothetical 15.6 kDa protein TR:O30442 (EMBL:AF006000) (143 aa) fasta scores: E(): 6.4e-60, 100.000% id in 143 aa, and similar to Pseudomonas aeruginosa probable ring-cleaving dioxygenase Pa0817 TR:Q9I5C2 (EMBL:AE004517) (141 aa) fasta scores: E(): 6.1e-33, 60.584% id in 137 aa.


ensembl_gene_id: BP0154
symbol: brg1
gene_biotype: protein_coding
description:
  LysR family transcriptional regulator; Identical to the previously sequenced Bordetella pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta scores: E(): 6.6e-108, 99.656% id in 291 aa, and similar to Pseudomonas aeruginosa probable transcriptional regulator pa0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores: E(): 1.9e-38, 46.259% id in 294 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0155
symbol: serA
gene_biotype: protein_coding
description:
  D-3-phosphoglycerate dehydrogenase; Identical to the previously sequenced Bordetella pertussis D-3-phosphoglycerate dehydrogenase homolog SerA TR:O30440 (EMBL:AF006000) (399 aa) fasta scores: E(): 4.9e-146, 99.749% id in 399 aa, and similar to Escherichia coli D-3-phosphoglycerate dehydrogenase SerA or B2913 SW:SERA_ECOLI (P08328) (409 aa) fasta scores: E(): 1.6e-81, 56.500% id in 400 aa; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: BP0156
symbol: BP0156
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pasteurella multocida hypothetical protein Pm1939 TR:Q9CJQ5 (EMBL:AE006230) (151 aa) fasta scores: E(): 1.5e-25, 51.370% id in 146 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4714 TR:Q9HV84 (EMBL:AE004885) (149 aa) fasta scores: E(): 8.1e-21, 46.853% id in 143 aa.


ensembl_gene_id: BP0158
symbol: BP0158
gene_biotype: protein_coding
description:
  Two-component response regulator; Similar to Escherichia coli transcriptional regulatory protein PcoR SW:PCOR_ECOLI (Q47456) (226 aa) fasta scores: E(): 4.7e-46, 53.846% id in 221 aa, and to Pseudomonas aeruginosa probable two-component response regulator Pa1437 TR:Q9I3R0 (EMBL:AE004573) (229 aa) fasta scores: E(): 9.4e-56, 63.393% id in 224 aa.


ensembl_gene_id: BP0159
symbol: phoR
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphate regulon sensor protein PhoR or NmpB or B0400 SW:PHOR_ECOLI (P08400) (431 aa) fasta scores: E(): 1e-55, 41.458% id in 439 aa, and to Klebsiella pneumoniae phosphate regulon sensor protein PhoR SW:PHOR_KLEPN (P45608) (431 aa) fasta scores: E(): 3.2e-55, 40.961% id in 437 aa.


ensembl_gene_id: BP0160
symbol: phoB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphate regulon transcriptional regulatory protein PhoB or B0399 or Z0497 or ECS0449 SW:PHOB_ECOLI (P08402) (229 aa) fasta scores: E(): 2.6e-52, 59.211% id in 228 aa, and to Vibrio cholerae DNA-binding response regulator PhoB or VC0719 TR:Q9KU11 (EMBL:AE004158) (229 aa) fasta scores: E(): 1.3e-54, 60.526% id in 228 aa.


ensembl_gene_id: BP0161
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: BP0162
symbol: BP0162
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa5528 TR:Q9HT45 (EMBL:AE004965) (284 aa) fasta scores: E(): 1.7e-05, 35.294% id in 323 aa, and to Agrobacterium tumefaciens Agr_l_2266p agr_l_2266 TR:AAK89700 (EMBL:AE008313) (378 aa) fasta scores: E(): 2.7e-05, 28.075% id in 374 aa.


ensembl_gene_id: BP0163
symbol: BP0163
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical 22.2 kDa protein in ubiE-rfaH intergenic region YigP or B3834 SW:YIGP_ECOLI (P27852) (201 aa) fasta scores: E(): 0.0058, 27.397% id in 219 aa, and to Vibrio cholerae hypothetical protein Vc0084 TR:Q9KVQ5 (EMBL:AE004099) (207 aa) fasta scores: E(): 0.00021, 24.413% id in 213 aa.


ensembl_gene_id: BP0164
symbol: ubiB
gene_biotype: protein_coding
description:
  Probable ubiquinone biosynthesis protein; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.


ensembl_gene_id: BP0166
symbol: BP0166
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. Similar to The N-terminal region of Burkholderia cepacia hypothetical 33.4 kDa protein TR:Q9ZGQ4 (EMBL:AF076477) (283 aa) fasta scores: E(): 6e-45, 81.538% id in 130 aa.


ensembl_gene_id: BP0168
symbol: BP0168
gene_biotype: protein_coding
description:
  C-terminal region of a probable ABC transporter, ATP-binding protein (Pseudogene); (G)1 in pertussis; (G)2 in parapertussis.


ensembl_gene_id: BP0169
symbol: BP0169
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0537 TR:Q9I5Z9 (EMBL:AE004490) (202 aa) fasta scores: E(): 8.8e-51, 71.981% id in 207 aa, and to Rhizobium loti Mll4130 protein TR:Q98EQ7 (EMBL:AP003003) (212 aa) fasta scores: E(): 2.3e-29, 48.205% id in 195 aa.


ensembl_gene_id: BP0170
symbol: rhlE
gene_biotype: protein_coding
description:
  Putative ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.


ensembl_gene_id: BP0171
symbol: BP0171
gene_biotype: protein_coding
description:
  LysE family efflux protein; Similar to Escherichia coli homoserine/homoserine lactone efflux protein RhtB or B3824 SW:RHTB_ECOLI (P27847) (206 aa) fasta scores: E(): 2e-23, 37.198% id in 207 aa, and to Pseudomonas aeruginosa hypothetical protein Pa5249 TR:Q9HTU5 (EMBL:AE004937) (209 aa) fasta scores: E(): 4.7e-39, 54.106% id in 207 aa. Also similar to BP0568, 42.654% identity in 211 aa overlap.


ensembl_gene_id: BP0172
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: BP0173
symbol: BP0173
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Mycobacterium leprae hypothetical proline rich protein Ml1505 TR:Q9CBW9 (EMBL:AL583922) (182 aa) fasta scores: E(): 7, 23.977% id in 171 aa.


ensembl_gene_id: BP0178
symbol: BP0178
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Synechocystis sp hypothetical 31.6 kDa protein slr0841 TR:Q55426 (EMBL:D64003) (291 aa) fasta scores: E(): 0.00023, 33.775% id in 151 aa. Its N-terminal region is similar to the adjacent CDS, BP0177, 44.643% identity (46.584% ungapped) in 168 aa overlap.


ensembl_gene_id: BP0179
symbol: BP0179
gene_biotype: protein_coding
description:
  Similar to Xylella fastidiosa hypothetical protein Xf2609 TR:Q9PAA9 (EMBL:AE004068) (299 aa) fasta scores: E(): 9.9e-46, 55.230% id in 239 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0858 TR:Q9I583 (EMBL:AE004520) (312 aa) fasta scores: E(): 1.2e-32, 42.017% id in 238 aa; Belongs to the UPF0176 family.


ensembl_gene_id: BP0180
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: BP0181
symbol: BP0181
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical/unknown transmembrane protein Smc03794 TR:CAC47756 (EMBL:AL591793) (83 aa) fasta scores: E(): 4.5, 30.488% id in 82 aa.


ensembl_gene_id: BP0182
symbol: BP0182
gene_biotype: protein_coding
description:
  Putative iron sulfur binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: BP0183
symbol: BP0183
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Xanthomonas oryzae pvoryzae putative outer membrane protein TR:Q9EY32 (EMBL:AY010120) (593 aa) fasta scores: E(): 8.2e-16, 24.540% id in 652 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2543 TR:Q9I0U1 (EMBL:AE004682) (579 aa) fasta scores: E(): 9.1e-13, 24.342% id in 608 aa.


ensembl_gene_id: BP0184
symbol: BP0184
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Neisseria meningitidis putative periplasmic protein Nma0295 TR:Q9JWM6 (EMBL:AL162752) (1371 aa) fasta scores: E(): 1.4e-18, 23.644% id in 1383 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2542 TR:Q9I0U2 (EMBL:AE004682) (1221 aa) fasta scores: E(): 7.2e-14, 27.344% id in 1280 aa.


ensembl_gene_id: BP0186
symbol: BP0186
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa0803 TR:Q9I5D5 (EMBL:AE004515) (146 aa) fasta scores: E(): 1.4e-32, 61.111% id in 144 aa, and to Rhizobium loti Mlr1197 protein TR:Q98L34 (EMBL:AP002996) (137 aa) fasta scores: E(): 3.1e-19, 44.203% id in 138 aa.


ensembl_gene_id: BP0187
symbol: BP0187
gene_biotype: protein_coding
description:
  Putative lyase; Similar to Streptomyces coelicolor putative lyase Sci7.11C TR:Q9X9X9 (EMBL:AL096743) (130 aa) fasta scores: E(): 0.0041, 33.846% id in 130 aa, and to Streptomyces sp daunomycin C-14 hydroxylase TR:Q55078 (EMBL:U50973) (275 aa) fasta scores: E(): 0.015, 29.851% id in 134 aa.


ensembl_gene_id: BP0190
symbol: BP0190
gene_biotype: protein_coding
description:
  Probable orn/arg/lys decarboxylase; Similar to Escherichia coli biodegradative arginine decarboxylase AdiA or Adi or B4117 SW:ADIA_ECOLI (P28629) (755 aa) fasta scores: E(): 4.9e-69, 38.070% id in 767 aa, and to Pseudomonas aeruginosa probable orn/arg/lys decarboxylase Pa1818 TR:Q9I2S7 (EMBL:AE004608) (751 aa) fasta scores: E(): 3.1e-150, 49.340% id in 758 aa.


ensembl_gene_id: BP0191
symbol: BP0191
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Smc00763 TR:CAC45279 (EMBL:AL591784) (394 aa) fasta scores: E(): 4.8e-59, 57.431% id in 397 aa, and to Haemophilus influenzae hypothetical protein Hi0933 SW:YHIN_HAEIN (P44941) (401 aa) fasta scores: E(): 5.7e-65, 44.444% id in 396 aa.


ensembl_gene_id: BP0193
symbol: sodA
gene_biotype: protein_coding
description:
  Superoxide dismutase [Mn]; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: BP0194
symbol: BP0194
gene_biotype: protein_coding
description:
  Probable metal transporter; Similar to Pseudomonas aeruginosa hypothetical protein Pa4467 TR:Q9HVV1 (EMBL:AE004860) (310 aa) fasta scores: E(): 2.5e-41, 54.864% id in 257 aa, and to Myxococcus xanthus GufA protein SW:GUFA_MYXXA (Q06916) (254 aa) fasta scores: E(): 2.1e-36, 49.412% id in 255 aa. Also similar to BP2140, 47.458% identity (47.782% ungapped) in 295 aa overlap.


ensembl_gene_id: BP0195
symbol: gcvT
gene_biotype: protein_coding
description:
  Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.


ensembl_gene_id: BP0196
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: BP0197
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: BP0198
symbol: BP0198
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative L-lactate dehydrogenase operon regulatory protein LldR or LctR or B3604 SW:LLDR_ECOLI (P33233) (258 aa) fasta scores: E(): 4.3e-12, 31.915% id in 235 aa, and to Streptomyces coelicolor putative GntR-family transcriptional regulator Scc24.13C TR:Q9L0A4 (EMBL:AL163003) (235 aa) fasta scores: E(): 4.3e-14, 34.222% id in 225 aa.


ensembl_gene_id: BP0199
symbol: BP0199
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium meliloti putative conserved membrane-anchored protein Smb21182 TR:CAC49248 (EMBL:AL603645) (394 aa) fasta scores: E(): 2e-56, 40.769% id in 390 aa, and to Sphingomonas aromaticivorans hypothetical 41.0 kDa protein TR:O86014 (EMBL:AF079317) (388 aa) fasta scores: E(): 8.9e-55, 41.732% id in 381 aa; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP0200
symbol: BP0200
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas putida and Pseudomonas sp hypothetical 34.5 kDa protein in clcB-clcD intergenic region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 1.3e-33, 36.246% id in 309 aa, and to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.8e-32, 34.663% id in 326 aa.


ensembl_gene_id: BP0204
symbol: BP0204
gene_biotype: protein_coding
description:
  Similar to Escherichia coli EcoVIII restriction endonuclease TR:Q46974 (EMBL:U48806) (333 aa) fasta scores: E(): 9.4e-22, 34.677% id in 248 aa, and to Haemophilus influenzae type II restriction enzyme HindIII or Hi1393 SW:T2D3_HAEIN (P43870) (300 aa) fasta scores: E(): 7.4e-20, 30.420% id in 286 aa.


ensembl_gene_id: BP0205
symbol: BP0205
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to the C-terminal regions of Thermus thermophilus nusA/infB operon DNA TR:Q56428 (EMBL:Z48001) (275 aa) fasta scores: E(): 0.00019, 39.583% id in 96 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4718 TR:Q9HV80 (EMBL:AE004885) (158 aa) fasta scores: E(): 0.00051, 33.962% id in 106 aa.


ensembl_gene_id: BP0206
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: BP0207
symbol: BP0207
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative aldehyde dehydrogenase Smb20891 TR:CAC49585 (EMBL:AL603646) (477 aa) fasta scores: E(): 5.1e-123, 68.697% id in 476 aa, and to Rhizobium loti aldehyde dehydrogenase Mlr5236 TR:Q98CA3 (EMBL:AP003006) (479 aa) fasta scores: E(): 1.8e-118, 67.230% id in 473 aa. Similar to several B. pertussis CDSs including BP0360 (44.025% identity in 477 aa overlap), BP2303, BP0757, BP1976.


ensembl_gene_id: BP0208
symbol: BP0208
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti putative oxidoreductase Mlr7440 TR:Q986B0 (EMBL:AP003011) (476 aa) fasta scores: E(): 8.5e-78, 46.970% id in 462 aa, and to Rhizobium meliloti putative oxidoreductase protein Smc00985 TR:CAC45439 (EMBL:AL591785) (496 aa) fasta scores: E(): 1.5e-76, 44.255% id in 470 aa. Also similar to BP3139, 49.785% identity in 466 aa overlap.


ensembl_gene_id: BP0209
symbol: BP0209
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative GntR-family transcriptional regulator Sma0246 TR:AAK64788 (EMBL:AE007207) (233 aa) fasta scores: E(): 4e-20, 36.771% id in 223 aa, and to Rhizobium loti transcriptional regulator Mll8575 TR:Q982M5 (EMBL:AP003014) (247 aa) fasta scores: E(): 5.4e-19, 36.123% id in 227 aa.


ensembl_gene_id: BP0212
symbol: vgb
gene_biotype: protein_coding
description:
  Putative hydrolase; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2- amino-butenoic acid; Belongs to the Vgb family.


ensembl_gene_id: BP0213
symbol: BP0213
gene_biotype: protein_coding
description:
  Putative acetyltransferase; Similar to Alcaligenes faecalis phosphinothricin N-acetyltransferase Pat SW:PAT_ALCFA (P31668) (197 aa) fasta scores: E(): 1.4e-35, 59.884% id in 172 aa, and to Caulobacter crescentus phosphinothricin N-acetyltransferase Cc0935 TR:Q9A9P1 (EMBL:AE005770) (180 aa) fasta scores: E(): 3.6e-32, 53.757% id in 173 aa.


ensembl_gene_id: BP0214
symbol: queC
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: BP0215
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.


ensembl_gene_id: BP0216
symbol: sphB1
gene_biotype: protein_coding
description:
  Previously sequenced as Bordetella pertussis autotransporter subtilisin-like protease SphB1 TR:CAC44081 (EMBL:AJ318229) (1039 aa) fasta scores: E(): 0, 100.000% id in 932 aa, and dimilar to Xylella fastidiosa serine protease Xf1026 TR:Q9PEK2 (EMBL:AE003939) (905 aa) fasta scores: E(): 1.1e-45, 31.919% id in 943 aa.


ensembl_gene_id: BP0217
symbol: BP0217
gene_biotype: protein_coding
description:
  Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydrogenase Hbd or Cac2708 SW:HBD_CLOAB (P52041) (282 aa) fasta scores: E(): 7.6e-33, 42.199% id in 282 aa, and to Rhizobium loti 3-hydroxybutyryl-CoA dehydrogenase Mlr6793 TR:Q988C8 (EMBL:AP003010) (309 aa) fasta scores: E(): 3.7e-37, 36.452% id in 310 aa.


ensembl_gene_id: BP0218
symbol: BP0218
gene_biotype: protein_coding
description:
  Similar to Escherichia coli short-chain fatty acids transporter AtoE or B2223 SW:ATOE_ECOLI (P76460) (440 aa) fasta scores: E(): 1.4e-62, 39.636% id in 439 aa, and to Alcaligenes eutrophus hypothetical 47.8 kDa protein TR:Q9F189 (EMBL:AF042280) (446 aa) fasta scores: E(): 1.5e-125, 75.281% id in 445 aa. Also similar to BP0404, 44.988% identity (46.283% ungapped) in 429 aa overlap.


ensembl_gene_id: BP0219
symbol: BP0219
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase Pa4162 TR:Q9HWL9 (EMBL:AE004832) (238 aa) fasta scores: E(): 3.1e-29, 45.887% id in 231 aa, and to Streptomyces coelicolor putative short chain oxidoreductase 2 Scg61.28C TR:Q9K3Y7 (EMBL:AL359949) (253 aa) fasta scores: E(): 1.8e-20, 42.324% id in 241 aa. Similar to BP3244 (49.153% identity in 236 aa overlap) and to BP1222 (44.726% identity in 237 aa overlap.


ensembl_gene_id: BP0220
symbol: BP0220
gene_biotype: protein_coding
description:
  Probable transcriptional regulator; Similar to Rhodococcus opacus PcaR TR:O67983 (EMBL:AF003947) (265 aa) fasta scores: E(): 1.2e-41, 50.602% id in 249 aa, and to Rhizobium meliloti putative transcriptional regulator, IclR family protein Smb20586 TR:CAC49898 (EMBL:AL603647) (251 aa) fasta scores: E(): 2.2e-39, 48.780% id in 246 aa.


ensembl_gene_id: BP0221
symbol: catI
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida 3-oxoadipate CoA-transferase subunit A PcaI SW:PCAI_PSEPU (Q01103) (231 aa) fasta scores: E(): 3.6e-59, 71.689% id in 219 aa, and to Acinetobacter calcoaceticus 3-oxoadipate CoA-transferase subunit A PcaI and CatI SW:PCAI_ACICA (Q43973) (228 aa) fasta scores: E(): 7.8e-54, 65.929% id in 226 aa. Also similar to BP1788 (50.228% identity in 219 aa overlap), and to BP2401 (48.684% identity in 228 aa overlap).


ensembl_gene_id: BP0222
symbol: catJ
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida 3-oxoadipate CoA-transferase subunit B PcaJ SW:PCAJ_PSEPU (Q01104) (212 aa) fasta scores: E(): 1.9e-53, 66.190% id in 210 aa, and to Acinetobacter calcoaceticus 3-oxoadipate CoA-transferase subunit B PcaJ and CatJ SW:PCAJ_ACICA (Q59091) (218 aa) fasta scores: E(): 4.1e-50, 62.981% id in 208 aa. Also similar to BP1789 (50.472% identity in 212 aa overlap), and to BP2400 (49.268% identity in 205 aa overlap).


ensembl_gene_id: BP0223
symbol: catC2
gene_biotype: protein_coding
description:
  Similar to Alcaligenes eutrophus methylmuconolactone isomerase MmlJ TR:O51800 (EMBL:X99639) (91 aa) fasta scores: E(): 5.3e-23, 63.736% id in 91 aa, and to Acinetobacter lwoffii muconolactone delta-isomerase 2 CatC2 SW:CTC2_ACILW (O33951) (96 aa) fasta scores: E(): 1.7e-22, 63.736% id in 91 aa.


ensembl_gene_id: BP0224
symbol: BP0224
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Alcaligenes eutrophus hypothetical 11.0 kDa protein TR:Q9F188 (EMBL:AF042280) (98 aa) fasta scores: E(): 6.7e-25, 65.306% id in 98 aa, and to Caulobacter crescentus hypothetical protein Cc0069 TR:Q9AC00 (EMBL:AE005681) (93 aa) fasta scores: E(): 2.7e-08, 45.122% id in 82 aa.


ensembl_gene_id: BP0225
symbol: catD2
gene_biotype: protein_coding
description:
  Similar to Alcaligenes eutrophus 3-oxoadipate enol-lactone hydrolase CatD2 TR:Q9EV45 (EMBL:AF042280) (259 aa) fasta scores: E(): 4.2e-56, 58.915% id in 258 aa, and to Pseudomonas putida PcaD-like protein TR:Q9WWZ4 (EMBL:AF031417) (228 aa) fasta scores: E(): 1.1e-35, 45.778% id in 225 aa.


ensembl_gene_id: BP0226
symbol: BP0226
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Streptomyces coelicolor hypothetical 34.1 kDa protein Scif3.09C TR:CAC37528 (EMBL:AL590982) (320 aa) fasta scores: E(): 1e-08, 33.529% id in 340 aa.


ensembl_gene_id: BP0227
symbol: psiF
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphate starvation-inducible protein PsiF precursor or B0384 SW:PSIF_ECOLI (P27295) (106 aa) fasta scores: E(): 0.00082, 51.220% id in 82 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4874 TR:Q9HUT9 (EMBL:AE004901) (138 aa) fasta scores: E(): 2.9e-11, 50.562% id in 89 aa.


ensembl_gene_id: BP0229
symbol: BP0229
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida beta-D-hydroxybutyrate dehydrogenase BdhA TR:Q9AE70 (EMBL:AJ310211) (256 aa) fasta scores: E(): 1.6e-35, 45.349% id in 258 aa, and to Pseudomonas SpGM101 beta-hydroxybutyrate dehydrogenase HbdH TR:Q9KH52 (EMBL:AF271714) (255 aa) fasta scores: E(): 2.1e-35, 45.736% id in 258 aa.


ensembl_gene_id: BP0231
symbol: pcaC
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); ScanRegExp hit to PS00136, Serine proteases, subtilase family, aspartic acid active site.


ensembl_gene_id: BP0233
symbol: BP0233
gene_biotype: protein_coding
description:
  Probable oxidoreductase (Pseudogene); ScanRegExp hit to PS00687, Aldehyde dehydrogenases glutamic acid active site.


ensembl_gene_id: BP0234
symbol: BP0234
gene_biotype: protein_coding
description:
  Similar to Rhodobacter capsulatus C4-dicarboxylate-binding periplasmic protein precursor DctP SW:DCTP_RHOCA (P37735) (333 aa) fasta scores: E(): 1.5e-08, 24.074% id in 324 aa, and to Rhizobium meliloti putative ABC transporter periplasmic solute-binding protein Smb20036 TR:CAC48439 (EMBL:AL603642) (338 aa) fasta scores: E(): 3.2e-09, 25.237% id in 317 aa.


ensembl_gene_id: BP0235
symbol: BP0235
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pasteurella multocida hypothetical protein Pm1708 TR:Q9CKB6 (EMBL:AE006207) (634 aa) fasta scores: E(): 7e-37, 27.192% id in 673 aa, and to Haemophilus influenzae hypothetical protein Hi0147 SW:Y147_HAEIN (P44543) (633 aa) fasta scores: E(): 4.2e-36, 27.769% id in 641 aa.


ensembl_gene_id: BP0237
symbol: BP0237
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); ScanRegExp hit to PS00211, ABC transporters family signature.


ensembl_gene_id: BP0238
symbol: folK
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK or B0142 SW:HPPK_ECOLI (P26281) (158 aa) fasta scores: E(): 3.4e-15, 38.854% id in 157 aa, and to Pseudomonas fluorescens 7,8-dihydro-6-hydroxymethylpterin -pyrophosphokinase FolK TR:Q9ZEP9 (EMBL:AJ130846) (133 aa) fasta scores: E(): 1.1e-17, 52.101% id in 119 aa.


ensembl_gene_id: BP0239
symbol: pcnB
gene_biotype: protein_coding
description:
  poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: BP0240
symbol: BP0240
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa0335 TR:Q9I6F6 (EMBL:AE004471) (217 aa) fasta scores: E(): 1e-33, 46.575% id in 219 aa, and to Neisseria meningitidis hypothetical protein Nma1278 TR:Q9JUK0 (EMBL:AL162755) (222 aa) fasta scores: E(): 2e-31, 41.629% id in 221 aa.


ensembl_gene_id: BP0241
symbol: BP0241
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nma1279 TR:Q9JUJ9 (EMBL:AL162755) (243 aa) fasta scores: E(): 1e-19, 35.470% id in 234 aa, and to Escherichia coli hypothetical protein yfge YfgE or B2496 or Z3759 or Ecs3358 SW:YFGE_ECOLI (P76570) (248 aa) fasta scores: E(): 6.5e-15, 33.906% id in 233 aa; Belongs to the DnaA family.


ensembl_gene_id: BP0242
symbol: purM
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphoribosylformylglycinamidine cyclo-ligase PurM or PurG or B2499 SW:PUR5_ECOLI (P08178) (344 aa) fasta scores: E(): 1.5e-71, 56.598% id in 341 aa, and to Neisseria meningitidis putative phosphoribosylformylglycinamidine cyclo-ligase PurM or Nma1421 TR:Q9JUA2 (EMBL:AL162755) (344 aa) fasta scores: E(): 1.4e-84, 67.151% id in 344 aa.


ensembl_gene_id: BP0243
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: BP0244
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: BP0245
symbol: dedA
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Escherichia coli Deda protein or B2317 or Z3579 or Ecs3201 SW:DEDA_ECOLI (P09548) (219 aa) fasta scores: E(): 6.7e-36, 51.485% id in 202 aa, and to Burkholderia mallei DedA TR:Q9AI54 (EMBL:AF285636) (226 aa) fasta scores: E(): 5.3e-51, 64.929% id in 211 aa.


ensembl_gene_id: BP0246
symbol: amiC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiC precursor or B2817 SW:AMIC_ECOLI (Q46929) (417 aa) fasta scores: E(): 8.8e-41, 50.608% id in 411 aa, and to Pseudomonas aeruginosa N-acetylmuramoyl-L-alanine amidase AmiA or Pa5538 TR:Q9HT36 (EMBL:AE004966) (397 aa) fasta scores: E(): 1e-33, 41.667% id in 408 aa.


ensembl_gene_id: BP0247
symbol: BP0247
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical protein YjeE or B4168 or Z5775 or Ecs5144 SW:YJEE_ECOLI (P31805) (153 aa) fasta scores: E(): 1.6e-19, 44.218% id in 147 aa, and to Neisseria meningitidis hypothetical protein Nmb0457 TR:Q9K0V2 (EMBL:AE002401) (153 aa) fasta scores: E(): 8.7e-18, 44.375% id in 160 aa.


ensembl_gene_id: BP0248
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: BP0249
symbol: BP0249
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa5466 TR:Q9HTA4 (EMBL:AE004959) (314 aa) fasta scores: E(): 1.1e-31, 43.189% id in 301 aa, and to Rhizobium meliloti hypothetical transmembrane protein Smc01358 TR:CAC45885 (EMBL:AL591786) (311 aa) fasta scores: E(): 3.2e-19, 31.922% id in 307 aa.


ensembl_gene_id: BP0250
symbol: BP0250
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.1e-49, 44.207% id in 328 aa, and to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.3e-40, 39.752% id in 322 aa.


ensembl_gene_id: BP0251
symbol: BP0251
gene_biotype: protein_coding
description:
  Similar to Escherichia coli transcriptional activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 5.5e-19, 32.155% id in 283 aa, and to Rhizobium loti transcriptional regulator Mlr7023 TR:Q987J8 (EMBL:AP003010) (301 aa) fasta scores: E(): 1.7e-21, 34.237% id in 295 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0252
symbol: ggt
gene_biotype: protein_coding
description:
  Similar to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt or B3447 SW:GGT_ECOLI (P18956) (580 aa) fasta scores: E(): 1.6e-52, 35.484% id in 589 aa, and to Vibrio cholerae gamma-glutamyltranspeptidase Vc0194 TR:Q9KVF2 (EMBL:AE004109) (588 aa) fasta scores: E(): 5e-98, 49.206% id in 567 aa.


ensembl_gene_id: BP0253
symbol: BP0253
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa3592 TR:Q9HY34 (EMBL:AE004779) (395 aa) fasta scores: E(): 1.4e-94, 68.144% id in 361 aa, and to Rhizobium meliloti putative conserved membrane-anchored protein Smb21182 TR:CAC49248 (EMBL:AL603645) (394 aa) fasta scores: E(): 7.2e-57, 44.986% id in 369 aa; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP0254
symbol: BP0254
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.2e-48, 45.122% id in 328 aa, and to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.8e-44, 43.750% id in 320 aa.


ensembl_gene_id: BP0258
symbol: BP0258
gene_biotype: protein_coding
description:
  ScanRegExp hit to PS01156, TonB-dependent receptor proteins signature 2; Belongs to the GbsR family.


ensembl_gene_id: BP0259
symbol: cydA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or B0733 SW:CYDA_ECOLI (P11026) (522 aa) fasta scores: E(): 1.8e-121, 60.980% id in 510 aa, and to Vibrio cholerae cytochrome D ubiquinol oxidase subunit I Vc1844 TR:Q9KR03 (EMBL:AE004260) (541 aa) fasta scores: E(): 1.7e-122, 60.148% id in 542 aa.


ensembl_gene_id: BP0260
symbol: cydB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or B0734 or Z0901 or Ecs0769 SW:CYDB_ECOLI (P11027) (379 aa) fasta scores: E(): 4.5e-71, 50.529% id in 378 aa, and to Brucella abortus cytochrome D oxidase subunit II CydB TR:Q9FDD0 (EMBL:AF284438) (384 aa) fasta scores: E(): 1.6e-78, 55.789% id in 380 aa.


ensembl_gene_id: BP0261
symbol: BP0261
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Escherichia coli protein YbgT or B0734.1 SW:YBGT_ECOLI (P56100) (37 aa) fasta scores: E(): 0.00014, 56.250% id in 32 aa, and to Vibrio cholerae hypothetical protein Vc1842 TR:Q9KR05 (EMBL:AE004260) (35 aa) fasta scores: E(): 1.3e-07, 63.636% id in 33 aa.


ensembl_gene_id: BP0262
symbol: BP0262
gene_biotype: protein_coding
description:
  Probable ATP-binding component of ABC transporter; Similar to Escherichia coli transport ATP-binding protein CydD or HtrD or B0887 SW:CYDD_ECOLI (P29018) (588 aa) fasta scores: E(): 1.9e-57, 38.529% id in 571 aa, and to Shewanella sp barophilic bacterium DNA for pressure regulated cluster CydD TR:P96012 (EMBL:D88785) (601 aa) fasta scores: E(): 7.7e-53, 37.367% id in 562 aa.


ensembl_gene_id: BP0263
symbol: BP0263
gene_biotype: protein_coding
description:
  Probable ATP-binding component of ABC transporter; Similar to Escherichia coli transport ATP-binding protein CydC or MdrA or MdrH or SurB or B0886 SW:CYDC_ECOLI (P23886) (573 aa) fasta scores: E(): 5.4e-45, 34.535% id in 527 aa, and to Vibrio cholerae transport ATP-binding protein CydC or Vc1180 TR:Q9KSS6 (EMBL:AE004198) (573 aa) fasta scores: E(): 1.3e-48, 35.818% id in 550 aa.


ensembl_gene_id: BP0264
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: BP0266
symbol: BP0266
gene_biotype: protein_coding
description:
  Probable LysR-family transcriptional regulator (Pseudogene); Signal peptide predicted for BP0266 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.991 between residues 28 and 29.


ensembl_gene_id: BP0268
symbol: BP0268
gene_biotype: protein_coding
description:
  N-terminal region of an outer membrane porin (Pseudogene); HMMPfam hit to PF00267, Gram-negative porin.


ensembl_gene_id: BP0272
symbol: BP0272
gene_biotype: protein_coding
description:
  Integrase (remnant); Partial CDS. Lacking both the N-terminal region and a stop codon. Similar to Bacteriophage SfII integrase Int TR:O21941 (EMBL:AF021347) (205 aa) fasta scores: E(): 0.024, 33.333% id in 78 aa, and to Escherichia coli Int protein Int TR:CAC43408 (EMBL:X16664) (386 aa) fasta scores: E(): 0.11, 39.726% id in 73 aa.


ensembl_gene_id: BP0273
symbol: sspB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli stringent starvation protein B SspB or B3228 or Z4586 or Ecs4101 SW:SSPB_ECOLI (P25663) (165 aa) fasta scores: E(): 9.6e-13, 40.845% id in 142 aa, and to Neisseria meningitidis stringent starvation protein B Nmb1952 TR:Q9JXN9 (EMBL:AE002543) (130 aa) fasta scores: E(): 9.6e-19, 50.407% id in 123 aa.


ensembl_gene_id: BP0274
symbol: sspA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli stringent starvation protein A SspA or Ssp or Pog or B3229 SW:SSPA_ECOLI (P05838) (211 aa) fasta scores: E(): 5.4e-29, 42.857% id in 203 aa, and to Neisseria meningitidis stringent starvation protein A Nmb1953 TR:Q9JXN8 (EMBL:AE002543) (201 aa) fasta scores: E(): 1.4e-56, 70.443% id in 203 aa.


ensembl_gene_id: BP0275
symbol: petC
gene_biotype: protein_coding
description:
  Similar to Chromatium vinosum cytochrome C1 precursor PetC SW:CY1_CHRVI (O31216) (244 aa) fasta scores: E(): 2.7e-26, 41.637% id in 281 aa, and to Neisseria meningitidis ubiquinol--cytochrome C reductase, cytochrome C1 Nmb2051 TR:Q9JXH1 (EMBL:AE002555) (266 aa) fasta scores: E(): 6.6e-32, 42.908% id in 282 aa.


ensembl_gene_id: BP0276
symbol: petB
gene_biotype: protein_coding
description:
  Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: BP0277
symbol: petA
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome C reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: BP0278
symbol: mscL
gene_biotype: protein_coding
description:
  Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: BP0279
symbol: BP0279
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa4445 TR:Q9HVX2 (EMBL:AE004859) (252 aa) fasta scores: E(): 8.6e-49, 53.516% id in 256 aa, and to Neisseria meningitidis hypothetical protein Nma0382 SW:Y382_NEIMA (Q9JWG6) (249 aa) fasta scores: E(): 6.7e-46, 50.996% id in 251 aa.


ensembl_gene_id: BP0280
symbol: degQ
gene_biotype: protein_coding
description:
  Protease; Similar to Escherichia coli protease DegQ precursor or HhoA or B3234 SW:DEGQ_ECOLI (P39099) (455 aa) fasta scores: E(): 1.6e-38, 41.642% id in 341 aa, and to Pseudomonas aeruginosa AlgW protein or Pa4446 TR:Q9HVX1 (EMBL:AE004859) (389 aa) fasta scores: E(): 5.9e-58, 51.862% id in 376 aa.


ensembl_gene_id: BP0282
symbol: BP0282
gene_biotype: protein_coding
description:
  Putative regulatory protein; Similar to Bacillus subtilis protease synthase and sporulation negative regulatory protein Pai2 PaiB SW:PAIB_BACSU (P21341) (207 aa) fasta scores: E(): 3.2e-17, 30.476% id in 210 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4182 TR:Q9HWJ9 (EMBL:AE004834) (212 aa) fasta scores: E(): 3.6e-27, 41.237% id in 194 aa.


ensembl_gene_id: BP0283
symbol: BP0283
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative 2-hydroxyacid dehydrogenase in phoH-csgG intergenic region YcdW or B1033 SW:YCDW_ECOLI (P75913) (325 aa) fasta scores: E(): 2.7e-30, 36.364% id in 297 aa, and to Rhizobium loti probable dehydrogenase Mll7048 TR:Q987H7 (EMBL:AP003010) (307 aa) fasta scores: E(): 1.1e-35, 42.391% id in 276 aa.


ensembl_gene_id: BP0284
symbol: BP0284
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti probable extracellular solute-binding protein, family 5 Sma2075 TR:AAK65791 (EMBL:AE007299) (543 aa) fasta scores: E(): 2e-63, 36.364% id in 539 aa, and to Rhizobium loti ABC transporter oligopeptide-binding protein Mlr3395 TR:Q98GC1 (EMBL:AP003001) (536 aa) fasta scores: E(): 8e-52, 33.594% id in 512 aa. Also similar to BP2293, 59.693% identity in 521 aa overlap.


ensembl_gene_id: BP0285
symbol: BP0285
gene_biotype: protein_coding
description:
  Similar to Escherichia coli acetyl esterase Aes or B0476 SW:AES_ECOLI (P23872) (319 aa) fasta scores: E(): 2.7e-29, 35.032% id in 314 aa, and to Streptomyces coelicolor putative lipase Sc4b10.32 TR:Q9FC55 (EMBL:AL391515) (316 aa) fasta scores: E(): 2.6e-28, 36.760% id in 321 aa.


ensembl_gene_id: BP0286
symbol: BP0286
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa0791 TR:Q9I5E7 (EMBL:AE004514) (262 aa) fasta scores: E(): 1.2e-37, 44.898% id in 245 aa, and to Rhizobium loti probable transcriptional regulator Mll2686 TR:Q98HW2 (EMBL:AP003000) (292 aa) fasta scores: E(): 2.3e-36, 43.902% id in 246 aa. Also similar to BP0288 (40.840% identity in 262 aa overlap), and to BP3550 (41.121% identity in 214 aa overlap).


ensembl_gene_id: BP0287
symbol: leuA-2
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate).


ensembl_gene_id: BP0288
symbol: BP0288
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1235 TR:Q9I4A3 (EMBL:AE004553) (260 aa) fasta scores: E(): 1.1e-46, 52.697% id in 241 aa, and to Rhizobium loti probable transcriptional regulator Mll2686 TR:Q98HW2 (EMBL:AP003000) (292 aa) fasta scores: E(): 3.4e-35, 40.927% id in 259 aa.


ensembl_gene_id: BP0289
symbol: ilvD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli dihydroxy-acid dehydratase IlvD or B3771 SW:ILVD_ECOLI (P05791) (616 aa) fasta scores: E(): 9.7e-180, 75.041% id in 617 aa, and to Neisseria meningitidis dihydroxy-acid dehydratase Nmb1188 or Nmb1150 TR:Q9JS61 (EMBL:AE002466) (619 aa) fasta scores: E(): 5.7e-183, 73.506% id in 619 aa. Also similar to BP3043, 36.661% identity (40.653% ungapped) in 611 aa overlap; Belongs to the IlvD/Edd family.


ensembl_gene_id: BP0290
symbol: BP0290
gene_biotype: protein_coding
description:
  Probable transporter; Similar to Rhizobium loti transmembrane efflux protein Mlr4084 TR:Q98EU2 (EMBL:AP003003) (397 aa) fasta scores: E(): 8.6e-82, 64.987% id in 397 aa, and to Streptomyces coelicolor putative transmembrane efflux protein Sch24.37 TR:Q9X8V1 (EMBL:AL049826) (404 aa) fasta scores: E(): 2e-71, 56.566% id in 396 aa. Also similar to BP0940 (36.896% identity in 393 aa overlap), and to BP1608 (48.947% identity in 380 aa overlap).


ensembl_gene_id: BP0291
symbol: BP0291
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1859 TR:Q9I2N6 (EMBL:AE004612) (295 aa) fasta scores: E(): 7e-66, 59.386% id in 293 aa, and to Neisseria meningitidis putative LysR-family transcriptional regulator Nma0601 TR:Q9JW03 (EMBL:AL162753) (299 aa) fasta scores: E(): 7.2e-46, 45.392% id in 293 aa. Also similar to BP1607, 58.703% identity (58.703% ungapped) in 293 aa overlap; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0294
symbol: BP0294
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); Dephosphorylates the 5' and 2'(3')-phosphates of deoxyribonucleotides; Belongs to the 5'(3')-deoxyribonucleotidase family.


ensembl_gene_id: BP0298
symbol: BP0298
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa2789 TR:Q9I054 (EMBL:AE004706) (359 aa) fasta scores: E(): 6.5e-06, 33.134% id in 335 aa, and to Agrobacterium tumefaciens Agr_l_258p TR:AAK88699 (EMBL:AE008210) (357 aa) fasta scores: E(): 0.042, 26.897% id in 290 aa.


ensembl_gene_id: BP0299
symbol: BP0299
gene_biotype: protein_coding
description:
  MarR-family transcriptional regulator; Similar to Rhodopseudomonas palustris transcriptional activatory protein BadR SW:BADR_RHOPA (O07458) (175 aa) fasta scores: E(): 7.3e-06, 28.873% id in 142 aa, and to Rhizobium loti transcriptional regulator Mll5432 TR:Q98BT7 (EMBL:AP003006) (156 aa) fasta scores: E(): 6.6e-22, 48.905% id in 137 aa.


ensembl_gene_id: BP0300
symbol: BP0300
gene_biotype: protein_coding
description:
  Putative esterase; Similar to Pseudomonas paucimobilis esterase TR:Q9APE2 (EMBL:AF305841) (284 aa) fasta scores: E(): 4.4e-12, 28.058% id in 278 aa, and to Pseudomonas spCA10. hypothetical 31.6 kDa protein TR:Q9AQQ0 (EMBL:AB047272) (289 aa) fasta scores: E(): 2.2e-63, 58.845% id in 277 aa.


ensembl_gene_id: BP0301
symbol: BP0301
gene_biotype: protein_coding
description:
  Similar to Rhodopseudomonas palustris putative ABC transporter substrate binding protein HbaE TR:O07470 (EMBL:U75364) (392 aa) fasta scores: E(): 4.5e-32, 32.741% id in 394 aa, and to Pseudomonas spCA10. putative ABC transporter subunit TR:Q9AQP4 (EMBL:AB047548) (386 aa) fasta scores: E(): 1.7e-50, 41.237% id in 388 aa.


ensembl_gene_id: BP0302
symbol: BP0302
gene_biotype: protein_coding
description:
  Probable branched-chain amino acid transport system, permease component; Similar to Rhodopseudomonas palustris putative ABC transporter subunit HbaF TR:O07469 (EMBL:U75364) (286 aa) fasta scores: E(): 1.9e-34, 45.333% id in 300 aa, and to Rhizobium meliloti putative permease ABC transporter protein smc03118 TR:CAC47554 (EMBL:AL591792) (295 aa) fasta scores: E(): 1.9e-22, 35.593% id in 295 aa; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: BP0303
symbol: BP0303
gene_biotype: protein_coding
description:
  Probable branched-chain amino acid transport system, permease component; Similar to Rhizobium meliloti putative permease ABC transporter protein Smc03117 TR:CAC47555 (EMBL:AL591792) (330 aa) fasta scores: E(): 4.2e-27, 39.000% id in 300 aa, and to Agrobacterium tumefaciens Agr_l_1453p TR:AAK89305 (EMBL:AE008271) (335 aa) fasta scores: E(): 4.9e-28, 38.658% id in 313 aa; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: BP0304
symbol: BP0304
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative branched-chain amino acid transport ATP-binding protein Scf42.19C TR:Q9L2J9 (EMBL:AL137165) (266 aa) fasta scores: E(): 9.1e-30, 43.243% id in 259 aa, and to Rhizobium meliloti putative branched-chain amino acid uptake ABC transporter ATP-binding protein Smb20785 TR:CAC49877 (EMBL:AL603647) (254 aa) fasta scores: E(): 1.8e-26, 41.057% id in 246 aa.


ensembl_gene_id: BP0305
symbol: BP0305
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF or B3454 SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: E(): 7.5e-27, 44.915% id in 236 aa, and to Alcaligenes eutrophus TR:P95538 (EMBL:D64144) (240 aa) fasta scores: E(): 7e-54, 67.521% id in 234 aa.


ensembl_gene_id: BP0309
symbol: BP0309
gene_biotype: protein_coding
description:
  Probable short chain dehydrogenase (Pseudogene); HMMPfam hit to PF00678; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: BP0310
symbol: BP0310
gene_biotype: protein_coding
description:
  Similar to Azoarcus evansii putative acyl-CoA dehydrogenase TR:AAL02066 (EMBL:AF320253) (404 aa) fasta scores: E(): 2.7e-99, 71.318% id in 387 aa, and to Thauera aromatica putative acyl-CoA dehydrogenase TR:Q9AJS9 (EMBL:AJ278289) (388 aa) fasta scores: E(): 3e-95, 67.700% id in 387 aa.


ensembl_gene_id: BP0311
symbol: BP0311
gene_biotype: protein_coding
description:
  Probable acid-coenzyme A ligase; Similar to Rhodopseudomonas palustris benzoate-coenzyme A ligase BadA TR:Q59760 (EMBL:L42322) (521 aa) fasta scores: E(): 1.1e-49, 34.990% id in 523 aa, and to Azoarcus evansii 2-aminobenzoate-CoA ligase TR:AAL02069 (EMBL:AF320253) (542 aa) fasta scores: E(): 5.2e-121, 58.165% id in 545 aa.


ensembl_gene_id: BP0312
symbol: BP0312
gene_biotype: protein_coding
description:
  Similar to Pseudomonas SpdJ-12. 4-hydroxybenzoyl-CoA thioesterase FcbC TR:Q9RBQ8 (EMBL:AF051771) (142 aa) fasta scores: E(): 7.8e-07, 33.333% id in 132 aa, and to Bacillus halodurans 4-hydroxybenzoyl-CoA thioesterase Bh1999 TR:Q9KBC9 (EMBL:AP001514) (138 aa) fasta scores: E(): 3.8e-05, 26.772% id in 127 aa.


ensembl_gene_id: BP0313
symbol: BP0313
gene_biotype: protein_coding
description:
  Similar to Azoarcus evansii hypothetical 14.6 kDa protein TR:AAL02075 (EMBL:AF320254) (132 aa) fasta scores: E(): 3e-28, 55.303% id in 132 aa, and to Rhizobium loti Mll5429 protein TR:Q98BU0 (EMBL:AP003006) (137 aa) fasta scores: E(): 3.2e-31, 62.879% id in 132 aa.


ensembl_gene_id: BP0314
symbol: BP0314
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae hypothetical protein Vca1085 TR:Q9KKL8 (EMBL:AE004434) (556 aa) fasta scores: E(): 3.5e-23, 27.632% id in 456 aa, and to Thermotoga maritima conserved hypothetical protein Tm0735 TR:Q9WZJ4 (EMBL:AE001744) (455 aa) fasta scores: E(): 2.1e-13, 30.947% id in 475 aa.


ensembl_gene_id: BP0315
symbol: hemL
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutamate-1-semialdehyde 2,1-aminomutase HemL or Gsa or PopC or B0154 SW:GSA_ECOLI (P23893) (426 aa) fasta scores: E(): 6.9e-94, 60.094% id in 426 aa, and to Neisseria meningitidis glutamate-1-semialdehyde 2,1-aminomutase HemL or Nma0592 SW:GSA_NEIMA (Q9JW10) (427 aa) fasta scores: E(): 3.1e-105, 65.808% id in 427 aa.


ensembl_gene_id: BP0316
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: BP0317
symbol: thiD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphomethylpyrimidine kinase ThiD or B2103 SW:THID_ECOLI (P76422) (266 aa) fasta scores: E(): 0.0004, 24.255% id in 235 aa, and to Pseudomonas aeruginosa phosphomethylpyrimidine kinase ThiD or Pa3975 TR:Q9HX41 (EMBL:AE004815) (265 aa) fasta scores: E(): 3.6e-12, 31.298% id in 262 aa.


ensembl_gene_id: BP0318
symbol: rubA
gene_biotype: protein_coding
description:
  Rubredoxin; Similar to Acinetobacter calcoaceticus rubredoxin RubA SW:RUBR_ACICA (P42453) (54 aa) fasta scores: E(): 1.2e-15, 55.556% id in 54 aa, and to Pseudomonas aeruginosa rubredoxin Pa5350 TR:Q9HTK8 (EMBL:AE004947) (55 aa) fasta scores: E(): 6.2e-16, 62.963% id in 54 aa.


ensembl_gene_id: BP0319
symbol: BP0319
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Pseudomonas aeruginosa AlgH or Pa0405 TR:Q9RQ16 (EMBL:AF137022) (189 aa) fasta scores: E(): 2.9e-31, 49.730% id in 185 aa, and to Neisseria meningitidis hypothetical protein Nma1550 TR:Q9JU12 (EMBL:AL162756) (182 aa) fasta scores: E(): 7.6e-30, 43.407% id in 182 aa; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: BP0320
symbol: BP0320
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: BP0321
symbol: pyrB
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida aspartate carbamoyltransferase PyrB SW:PYRB_PSEPU (Q59711) (334 aa) fasta scores: E(): 6.5e-77, 64.821% id in 307 aa, and to Pseudomonas aeruginosa aspartate carbamoyltransferase PyrB or Pa0402 SW:PYRB_PSEAE (Q59653) (334 aa) fasta scores: E(): 2.7e-78, 66.234% id in 308 aa; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: BP0322
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase; Similar to Pseudomonas aeruginosa dihydroorotase-like protein PyrC' or PyrX or Pa0401 SW:PYRX_PSEAE (Q51551) (423 aa) fasta scores: E(): 5.5e-50, 44.041% id in 386 aa, and to Pseudomonas putida dihydroorotase-like protein PyrC' SW:PYRX_PSEPU (Q59712) (424 aa) fasta scores: E(): 2.5e-49, 42.674% id in 389 aa.


ensembl_gene_id: BP0323
symbol: BP0323
gene_biotype: protein_coding
description:
  Acyltransferase; Similar to Neisseria gonorrhoeae 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC SW:PLSC_NEIGO (Q59601) (255 aa) fasta scores: E(): 5.3e-21, 33.862% id in 189 aa, and to Burkholderia pseudomallei putative 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC TR:O69114 (EMBL:AF064070) (289 aa) fasta scores: E(): 6.4e-25, 34.694% id in 245 aa.


ensembl_gene_id: BP0324
symbol: apaH
gene_biotype: protein_coding
description:
  Diadenosine-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.


ensembl_gene_id: BP0325
symbol: BP0325
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3827 TR:Q9HXH5 (EMBL:AE004800) (355 aa) fasta scores: E(): 3e-11, 28.212% id in 358 aa, and to Vibrio cholerae hypothetical protein Vc2499 TR:Q9KP76 (EMBL:AE004319) (356 aa) fasta scores: E(): 9.1e-10, 25.956% id in 366 aa.


ensembl_gene_id: BP0326
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: BP0328
symbol: BP0328
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Bacillus halodurans Bh0200 protein TR:Q9KGB0 (EMBL:AP001507) (107 aa) fasta scores: E(): 3.3, 30.108% id in 93 aa, and to the N-terminal region of Vibrio cholerae UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase Vc0918 TR:Q9KTI4 (EMBL:AE004175) (413 aa) fasta scores: E(): 8.2, 26.126% id in 111 aa. Also similar to BP0934, 48.598% identity (48.598% ungapped) in 107 aa overlap.


ensembl_gene_id: BP0329
symbol: BP0329
gene_biotype: protein_coding
description:
  Similar to Pseudomonas diterpeniphila coenzyme A ligase TdtL TR:AAK95584 (EMBL:AF274704) (543 aa) fasta scores: E(): 3.2e-55, 36.813% id in 546 aa, and to Streptomyces griseus subspgriseus NonL TR:O85737 (EMBL:AF074603) (555 aa) fasta scores: E(): 4.4e-53, 35.754% id in 537 aa. Also similar to BP0930, 60.517% identity (61.308% ungapped) in 542 aa overlap.


ensembl_gene_id: BP0330
symbol: BP0330
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Pseudomonas chlororaphis hypothetical 35.8 kDa protein TR:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta scores: E(): 4e-24, 30.380% id in 316 aa, and to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.3e-23, 31.288% id in 326 aa.


ensembl_gene_id: BP0331
symbol: BP0331
gene_biotype: protein_coding
description:
  Similar to Methanococcus jannaschii hypothetical protein Mj1552 TR:Q58947 (EMBL:U67596) (141 aa) fasta scores: E(): 4.3e-07, 36.842% id in 95 aa, and to Archaeoglobus fulgidus conserved hypothetical protein TR:O29957 (EMBL:AE001085) (165 aa) fasta scores: E(): 2.2e-06, 25.424% id in 118 aa. Also similar to BP0932, 50.400% identity (50.806% ungapped) in 125 aa overlap.


ensembl_gene_id: BP0332
symbol: BP0332
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 3.6e-43, 40.874% id in 389 aa, and to Rhodococcus spNCIMB 9784 non-specific lipid carrier-like protein CampC TR:AAK50624 (EMBL:AF323755) (408 aa) fasta scores: E(): 7.9e-30, 31.807% id in 393 aa. Also highly similar to BP0933, 80.964% identity (81.378% ungapped) in 394 aa overlap.


ensembl_gene_id: BP0333
symbol: BP0333
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase family protein; Similar to Alteromonas carrageenovora arylsulfatase precursor AtsA or Ats SW:ARS_ALTCA (P28607) (328 aa) fasta scores: E(): 8.2e-09, 27.541% id in 305 aa, and to Caulobacter crescentus metallo-beta-lactamase family protein Cc1176 TR:Q9A918 (EMBL:AE005795) (317 aa) fasta scores: E(): 6.4e-13, 29.097% id in 299 aa.


ensembl_gene_id: BP0334
symbol: BP0334
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.3e-37, 41.176% id in 323 aa, and to Pseudomonas putida hypothetical 34.5 kDa protein in clcB-clcD intergenic region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 8.8e-35, 38.816% id in 304 aa.


ensembl_gene_id: BP0337
symbol: BP0337
gene_biotype: protein_coding
description:
  Putative exported protein (pseudogene); Pseudogen. The N-terminal region of this CDS is deleted relative to its orthologues in B. pertussis and B. bronchiseptica. Similar to the C-reminal regions of Rhizobium meliloti conserved hypothetical protein Sma0690 TR:AAK65024 (EMBL:AE007228) (466 aa) fasta scores: E(): 2.3e-08, 28.617% id in 311 aa, and to Escherichia coli hypothetical protein YacH or B0117 SW:YACH_ECOLI (P36682) (617 aa) fasta scores: E(): 8.7e-11, 30.357% id in 280 aa.


ensembl_gene_id: BP0339
symbol: ogt
gene_biotype: protein_coding
description:
  Similar to Escherichia coli methylated-DNA--protein-cysteine methyltransferase Ogt or B1335 SW:OGT_ECOLI (P09168) (171 aa) fasta scores: E(): 1e-25, 42.857% id in 168 aa, and to Caulobacter crescentus methylated-DNA--protein-cysteine methyltransferase Cc0689 TR:Q9AAB5 (EMBL:AE005744) (220 aa) fasta scores: E(): 2.5e-30, 53.254% id in 169 aa.


ensembl_gene_id: BP0340
symbol: alkB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli alkylated DNA repair protein AlkB or AidD or B2212 SW:ALKB_ECOLI (P05050) (216 aa) fasta scores: E(): 9.4e-44, 56.808% id in 213 aa, and to Brucella melitensis AlkB TR:Q9LA70 (EMBL:AF148683) (212 aa) fasta scores: E(): 9.9e-47, 58.294% id in 211 aa.


ensembl_gene_id: BP0341
symbol: BP0341
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr1862 protein TR:Q98JN4 (EMBL:AP002998) (247 aa) fasta scores: E(): 2.1e-59, 61.039% id in 231 aa, and to Caulobacter crescentus hypothetical protein Cc0708 TR:Q9AA98 (EMBL:AE005746) (234 aa) fasta scores: E(): 7.4e-54, 57.778% id in 225 aa.


ensembl_gene_id: BP0342
symbol: BP0342
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa0312 TR:Q9I6H9 (EMBL:AE004469) (164 aa) fasta scores: E(): 5.4e-27, 58.182% id in 165 aa, and to Rhizobium loti Mll0105 protein TR:Q98NK1 (EMBL:AP002994) (167 aa) fasta scores: E(): 1.1e-26, 59.236% id in 157 aa.


ensembl_gene_id: BP0343
symbol: bhuV
gene_biotype: protein_coding
description:
  Putative ATP-binding component of hemin transport system; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.


ensembl_gene_id: BP0344
symbol: bhuU
gene_biotype: protein_coding
description:
  Putative hemin permease; Similar to Yersinia enterocolitica hemin permease HemU TR:P74980 (EMBL:X77867) (334 aa) fasta scores: E(): 4.8e-47, 50.000% id in 286 aa, and to Yersinia pestis hemin transport system permease protein HmuU SW:HMUU_YERPE (Q56992) (334 aa) fasta scores: E(): 7.3e-47, 49.141% id in 291 aa. Also similar to BP3340, 40.256% identity (42.568% ungapped) in 313 aa overlap; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: BP0345
symbol: bhuT
gene_biotype: protein_coding
description:
  Similar to Yersinia enterocolitica hemin binding protein HemT TR:P74979 (EMBL:X77867) (279 aa) fasta scores: E(): 8.2e-29, 37.638% id in 271 aa, and to Yersinia pestis hemin-binding periplasmic protein HmuT precursor SW:HMUT_YERPE (Q56991) (279 aa) fasta scores: E(): 9.4e-29, 37.638% id in 271 aa.


ensembl_gene_id: BP0346
symbol: bhuS
gene_biotype: protein_coding
description:
  Similar to Yersinia pestis hemin transport protein HmuS SW:HMUS_YERPE (Q56990) (345 aa) fasta scores: E(): 1.1e-46, 42.486% id in 346 aa, and to Yersinia enterocolitica hemin transport protein HemS SW:HEMS_YEREN (P31517) (345 aa) fasta scores: E(): 1.2e-46, 43.413% id in 334 aa.


ensembl_gene_id: BP0347
symbol: bhuR
gene_biotype: protein_coding
description:
  Outer membrane heme receptor; Previously sequenced as Bordetella pertussis outer membrane heme receptor BhuR TR:AAK38153 (EMBL:AY032627) (149 aa) fasta scores: E(): 2.7e-49, 100.000% id in 149 aa. Similar to Rhizobium meliloti putative iron transport protein Smc02726 TR:CAC46967 (EMBL:AL591790) (743 aa) fasta scores: E(): 4.6e-37, 37.630% id in 768 aa.


ensembl_gene_id: BP0348
symbol: hurR
gene_biotype: protein_coding
description:
  Heme uptake transmembrane sensor; Similar to Escherichia coli protein FecR or B4292 SW:FECR_ECOLI (P23485) (317 aa) fasta scores: E(): 1e-22, 32.459% id in 305 aa, and to Pseudomonas aeruginosa probable transmembrane sensor Pa1911 TR:Q9I2J3 (EMBL:AE004617) (316 aa) fasta scores: E(): 2.4e-32, 41.118% id in 304 aa.


ensembl_gene_id: BP0349
symbol: hurI
gene_biotype: protein_coding
description:
  Heme uptake regulator; Similar to Escherichia coli probable RNA polymerase sigma factor FecI or B4293 SW:FECI_ECOLI (P23484) (173 aa) fasta scores: E(): 1.2e-26, 50.649% id in 154 aa, and to Pseudomonas aeruginosa putative RNA polymerase sigma factor Pa1912 TR:Q9I2J2 (EMBL:AE004617) (168 aa) fasta scores: E(): 8.9e-31, 55.689% id in 167 aa. Also similar to BP1136, 46.875% identity in 160 aa overlap; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: BP0351
symbol: BP0351
gene_biotype: protein_coding
description:
  Similar to Synechocystis sp ferredoxin PetF or Sll1382 TR:P74159 (EMBL:D90912) (122 aa) fasta scores: E(): 0.074, 28.125% id in 96 aa, and to Anabaena variabilis putative TR:AAL05047 (EMBL:AF410434) (99 aa) fasta scores: E(): 0.015, 30.526% id in 95 aa.


ensembl_gene_id: BP0353
symbol: BP0353
gene_biotype: protein_coding
description:
  Similar to Ralstonia spKN1 ferredoxin-like protein PhyF TR:Q9RAF3 (EMBL:AB031996) (115 aa) fasta scores: E(): 0.00015, 36.957% id in 92 aa, and to Pseudomonas putida ferredoxin, plant-type NahT SW:FERN_PSEPU (P23263) (108 aa) fasta scores: E(): 0.00022, 30.303% id in 99 aa.


ensembl_gene_id: BP0354
symbol: BP0354
gene_biotype: protein_coding
description:
  Similar to Halobacterium sp ornithine cyclodeaminase Ocd2 or Vng1364G TR:Q9HQ24 (EMBL:AE005056) (328 aa) fasta scores: E(): 3.7e-18, 31.494% id in 308 aa, and to Rhizobium loti ornithine cyclodeaminase Ocd2 or Mlr3204 TR:Q98GR8 (EMBL:AP003001) (321 aa) fasta scores: E(): 5.4e-16, 33.127% id in 323 aa.


ensembl_gene_id: BP0356
symbol: BP0356
gene_biotype: protein_coding
description:
  GntR-family transcription regulator; Similar to Rhizobium leguminosarum transcription activator MatR TR:Q9JP74 (EMBL:AF117694) (222 aa) fasta scores: E(): 9.1e-15, 37.824% id in 193 aa, and to Streptomyces coelicolor putative transcriptional regulator Sc4b5.15 TR:Q9ZBV3 (EMBL:AL034443) (225 aa) fasta scores: E(): 1.1e-17, 33.028% id in 218 aa. Also similar to BP2975, 56.034% identity (56.522% ungapped) in 232 aa overlap.


ensembl_gene_id: BP0357
symbol: BP0357
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical protein Sma1368 TR:AAK65408 (EMBL:AE007262) (241 aa) fasta scores: E(): 1e-21, 36.325% id in 234 aa, and to Vibrio cholerae hypothetical protein Vca1052 TR:Q9KKQ0 (EMBL:AE004431) (240 aa) fasta scores: E(): 2.8e-14, 28.507% id in 221 aa.


ensembl_gene_id: BP0358
symbol: BP0358
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Bacillus halodurans Bh2161 protein TR:Q9KAX5 (EMBL:AP001514) (477 aa) fasta scores: E(): 2.9e-34, 46.573% id in 496 aa, and to Bacillus subtilis hypothetical 48.8 kDa protein YhfA TR:O07599 (EMBL:Y14083) (463 aa) fasta scores: E(): 2.6e-16, 32.520% id in 492 aa. Also similar to BP2974, 65.139% identity (65.663% ungapped) in 502 aa overlap.


ensembl_gene_id: BP0359
symbol: BP0359
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Chlamydia muridarum putative coenzyme pqq synthesis protein C Tc0900 TR:Q9PJC9 (EMBL:AE002356) (236 aa) fasta scores: E(): 2.5e-11, 28.729% id in 181 aa, and to Pseudomonas aeruginosa pyrroloquinoline quinone biosynthesis protein C Pqqc or Pa1987 TR:Q9I2C2 (EMBL:AE004625) (250 aa) fasta scores: E(): 2e-06, 28.638% id in 213 aa.


ensembl_gene_id: BP0360
symbol: BP0360
gene_biotype: protein_coding
description:
  Similar to Bacillus stearothermophilus aldehyde dehydrogenase, thermostable AldhT SW:DHAL_BACST (P42329) (488 aa) fasta scores: E(): 1.1e-77, 46.008% id in 476 aa, and to Bacillus subtilis probable aldehyde dehydrogenase YcbD SW:DHA1_BACSU (P42236) (488 aa) fasta scores: E(): 7.9e-77, 45.702% id in 477 aa.


ensembl_gene_id: BP0361
symbol: BP0361
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Citrobacter freundii hypothetical 15.0 kDa protein in dhaT-dhaS intergenic region SW:YDHY_CITFR (P45517) (142 aa) fasta scores: E(): 4.1e-11, 33.803% id in 142 aa, and to Clostridium pasteurianum hypothetical 15.1 kDa protein TR:O30453 (EMBL:AF006034) (143 aa) fasta scores: E(): 5.6e-11, 36.957% id in 138 aa.


ensembl_gene_id: BP0362
symbol: BP0362
gene_biotype: protein_coding
description:
  Similar to Yersinia pseudotuberculosis CDP-6-deoxy-delta-3,4-glucoseen reductase AscD or RfbI SW:ASCD_YERPS (P37911) (328 aa) fasta scores: E(): 1.2e-35, 33.846% id in 325 aa, and to Yersinia pestis CDP-6-deoxy-delta-3,4-glucoseen reductase DdhD TR:CAB63270 (EMBL:AJ251713) (329 aa) fasta scores: E(): 4.9e-36, 33.739% id in 329 aa. Also similar to BP1817, 40.000% identity in 350 aa overlap.


ensembl_gene_id: BP0363
symbol: BP0363
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti probable binding protein component of amino acid ABC transporter Mlr2201 TR:Q98IX6 (EMBL:AP002999) (262 aa) fasta scores: E(): 0.0001, 29.104% id in 134 aa, and to Synechocystis sp hypothetical 30.6 kDa protein Sll0174 TR:Q55556 (EMBL:D63999) (284 aa) fasta scores: E(): 4.9e-29, 41.304% id in 230 aa.


ensembl_gene_id: BP0364
symbol: BP0364
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Smb20179 TR:CAC48579 (EMBL:AL603642) (324 aa) fasta scores: E(): 1.3e-14, 24.615% id in 325 aa, and to Rhizobium loti Mlr3473 protein TR:Q98G63 (EMBL:AP003002) (390 aa) fasta scores: E(): 6.7e-12, 30.864% id in 324 aa.


ensembl_gene_id: BP0368
symbol: gdhA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli NADP-specific glutamate dehydrogenase GdhA or B1761 SW:DHE4_ECOLI (P00370) (447 aa) fasta scores: E(): 3.7e-126, 72.398% id in 442 aa, and to Pasteurella multocida GdhA or Pm0043 TR:Q9CPJ4 (EMBL:AE006038) (449 aa) fasta scores: E(): 2.4e-126, 72.321% id in 448 aa; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: BP0369
symbol: BP0369
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis putative nuclease Nma0348 or Nmb2082 TR:Q9JR99 (EMBL:AL162752) (259 aa) fasta scores: E(): 5e-63, 56.705% id in 261 aa, and to Streptomyces coelicolor putative exodeoxyribonuclease Sce87.25C TR:Q9RKB3 (EMBL:AL132674) (274 aa) fasta scores: E(): 2.3e-48, 47.388% id in 268 aa.


ensembl_gene_id: BP0370
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: BP0371
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(GLN) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: BP0372
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(GLN) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: BP0373
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(GLN) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: BP0374
symbol: mreB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli rod shape-determining protein MreB or EnvB or RodY or B3251 SW:MREB_ECOLI (P13519) (347 aa) fasta scores: E(): 2.6e-88, 72.595% id in 343 aa, and to Vibrio cholerae MreB or Vc0415 TR:Q9ZA92 (EMBL:AF079234) (347 aa) fasta scores: E(): 2.6e-91, 74.487% id in 341 aa.


ensembl_gene_id: BP0376
symbol: mreD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli rod shape-determining protein MreD or B3249 or Z4607 or Ecs4121 SW:MRED_ECOLI (P16927) (162 aa) fasta scores: E(): 1.5e-06, 33.333% id in 117 aa, and to Pseudomonas aeruginosa rod shape-determining protein MreD or Pa4479 TR:Q9HVU2 (EMBL:AE004862) (164 aa) fasta scores: E(): 1.5e-09, 31.507% id in 146 aa.


ensembl_gene_id: BP0377
symbol: mrdA
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.


ensembl_gene_id: BP0378
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: BP0379
symbol: ldh
gene_biotype: protein_coding
description:
  Similar to Alcaligenes eutrophus L-lactate dehydrogenase Ldh SW:LDH_ALCEU (Q07251) (349 aa) fasta scores: E(): 1.4e-89, 66.097% id in 351 aa, and to Escherichia coli hypothetical 38.9 kDa protein in dinG-glnQ intergenic region YbiC or B0801 SW:YBIC_ECOLI (P30178) (361 aa) fasta scores: E(): 5.4e-36, 35.277% id in 343 aa; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: BP0380
symbol: BP0380
gene_biotype: protein_coding
description:
  Putative Sodium:sulfate symportert; Similar to Escherichia coli putative tartrate carrier YgjE or B3063 SW:TTDT_ECOLI (P39414) (487 aa) fasta scores: E(): 1.6e-25, 26.141% id in 482 aa, and to Alcaligenes eutrophus membrane protein SW:MEMP_ALCEU (Q07252) (513 aa) fasta scores: E(): 1.6e-127, 72.525% id in 495 aa.


ensembl_gene_id: BP0381
symbol: SlmA
gene_biotype: protein_coding
description:
  Putative TetR-family transcriptional regulator; Similar to Escherichia coli Ttk protein or B3641 SW:TTK_ECOLI (P06969) (198 aa) fasta scores: E(): 1.6e-19, 44.693% id in 179 aa, and to Vibrio cholerae transcriptional regulator, TetR family vc0214 TR:Q9KVD2 (EMBL:AE004111) (210 aa) fasta scores: E(): 1.9e-24, 48.148% id in 189 aa.


ensembl_gene_id: BP0382
symbol: BP0382
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to Neisseria meningitidis hydrolase, putative Nmb0040 TR:Q9K1P1 (EMBL:AE002362) (237 aa) fasta scores: E(): 1e-20, 37.674% id in 215 aa, and to Rhizobium meliloti conserved hypothetical protein Smc01730 TR:CAC41872 (EMBL:AL591783) (258 aa) fasta scores: E(): 4.3e-20, 36.058% id in 208 aa.


ensembl_gene_id: BP0383
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: BP0385
symbol: BP0385
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3931 TR:Q9HX85 (EMBL:AE004811) (259 aa) fasta scores: E(): 3.5e-62, 68.775% id in 253 aa, and to Xylella fastidiosa outer membrane protein Xf0873 TR:Q9PF05 (EMBL:AE003927) (261 aa) fasta scores: E(): 1.8e-53, 57.812% id in 256 aa. Also similar to BP2818, 53.585% identity in 265 aa overlap.


ensembl_gene_id: BP0386
symbol: BP0386
gene_biotype: protein_coding
description:
  Putative thioredoxin; Similar to Treponema pallidum thioredoxin TptrX TR:Q9R788 (EMBL:U95250) (185 aa) fasta scores: E(): 1.5e-08, 32.143% id in 140 aa, and to Neisseria meningitidis thioredoxin, putative Nmb1958 TR:Q9JXN4 (EMBL:AE002544) (166 aa) fasta scores: E(): 8e-16, 34.375% id in 160 aa.


ensembl_gene_id: BP0387
symbol: BP0387
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Haemophilus influenzae hypothetical protein Hi1658 precursor SW:YRAP_HAEIN (P45301) (193 aa) fasta scores: E(): 8.2e-20, 39.037% id in 187 aa, and to Pasteurella multocida hypothetical protein Pm0649 TR:Q9CN01 (EMBL:AE006101) (194 aa) fasta scores: E(): 5.4e-16, 36.464% id in 181 aa.


ensembl_gene_id: BP0388
symbol: gmhA
gene_biotype: protein_coding
description:
  Probable phosphosugar isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.


ensembl_gene_id: BP0390
symbol: rsmI
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: BP0391
symbol: ogt-2
gene_biotype: protein_coding
description:
  methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: BP0395
symbol: BP0395
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Mycobacterium tuberculosis hypothetical 29.7 kDa protein Rv2307c or Mt2364 or Mtcy339.02 SW:YN07_MYCTU (Q50658) (281 aa) fasta scores: E(): 7.3e-16, 32.491% id in 277 aa, and to Escherichia coli from bases 2662068 to 2677236 Bem46 or B2534 TR:P77538 (EMBL:AE000340) (293 aa) fasta scores: E(): 9.3e-15, 28.279% id in 244 aa.


ensembl_gene_id: BP0396
symbol: BP0396
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical protein Sma1780 TR:AAK65640 (EMBL:AE007284) (147 aa) fasta scores: E(): 5.4e-17, 39.855% id in 138 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2880 TR:Q9HZW7 (EMBL:AE004714) (171 aa) fasta scores: E(): 1.1e-27, 51.064% id in 141 aa.


ensembl_gene_id: BP0397
symbol: BP0397
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical 27.8 kDa protein in celF-katE intergenic region YdjC or B1733 SW:YDJC_ECOLI (P37794) (249 aa) fasta scores: E(): 0.00011, 25.993% id in 277 aa, and to Rhizobium loti Mll3087 protein TR:Q98H07 (EMBL:AP003001) (272 aa) fasta scores: E(): 2.7e-11, 34.420% id in 276 aa.


ensembl_gene_id: BP0398
symbol: BP0398
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3556 TR:Q9HY61 (EMBL:AE004776) (549 aa) fasta scores: E(): 4.1e-31, 30.059% id in 509 aa, and to Salmonella typhimurium hypothetical 61.8 kDa protein in pmrG-pmrD intergenic region TR:O52327 (EMBL:AF036677) (548 aa) fasta scores: E(): 3.1e-26, 31.445% id in 353 aa.


ensembl_gene_id: BP0399
symbol: BP0399
gene_biotype: protein_coding
description:
  Putative glycosyl transferase; Similar to Shigella flexneri GtrbI TR:Q9RPZ6 (EMBL:AF139596) (306 aa) fasta scores: E(): 1.2e-41, 40.000% id in 305 aa, and to Synechocystis sp putative glycosyl transferase Sll0501 sll0501 SW:Y501_SYNY3 (Q55487) (318 aa) fasta scores: E(): 3.7e-50, 44.118% id in 306 aa.


ensembl_gene_id: BP0402
symbol: gltS
gene_biotype: protein_coding
description:
  Transposase (Pseudogene); Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.


ensembl_gene_id: BP0404
symbol: atoE
gene_biotype: protein_coding
description:
  Similar to Escherichia coli short-chain fatty acids transporter AtoE or B2223 SW:ATOE_ECOLI (P76460) (440 aa) fasta scores: E(): 2.5e-76, 47.018% id in 436 aa, and to Bacillus halodurans short-chain fatty acids transporter AtoE or bh0358 TR:Q9KFW3 (EMBL:AP001508) (441 aa) fasta scores: E(): 2.8e-96, 57.437% id in 437 aa. Also similar to BP0218, 44.988% identity (46.283% ungapped) in 429 aa overlap.


ensembl_gene_id: BP0405
symbol: BP0405
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2501 TR:Q9I0Y1 (EMBL:AE004677) (55 aa) fasta scores: E(): 0.93, 40.476% id in 42 aa.


ensembl_gene_id: BP0406
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon chain; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: BP0410
symbol: fusA
gene_biotype: protein_coding
description:
  N-terminal region of elongation factor G (Pseudogene); ScanRegExp hit to PS00301, GTP-binding elongation factors signature. Confirmed by InterPro eMOTIF pattern match.


ensembl_gene_id: BP0411
symbol: BP0411
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hypothetical protein Cc0924 TR:Q9A9Q0 (EMBL:AE005769) (135 aa) fasta scores: E(): 1.6e-09, 42.991% id in 107 aa, and to Rhizobium loti Mll8311 protein TR:Q983I8 (EMBL:AP003013) (112 aa) fasta scores: E(): 1e-13, 44.860% id in 107 aa.


ensembl_gene_id: BP0412
symbol: BP0412
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative transcriptional regulator protein Smb20039 TR:CAC48442 (EMBL:AL603642) (474 aa) fasta scores: E(): 3.8e-58, 40.517% id in 464 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa5283 TR:Q9HTS1 (EMBL:AE004941) (458 aa) fasta scores: E(): 3.7e-44, 38.987% id in 454 aa.


ensembl_gene_id: BP0414
symbol: fusA-2
gene_biotype: protein_coding
description:
  C-terminal region of elongation factor G (Pseudogene); HMMPfam hit to PF00679, Elongation factor G C-terminus.


ensembl_gene_id: BP0415
symbol: BP0415
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein Smc03171 TR:CAC47481 (EMBL:AL591792) (250 aa) fasta scores: E(): 2.2e-67, 75.410% id in 244 aa, and to Agrobacterium tumefaciens Agr_l_786p TR:AAK88966 (EMBL:AE008238) (275 aa) fasta scores: E(): 8.8e-68, 74.502% id in 251 aa. Also similar to the N-terminal regions of BP1903 (51.261% identity in 238 aa overlap), and to BP1173 (51.250% identity in 240 aa overlap).


ensembl_gene_id: BP0416
symbol: BP0416
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhodococcus spAD45 putative racemase IsoG TR:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): 6.1e-48, 37.940% id in 398 aa, and to Streptomyces coelicolor putative racemase Scf41.21 TR:Q9RJU8 (EMBL:AL117387) (403 aa) fasta scores: E(): 5.3e-41, 37.317% id in 410 aa; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP0417
symbol: BP0417
gene_biotype: protein_coding
description:
  Similar to Escherichia coli probable enoyl-CoA hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) fasta scores: E(): 1.7e-20, 34.221% id in 263 aa, and to Pseudomonas putida PhaB TR:O84979 (EMBL:AF029714) (263 aa) fasta scores: E(): 9.8e-21, 33.468% id in 248 aa.


ensembl_gene_id: BP0418
symbol: BP0418
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.8e-32, 36.218% id in 312 aa, and to Pseudomonas putida hypothetical 34.5 kDa protein in clcB-clcD intergenic region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 3.2e-32, 35.294% id in 306 aa.


ensembl_gene_id: BP0419
symbol: BP0419
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Bacillus subtilis als operon regulatory protein AlsR SW:ALSR_BACSU (Q04778) (302 aa) fasta scores: E(): 1.9e-26, 30.592% id in 304 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa1826 TR:Q9I2R9 (EMBL:AE004609) (301 aa) fasta scores: E(): 4.1e-30, 39.781% id in 274 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0420
symbol: BP0420
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa1022 TR:Q9I4V2 (EMBL:AE004534) (381 aa) fasta scores: E(): 2.4e-29, 33.159% id in 383 aa, and to Mycobacterium tuberculosis CDC1551 acyl-CoA dehydrogenase, putative Mt3665 TR:AAK48023 (EMBL:AE007168) (385 aa) fasta scores: E(): 5.6e-27, 33.508% id in 382 aa.


ensembl_gene_id: BP0421
symbol: BP0421
gene_biotype: protein_coding
description:
  Putative acyl-CoA dehydrogenase; Similar to Mycobacterium tuberculosis CDC1551 acyl-CoA dehydrogenase, putative Mt3669 TR:AAK48027 (EMBL:AE007168) (318 aa) fasta scores: E(): 1.4e-09, 30.132% id in 302 aa, and to Streptomyces coelicolor putative acyl-CoA dehydrogenase Scf37.28C TR:Q9RJX3 (EMBL:AL133210) (362 aa) fasta scores: E(): 2.6e-05, 28.691% id in 359 aa.


ensembl_gene_id: BP0422
symbol: BP0422
gene_biotype: protein_coding
description:
  Probable thiolase; Similar to Alcaligenes eutrophus acetyl-CoA acetyltransferase PhbA SW:THIL_ALCEU (P14611) (393 aa) fasta scores: E(): 1.5e-60, 46.530% id in 389 aa, and to Rhizobium meliloti probable thiolase Sma1450 TR:AAK65449 (EMBL:AE007266) (396 aa) fasta scores: E(): 7e-83, 60.870% id in 391 aa. Also similar to BP0447 (53.684% identity in 380 aa overlap); Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: BP0425
symbol: BP0425
gene_biotype: protein_coding
description:
  Probable LysR-family transcriptional regulator; Similar to Alcaligenes eutrophus putative regulator of catechol degradation CatR TR:Q9EV43 (EMBL:AF042281) (330 aa) fasta scores: E(): 2.1e-15, 28.136% id in 295 aa, and to Azorhizobium caulinodans nac gene TR:O66393 (EMBL:AJ006238) (311 aa) fasta scores: E(): 1.2e-21, 33.333% id in 300 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0426
symbol: cspA
gene_biotype: protein_coding
description:
  Cold shock protein; Similar to Escherichia coli cold shock protein CspA or B3556 SW:CSPA_ECOLI (P15277) (69 aa) fasta scores: E(): 9.5e-12, 55.385% id in 65 aa, and to Bordetella pertussis cold shock-like protein CspA SW:CSPA_BORPE (Q9Z5R4) (67 aa) fasta scores: E(): 2.9e-16, 68.657% id in 67 aa. Also similar to BP1770 (68.657% identity in 67 aa overlap), BP1772 (71.186% identity in 59 aa overlap), BP2757 (61.905% identity in 63 aa overlap), and to BP3871 (54.545% identity in 66 aa overlap).


ensembl_gene_id: BP0427
symbol: BP0427
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Caulobacter crescentus hypothetical protein Cc3247 TR:Q9A3F7 (EMBL:AE005988) (108 aa) fasta scores: E(): 4, 34.524% id in 84 aa.


ensembl_gene_id: BP0428
symbol: BP0428
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative transcriptional regulator, GntR family protein Smb20773 TR:CAC49865 (EMBL:AL603647) (228 aa) fasta scores: E(): 7e-10, 32.203% id in 177 aa, and to Streptomyces coelicolor putative GntR-family regulatory protein Scbac8d1.07C TR:CAC37896 (EMBL:AL591084) (263 aa) fasta scores: E(): 5.8e-22, 38.164% id in 207 aa.


ensembl_gene_id: BP0429
symbol: BP0429
gene_biotype: protein_coding
description:
  Similar to Homo sapiens delta-1-pyrroline-5-carboxylate dehydrogenase precursor AldH4a1 or P5cdh or AldH4 SW:PUT2_HUMAN (P30038) (563 aa) fasta scores: E(): 7.8e-101, 50.094% id in 531 aa, and to Mycobacterium tuberculosis delta-1-pyrroline-5-carboxylate dehydrogenase RocA or Rv1187 or Mtv005.23 TR:O50443 (EMBL:AL010186) (543 aa) fasta scores: E(): 1.7e-118, 58.868% id in 530 aa.


ensembl_gene_id: BP0430
symbol: BP0430
gene_biotype: protein_coding
description:
  Short-chain fatty acids transporter; Similar to Pseudomonas aeruginosa hypothetical protein Pa2002 TR:Q9I2A7 (EMBL:AE004626) (474 aa) fasta scores: E(): 7.3e-97, 53.564% id in 463 aa, and to Haemophilus influenzae short-chain fatty acids transporter AtoE or Hi0772 SW:ATOE_HAEIN (P44051) (447 aa) fasta scores: E(): 9.5e-33, 28.788% id in 462 aa.


ensembl_gene_id: BP0431
symbol: BP0431
gene_biotype: protein_coding
description:
  Putative molybdopterin oxidoreductase; Similar to Salmonella typhimurium thiosulfate reductase precursor PhsA SW:PHSA_SALTY (P37600) (758 aa) fasta scores: E(): 6.8e-17, 23.279% id in 799 aa, and to Archaeoglobus fulgidus molybdopterin oxidoreductase, molybdopterin binding subunit Af1203 TR:O29065 (EMBL:AE001021) (741 aa) fasta scores: E(): 2.9e-26, 26.489% id in 789 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: BP0432
symbol: BP0432
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa4173 TR:Q9HWK8 (EMBL:AE004833) (132 aa) fasta scores: E(): 1.7e-40, 75.194% id in 129 aa, and to Escherichia coli O157:H7 EDL933 Orf, hypothetical protein YjgH TR:AAG59447 (EMBL:AE005657) (131 aa) fasta scores: E(): 3.7e-30, 62.791% id in 129 aa.


ensembl_gene_id: BP0433
symbol: BP0433
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa4174 TR:Q9HWK7 (EMBL:AE004834) (307 aa) fasta scores: E(): 3.7e-80, 70.588% id in 306 aa, and to Rhizobium meliloti putative transcription regulator protein Smc01092 TR:CAC41866 (EMBL:AL591783) (296 aa) fasta scores: E(): 5.1e-50, 46.918% id in 292 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0435
symbol: BP0435
gene_biotype: protein_coding
description:
  Putative exported protein (Pseudogene); Signal peptide predicted for BP0454 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.995 between residues 21 and 22; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP0436
symbol: BP0436
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Salmonella enteritidis FkbR2 =TR:AAK97549 (EMBL:AF376036) (175 aa) fasta scores: E(): 1.7e-27, 55.634% id in 142 aa, and to Streptomyces hygroscopicus varascomyceticus FkbR2 TR:Q9KIF1 (EMBL:AF235504) (175 aa) fasta scores: E(): 7e-27, 52.055% id in 146 aa.


ensembl_gene_id: BP0437
symbol: BP0437
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Escherichia coli cyn operon transcriptional activator CynR or B0338 SW:CYNR_ECOLI (P27111) (311 aa) fasta scores: E(): 2.3e-21, 31.119% id in 286 aa, and to Rhizobium meliloti putative transcriptional regulator protein Smb20123 TR:CAC48523 (EMBL:AL603642) (298 aa) fasta scores: E(): 7.4e-25, 30.104% id in 289 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0438
symbol: BP0438
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hypothetical protein Cc3562 TR:Q9A2J9 (EMBL:AE006014) (433 aa) fasta scores: E(): 1.5e-66, 42.750% id in 400 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3733 TR:Q9HXQ9 (EMBL:AE004792) (409 aa) fasta scores: E(): 2.3e-59, 40.786% id in 407 aa; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP0441
symbol: BP0441
gene_biotype: protein_coding
description:
  N-terminal region of isovaleryl-CoA dehydrogenase (Pseudogene); HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal domain.


ensembl_gene_id: BP0442
symbol: BP0442
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus metallo-beta-lactamase family protein Cc0395 TR:Q9AB39 (EMBL:AE005712) (317 aa) fasta scores: E(): 2.2e-44, 39.812% id in 319 aa, and to Deinococcus radiodurans conserved hypothetical protein Dr2076 TR:Q9RSP8 (EMBL:AE002043) (347 aa) fasta scores: E(): 1.8e-14, 29.969% id in 327 aa.


ensembl_gene_id: BP0447
symbol: aceK
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase kinase/phosphatase (Pseudogene); In-frame TAG stop codon in pertussis; GAC in parapertussis and bronchiseptica; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: BP0448
symbol: accB
gene_biotype: protein_coding
description:
  Similar to Myxococcus xanthus acetyl-CoA carboxylase carboxyltransferase AccB TR:Q9FAF6 (EMBL:AB039884) (538 aa) fasta scores: E(): 1.7e-93, 47.330% id in 543 aa, and to Homo sapiens 3-methylcrotonyl-Coa carboxylase subunit MccB TR:AAK49409 (EMBL:AF261884) (563 aa) fasta scores: E(): 8.1e-142, 68.182% id in 528 aa.


ensembl_gene_id: BP0449
symbol: accA
gene_biotype: protein_coding
description:
  Similar to Myxococcus xanthus acetyl-Coa Carboxylase biotin carboxylase subunit AccA TR:Q9FAF5 (EMBL:AB039884) (573 aa) fasta scores: E(): 8.6e-85, 46.667% id in 570 aa, and to Escherichia coli biotin carboxylase AccC or FabG or B3256 SW:ACCC_ECOLI (P24182) (449 aa) fasta scores: E(): 6.6e-76, 51.106% id in 452 aa. Also similar to BP0889 (50.224% identity in 446 aa overlap), and BP2996 (47.903% identity in 453 aa overlap).


ensembl_gene_id: BP0450
symbol: BP0450
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa3012 TR:Q9HZJ4 (EMBL:AE004726) (124 aa) fasta scores: E(): 9.3e-07, 42.667% id in 75 aa, and to Clostridium acetobutylicum hypothetical protein Cac1208 TR:Q97JR5 (EMBL:AE007634) (173 aa) fasta scores: E(): 0.75, 33.333% id in 57 aa.


ensembl_gene_id: BP0451
symbol: argM
gene_biotype: protein_coding
description:
  Similar to Escherichia coli succinylornithine transaminase ArgM or AstC or CstC or B1748 SW:ARGM_ECOLI (P77581) (406 aa) fasta scores: E(): 1.9e-57, 44.503% id in 382 aa, and to Pseudomonas aeruginosa probable class III pyridoxal phosphate-dependent aminotransferase Pa0530 TR:Q9I606 (EMBL:AE004489) (393 aa) fasta scores: E(): 2e-65, 48.438% id in 384 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: BP0452
symbol: BP0452
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.9e-42, 41.956% id in 317 aa, and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 3.3e-40, 41.009% id in 317 aa.


ensembl_gene_id: BP0453
symbol: BP0453
gene_biotype: protein_coding
description:
  Low-specificity D-threonine aldolase; Similar to Arthrobacter sp metal-activated pyridoxal enzyme TR:O82872 (EMBL:AB010956) (379 aa) fasta scores: E(): 8.3e-99, 71.698% id in 371 aa, and to Alcaligenes xylosoxydans xylosoxydans low-specificity D-threonine aldolase TR:Q9RBG6 (EMBL:AB026892) (377 aa) fasta scores: E(): 8.3e-44, 45.195% id in 385 aa.


ensembl_gene_id: BP0454
symbol: BP0454
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Brucella abortus 31 kDa immunogenic protein precursor Bcsp31 SW:BCSP_BRUAB (P12920) (329 aa) fasta scores: E(): 1.8e-68, 61.329% id in 331 aa, and to Archaeoglobus fulgidus immunogenic protein Af0635 TR:O29620 (EMBL:AE001060) (330 aa) fasta scores: E(): 1.7e-37, 45.098% id in 306 aa.


ensembl_gene_id: BP0455
symbol: BP0455
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Bacillus halodurans Bh2945 protein Bh2945 TR:Q9K8Q8 (EMBL:AP001517) (656 aa) fasta scores: E(): 1.6e-57, 41.705% id in 657 aa, and to Pasteurella multocida hypothetical protein Pm1580 TR:Q9CKN1 (EMBL:AE006195) (660 aa) fasta scores: E(): 1.5e-56, 37.065% id in 661 aa.


ensembl_gene_id: BP0456
symbol: hemC
gene_biotype: protein_coding
description:
  Putative heme receptor; Similar to Haemophilus ducreyi TonB-dependent heme receptor A precursor TdhA TR:O87381 (EMBL:AF052977) (739 aa) fasta scores: E(): 1.4e-134, 48.743% id in 716 aa, and to Haemophilus influenzae heme/hemopexin utilization protein C precursor HxuC or Hi0113 SW:HXC1_HAEIN (P44523) (744 aa) fasta scores: E(): 2.8e-139, 48.299% id in 735 aa.


ensembl_gene_id: BP0457
symbol: smg
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli protein Smg or B3284 SW:SMG_ECOLI (P30853) (157 aa) fasta scores: E(): 3.5e-12, 40.506% id in 158 aa, and to Vibrio cholerae Smg protein Vc0049 TR:Q9KVU0 (EMBL:AE004096) (158 aa) fasta scores: E(): 4.1e-12, 39.490% id in 157 aa; Belongs to the Smg family.


ensembl_gene_id: BP0459
symbol: BP0459
gene_biotype: protein_coding
description:
  Probable aminoacyl-tRNA synthetase (Pseudogene); HMMPfam hit to PF00749, tRNA synthetases class I (E and Q).


ensembl_gene_id: BP0460
symbol: topB
gene_biotype: protein_coding
description:
  DNA topoisomerase iii; Similar to Escherichia coli DNA topoisomerase III TopB or B1763 SW:TOP3_ECOLI (P14294) (653 aa) fasta scores: E(): 5.8e-37, 33.866% id in 626 aa, and to Haemophilus influenzae DNA topoisomerase III TopB or Hi0444 SW:TOP3_HAEIN (P43704) (651 aa) fasta scores: E(): 6.3e-51, 33.703% id in 632 aa.


ensembl_gene_id: BP0461
symbol: BP0461
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium loti ABC transporter, substrate-binding protein Mlr7949 TR:Q984L7 (EMBL:AP003013) (337 aa) fasta scores: E(): 2.5e-08, 25.085% id in 295 aa, and to Agrobacterium tumefaciens Agr_l_1197p TR:AAK89177 (EMBL:AE008258) (333 aa) fasta scores: E(): 2.6e-07, 25.267% id in 281 aa.


ensembl_gene_id: BP0462
symbol: BP0462
gene_biotype: protein_coding
description:
  ABC-transporter, ATP-binding component; Similar to Streptomyces coelicolor putative ABC-transport protein, ATP-binding component Sc8g12.21 TR:Q9KYY4 (EMBL:AL355753) (270 aa) fasta scores: E(): 3.4e-32, 45.312% id in 256 aa, and to Agrobacterium tumefaciens Agr_l_1200p agr_l_1200 TR:AAK89178 (EMBL:AE008258) (273 aa) fasta scores: E(): 2.9e-34, 48.261% id in 230 aa.


ensembl_gene_id: BP0463
symbol: BP0463
gene_biotype: protein_coding
description:
  ABC transporter, permease component; Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or B0367 SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 7.1e-16, 28.195% id in 266 aa, and to Rhizobium loti ABC transporter, permease Mlr7951 TR:Q984L5 (EMBL:AP003013) (292 aa) fasta scores: E(): 8.7e-36, 37.681% id in 276 aa.


ensembl_gene_id: BP0464
symbol: idnO
gene_biotype: protein_coding
description:
  Similar to Escherichia coli gluconate 5-dehydrogenase IdnO or B4266 SW:IDNO_ECOLI (P39345) (254 aa) fasta scores: E(): 1.8e-29, 40.000% id in 250 aa, and to Agrobacterium tumefaciens Agr_c_4386p TR:AAK88153 (EMBL:AE008155) (256 aa) fasta scores: E(): 1e-45, 54.545% id in 253 aa.


ensembl_gene_id: BP0465
symbol: BP0465
gene_biotype: protein_coding
description:
  Similar to Ustilago maydis indole-3-acetaldehyde dehydrogenase Iad1 TR:Q92460 (EMBL:U74468) (497 aa) fasta scores: E(): 1.2e-68, 42.827% id in 474 aa, and to Bacillus halodurans NADP-dependent aldehyde dehydrogenase DhaS or Bh0539 TR:Q9KFE2 (EMBL:AP001508) (498 aa) fasta scores: E(): 1.3e-69, 41.788% id in 481 aa.


ensembl_gene_id: BP0466
symbol: FabG
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase; Similar to Escherichia coli 7-alpha-hydroxysteroid dehydrogenase HdhA or HsdH or B1619 or Z2624 or Ecs2327 SW:HDHA_ECOLI (P25529) (255 aa) fasta scores: E(): 7.5e-24, 37.751% id in 249 aa, and to Pseudomonas paucimobilis 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX SW:LINX_PSEPA (P50198) (250 aa) fasta scores: E(): 9.2e-27, 40.873% id in 252 aa.


ensembl_gene_id: BP0467
symbol: BP0467
gene_biotype: protein_coding
description:
  Similar to Saccharomyces cerevisiae acetolactate synthase, mitochondrial precursor Ilv2 or Smr1 or Ymr108w or Ym9718.07 SW:ILVB_YEAST (P07342) (687 aa) fasta scores: E(): 1.7e-87, 42.710% id in 583 aa, and to Rhizobium meliloti probable acetolactate synthase isozyme III large subunit protein TR:CAC46693 (EMBL:AL591789) (592 aa) fasta scores: E(): 1.3e-81, 52.860% id in 577 aa. Also similar to BP0789 (50.000% identity in 580 aa overlap).


ensembl_gene_id: BP0468
symbol: BP0468
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida bkd operon transcriptional regulator BkdR SW:BKDR_PSEPU (P42179) (161 aa) fasta scores: E(): 1.3e-19, 39.073% id in 151 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa4508 TR:Q9HVR3 (EMBL:AE004864) (157 aa) fasta scores: E(): 1.4e-20, 42.105% id in 152 aa. Also similar to BP2981 (41.333% identity in 150 aa overlap), and to BP1122 (42.667% identity in 150 aa overlap).


ensembl_gene_id: BP0469
symbol: BP0469
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Escherichia coli O157:H7 hypothetical 36.8 kDa protein Ecs2127 TR:BAB35550 (EMBL:AP002557) (321 aa) fasta scores: E(): 2.3e-34, 38.170% id in 317 aa, and to Rhizobium loti Mll4386 protein TR:Q98E66 (EMBL:AP003004) (309 aa) fasta scores: E(): 8.8e-45, 45.724% id in 304 aa.


ensembl_gene_id: BP0470
symbol: BP0470
gene_biotype: protein_coding
description:
  Similar to Xylella fastidiosa hypothetical protein Xf1478 TR:Q9PDA1 (EMBL:AE003977) (139 aa) fasta scores: E(): 4.3e-20, 48.227% id in 141 aa, and to Homo sapiens similar to kiaa0304 gene product TR:AAH07353 (EMBL:BC007353) (175 aa) fasta scores: E(): 1.8e-14, 37.908% id in 153 aa.


ensembl_gene_id: BP0471
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.


ensembl_gene_id: BP0474
symbol: BP0474
gene_biotype: protein_coding
description:
  Choloylglycine hydrolase; Similar to Clostridium perfringens choloylglycine hydrolase SW:CBH_CLOPE (P54965) (329 aa) fasta scores: E(): 1.7e-06, 25.959% id in 339 aa, and to Rhizobium loti Mlr8141 protein TR:Q983W5 (EMBL:AP003013) (350 aa) fasta scores: E(): 7.4e-110, 80.059% id in 341 aa.


ensembl_gene_id: BP0475
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: BP0477
symbol: rluC
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: BP0478
symbol: BP0478
gene_biotype: protein_coding
description:
  Probable hydrolase; Similar to Erwinia chrysanthemi indigoidine systhesis protein IdgB TR:Q9KHB5 (EMBL:AF265211) (230 aa) fasta scores: E(): 4.8e-18, 40.777% id in 206 aa, and to Pseudomonas aeruginosa probable hydrolase Pa2974 TR:Q9HZN0 (EMBL:AE004723) (230 aa) fasta scores: E(): 2.1e-26, 44.340% id in 212 aa.


ensembl_gene_id: BP0479
symbol: msrP
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R [...]


ensembl_gene_id: BP0480
symbol: msrQ
gene_biotype: protein_coding
description:
  Putative membrane protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, usin [...]


ensembl_gene_id: BP0483
symbol: BP0483
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. Similar to Agrobacterium tumefaciens Agr_l_695p TR:AAK88921 (EMBL:AE008234) (577 aa) fasta scores: E(): 2e-74, 48.261% id in 460 aa.


ensembl_gene_id: BP0484
symbol: lldD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli L-lactate dehydrogenase LldD or LctD or B3605 SW:LLDD_ECOLI (P33232) (396 aa) fasta scores: E(): 3.5e-63, 46.825% id in 378 aa, and to Pseudomonas aeruginosa L-lactate dehydrogenase LldA or Pa2382 TR:Q9I197 (EMBL:AE004664) (383 aa) fasta scores: E(): 2.1e-118, 78.068% id in 383 aa.


ensembl_gene_id: BP0486
symbol: BP0486
gene_biotype: protein_coding
description:
  Probable acylphosphatase (Pseudogene); ~21 bp deletion in pertussis relative to parapertussis downstream of this codon.


ensembl_gene_id: BP0487
symbol: BP0487
gene_biotype: protein_coding
description:
  Probable amidase; Similar to Pseudomonas aeruginosa probable amidase Pa4342 TR:Q9HW59 (EMBL:AE004850) (494 aa) fasta scores: E(): 3.5e-67, 45.436% id in 482 aa, and to Rhizobium loti amidotransferase, subunit A Mlr3187 TR:Q98GT2 (EMBL:AP003001) (472 aa) fasta scores: E(): 1.8e-58, 41.226% id in 473 aa; Belongs to the amidase family.


ensembl_gene_id: BP0488
symbol: BP0488
gene_biotype: protein_coding
description:
  Transcriptional regulator; Similar to Pseudomonas putida pca regulon regulatory protein PcaR SW:PCAR_PSEPU (Q52154) (291 aa) fasta scores: E(): 1.8e-22, 31.250% id in 272 aa, and to Rhizobium meliloti putative transcriptional regulator, Iclr family protein Smb20586 TR:CAC49898 (EMBL:AL603647) (251 aa) fasta scores: E(): 1.8e-23, 33.471% id in 242 aa.


ensembl_gene_id: BP0489
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: BP0490
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase iii, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...]


ensembl_gene_id: BP0491
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.


ensembl_gene_id: BP0492
symbol: rpmH
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 50S ribosomal protein L34 RpmH or SsaF or RimA or B3703 or Z5194 or Ecs4638 SW:RL34_ECOLI (P02437) (46 aa) fasta scores: E(): 1e-10, 65.909% id in 44 aa, and to Neisseria meningitidis 50S ribosomal protein L34 RpmH or Nma0551 or nmb1904 SW:RL34_NEIMA (Q9JRA1) (44 aa) fasta scores: E(): 3.1e-14, 86.364% id in 44 aa; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: BP0493
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: BP0494
symbol: BP0494
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: BP0495
symbol: yidC
gene_biotype: protein_coding
description:
  Probable inner-membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: BP0498
symbol: acpD
gene_biotype: protein_coding
description:
  N-terminal region of acyl carrier protein phosphodiesterase (pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. The C-terminal region of this CDS is BP3054. Similar to the N-terminal regions of Escherichia coli acyl carrier protein phosphodiesterase AcpD SW:ACPD_ECOLI (P41407) (200 aa) fasta scores: E(): 4.3e-07, 40.476% id in 84 aa, and Pseudomonas aeruginosa hypothetical protein PA1962 TR:Q9I2E2 (EMBL:AE004622) (202 aa) fasta scores: E(): 4e-06, 45.570% id in 79 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0501
symbol: BP0501
gene_biotype: protein_coding
description:
  C-terminal region of two component sensor kinase (partial); Partial. This CDS is the C-terminal region of BP3351 which was disrupted by the integration of a prophage. Similar to Salmonella enterica TctE TR:Q9FA47 (EMBL:AF020810) (488 aa) fasta scores: E(): 1.5e-21, 30.079% id in 379 aa, and to Pseudomonas aeruginosa probable two-component sensor Pa0757 TR:Q9I5H2 (EMBL:AE004510) (460 aa) fasta scores: E(): 4.6e-24, 37.500% id in 376 aa.


ensembl_gene_id: BP0502
symbol: BP0502
gene_biotype: protein_coding
description:
  Integrase; Similar to Escherichia coli shufflon-specific DNA recombinase Rci SW:RCI1_ECOLI (P10487) (384 aa) fasta scores: E(): 7.5e-17, 30.796% id in 289 aa, and to Pasteurella multocida putative integrase/recombinase Rci TR:Q9L6A5 (EMBL:AF237934) (329 aa) fasta scores: E(): 2.4e-36, 37.651% id in 332 aa.


ensembl_gene_id: BP0503
symbol: BP0503
gene_biotype: protein_coding
description:
  Similar to Bacteriophage P4 hypothetical 9.7 kDa protein SW:Y9K_BPP4 (P12552) (88 aa) fasta scores: E(): 0.82, 30.357% id in 56 aa, and to Vibrio cholerae transcriptional regulator Vc0497 TR:Q9KUL8 (EMBL:AE004136) (66 aa) fasta scores: E(): 0.023, 28.571% id in 63 aa.


ensembl_gene_id: BP0505
symbol: BP0505
gene_biotype: protein_coding
description:
  Phage-related conserved hypothetical protein; Similar to Bacteriophage D3 Orf39 orf39 TR:Q9MC83 (EMBL:AF165214) (108 aa) fasta scores: E(): 0.018, 36.937% id in 111 aa, and to Mycobacteriophage TM4 Gp13 TR:Q9ZX64 (EMBL:AF068845) (139 aa) fasta scores: E(): 9.6, 32.609% id in 92 aa.


ensembl_gene_id: BP0507
symbol: BP0507
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to the internal region of Bordetella pertussis pertactin outer membrane protein PrnA TR:AAK92093 (EMBL:AF348485) (910 aa) fasta scores: E(): 2.5, 25.767% id in 163 aa, and to Bordetella pertussis pertactin Prn7 TR:Q9S6N1 (EMBL:AJ133784) (910 aa) fasta scores: E(): 3.4, 24.540% id in 163 aa.


ensembl_gene_id: BP0508
symbol: BP0508
gene_biotype: protein_coding
description:
  Similar to Escherichia coli O157:H7 exonuclease Ecs1174 TR:BAB34597 (EMBL:AP002554) (226 aa) fasta scores: E(): 2.4e-11, 30.918% id in 207 aa, and to Bacteriophage VT2-Sa exonuclease Exo TR:Q9T1N7 (EMBL:AP000363) (226 aa) fasta scores: E(): 2.8e-11, 30.918% id in 207 aa.


ensembl_gene_id: BP0509
symbol: BP0509
gene_biotype: protein_coding
description:
  Phage-related DNA recombination protein; Similar to Escherichia coli RecT protein RecT or B1349 SW:RECT_ECOLI (P33228) (269 aa) fasta scores: E(): 3.4e-09, 30.047% id in 213 aa, and to Escherichia coli O157:H7 recombinase RecT protein Ecs1933 TR:BAB35356 (EMBL:AP002556) (269 aa) fasta scores: E(): 1.3e-09, 30.516% id in 213 aa.


ensembl_gene_id: BP0518
symbol: BP0518
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Saccharomyces cerevisiae highdosage growth inhibitor Hig1 TR:BAB20815 (EMBL:AB050475) (129 aa) fasta scores: E(): 6.3e-10, 34.579% id in 107 aa, and to Halobacterium sp Vng2099C TR:Q9HNH7 (EMBL:AE005099) (127 aa) fasta scores: E(): 2e-10, 38.532% id in 109 aa.


ensembl_gene_id: BP0519
symbol: BP0519
gene_biotype: protein_coding
description:
  Probable glutathione S-transferase; Similar to Loligo opalescens S-crystallin TR:Q25368 (EMBL:U19300) (217 aa) fasta scores: E(): 3.2e-06, 24.537% id in 216 aa, and to Rhizobium meliloti probable glutathione S-transferase protein TR:CAC49678 (EMBL:AL603646) (240 aa) fasta scores: E(): 5.3e-42, 52.321% id in 237 aa.


ensembl_gene_id: BP0520
symbol: BP0520
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Escherichia coli HflC protein HflC or HflA or B4175 or Z5782 or Ecs5151 SW:HFLC_ECOLI (P25661) (334 aa) fasta scores: E(): 2.4e-06, 24.806% id in 258 aa, and to Thermotoga maritima FtsH protease activity modulator HflC Tm1823 TR:Q9X2E3 (EMBL:AE001819) (283 aa) fasta scores: E(): 4.3e-09, 26.210% id in 248 aa.


ensembl_gene_id: BP0521
symbol: BP0521
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical 12.0 kDa protein in baeR-ogrK intergenic region YegP or B2080 SW:YEGP_ECOLI (P76402) (110 aa) fasta scores: E(): 2.1e-17, 54.545% id in 110 aa, and to Pasteurella multocida hypothetical protein Pm0519 TR:Q9CNB3 (EMBL:AE006087) (114 aa) fasta scores: E(): 7.9e-14, 47.222% id in 108 aa; Belongs to the UPF0339 family. Duplicated subfamily.


ensembl_gene_id: BP0522
symbol: BP0522
gene_biotype: protein_coding
description:
  Similar to Arthrobacter sp metal-activated pyridoxal enzyme TR:O82872 (EMBL:AB010956) (379 aa) fasta scores: E(): 1.6e-16, 31.026% id in 390 aa, and to Agrobacterium tumefaciens Agr_l_1808p TR:AAK89478 (EMBL:AE008289) (397 aa) fasta scores: E(): 7.1e-74, 55.526% id in 380 aa.


ensembl_gene_id: BP0523
symbol: BP0523
gene_biotype: protein_coding
description:
  Probable haloacid dehalogenase; Similar to Pseudomonas putida 2-haloalkanoic acid dehalogenase H-109 DehH109 SW:HAD2_PSEPU (Q59728) (224 aa) fasta scores: E(): 1.5e-05, 28.241% id in 216 aa, and to Thermus thermophilus hypothetical 24.1 kDa protein YsaA TR:Q9F1Q2 (EMBL:AB048605) (218 aa) fasta scores: E(): 6.3e-07, 35.567% id in 194 aa.


ensembl_gene_id: BP0525
symbol: BP0525
gene_biotype: protein_coding
description:
  Probable transcriptional regulator (Pseudogene); (GGCGCGC)3 in pertussis; (GGCGCGC)2 in parapertussis and bronchiseptica.


ensembl_gene_id: BP0527
symbol: ecnA1
gene_biotype: protein_coding
description:
  Similar to Escherichia coli anti-toxin entericidin A precursor EcnA or B4147.1 SW:ECNA_ECOLI (P56548) (41 aa) fasta scores: E(): 0.86, 42.857% id in 42 aa, and to Rickettsia conorii hypothetical 6.7 kDa protein Rc1154 TR:AAL03692 (EMBL:AE008664) (64 aa) fasta scores: E(): 0.008, 46.512% id in 43 aa. Note in E. coli ecnA is located next to the bacteriolytic toxin ecnB. This is not the situation in B. pertusis. However, B. pertusis does possess an ecnB orthologue BP2531. B. pertusis also carries a second possible ecnA paralogue, BP2565.


ensembl_gene_id: BP0529
symbol: BP0529
gene_biotype: protein_coding
description:
  Autotransporter; Similar to Mycobacterium tuberculosis PgrS-family protein Rv3345c or Mtv004.01C or Mtv016.45C TR:O53395 (EMBL:AL021841) (1538 aa) fasta scores: E(): 5.8e-17, 26.329% id in 1618 aa, and to Salmonella typhimurium ShdA TR:Q9XCJ4 (EMBL:AF140550) (2035 aa) fasta scores: E(): 6.6e-16, 26.428% id in 2206 aa.


ensembl_gene_id: BP0530
symbol: BP0530
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Burkholderia cepacia ureidoglycolate hydrolase AllA TR:Q9AP01 (EMBL:AF317836) (177 aa) fasta scores: E(): 0.0025, 28.289% id in 152 aa, and to Rhodobacter capsulatus probable ureidoglycolate hydrolase SW:ALLA_RHOCA (O68109) (161 aa) fasta scores: E(): 0.0036, 32.558% id in 129 aa.


ensembl_gene_id: BP0531
symbol: BP0531
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 3.2e-27, 34.323% id in 303 aa, and to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 3.5e-28, 32.407% id in 324 aa.


ensembl_gene_id: BP0532
symbol: BP0532
gene_biotype: protein_coding
description:
  Putative substrate-CoA ligase; Similar to Mycobacterium tuberculosis CDC1551 substrate--CoA ligase Mt2580 TR:AAK46884 (EMBL:AE007094) (547 aa) fasta scores: E(): 2.8e-44, 32.422% id in 512 aa, and to Rhizobium meliloti putative fatty-acid-CoA ligase protein Smc00261 TR:CAC46268 (EMBL:AL591788) (549 aa) fasta scores: E(): 1.5e-41, 32.184% id in 522 aa.


ensembl_gene_id: BP0533
symbol: BP0533
gene_biotype: protein_coding
description:
  Probable transcriptional regulator; Similar to Pseudomonas putida efflux pump regulator SrpS TR:Q9R9U0 (EMBL:AF061937) (259 aa) fasta scores: E(): 4.8e-12, 33.471% id in 242 aa, and to Streptomyces coelicolor putative transcriptional regulator Stah10.11C TR:Q9RKU6 (EMBL:AL132824) (270 aa) fasta scores: E(): 1.6e-11, 33.065% id in 248 aa.


ensembl_gene_id: BP0534
symbol: BP0534
gene_biotype: protein_coding
description:
  Probable enoyl-CoA hydratase/isomerase; Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 SW:CRT_CLOAB (P52046) (261 aa) fasta scores: E(): 1.8e-17, 31.624% id in 234 aa, and to Sulfolobus solfataricus enoyl CoA hydratase Orf-C09_013 or Paaf-2 TR:Q9UX44 (EMBL:Y18930) (252 aa) fasta scores: E(): 2.7e-17, 29.279% id in 222 aa.


ensembl_gene_id: BP0535
symbol: BP0535
gene_biotype: protein_coding
description:
  Probable carboxymuconolactone decarboxylase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: BP0537
symbol: BP0537
gene_biotype: protein_coding
description:
  Putative exported protein (Pseudogene); ScanRegExp hit to PS00237, G-protein coupled receptors family 1 signature.


ensembl_gene_id: BP0538
symbol: BP0538
gene_biotype: protein_coding
description:
  Arginase; Similar to Bacillus caldovelox arginase RocF SW:ARGI_BACCD (P53608) (299 aa) fasta scores: E(): 3.5e-44, 44.000% id in 300 aa, and to Rhizobium loti arginase Mll6778 TR:Q988E1 (EMBL:AP003010) (310 aa) fasta scores: E(): 3.2e-44, 45.847% id in 301 aa; Belongs to the arginase family.


ensembl_gene_id: BP0541
symbol: BP0541
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1269 TR:Q9I475 (EMBL:AE004556) (222 aa) fasta scores: E(): 1.7e-28, 42.347% id in 196 aa, and to Rhizobium loti transcriptional regulator Mlr7144 TR:Q986Z8 (EMBL:AP003011) (253 aa) fasta scores: E(): 2.9e-20, 34.715% id in 193 aa.


ensembl_gene_id: BP0542
symbol: BP0542
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas chlororaphis hypothetical 35.8 kDa protein TR:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta scores: E(): 1.2e-36, 39.264% id in 326 aa, and to Pseudomonas sp hypothetical 35.9 kDa protein in tcbD-tcbE intergenic region precursor SW:YTCB_PSESQ (P27103) (336 aa) fasta scores: E(): 3.5e-36, 39.144% id in 327 aa.


ensembl_gene_id: BP0543
symbol: BP0543
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti probable oxidoreductase Mll7103 TR:Q987C9 (EMBL:AP003011) (427 aa) fasta scores: E(): 1.1e-46, 39.394% id in 396 aa, and to Pseudomonas aeruginosa probable oxidoreductase Pa1028 TR:Q9I4U6 (EMBL:AE004535) (428 aa) fasta scores: E(): 7e-40, 37.084% id in 391 aa.


ensembl_gene_id: BP0544
symbol: BP0544
gene_biotype: protein_coding
description:
  Similar to Streptococcus thermophilus putative 4-oxalocrotonate tautomerase subunit 4-OT TR:Q9EVV8 (EMBL:AJ251800) (61 aa) fasta scores: E(): 0.0013, 38.182% id in 55 aa, and to Sphingomonas chungbukensis 4-oxalocrotonate isomerase PhnL TR:Q9Z3X0 (EMBL:AF073359) (77 aa) fasta scores: E(): 0.0033, 36.508% id in 63 aa.


ensembl_gene_id: BP0545
symbol: rimO
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: BP0546
symbol: BP0546
gene_biotype: protein_coding
description:
  Bacterioferritin; Similar to Azotobacter vinelandii bacterioferritin Bfr SW:BFR_AZOVI (P22759) (156 aa) fasta scores: E(): 3.5e-05, 30.345% id in 145 aa, and to Pseudomonas aeruginosa probable bacterioferritin Pa4880 TR:Q9HUT3 (EMBL:AE004901) (177 aa) fasta scores: E(): 3.7e-41, 71.084% id in 166 aa.


ensembl_gene_id: BP0547
symbol: BP0547
gene_biotype: protein_coding
description:
  Similar to Eikenella corrodens lysine decarboxylase TR:Q9Z4R8 (EMBL:U89166) (183 aa) fasta scores: E(): 7.3e-25, 43.353% id in 173 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4923 SW:YDC3_PSEAE (P48636) (195 aa) fasta scores: E(): 8.9e-40, 53.684% id in 190 aa; Belongs to the LOG family.


ensembl_gene_id: BP0549
symbol: BP0549
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hydrolase, haloacid dehalogenase-like family cc1643 TR:Q9A7S7 (EMBL:AE005839) (246 aa) fasta scores: E(): 2.3e-26, 42.574% id in 202 aa, and to Agrobacterium radiobacter VirP protein TR:O52276 (EMBL:AF242881) (210 aa) fasta scores: E(): 1.4e-21, 36.318% id in 201 aa.


ensembl_gene_id: BP0550
symbol: BP0550
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hypothetical protein Cc2577 TR:Q9A580 (EMBL:AE005926) (204 aa) fasta scores: E(): 4.3e-46, 60.099% id in 203 aa, and to Rhizobium loti Mll0539 protein TR:Q98MK8 (EMBL:AP002995) (203 aa) fasta scores: E(): 9e-44, 58.000% id in 200 aa.


ensembl_gene_id: BP0551
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: BP0552
symbol: def
gene_biotype: protein_coding
description:
  Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: BP0553
symbol: kynU
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: BP0554
symbol: lrp
gene_biotype: protein_coding
description:
  Similar to Escherichia coli leucine-responsive regulatory protein Lrp or AlsB or LivR or Ihb or Oppi or b0889 SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E(): 4.8e-16, 38.667% id in 150 aa, and to Rhizobium meliloti leucine-responsive regulatory protein Lrp or R01568 or Smc01223 SW:LRP_RHIME (P56901) (156 aa) fasta scores: E(): 1.6e-18, 43.243% id in 148 aa.


ensembl_gene_id: BP0555
symbol: smf
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli Smf protein Smf or B3285/B3286 SW:SMF_ECOLI (P30852) (374 aa) fasta scores: E(): 1.5e-32, 43.974% id in 307 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0021 pa0021 TR:Q9I7A6 (EMBL:AE004441) (362 aa) fasta scores: E(): 5.2e-50, 51.639% id in 366 aa.


ensembl_gene_id: BP0556
symbol: hmgcL
gene_biotype: protein_coding
description:
  Similar to Gallus gallus hydroxymethylglutaryl-CoA lyase HmgcL SW:HMGL_CHICK (P35915) (298 aa) fasta scores: E(): 1.8e-60, 54.452% id in 292 aa, and to Pseudomonas aeruginosa hydroxymethylglutaryl-CoA lyase Pa2011 TR:Q9I2A0 (EMBL:AE004627) (300 aa) fasta scores: E(): 1.5e-63, 58.863% id in 299 aa. Also similar to BP3695, 42.657% identity in 286 aa overlap.


ensembl_gene_id: BP0558
symbol: BP0558
gene_biotype: protein_coding
description:
  Similar to Rhizobium leguminosarum general L-amino acid-binding periplasmic protein AapJ precursor SW:AAPJ_RHILV (Q52812) (341 aa) fasta scores: E(): 3.3e-75, 56.932% id in 339 aa, and to Vibrio cholerae amino acid ABC transporter, periplasmic amino acid-binding protein vc1362 TR:Q9KS97 (EMBL:AE004216) (342 aa) fasta scores: E(): 5.2e-79, 58.333% id in 336 aa; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: BP0559
symbol: BP0559
gene_biotype: protein_coding
description:
  Probable aminotransferase; Similar to Thermococcus profundus multiple substrate aminotransferase TR:Q9V2W5 (EMBL:AB027131) (417 aa) fasta scores: E(): 2.9e-42, 36.693% id in 387 aa, and to Streptomyces coelicolor putative aminotransferase Sce68.04C TR:Q9WX27 (EMBL:AL079345) (404 aa) fasta scores: E(): 8.4e-59, 48.429% id in 382 aa.


ensembl_gene_id: BP0561
symbol: BP0561
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); CAT in pertussis; C(-)T in parapertussis and bronchiseptica.


ensembl_gene_id: BP0562
symbol: BP0562
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium loti Mll3326 protein TR:Q98GH4 (EMBL:AP003001) (179 aa) fasta scores: E(): 6.4e-18, 41.830% id in 153 aa, and to Neisseria meningitidis hypothetical protein Nmb1557 TR:Q9JYJ5 (EMBL:AE002506) (157 aa) fasta scores: E(): 1e-15, 40.541% id in 148 aa.


ensembl_gene_id: BP0563
symbol: BP0563
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative LysR-family transcriptional regulator Sc5f8.17C TR:Q9K4K7 (EMBL:AL357613) (300 aa) fasta scores: E(): 2.8e-46, 46.644% id in 298 aa, and to Agrobacterium tumefaciens Agr_c_1691p TR:AAK86733 (EMBL:AE008023) (319 aa) fasta scores: E(): 5.4e-44, 43.434% id in 297 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0564
symbol: BP0564
gene_biotype: protein_coding
description:
  Probable transporter; Similar to Streptomyces coelicolor putative membrane transport protein Sc5f8.18 TR:Q9K4K6 (EMBL:AL357613) (204 aa) fasta scores: E(): 4.7e-24, 42.714% id in 199 aa, and to Pseudomonas aeruginosa probable transporter Pa4365 TR:Q9HW36 (EMBL:AE004852) (200 aa) fasta scores: E(): 2.7e-22, 41.500% id in 200 aa.


ensembl_gene_id: BP0566
symbol: BP0566
gene_biotype: protein_coding
description:
  Putative dioxygenase; Similar to Rhizobium meliloti hypothetical/unknown protein Smc01026 TR:CAC46020 (EMBL:AL591787) (296 aa) fasta scores: E(): 0.25, 27.090% id in 299 aa, and to Agrobacterium tumefaciens Agr_c_2627p TR:AAK87216 (EMBL:AE008068) (292 aa) fasta scores: E(): 0.21, 27.852% id in 298 aa.


ensembl_gene_id: BP0567
symbol: nadX1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.


ensembl_gene_id: BP0568
symbol: BP0568
gene_biotype: protein_coding
description:
  Putative amino acid efflux protein; Similar to Escherichia coli homoserine/homoserine lactone efflux protein RhtB or B3824 SW:RHTB_ECOLI (P27847) (206 aa) fasta scores: E(): 1.6e-14, 31.100% id in 209 aa, and to Rhizobium meliloti putative amino acid efflux transmembrane protein Smc02981 TR:CAC47452 (EMBL:AL591792) (211 aa) fasta scores: E(): 1.3e-40, 58.852% id in 209 aa.


ensembl_gene_id: BP0569
symbol: BP0569
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.


ensembl_gene_id: BP0570
symbol: BP0570
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Neisseria meningitidis hypothetical protein Nma0161 TR:Q9JWZ1 (EMBL:AL162752) (199 aa) fasta scores: E(): 3.5e-12, 31.088% id in 193 aa, and to Neisseria meningitidis hypothetical protein Nmb0113 TR:Q9K1K4 (EMBL:AE002370) (180 aa) fasta scores: E(): 5.1e-11, 32.278% id in 158 aa.


ensembl_gene_id: BP0571
symbol: BP0571
gene_biotype: protein_coding
description:
  Putative two-component sensor kinase; Similar to Azorhizobium caulinodans nitrogen regulation protein NtrY SW:NTRY_AZOCA (Q04850) (771 aa) fasta scores: E(): 8.8e-14, 29.107% id in 773 aa, and to Neisseria meningitidis nitrogen regulation protein NtrY, putative Nmb0114 TR:Q9K1K3 (EMBL:AE002370) (706 aa) fasta scores: E(): 6.2e-41, 37.748% id in 755 aa.


ensembl_gene_id: BP0572
symbol: BP0572
gene_biotype: protein_coding
description:
  Putative two-component response regulator; Similar to Salmonella typhimurium transcriptional regulatory protein HydG SW:HYDG_SALTY (P25852) (441 aa) fasta scores: E(): 7.1e-09, 35.849% id in 159 aa, and to Neisseria meningitidis putative two-component trancriptional regulator Nma0159 TR:Q9JWZ3 (EMBL:AL162752) (425 aa) fasta scores: E(): 1.2e-25, 53.939% id in 165 aa.


ensembl_gene_id: BP0573
symbol: trkA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli Trk system potassium uptake protein TrkA or B3290 or Z4660 or Ecs4155 SW:TRKA_ECOLI (P23868) (458 aa) fasta scores: E(): 6.9e-78, 48.478% id in 460 aa, and to Salmonella typhimurium Trk system potassium uptake protein TrkA or SapG SW:TRKA_SALTY (P39445) (458 aa) fasta scores: E(): 1.8e-78, 48.913% id in 460 aa.


ensembl_gene_id: BP0574
symbol: trkH
gene_biotype: protein_coding
description:
  Trk system potassium uptake protein; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.


ensembl_gene_id: BP0575
symbol: BP0575
gene_biotype: protein_coding
description:
  Similar to Escherichia coli transcriptional regulator protein SlyA TR:Q9F8R8 (EMBL:AF242208) (135 aa) fasta scores: E(): 2.1e-06, 29.630% id in 135 aa, and to Streptomyces coelicolor putative transcriptional regulator Sc4c6.14 TR:Q9XAM6 (EMBL:AL079355) (154 aa) fasta scores: E(): 8.9e-15, 40.000% id in 135 aa.


ensembl_gene_id: BP0576
symbol: BP0576
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa4618 TR:Q9HVH3 (EMBL:AE004876) (323 aa) fasta scores: E(): 7.3e-44, 42.271% id in 317 aa. Also similar to BP2128, 50.893% identity (53.271% ungapped) in 336 aa overlap.


ensembl_gene_id: BP0577
symbol: BP0577
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hypothetical protein Cc0019 TR:Q9AC47 (EMBL:AE005676) (210 aa) fasta scores: E(): 7e-13, 41.176% id in 204 aa, and to Agrobacterium tumefaciens Agr_pat_742p TR:AAK90876 (EMBL:AE007918) (230 aa) fasta scores: E(): 1.5e-09, 37.056% id in 197 aa.


ensembl_gene_id: BP0578
symbol: BP0578
gene_biotype: protein_coding
description:
  Similar to Synechocystis sp hypothetical 38.3 kDa protein Slr0619 TR:Q55861 (EMBL:D64004) (348 aa) fasta scores: E(): 1e-44, 47.569% id in 288 aa, and to Agrobacterium tumefaciens Agr_c_4595p TR:AAK88260 (EMBL:AE008165) (327 aa) fasta scores: E(): 3.2e-35, 45.260% id in 327 aa.


ensembl_gene_id: BP0579
symbol: maiA
gene_biotype: protein_coding
description:
  Maleate cis-trans isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.


ensembl_gene_id: BP0582
symbol: BP0582
gene_biotype: protein_coding
description:
  Putative isochorismatase; Similar to Arthrobacter sp N-carbamoylsarcosine amidase SW:CSH_ARTSP (P32400) (264 aa) fasta scores: E(): 2e-14, 32.673% id in 202 aa, and to Thermoplasma volcanium isochorismatase Tvg0787823 TR:Q97AM6 (EMBL:AP000993) (175 aa) fasta scores: E(): 6.1e-07, 28.409% id in 176 aa. Identical to BP1958, 100.000% identity (100.000% ungapped) in 205 aa overlap.


ensembl_gene_id: BP0583
symbol: BP0583
gene_biotype: protein_coding
description:
  Probable ring hydroxylating beta subunit; Similar to Pseudomonas sp salicylate-5-hydroxylase small oxygenase component NagH TR:O52380 (EMBL:AF036940) (161 aa) fasta scores: E(): 1.4e-17, 36.364% id in 154 aa, and to Burkholderia sp RasC ferredoxin oxidoreductase TR:Q9Z5Q7 (EMBL:U62430) (161 aa) fasta scores: E(): 8.8e-18, 36.364% id in 154 aa.


ensembl_gene_id: BP0584
symbol: BP0584
gene_biotype: protein_coding
description:
  Probable Ring hydroxylating alpha subunit; Similar to Pseudomonas sp salicylate-5-hydroxylase large oxygenase component NagG TR:O52379 (EMBL:AF036940) (423 aa) fasta scores: E(): 4.2e-80, 46.731% id in 413 aa, and to Pseudomonas aeruginosa O-halobenzoate dioxygenase alpha subunit OhbB TR:O87618 (EMBL:AF087482) (421 aa) fasta scores: E(): 2.5e-76, 46.229% id in 411 aa.


ensembl_gene_id: BP0585
symbol: BP0585
gene_biotype: protein_coding
description:
  Similar to Pseudomonas sp ferredoxin reductase BphA4 TR:Q52437 (EMBL:D16831) (408 aa) fasta scores: E(): 5.8e-45, 40.244% id in 410 aa, and to Rhizobium meliloti MocF TR:Q9R9P5 (EMBL:AF076471) (408 aa) fasta scores: E(): 2.2e-49, 43.826% id in 413 aa.


ensembl_gene_id: BP0586
symbol: BP0586
gene_biotype: protein_coding
description:
  Ferredoxin; Similar to Pseudomonas putida naphthalene 1,2-dioxygenase system ferredoxin component NdoA or NahaB or DoxA or NdoC1 SW:NDOA_PSEPU (P23082) (103 aa) fasta scores: E(): 1.4e-20, 55.882% id in 102 aa, and to Pseudomonas sp ferredoxin NagaB or PahaB TR:O52381 (EMBL:AF036940) (104 aa) fasta scores: E(): 1.9e-19, 49.505% id in 101 aa.


ensembl_gene_id: BP0589
symbol: BP0589
gene_biotype: protein_coding
description:
  Putative exported protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: BP0590
symbol: BP0590
gene_biotype: protein_coding
description:
  Oxidoreductase, large chain; Similar to Pseudomonas putida quinoline 2-oxidoreductase, large chain QorL TR:P72224 (EMBL:X98131) (788 aa) fasta scores: E(): 1.2e-91, 36.882% id in 789 aa, and to Mycobacterium tuberculosis CDC1551 carbon monoxide dehydrogenase, large subunit, putative Mt0388 TR:AAK44610 (EMBL:AE006943) (799 aa) fasta scores: E(): 3.4e-84, 36.181% id in 796 aa.


ensembl_gene_id: BP0591
symbol: BP0591
gene_biotype: protein_coding
description:
  Oxidoreductase, medium chain; Similar to Pseudomonas putida quinoline 2-oxidoreductase, medium chain QorM TR:P72222 (EMBL:X98131) (288 aa) fasta scores: E(): 4.4e-20, 38.182% id in 220 aa, and to Arthrobacter nicotinovorans nicotine dehydrogenase, medium chain NdhA TR:Q59127 (EMBL:X75338) (283 aa) fasta scores: E(): 4.5e-23, 36.015% id in 261 aa.


ensembl_gene_id: BP0592
symbol: BP0592
gene_biotype: protein_coding
description:
  Putative iron-sulfur binding protein; The N-terminal region of this CDS is similar to Pseudomonas putida quinoline 2-oxidoreductase, small chain QorS TR:P72223 (EMBL:X98131) (168 aa) fasta scores: E(): 2.3e-22, 47.260% id in 146 aa, and to Mycobacterium tuberculosis CDC1551 carbon monoxide dehydrogenase, small subunit, putative Mt0389 TR:AAK44611 (EMBL:AE006943) (159 aa) fasta scores: E(): 4.7e-22, 50.000% id in 146 aa.


ensembl_gene_id: BP0593
symbol: BP0593
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium loti Mlr6799 protein Mlr6799 TR:Q988C5 (EMBL:AP003010) (336 aa) fasta scores: E(): 1.4e-16, 27.879% id in 330 aa, and to Agrobacterium tumefaciens Agr_l_129gMp TR:AAK88849 (EMBL:AE008228) (329 aa) fasta scores: E(): 2.8e-16, 26.074% id in 326 aa.


ensembl_gene_id: BP0594
symbol: BP0594
gene_biotype: protein_coding
description:
  Probable ABC transporter, ATP-binding component; Similar to Arthrobacter keyseri transporter ATPase PtrA TR:Q9AGL2 (EMBL:AF331043) (275 aa) fasta scores: E(): 3.8e-32, 48.018% id in 227 aa, and to Agrobacterium tumefaciens Agr_l_1027gMp TR:AAK88847 (EMBL:AE008228) (269 aa) fasta scores: E(): 1.5e-36, 48.583% id in 247 aa.


ensembl_gene_id: BP0595
symbol: BP0595
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti ABC transporter, permease protein Mlr6798 TR:Q988C6 (EMBL:AP003010) (275 aa) fasta scores: E(): 9.2e-31, 39.592% id in 245 aa, and to Agrobacterium tumefaciens Agr_l_128gMp TR:AAK88848 (EMBL:AE008228) (267 aa) fasta scores: E(): 8e-32, 42.105% id in 228 aa.


ensembl_gene_id: BP0596
symbol: BP0596
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium loti Mll5171 protein Mll5171 TR:Q98CF5 (EMBL:AP003005) (194 aa) fasta scores: E(): 5.1e-34, 50.785% id in 191 aa, and to Agrobacterium tumefaciens Agr_pat_389p TR:AAK90645 (EMBL:AE007896) (222 aa) fasta scores: E(): 5.4e-38, 53.333% id in 180 aa. Almost identical to BP1488, 99.522% identity in 209 aa overlap.


ensembl_gene_id: BP0597
symbol: BP0597
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein Smc04249 TR:CAC46498 (EMBL:AL591788) (597 aa) fasta scores: E(): 4.8e-127, 61.922% id in 562 aa, and to Rhizobium loti Mll5170 protein TR:Q98CF6 (EMBL:AP003005) (589 aa) fasta scores: E(): 7.4e-122, 61.749% id in 549 aa.


ensembl_gene_id: BP0598
symbol: BP0598
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.


ensembl_gene_id: BP0599
symbol: bioC
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.


ensembl_gene_id: BP0600
symbol: BP0600
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Pseudomonas aeruginosa probable phosphoribosyl transferase Pa0489 TR:Q9I629 (EMBL:AE004486) (241 aa) fasta scores: E(): 2.9e-13, 39.109% id in 202 aa, and to Neisseria meningitidis hypothetical protein Nma2217 TR:Q9JSM9 (EMBL:AL162758) (241 aa) fasta scores: E(): 1.5e-12, 35.644% id in 202 aa.


ensembl_gene_id: BP0601
symbol: trmL
gene_biotype: protein_coding
description:
  rRNA methylase; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: BP0603
symbol: gpsA
gene_biotype: protein_coding
description:
  Putative exported protein (Pseudogene); (CT)2 in pertussis; (CT)1 in parapertussis and bronchiseptica; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: BP0604
symbol: secB
gene_biotype: protein_coding
description:
  Protein-export protein; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: BP0605
symbol: grxC
gene_biotype: protein_coding
description:
  Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: BP0606
symbol: BP0606
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa5130 TR:Q9HU54 (EMBL:AE004926) (139 aa) fasta scores: E(): 6.5e-09, 33.846% id in 130 aa, and to Xylella fastidiosa hypothetical protein Xf1800 TR:Q9PCH9 (EMBL:AE004001) (161 aa) fasta scores: E(): 2.8e-08, 30.935% id in 139 aa.


ensembl_gene_id: BP0607
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase 1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: BP0608
symbol: BP0608
gene_biotype: protein_coding
description:
  Putative peptidase; Similar to Pseudomonas aeruginosa hypothetical protein Pa5133 TR:Q9HU51 (EMBL:AE004926) (428 aa) fasta scores: E(): 4.3e-20, 33.665% id in 502 aa, and to Escherichia coli hypothetical 46.6 kDa protein in secB-tdh intergenic region YibP or B3613 SW:YIBP_ECOLI (P37690) (419 aa) fasta scores: E(): 1e-14, 31.218% id in 394 aa.


ensembl_gene_id: BP0609
symbol: ctpA
gene_biotype: protein_coding
description:
  Similar to Bartonella bacilliformis carboxy-terminal processing protease precursor CtpA SW:CTPA_BARBA (Q44879) (434 aa) fasta scores: E(): 8.3e-36, 44.545% id in 440 aa, and to Bartonella quintana carboxy-terminal protease CtpA TR:Q9ZF67 (EMBL:AF110497) (441 aa) fasta scores: E(): 1.5e-38, 44.622% id in 437 aa; Belongs to the peptidase S41A family.


ensembl_gene_id: BP0610
symbol: thiF
gene_biotype: protein_coding
description:
  Adenylyltransferase; Similar to Escherichia coli adenylyltransferase ThiF or B3992 SW:THIF_ECOLI (P30138) (251 aa) fasta scores: E(): 1.1e-41, 50.000% id in 252 aa, and to Pseudomonas aeruginosa molybdopterin biosynthesis MoeB protein or Pa4663 TR:Q9HVC9 (EMBL:AE004880) (252 aa) fasta scores: E(): 5.7e-48, 54.365% id in 252 aa.


ensembl_gene_id: BP0612
symbol: BP0612
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 6.5e-37, 36.196% id in 326 aa, and to Comamonas testosteroni Orf4 protein TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 3.9e-36, 35.831% id in 307 aa.


ensembl_gene_id: BP0613
symbol: BP0613
gene_biotype: protein_coding
description:
  Probable transcriptional regulator; Similar to Erwinia chrysanthemi pectin degradation repressor protein KdgR SW:KDGR_ERWCH (P37728) (305 aa) fasta scores: E(): 1.7e-11, 29.057% id in 265 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa2010 TR:Q9I2A1 (EMBL:AE004627) (267 aa) fasta scores: E(): 2.3e-26, 35.178% id in 253 aa. Also similar to BP3482 (47.244% identity in 254 aa overlap).


ensembl_gene_id: BP0616
symbol: BP0616
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Mycobacterium tuberculosis CDC1551 conserved hypothetical protein Mt3614 TR:AAK47972 (EMBL:AE007164) (278 aa) fasta scores: E(): 4.2e-15, 27.698% id in 278 aa, and to Agrobacterium tumefaciens Agr_c_2623p TR:AAK87214 (EMBL:AE008068) (291 aa) fasta scores: E(): 8.6e-11, 30.516% id in 213 aa.


ensembl_gene_id: BP0617
symbol: BP0617
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus transcriptional regulator, TetR family Cc0992 TR:Q9A9I8 (EMBL:AE005777) (210 aa) fasta scores: E(): 1.8e-13, 34.503% id in 171 aa, and to Rhodococcus spNCIMB 9784. transcriptional repressor CampR TR:AAK50621 (EMBL:AF323755) (206 aa) fasta scores: E(): 2.3e-11, 25.000% id in 184 aa.


ensembl_gene_id: BP0618
symbol: lpdA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli dihydrolipoamide dehydrogenase LpdA or Lpd or B0116 SW:DLDH_ECOLI (P00391) (473 aa) fasta scores: E(): 4.1e-94, 55.579% id in 466 aa, and to Salmonella enterica subspenterica serovar Typhimurium. dihydrolipoamide dehydrogenase Lpd TR:Q9ACP1 (EMBL:AJ297525) (475 aa) fasta scores: E(): 4.7e-94, 55.246% id in 467 aa.


ensembl_gene_id: BP0619
symbol: BP0619
gene_biotype: protein_coding
description:
  Similar to Thermotoga maritima branched chain amino acid ABC transporter, ATP-binding protein Tm1139 TR:Q9X0M3 (EMBL:AE001771) (239 aa) fasta scores: E(): 4.2e-29, 46.186% id in 236 aa, and to Deinococcus radiodurans branched-chain amino acid ABC transporter, ATP-binding protein Dr2118 TR:Q9RSK6 (EMBL:AE002047) (236 aa) fasta scores: E(): 8.1e-29, 43.644% id in 236 aa.


ensembl_gene_id: BP0620
symbol: BP0620
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG or B3455 or Z4825 or Ecs4302 SW:LIVG_ECOLI (P22730) (255 aa) fasta scores: E(): 2.2e-23, 36.905% id in 252 aa, and to Deinococcus radiodurans branched-chain amino acid ABC tranpsorter, ATP binding protein Dra0261 TR:Q9RYP8 (EMBL:AE001863) (587 aa) fasta scores: E(): 6.1e-44, 34.028% id in 576 aa; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: BP0621
symbol: BP0621
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 8.7e-22, 32.895% id in 304 aa, and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivH or LivA SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 2.1e-22, 32.895% id in 304 aa.


ensembl_gene_id: BP0622
symbol: BP0622
gene_biotype: protein_coding
description:
  Similar to Escherichia coli leu/ile/val-binding protein precursor LivJ or B3460 SW:LIVJ_ECOLI (P02917) (367 aa) fasta scores: E(): 5e-13, 28.428% id in 299 aa, and to Rhizobium meliloti probable leu/ile/val-binding protein TR:CAC45495 (EMBL:AL591785) (368 aa) fasta scores: E(): 6.4e-15, 32.861% id in 353 aa.


ensembl_gene_id: BP0624
symbol: BP0624
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); In-frame TAA stop codon in pertussis; CAA in bronchiseptica.


ensembl_gene_id: BP0625
symbol: BP0625
gene_biotype: protein_coding
description:
  Probable acyl-CoA dehydrogenase; Similar to Pseudomonas putida FadfX TR:Q9AHX9 (EMBL:AF290950) (375 aa) fasta scores: E(): 8.8e-34, 33.425% id in 362 aa, and to Archaeoglobus fulgidus acyl-CoA dehydrogenase Af0964 TR:O29298 (EMBL:AE001038) (394 aa) fasta scores: E(): 5.4e-66, 44.810% id in 395 aa.


ensembl_gene_id: BP0627
symbol: BP0627
gene_biotype: protein_coding
description:
  ScanRegExp hit to PS00189, 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. Confirmed by InterPro eMOTIF pattern match.


ensembl_gene_id: BP0628
symbol: BP0628
gene_biotype: protein_coding
description:
  Similar to Zea mays pyruvate dehydrogenase E1 beta subunit isoform 2 Pdh2 TR:Q9ZQY2 (EMBL:AF069909) (374 aa) fasta scores: E(): 4.3e-56, 47.077% id in 325 aa, and to Rhizobium loti acetoin dehydrogenase Mll3628 TR:Q98FT4 (EMBL:AP003002) (332 aa) fasta scores: E(): 3.5e-60, 51.713% id in 321 aa.


ensembl_gene_id: BP0629
symbol: pdhA
gene_biotype: protein_coding
description:
  Putative pyruvate dehydrogenase E1 component, alpha subunit; Similar to Clostridium magnum TPP-dependent acetoin dehydrogenase alpha-subunit TR:Q46142 (EMBL:L31844) (326 aa) fasta scores: E(): 8.2e-48, 43.631% id in 314 aa, and to Pseudomonas aeruginosa probable dehydrogenase e1 component Pa4150 TR:Q9HWN1 (EMBL:AE004831) (324 aa) fasta scores: E(): 3.1e-48, 45.541% id in 314 aa.


ensembl_gene_id: BP0630
symbol: BP0630
gene_biotype: protein_coding
description:
  Probable transcriptional regulator; Similar to Escherichia coli negative regulator of allantoin and glyoxylate utilization operons AllR or GlxA3 or B0506 or Z0660 or Ecs0567 SW:ALLR_ECOLI (P77734) (271 aa) fasta scores: E(): 1.7e-10, 27.237% id in 257 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa1015 TR:Q9I4V8 (EMBL:AE004534) (266 aa) fasta scores: E(): 4.6e-31, 39.184% id in 245 aa.


ensembl_gene_id: BP0633
symbol: BP0633
gene_biotype: protein_coding
description:
  C-terminus truncated putative pimeloyl-CoA synthetase (Pseudogene); HMMPfam hit to PF02629, CoA binding domain.


ensembl_gene_id: BP0634
symbol: BP0634
gene_biotype: protein_coding
description:
  Similar to Bacillus subtilis acyl-CoA dehydrogenase AcdA or Acd SW:ACDA_BACSU (P45867) (379 aa) fasta scores: E(): 1.1e-49, 40.849% id in 377 aa, and to Bacillus halodurans acyl-CoA dehydrogenase AcdA or Bh3798 TR:Q9K6D1 (EMBL:AP001520) (380 aa) fasta scores: E(): 5.8e-53, 41.270% id in 378 aa.


ensembl_gene_id: BP0635
symbol: BP0635
gene_biotype: protein_coding
description:
  Similar to Escherichia coli probable enoyl-CoA hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) fasta scores: E(): 5.2e-25, 33.846% id in 260 aa, and to Rhizobium meliloti putative enoyl-CoA hydratase protein TR:CAC49952 (EMBL:AL603647) (263 aa) fasta scores: E(): 8.5e-28, 39.147% id in 258 aa; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: BP0636
symbol: BP0636
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhodococcus spNCIMB 9784 non-specific lipid carrier-like protein CampC TR:AAK50624 (EMBL:AF323755) (408 aa) fasta scores: E(): 8.1e-37, 35.106% id in 376 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 2.1e-46, 41.425% id in 379 aa.


ensembl_gene_id: BP0637
symbol: BP0637
gene_biotype: protein_coding
description:
  Similar to Thermoplasma volcanium hypothetical protein Tvg0142586 TR:Q97CG7 (EMBL:AP000991) (135 aa) fasta scores: E(): 1.1e-07, 36.522% id in 115 aa, and to Archaeoglobus fulgidus conserved hypothetical protein Af0284 TR:O29957 (EMBL:AE001085) (165 aa) fasta scores: E(): 2.2e-06, 29.091% id in 110 aa.


ensembl_gene_id: BP0639
symbol: BP0639
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Archaeoglobus fulgidus monoamine oxidase regulatory protein, putative Af0198 TR:O30041 (EMBL:AE001092) (146 aa) fasta scores: E(): 6.9e-07, 44.444% id in 90 aa, and to Archaeoglobus fulgidus conserved hypothetical protein Af1124 TR:O29141 (EMBL:AE001026) (159 aa) fasta scores: E(): 1.6e-06, 28.182% id in 110 aa.


ensembl_gene_id: BP0640
symbol: BP0640
gene_biotype: protein_coding
description:
  Probable acyl-CoA dehydrogenase; Similar to Pseudomonas putida FadfX TR:Q9AHX9 (EMBL:AF290950) (375 aa) fasta scores: E(): 3.6e-38, 33.858% id in 381 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa2889 TR:Q9HZV8 (EMBL:AE004715) (386 aa) fasta scores: E(): 6.2e-86, 55.584% id in 385 aa.


ensembl_gene_id: BP0641
symbol: BP0641
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.5e-40, 40.000% id in 315 aa, and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 4.7e-39, 40.312% id in 320 aa.


ensembl_gene_id: BP0642
symbol: BP0642
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa3592 TR:Q9HY34 (EMBL:AE004779) (395 aa) fasta scores: E(): 1.9e-30, 35.567% id in 388 aa, and to Rhodococcus erythropolis putative dehydratase/racemase TR:Q9AH11 (EMBL:AF323606) (400 aa) fasta scores: E(): 8.9e-30, 32.626% id in 377 aa; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP0643
symbol: BP0643
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Escherichia coli transcriptional activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 1.9e-27, 34.843% id in 287 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa5085 TR:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores: E(): 1e-25, 35.395% id in 291 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0644
symbol: BP0644
gene_biotype: protein_coding
description:
  Similar to Thermotoga maritima dihydrodipicolinate synthase DapA or Tm1521 SW:DAPA_THEMA (Q9X1K9) (294 aa) fasta scores: E(): 8.1e-16, 28.400% id in 250 aa, and to Agrobacterium tumefaciens Agr_pat_671p TR:AAK90832 (EMBL:AE007915) (302 aa) fasta scores: E(): 6.3e-20, 32.056% id in 287 aa.


ensembl_gene_id: BP0647
symbol: BP0647
gene_biotype: protein_coding
description:
  Similar to Pyrococcus abyssi hypothetical 13.6 kDa protein Pab1062 TR:Q9UY93 (EMBL:AJ248288) (130 aa) fasta scores: E(): 4e-09, 30.328% id in 122 aa, and to Pyrococcus horikoshii hypothetical 14.0 kDa protein Ph0353 SW:Y353_PYRHO (O58091) (134 aa) fasta scores: E(): 2.1e-08, 31.405% id in 121 aa.


ensembl_gene_id: BP0650
symbol: BP0650
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Azospirillum brasilense galactose-binding protein regulator GbpR SW:GBPR_AZOBR (P52661) (342 aa) fasta scores: E(): 1.7e-23, 31.683% id in 303 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa2206 TR:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: E(): 4.2e-28, 32.468% id in 308 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0651
symbol: dld
gene_biotype: protein_coding
description:
  D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.


ensembl_gene_id: BP0652
symbol: BP0652
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus acyl-CoA dehydrogenase family protein Cc1311 TR:Q9A8P2 (EMBL:AE005806) (401 aa) fasta scores: E(): 2.8e-46, 40.476% id in 378 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa0746 TR:Q9I5I3 (EMBL:AE004509) (387 aa) fasta scores: E(): 3.9e-26, 31.622% id in 370 aa.


ensembl_gene_id: BP0653
symbol: BP0653
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus acyl-CoA dehydrogenase family protein Cc1310 TR:Q9A8P3 (EMBL:AE005806) (404 aa) fasta scores: E(): 2e-81, 50.495% id in 404 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa1022 TR:Q9I4V2 (EMBL:AE004534) (381 aa) fasta scores: E(): 2e-46, 41.582% id in 392 aa.


ensembl_gene_id: BP0654
symbol: BP0654
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.4e-36, 37.690% id in 329 aa, and to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.1e-35, 36.677% id in 319 aa.


ensembl_gene_id: BP0655
symbol: BP0655
gene_biotype: protein_coding
description:
  Similar to Escherichia coli acetylornithine deacetylase ArgE or B3957 SW:ARGE_ECOLI (P23908) (383 aa) fasta scores: E(): 4.8e-26, 32.454% id in 379 aa, and to Pseudomonas aeruginosa probable peptidic bond hydrolase Pa5390 TR:Q9HTH4 (EMBL:AE004951) (384 aa) fasta scores: E(): 4e-107, 70.449% id in 379 aa. Also similar to BP3588 (50.134% identity in 373 aa overlap).


ensembl_gene_id: BP0656
symbol: BP0656
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa5391 TR:Q9HTH3 (EMBL:AE004951) (224 aa) fasta scores: E(): 1.9e-54, 68.304% id in 224 aa, and to Aeropyrum pernix hypothetical 32.5 kDa protein Ape1388 TR:Q9YC63 (EMBL:AP000061) (301 aa) fasta scores: E(): 2.2e-18, 42.771% id in 166 aa.


ensembl_gene_id: BP0657
symbol: BP0657
gene_biotype: protein_coding
description:
  Putative endoribonuclease; Similar to Pseudomonas aeruginosa hypothetical protein Pa5392 TR:Q9HTH2 (EMBL:AE004951) (140 aa) fasta scores: E(): 5.7e-50, 92.086% id in 139 aa, and to Rhizobium meliloti hypothetical 14.1 kDa protein Sma2289 TR:AAK65890 (EMBL:AE007308) (130 aa) fasta scores: E(): 2.3e-07, 33.333% id in 123 aa.


ensembl_gene_id: BP0658
symbol: BP0658
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa5393 TR:Q9HTH1 (EMBL:AE004951) (450 aa) fasta scores: E(): 2.8e-129, 75.962% id in 416 aa, and to Synechocystis sp hypothetical 46.6 kDa protein Slr0801 TR:Q55951 (EMBL:D64005) (416 aa) fasta scores: E(): 1.8e-54, 40.594% id in 404 aa.


ensembl_gene_id: BP0659
symbol: BP0659
gene_biotype: protein_coding
description:
  Probable zinc-binding dehydrogenase; Similar to Escherichia coli protein YhdH or B3253 SW:YHDH_ECOLI (P26646) (324 aa) fasta scores: E(): 3.9e-65, 57.500% id in 320 aa, and to Rhizobium loti dehydrogenase, zinc-binding alcohol dehydrogenase, NADPH quinone oxidoreductase, oxidoreductase Mlr3212 TR:Q98GR0 (EMBL:AP003001) (329 aa) fasta scores: E(): 8.3e-71, 59.752% id in 323 aa.


ensembl_gene_id: BP0660
symbol: BP0660
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa0218 TR:Q9I6S0 (EMBL:AE004459) (306 aa) fasta scores: E(): 9.4e-28, 32.886% id in 298 aa, and to Rhizobium loti transcriptional regulator Mll7443 TR:Q986A7 (EMBL:AP003011) (303 aa) fasta scores: E(): 2.3e-21, 29.097% id in 299 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0661
symbol: BP0661
gene_biotype: protein_coding
description:
  Similar to Entamoeba histolytica acetyl-CoA synthetase TR:Q9NAT4 (EMBL:AF286346) (713 aa) fasta scores: E(): 7.1e-57, 32.460% id in 687 aa, and to Pseudomonas aeruginosa pimeloyl-CoA synthetase pa1017 TR:Q9I4V6 (EMBL:AE004534) (715 aa) fasta scores: E(): 5.4e-63, 32.345% id in 708 aa.


ensembl_gene_id: BP0662
symbol: BP0662
gene_biotype: protein_coding
description:
  Probable enoyl-CoA hydratase; Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 SW:CRT_CLOAB (P52046) (261 aa) fasta scores: E(): 8.8e-24, 33.725% id in 255 aa, and to Halobacterium sp enoyl-CoA hydratase Fad2 or Vng0428G TR:Q9HS32 (EMBL:AE004998) (256 aa) fasta scores: E(): 8.7e-24, 35.878% id in 262 aa.


ensembl_gene_id: BP0663
symbol: BP0663
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Streptomyces coelicolor putative lipoprotein Scbac1a6.20C TR:Q9ADG7 (EMBL:AL589708) (367 aa) fasta scores: E(): 0.0011, 26.549% id in 226 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3449 TR:Q9HYF7 (EMBL:AE004765) (333 aa) fasta scores: E(): 0.006, 24.473% id in 237 aa.


ensembl_gene_id: BP0664
symbol: BP0664
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.9e-44, 39.752% id in 322 aa, and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 1.4e-44, 40.426% id in 329 aa.


ensembl_gene_id: BP0665
symbol: BP0665
gene_biotype: protein_coding
description:
  Similar to Saccharopolyspora erythraea thymidine diphosphoglucose 4,6-dehydratase Gdh TR:Q54116 (EMBL:L37354) (329 aa) fasta scores: E(): 2.7e-13, 26.524% id in 328 aa, and to Streptomyces tenebrarius AprE TR:Q9F5R6 (EMBL:AF306787) (332 aa) fasta scores: E(): 3.6e-13, 29.429% id in 333 aa.


ensembl_gene_id: BP0666
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: BP0667
symbol: BP0667
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical transcriptional regulator YbaO or B0447 SW:YBAO_ECOLI (P54986) (152 aa) fasta scores: E(): 2.4e-13, 33.333% id in 150 aa, and to Haemophilus influenzae hypothetical transcriptional regulator Hi0224 SW:Y224_HAEIN (P44580) (168 aa) fasta scores: E(): 1.6e-17, 37.162% id in 148 aa.


ensembl_gene_id: BP0668
symbol: BP0668
gene_biotype: protein_coding
description:
  Probable thiolase; Similar to Cucurbita maxima 3-ketoacyl-CoA thiolase precursor TR:P93112 (EMBL:D70895) (461 aa) fasta scores: E(): 1.1e-50, 42.569% id in 397 aa, and to Deinococcus radiodurans acetyl-CoA acetyltransferase Dr1428 TR:Q9RUF8 (EMBL:AE001987) (402 aa) fasta scores: E(): 4.6e-94, 65.140% id in 393 aa; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: BP0669
symbol: BP0669
gene_biotype: protein_coding
description:
  Probable enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase, bifunctional enzyme; Similar to Cavia porcellus peroxisomal bifunctional enzyme EhhadH SW:ECHP_CAVPO (P55100) (725 aa) fasta scores: E(): 1.9e-65, 41.018% id in 707 aa, and to Rhizobium loti enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase Nll4199 TR:Q98EK7 (EMBL:AP003003) (689 aa) fasta scores: E(): 6.5e-103, 46.802% id in 688 aa.


ensembl_gene_id: BP0670
symbol: BP0670
gene_biotype: protein_coding
description:
  Probable acyl-CoA dehydrogenase; Similar to Escherichia coli AidB protein B4187 SW:AIDB_ECOLI (P33224) (541 aa) fasta scores: E(): 1.4e-32, 30.983% id in 468 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa3593 TR:Q9HY33 (EMBL:AE004779) (575 aa) fasta scores: E(): 7.1e-91, 47.120% id in 573 aa.


ensembl_gene_id: BP0671
symbol: BP0671
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 1.3e-29, 32.288% id in 319 aa, and to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 7.6e-31, 32.110% id in 327 aa.


ensembl_gene_id: BP0672
symbol: BP0672
gene_biotype: protein_coding
description:
  acetyl-CoA synthetase; Similar to Pseudomonas mendocina pimeloyl-CoA synthetase TR:Q9ZER2 (EMBL:AJ012480) (711 aa) fasta scores: E(): 2.2e-99, 40.979% id in 715 aa, and to Entamoeba histolytica acetyl-CoA synthetase TR:Q9NAT4 (EMBL:AF286346) (713 aa) fasta scores: E(): 1.1e-55, 31.549% id in 710 aa.


ensembl_gene_id: BP0673
symbol: BP0673
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Chlorobium limicola ATP-citrate lyase alpha-subunit AclA TR:Q9AJC4 (EMBL:AB054670) (608 aa) fasta scores: E(): 0.0026, 21.961% id in 255 aa, and to Methanothermobacter thermautotrophicus citrate synthase I Mth962 TR:O27043 (EMBL:AE000870) (280 aa) fasta scores: E(): 1.4e-15, 31.727% id in 249 aa.


ensembl_gene_id: BP0674
symbol: BP0674
gene_biotype: protein_coding
description:
  Probable transcriptional regulator; Similar to Salmonella typhimurium acetate operon repressor IclR SW:ICLR_SALTY (P17430) (274 aa) fasta scores: E(): 9.3e-08, 25.410% id in 244 aa, and to Caulobacter crescentus transcriptional regulator, putative Cc1811 TR:Q9A7B3 (EMBL:AE005855) (257 aa) fasta scores: E(): 3.5e-17, 29.555% id in 247 aa.


ensembl_gene_id: BP0675
symbol: BP0675
gene_biotype: protein_coding
description:
  Probable molybdopterin oxidoreductase; Similar to Rhodobacter sphaeroides biotin sulfoxide reductase SW:BISC_RHOSH (P54934) (744 aa) fasta scores: E(): 9.8e-113, 42.457% id in 749 aa, and to Mycobacterium tuberculosis CDC1551 molybdopterin oxidoreductase Mt1487 TR:AAK45750 (EMBL:AE007018) (766 aa) fasta scores: E(): 6.1e-146, 49.547% id in 773 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: BP0677
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: BP0678
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: BP0679
symbol: hemK
gene_biotype: protein_coding
description:
  Heme biosynthesis protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: BP0680
symbol: BP0680
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein Nma0984 or Nmb0773 TR:Q9JR73 (EMBL:AL162754) (103 aa) fasta scores: E(): 2.8e-24, 66.337% id in 101 aa, and to Rhizobium meliloti conserved hypothetical protein Smc00538 TR:CAC46360 (EMBL:AL591788) (111 aa) fasta scores: E(): 9.6e-21, 57.009% id in 107 aa; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: BP0681
symbol: ubiX
gene_biotype: protein_coding
description:
  Probable flavoprotein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: BP0682
symbol: BP0682
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 1.4e-38, 36.577% id in 298 aa, and to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.3e-42, 38.769% id in 325 aa.


ensembl_gene_id: BP0683
symbol: BP0683
gene_biotype: protein_coding
description:
  Similar to Burkholderia cepacia 4,5-dihydroxyphthalate decarboxylase OphC TR:Q9ZFR0 (EMBL:AF095748) (330 aa) fasta scores: E(): 6.3e-68, 49.848% id in 329 aa, and to Comamonas testosteroni 4,5-dihydroxyphthalate decarboxylase PhtD SW:PHTD_COMTE (Q59727) (330 aa) fasta scores: E(): 3.6e-65, 48.632% id in 329 aa.


ensembl_gene_id: BP0684A
symbol: BP0684A
gene_biotype: protein_coding
description:
  Molybdopterin dehydrogenase (Pseudogene); (T)3 in pertussis; (T)2 in parapertussis and bronchiseptica.


ensembl_gene_id: BP0685
symbol: BP0685
gene_biotype: protein_coding
description:
  Probable dehydrogenase/oxidase; Similar to Pseudomonas putida quinoline 2-oxidoreductase, large chain QorL TR:P72224 (EMBL:X98131) (788 aa) fasta scores: E(): 7.5e-52, 36.189% id in 782 aa, and to Arthrobacter nicotinovorans ketone dehydrogenase large subunit KdhL TR:CAC37487 (EMBL:AJ306904) (794 aa) fasta scores: E(): 9.9e-82, 35.379% id in 766 aa.


ensembl_gene_id: BP0688
symbol: BP0688
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); In-frame TAG stop codon in pertussis; CAG in parapertussis and bronchiseptica.


ensembl_gene_id: BP0689
symbol: rlpA
gene_biotype: protein_coding
description:
  Putative lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: BP0693
symbol: hprK
gene_biotype: protein_coding
description:
  Hpr serine kinase/phosphatase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).


ensembl_gene_id: BP0694
symbol: rpoP
gene_biotype: protein_coding
description:
  Similar to Escherichia coli nitrogen regulatory IIA protein PtsN or RpoP or B3204 SW:PTSN_ECOLI (P31222) (163 aa) fasta scores: E(): 6.2e-13, 40.000% id in 120 aa, and to Alcaligenes eutrophus hypothetical 16.5 kDa protein TR:Q9EX66 (EMBL:AJ131690) (151 aa) fasta scores: E(): 1.6e-37, 65.986% id in 147 aa.


ensembl_gene_id: BP0697
symbol: rpoN-2
gene_biotype: protein_coding
description:
  Probable sigma(54) modulation protein (Pseudogene); (CA)2 in pertussis; (CA)1 deleted in parapertussis and bronchiseptica.


ensembl_gene_id: BP0698
symbol: lptA
gene_biotype: protein_coding
description:
  Putative exported protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.


ensembl_gene_id: BP0699
symbol: BP0699
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Neisseria meningitidis putative periplasmic hypothetical protein Nma2133 TR:Q9JSU4 (EMBL:AL162758) (193 aa) fasta scores: E(): 0.00062, 23.711% id in 194 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4459 TR:Q9HVV8 (EMBL:AE004860) (190 aa) fasta scores: E(): 0.04, 22.989% id in 174 aa.


ensembl_gene_id: BP0700
symbol: BP0700
gene_biotype: protein_coding
description:
  Probable hydrolase; Similar to Neisseria meningitidis hypothetical protein Nma2134 TR:Q9JSU3 (EMBL:AL162758) (178 aa) fasta scores: E(): 3.7e-25, 44.706% id in 170 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4458 TR:Q9HVV9 (EMBL:AE004860) (179 aa) fasta scores: E(): 4.9e-25, 48.428% id in 159 aa.


ensembl_gene_id: BP0701
symbol: BP0701
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli GutQ protein GutQ or SrlQ or B2708 SW:GUTQ_ECOLI (P17115) (321 aa) fasta scores: E(): 2e-49, 48.438% id in 320 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4457 TR:Q9HVW0 (EMBL:AE004860) (326 aa) fasta scores: E(): 6.5e-60, 56.190% id in 315 aa; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: BP0702
symbol: purT
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.


ensembl_gene_id: BP0704
symbol: BP0704
gene_biotype: protein_coding
description:
  N-terminal region of TonB dependent receptor protein (Pseudogene); Inverted repeat for IS481 element.


ensembl_gene_id: BP0706
symbol: BP0706
gene_biotype: protein_coding
description:
  Putative C-terminal region of dehydrogenase (Pseudogene); HMMPfam hit to PF00732, GMC oxidoreductase.


ensembl_gene_id: BP0707
symbol: BP0707
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Streptomyces coelicolor hypothetical 10.8 kDa protein Sce22.04 TR:Q9KYV8 (EMBL:AL355832) (110 aa) fasta scores: E(): 2.8e-07, 34.653% id in 101 aa, and to Mycobacterium leprae hypothetical ser-rich C-terminus protein Ml0180 TR:Q9CD66 (EMBL:AL583917) (99 aa) fasta scores: E(): 9.8e-05, 32.673% id in 101 aa.


ensembl_gene_id: BP0708
symbol: BP0708
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis putative integral membrane protein Nma2020 TR:Q9JT22 (EMBL:AL162757) (245 aa) fasta scores: E(): 1.3e-33, 47.143% id in 210 aa, and to Rhizobium meliloti hypothetical transmembrane protein Smc00229 TR:CAC46233 (EMBL:AL591788) (230 aa) fasta scores: E(): 3.8e-26, 41.627% id in 209 aa.


ensembl_gene_id: BP0709
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: BP0710
symbol: BP0710
gene_biotype: protein_coding
description:
  Putative endonuclease/exonuclease/phosphatase family protein; Similar to Escherichia coli hypothetical protein YbhP or B0790 or Z1009 or Ecs0868 SW:YBHP_ECOLI (P75772) (253 aa) fasta scores: E(): 2.3e-20, 36.426% id in 291 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2156 TR:Q9I1V9 (EMBL:AE004642) (245 aa) fasta scores: E(): 4.6e-20, 37.457% id in 291 aa. Also similar to BP1340, 37.801% identity (46.610% ungapped) in 291 aa overlap.


ensembl_gene_id: BP0711
symbol: clsB
gene_biotype: protein_coding
description:
  Putative phospholipase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: BP0712
symbol: BP0712
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Vibrio cholerae hypothetical protein Vca0090 TR:Q9KN75 (EMBL:AE004352) (297 aa) fasta scores: E(): 9.3e-45, 47.887% id in 284 aa, and to Rhizobium loti Mlr1585 protein TR:Q98K88 (EMBL:AP002997) (305 aa) fasta scores: E(): 4.8e-22, 34.343% id in 297 aa.


ensembl_gene_id: BP0720
symbol: BP0720
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Thermoplasma volcanium Tvg1306680 protein TR:Q978Z7 (EMBL:AP000996) (64 aa) fasta scores: E(): 7.1, 33.333% id in 48 aa, and to Agrobacterium tumefaciens Agr_c_4413p TR:AAK88168 (EMBL:AE008157) (121 aa) fasta scores: E(): 1.3e-13, 59.375% id in 64 aa.


ensembl_gene_id: BP0721
symbol: BP0721
gene_biotype: protein_coding
description:
  Probable aminotransferase; Similar to Bilophila wadsworthia taurine:pyruvate aminotransferase TR:Q9APM5 (EMBL:AF269146) (456 aa) fasta scores: E(): 9.3e-99, 54.000% id in 450 aa, and to Bacillus subtilis probable aminotransferase YhxA SW:YHXA_BACSU (P33189) (450 aa) fasta scores: E(): 7.4e-62, 37.418% id in 457 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: BP0722
symbol: BP0722
gene_biotype: protein_coding
description:
  Probable amidase; Similar to Bradyrhizobium japonicum indoleacetamide hydrolase Bam SW:HYIN_BRAJA (P19922) (465 aa) fasta scores: E(): 2.6e-45, 39.409% id in 406 aa, and to Streptomyces spR1128 enantiomer selective amidase ZhuL TR:Q9F6D0 (EMBL:AF293442) (507 aa) fasta scores: E(): 3.5e-27, 33.407% id in 452 aa; Belongs to the amidase family.


ensembl_gene_id: BP0723
symbol: BP0723
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti probable ABC transporter, ATP-binding protein Sma1434 TR:AAK65441 (EMBL:AE007265) (550 aa) fasta scores: E(): 1e-76, 46.125% id in 542 aa, and to Agrobacterium tumefaciens Agr_l_3504p TR:AAK90329 (EMBL:AE008378) (575 aa) fasta scores: E(): 7.1e-84, 48.780% id in 533 aa.


ensembl_gene_id: BP0724
symbol: BP0724
gene_biotype: protein_coding
description:
  Similar to Rhizobium sp probable peptide ABC transporter permease protein Y4tQ SW:Y4TQ_RHISN (Q53192) (291 aa) fasta scores: E(): 1.4e-52, 53.307% id in 257 aa, and to Rhizobium loti ABC transporter, permease protein mlr6290 TR:Q989T2 (EMBL:AP003008) (280 aa) fasta scores: E(): 5.7e-46, 47.547% id in 265 aa. Also similar to several B. pertussis CDSs such as BP3161 (57.348% identity in 279 aa overlap), BP1825 (57.977% identity in 257 aa overlap), BP3459 (55.725% identity in 262 aa overlap), P2592 (40.304% identity in 263 aa overlap).


ensembl_gene_id: BP0725
symbol: BP0725
gene_biotype: protein_coding
description:
  Similar to Rhizobium sp probable peptide ABC transporter permease protein Y4tP SW:Y4TP_RHISN (Q53191) (313 aa) fasta scores: E(): 3.2e-65, 54.839% id in 310 aa, and to Rhizobium loti ABC transporter, permease protein Mlr6289 TR:Q989T3 (EMBL:AP003008) (314 aa) fasta scores: E(): 5e-52, 47.284% id in 313 aa. Also similar to several B. pertussis CDSs such as BP3160 (58.147% identity in 313 aa overlap), BP3458 (54.633% identity in 313 aa overlap), BP1824 (53.922% identity in 306 aa overlap), BP2395 (44.268% identity in 314 aa overlap), and BP2691 (40.256% identity in 313 aa overlap).


ensembl_gene_id: BP0726
symbol: BP0726
gene_biotype: protein_coding
description:
  Similar to Rhizobium sp probable peptide ABC transporter periplasmic binding protein Y4tO precursor SW:Y4TO_RHISN (P55669) (531 aa) fasta scores: E(): 5.6e-64, 37.786% id in 524 aa, and to Bradyrhizobium japonicum putative ABC transporter TR:Q9RH65 (EMBL:AF065159) (516 aa) fasta scores: E(): 1.1e-62, 37.670% id in 515 aa.


ensembl_gene_id: BP0727
symbol: BP0727
gene_biotype: protein_coding
description:
  Probable transcriptional regulator; Similar to Rhodococcus opacus putative regulator of catechol degradative operon CatR TR:O33539 (EMBL:X99622) (256 aa) fasta scores: E(): 1.1e-17, 33.468% id in 248 aa, and to Alcaligenes eutrophus hypothetical 30.8 kDa protein TR:Q9L789 (EMBL:AF225972) (279 aa) fasta scores: E(): 3.4e-22, 33.871% id in 248 aa.


ensembl_gene_id: BP0728
symbol: BP0728
gene_biotype: protein_coding
description:
  Probable transcriptional regulator; Similar to Streptomyces roseosporus TetR homologue WhiR TR:P72569 (EMBL:U58281) (179 aa) fasta scores: E(): 0.00038, 28.814% id in 118 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa1283 TR:Q9I461 (EMBL:AE004558) (186 aa) fasta scores: E(): 8.1e-17, 32.973% id in 185 aa. IS481 inserted immediately upstream of the start codon. It is not clear whether this insertion has any effect on the expression of this gene.


ensembl_gene_id: BP0731
symbol: nspC
gene_biotype: protein_coding
description:
  Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.


ensembl_gene_id: BP0732
symbol: BP0732
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Smb21630 TR:CAC49949 (EMBL:AL603647) (413 aa) fasta scores: E(): 2.6e-117, 67.317% id in 410 aa, and to Agrobacterium tumefaciens Agr_l_1365p TR:AAK89265 (EMBL:AE008267) (412 aa) fasta scores: E(): 4.7e-117, 67.317% id in 410 aa.


ensembl_gene_id: BP0735
symbol: BP0735
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Xylella fastidiosa hypothetical protein Xf1840 TR:Q9PCE1 (EMBL:AE004005) (237 aa) fasta scores: E(): 4e-29, 47.486% id in 179 aa, and to Zymomonas mobilis hypothetical 22.3 kDa protein zm10orf9 TR:Q9XBR4 (EMBL:AF157493) (204 aa) fasta scores: E(): 1.4e-18, 34.807% id in 181 aa; Belongs to the UPF0312 family.


ensembl_gene_id: BP0736
symbol: bfrF
gene_biotype: protein_coding
description:
  Similar to Escherichia coli ferrichrome-iron receptor precursor FhuA or TonA or B0150 SW:FHUA_ECOLI (P06971) (747 aa) fasta scores: E(): 7.8e-38, 40.000% id in 725 aa, and to Pseudomonas aeruginosa probable hydroxamate-type ferrisiderophore receptor Pa0470 TR:Q9I648 (EMBL:AE004484) (802 aa) fasta scores: E(): 1.4e-103, 40.000% id in 815 aa.


ensembl_gene_id: BP0737
symbol: BP0737
gene_biotype: protein_coding
description:
  Similar to Bordetella bronchiseptica putative inner membrane sensor BupR TR:Q9L429 (EMBL:AJ251793) (344 aa) fasta scores: E(): 7.6e-19, 33.025% id in 324 aa, and to Pseudomonas aeruginosa probable transmembrane sensor Pa2388 TR:Q9I192 (EMBL:AE004665) (331 aa) fasta scores: E(): 3.9e-47, 44.377% id in 329 aa.


ensembl_gene_id: BP0741
symbol: BP0741
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Bacteriophage 434 repressor protein CI SW:RPC1_BP434 (P16117) (94 aa) fasta scores: E(): 1.2, 35.088% id in 57 aa, and to Bacillus subtilis hypothetical 15.6 kDa protein TR:O52855 (EMBL:U09819) (139 aa) fasta scores: E(): 0.38, 33.333% id in 69 aa. It's possible that the upstream IS481 element has inserted within the N-terminus of this CDS. Also similar to BP0744, 65.972% identity (70.370% ungapped) in 144 aa overlap.


ensembl_gene_id: BP0745
symbol: BP0745
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Neisseria cinerea BasR TR:Q9F9Y4 (EMBL:AF139614) (222 aa) fasta scores: E(): 0.17, 28.729% id in 181 aa, and to Bordetella pertussis transcriptional regulatory protein, putative BasR TR:Q9S3M3 (EMBL:AJ132741) (223 aa) fasta scores: E(): 0.0027, 28.319% id in 226 aa.


ensembl_gene_id: BP0746
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: BP0747
symbol: obg
gene_biotype: protein_coding
description:
  Probable GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: BP0748
symbol: rpmA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 50S ribosomal protein L27 RpmA or B3185 SW:RL27_ECOLI (P02427) (84 aa) fasta scores: E(): 2.8e-21, 71.084% id in 83 aa, and to Vibrio cholerae ribosomal protein L27 Vc0436 TR:Q9KUS9 (EMBL:AE004131) (86 aa) fasta scores: E(): 5.1e-23, 73.256% id in 86 aa; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: BP0749
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: BP0750
symbol: BP0750
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Streptomyces coelicolor hypothetical 41.1 kDa protein Scf41.20C TR:Q9RJU9 (EMBL:AL117387) (390 aa) fasta scores: E(): 2.9e-72, 54.856% id in 381 aa, and to Agrobacterium tumefaciens Agr_c_4970p TR:AAK88456 (EMBL:AE008188) (386 aa) fasta scores: E(): 7e-73, 53.457% id in 376 aa.


ensembl_gene_id: BP0751
symbol: ispB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli octaprenyl-diphosphate synthase IspB or Cel or B3187 SW:ISPB_ECOLI (P19641) (323 aa) fasta scores: E(): 1.2e-63, 53.560% id in 323 aa, and to Vibrio cholerae octaprenyl-diphosphate synthase Vc0434 TR:Q9KUT1 (EMBL:AE004131) (348 aa) fasta scores: E(): 3.1e-63, 53.870% id in 323 aa; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: BP0752
symbol: BP0752
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Escherichia coli transcriptional activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 4.6e-23, 34.507% id in 284 aa, and to Agrobacterium tumefaciens regulatory protein NocR SW:NOCR_AGRT5 (Q00678) (300 aa) fasta scores: E(): 5.3e-22, 33.333% id in 285 aa.


ensembl_gene_id: BP0753
symbol: hyuA
gene_biotype: protein_coding
description:
  Similar to Pseudomonas sp hydantoin utilization protein A HyuA SW:HYUA_PSESN (Q01262) (690 aa) fasta scores: E(): 2.8e-78, 35.044% id in 682 aa, and to Rhizobium loti hydantoin utilization protein A Mlr7024 TR:Q987J7 (EMBL:AP003010) (692 aa) fasta scores: E(): 2.1e-118, 47.415% id in 677 aa.


ensembl_gene_id: BP0754
symbol: hyuB
gene_biotype: protein_coding
description:
  Similar to Pseudomonas sp hydantoin utilization protein B HyuB SW:HYUB_PSESN (Q01263) (592 aa) fasta scores: E(): 1.7e-52, 31.134% id in 591 aa, and to Rhizobium loti hydantoin utilization protein B Mlr7025 TR:Q987J6 (EMBL:AP003010) (661 aa) fasta scores: E(): 4.6e-142, 55.807% id in 663 aa. Also similar to BP0821 (58.133% identity in 664 aa overlap).


ensembl_gene_id: BP0755
symbol: BP0755
gene_biotype: protein_coding
description:
  Similar to Proteus vulgaris L-amino acid deaminase Lad TR:Q9LCB2 (EMBL:AB030003) (471 aa) fasta scores: E(): 9.2e-29, 31.628% id in 430 aa, and to Proteus mirabilis amino acid deaminase Aad TR:Q51890 (EMBL:U35383) (473 aa) fasta scores: E(): 7e-29, 28.638% id in 426 aa.


ensembl_gene_id: BP0757
symbol: gabD
gene_biotype: protein_coding
description:
  Transposase (Pseudogene); Inverted repeat for IS481 element; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: BP0758
symbol: cyaC
gene_biotype: protein_coding
description:
  Cyclolysin-activating lysine-acyltransferase; Involved in fatty acylation of the protoxin (CyaA) at two internal lysine residues, thereby converting it to the active toxin. The acyl donor is ACP; Belongs to the RTX toxin acyltransferase family.


ensembl_gene_id: BP0760
symbol: cyaA
gene_biotype: protein_coding
description:
  Bifunctional hemolysin-adenylate cyclase precursor; This adenylate cyclase belongs to a special class of bacterial toxin. It causes whooping cough by acting on mammalian cells by elevating cAMP-concentration and thus disrupts normal cell function; In the C-terminal section; belongs to the RTX prokaryotic toxin family.


ensembl_gene_id: BP0761
symbol: cyaB
gene_biotype: protein_coding
description:
  Cyclolysin secretion ATP-binding protein; Involved in the export of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin); Belongs to the ABC transporter superfamily. Cyclolysin exporter (TC 3.A.1.109.2) family.


ensembl_gene_id: BP0762
symbol: cyaD
gene_biotype: protein_coding
description:
  Cyclolysin secretion protein; CyaD is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin); Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: BP0763
symbol: cyaE
gene_biotype: protein_coding
description:
  Cyclolysin secretion protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin); Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.


ensembl_gene_id: BP0764
symbol: cyaX
gene_biotype: protein_coding
description:
  Probable LysR-family transcriptional regulator; Identical to the previously sequenced Bordetella pertussis unknown Orf CyaX TR:Q45360 (EMBL:X14199) (285 aa) fasta scores: E(): 1.6e-99, 93.411% id in 258 aa, and similar to Escherichia coli transcriptional activator protein IlvY or B3773 SW:ILVY_ECOLI (P05827) (297 aa) fasta scores: E(): 1.3e-09, 26.733% id in 303 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0765
symbol: BP0765
gene_biotype: protein_coding
description:
  Probable extracellular solute-binding protein; Similar to Escherichia coli amino-acid ABC transporter binding protein YbeJ precursor YbeJ or B0655 SW:YBEJ_ECOLI (P37902) (302 aa) fasta scores: E(): 2.3e-50, 47.038% id in 287 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter Pa1342 TR:Q9I402 (EMBL:AE004563) (302 aa) fasta scores: E(): 2.5e-52, 47.797% id in 295 aa. Also similar to BP0057, 51.325% identity (52.013% ungapped) in 302 aa overlap.


ensembl_gene_id: BP0767
symbol: gltK-2
gene_biotype: protein_coding
description:
  Glutamate/aspartate transport system permease protein (Pseudogene); (G)5 in pertussis; (G)6 in parapertussis.


ensembl_gene_id: BP0768
symbol: gltL
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutamate/aspartate transport ATP-binding protein GltL or B0652 or Z0802 or Ecs0691 SW:GLTL_ECOLI (P41076) (241 aa) fasta scores: E(): 5.2e-51, 65.000% id in 240 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa1339 TR:Q9I405 (EMBL:AE004563) (244 aa) fasta scores: E(): 5.5e-57, 69.262% id in 244 aa. Similar to several B. pertussis CDSs: BP1181, P3828, BP1534, BP1855, BP1575, BP1362, P0054, and BP1510.


ensembl_gene_id: BP0769
symbol: BP0769
gene_biotype: protein_coding
description:
  Probable aminotransferase; Similar to Staphylococcus aureus D-alanine aminotransferase TR:Q9KWZ6 (EMBL:Y14816) (282 aa) fasta scores: E(): 4.4e-32, 39.130% id in 276 aa, and to Brucella suis hypothetical 32.0 kDa protein TR:CAC67779 (EMBL:AJ305234) (289 aa) fasta scores: E(): 1.5e-47, 48.387% id in 279 aa.


ensembl_gene_id: BP0770
symbol: BP0770
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti conserved hypothetical protein Smb20087 TR:CAC48487 (EMBL:AL603642) (201 aa) fasta scores: E(): 0.00043, 27.807% id in 187 aa, and to Rhizobium loti Mll2445 protein Mll2445 TR:Q98ID9 (EMBL:AP002999) (200 aa) fasta scores: E(): 9e-06, 28.495% id in 186 aa.


ensembl_gene_id: BP0771
symbol: BP0771
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 3e-27, 34.727% id in 311 aa, and to Alcaligenes eutrophus hypothetical 35.6 kDa protein in gbd 5'region precursor SW:YGB7_ALCEU (Q44018) (327 aa) fasta scores: E(): 3.9e-30, 37.294% id in 303 aa.


ensembl_gene_id: BP0772
symbol: FabG-2
gene_biotype: protein_coding
description:
  Similar to Zoogloea ramigera acetoacetyl-CoA reductase PhbB SW:PHBB_ZOORA (P23238) (241 aa) fasta scores: E(): 2.3e-25, 38.710% id in 248 aa, and to Azospirillum brasilense nodulation protein G NodG SW:NODG_AZOBR (P17611) (246 aa) fasta scores: E(): 8.7e-26, 35.458% id in 251 aa.


ensembl_gene_id: BP0773
symbol: BP0773
gene_biotype: protein_coding
description:
  Similar to Methanococcus aeolicus acetohydroxyacid synthase large subunit IlvB TR:O08353 (EMBL:U35458) (599 aa) fasta scores: E(): 2.2e-48, 32.105% id in 570 aa, and to Methanococcus maripaludis acetohydroxyacid synthase large subunit IlvB TR:Q9Y8J0 (EMBL:AF118061) (587 aa) fasta scores: E(): 3.6e-46, 32.737% id in 559 aa; Belongs to the TPP enzyme family.


ensembl_gene_id: BP0774
symbol: BP0774
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa5525 TR:Q9HT48 (EMBL:AE004965) (246 aa) fasta scores: E(): 8.4e-20, 37.069% id in 232 aa, and to Rhizobium loti probable transcriptional regulator Mlr1038 TR:Q98LF9 (EMBL:AP002996) (226 aa) fasta scores: E(): 1e-19, 34.483% id in 203 aa.


ensembl_gene_id: BP0775
symbol: BP0775
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to the C-terminal region of Serratia marcescens extracellular serine protease precursor SW:PRTS_SERMA (P09489) (1045 aa) fasta scores: E(): 1.2e-19, 30.435% id in 276 aa, and to Rhizobium loti serine proteinase Mlr1935 TR:Q98JH8 (EMBL:AP002998) (1213 aa) fasta scores: E(): 1.9e-29, 35.275% id in 309 aa. Also similar to the C-terminal regions of BP1661 (43.344% identity in 323 aa overlap) and BP1110 (42.722% identity in 316 aa overlap).


ensembl_gene_id: BP0776
symbol: BP0776
gene_biotype: protein_coding
description:
  Similar to Chelatobacter heintzii nta operon transcriptional regulator NtaR or NmoR SW:NTRA_CHEHE (P54988) (210 aa) fasta scores: E(): 5.8e-21, 40.476% id in 210 aa, and to EDTA-degrading bacterium BNC1 EmoR TR:Q9F9T1 (EMBL:AF176664) (207 aa) fasta scores: E(): 7.5e-20, 37.255% id in 204 aa.


ensembl_gene_id: BP0777
symbol: BP0777
gene_biotype: protein_coding
description:
  Probable Zinc-binding dehydrogenase; Similar to Rhodopseudomonas palustris putative NADPH:quinone oxidoreductase BadC TR:O07459 (EMBL:U75363) (339 aa) fasta scores: E(): 5.9e-22, 34.393% id in 346 aa, and to Halobacterium sp alcohol dehydrogenase Adh4 or Vng1821G TR:Q9HP38 (EMBL:AE005083) (347 aa) fasta scores: E(): 5.3e-29, 43.875% id in 351 aa.


ensembl_gene_id: BP0778
symbol: BP0778
gene_biotype: protein_coding
description:
  Putative acetyl-CoA synthetase; Similar to Amycolatopsis spHR167 feruloyl-CoA synthetase Fcs TR:Q9EY88 (EMBL:AJ290449) (491 aa) fasta scores: E(): 2.9e-35, 33.758% id in 471 aa, and to Rhizobium loti probable acid-CoA ligase mlr1843 TR:Q98JP7 (EMBL:AP002998) (495 aa) fasta scores: E(): 1.3e-35, 31.911% id in 492 aa.


ensembl_gene_id: BP0779
symbol: BP0779
gene_biotype: protein_coding
description:
  Weakly similar to Vibrio cholerae hypothetical protein Vca0936 TR:Q9KL13 (EMBL:AE004420) (312 aa) fasta scores: E(): 0.077, 25.258% id in 194 aa. Similar to BP2869, 43.785% identity (43.909% ungapped) in 354 aa overlap.


ensembl_gene_id: BP0780
symbol: BP0780
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pasteurella multocida hypothetical protein Pm1265 TR:Q9CLG9 (EMBL:AE006165) (254 aa) fasta scores: E(): 1.9e-27, 35.628% id in 247 aa, and to Agrobacterium tumefaciens Agr_l_128gMp TR:AAK88848 (EMBL:AE008228) (267 aa) fasta scores: E(): 4.4e-29, 36.052% id in 233 aa.


ensembl_gene_id: BP0781
symbol: BP0781
gene_biotype: protein_coding
description:
  Probable ABC transporter, ATP-binding component; Similar to Arthrobacter keyseri transporter ATPase PtrA TR:Q9AGL2 (EMBL:AF331043) (275 aa) fasta scores: E(): 2.6e-35, 48.963% id in 241 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa2294 TR:Q9I1I1 (EMBL:AE004655) (284 aa) fasta scores: E(): 1.1e-36, 46.457% id in 254 aa.


ensembl_gene_id: BP0782
symbol: BP0782
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Agrobacterium tumefaciens Agr_l_3061p TR:AAK90103 (EMBL:AE008354) (316 aa) fasta scores: E(): 3.6e-08, 27.181% id in 298 aa, and to Rhizobium loti Mll8573 protein Mll8573 TR:Q982M7 (EMBL:AP003014) (342 aa) fasta scores: E(): 7.9e-11, 26.796% id in 362 aa. Also similar to BP2866, 46.197% identity (47.536% ungapped) in 355 aa overlap.


ensembl_gene_id: BP0783
symbol: BP0783
gene_biotype: protein_coding
description:
  Putative dioxygenase; Similar to Rhizobium loti Mlr0372 protein Mlr0372 TR:Q98MZ7 (EMBL:AP002994) (296 aa) fasta scores: E(): 0.00021, 24.510% id in 306 aa, and to Agrobacterium tumefaciens Agr_c_2627p TR:AAK87216 (EMBL:AE008068) (292 aa) fasta scores: E(): 0.022, 28.525% id in 305 aa.


ensembl_gene_id: BP0784
symbol: ilvB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli acetolactate synthase isozyme III large subunit IlvI or B0077 SW:ILVI_ECOLI (P00893) (574 aa) fasta scores: E(): 1e-42, 30.515% id in 544 aa, and to Methanococcus aeolicus acetohydroxyacid synthase large subunit IlvB TR:O08353 (EMBL:U35458) (599 aa) fasta scores: E(): 5.4e-59, 34.581% id in 561 aa; Belongs to the TPP enzyme family.


ensembl_gene_id: BP0785
symbol: BP0785
gene_biotype: protein_coding
description:
  Putative mechanosensitive channel protein; Similar to Rhizobium loti probable integral membrane protein Mlr0973 TR:Q98LL9 (EMBL:AP002996) (410 aa) fasta scores: E(): 1.5e-13, 28.019% id in 207 aa, and to Rhizobium meliloti conserved hypothetical membrane protein Smb20863 TR:CAC49557 (EMBL:AL603646) (343 aa) fasta scores: E(): 6.1e-13, 26.054% id in 261 aa.


ensembl_gene_id: BP0789
symbol: ilvI
gene_biotype: protein_coding
description:
  N-terminal region of a putative membrane protein (Pseudogene); 4 probable transmembrane helices predicted for BP0787 by TMHMM2.0 at aa 21-43, 88-110, 117-139 and 154-176.


ensembl_gene_id: BP0790
symbol: ilvH
gene_biotype: protein_coding
description:
  Similar to Escherichia coli acetolactate synthase isozyme III small subunit IlvH or BrnP or B0078 SW:ILVH_ECOLI (P00894) (163 aa) fasta scores: E(): 3.7e-31, 55.828% id in 163 aa, and to Neisseria meningitidis acetolactate synthase isozyme III small subunit IlvH or Nma1765 or Nmb1576 TR:Q9JRF4 (EMBL:AL162757) (163 aa) fasta scores: E(): 8.5e-38, 66.871% id in 163 aa.


ensembl_gene_id: BP0791
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: BP0792
symbol: pssA
gene_biotype: protein_coding
description:
  Putative CDP-diacylglycerol--serine O-phosphatidyltransferase protein; Similar to Agrobacterium sp31749 phosphatidylserine synthase TR:AAL01116 (EMBL:AF410774) (274 aa) fasta scores: E(): 2.3e-21, 40.930% id in 215 aa, and to Pseudomonas aeruginosa phosphatidylserine synthase PssA or Pa4693 TR:Q9HVA3 (EMBL:AE004883) (271 aa) fasta scores: E(): 2.5e-47, 61.778% id in 225 aa; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: BP0794
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.


ensembl_gene_id: BP0795
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: BP0796
symbol: BP0796
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3069 TR:Q9HZD9 (EMBL:AE004731) (205 aa) fasta scores: E(): 3.5e-40, 54.634% id in 205 aa, and to Pseudomonas sp hypothetical 28.9 kDa protein Orf58 TR:AAK50290 (EMBL:U66917) (257 aa) fasta scores: E(): 1.1e-35, 45.852% id in 229 aa.


ensembl_gene_id: BP0798
symbol: tdcB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli threonine dehydratase catabolic TdcB or B3117 or Z4469 or Ecs3997 SW:THD2_ECOLI (P05792) (329 aa) fasta scores: E(): 1.6e-41, 45.246% id in 305 aa, and to Caulobacter crescentus threonine dehydratase Cc3635 TR:Q9A2D0 (EMBL:AE006022) (400 aa) fasta scores: E(): 4.1e-72, 52.897% id in 397 aa.


ensembl_gene_id: BP0799
symbol: BP0799
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Sphingomonas aromaticivorans hypothetical 21.4 kDa protein TR:O85864 (EMBL:AF079317) (196 aa) fasta scores: E(): 0.0065, 28.571% id in 161 aa.


ensembl_gene_id: BP0800
symbol: BP0800
gene_biotype: protein_coding
description:
  Probable zinc-binding dehydrogenase; Similar to Rhizobium loti NADPH quinone oxidoreductase Mll3767 TR:Q98FI0 (EMBL:AP003002) (326 aa) fasta scores: E(): 3e-60, 57.669% id in 326 aa, and to Rhizobium meliloti putative oxidoreductase protein Smc00034 TR:CAC45525 (EMBL:AL591785) (327 aa) fasta scores: E(): 8.3e-58, 53.681% id in 326 aa.


ensembl_gene_id: BP0801
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: BP0802
symbol: secG
gene_biotype: protein_coding
description:
  Protein-export membrane protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: BP0804
symbol: betT
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity choline transport protein BetT or B0314 or Z0401 or Ecs0360 SW:BETT_ECOLI (P17447) (677 aa) fasta scores: E(): 2.5e-111, 44.296% id in 675 aa, and to Erwinia amylovora high-affinity choline transport protein BetT TR:Q9F806 (EMBL:AF264948) (676 aa) fasta scores: E(): 1.5e-109, 43.004% id in 679 aa. Also similar to BP0831, 37.348% identity (38.522% ungapped) in 656 aa overlap; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: BP0805
symbol: BP0805
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa3174 TR:Q9HZ60 (EMBL:AE004741) (242 aa) fasta scores: E(): 1.4e-13, 31.048% id in 248 aa, and to Rhizobium meliloti putative transcription regulator protein Smc00263 TR:CAC46270 (EMBL:AL591788) (282 aa) fasta scores: E(): 1.4e-14, 30.000% id in 250 aa.


ensembl_gene_id: BP0806
symbol: BP0806
gene_biotype: protein_coding
description:
  Similar to Clostridium tetanomorphum methylaspartate ammonia-lyase SW:MAAL_CLOTT (Q05514) (413 aa) fasta scores: E(): 4.5e-51, 36.520% id in 408 aa, and to Citrobacter amalonaticus 3-methylaspartate ammonia-lyase TR:O66145 (EMBL:AB005294) (413 aa) fasta scores: E(): 1e-53, 38.107% id in 412 aa. Also similar to BP3177, 40.500% identity (40.704% ungapped) in 400 aa overlap.


ensembl_gene_id: BP0807
symbol: BP0807
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.3e-34, 35.737% id in 319 aa, and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 3.9e-38, 39.048% id in 315 aa.


ensembl_gene_id: BP0808
symbol: BP0808
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa0881 TR:Q9I564 (EMBL:AE004522) (450 aa) fasta scores: E(): 8e-29, 33.842% id in 393 aa, and to Agrobacterium tumefaciens Agr_l_2924p TR:AAK90029 (EMBL:AE008346) (448 aa) fasta scores: E(): 4.2e-31, 35.280% id in 428 aa.


ensembl_gene_id: BP0813
symbol: BP0813
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti probable short-chain dehydrogenase/reductase Mlr0808 TR:Q98LZ5 (EMBL:AP002995) (259 aa) fasta scores: E(): 1.2e-30, 45.985% id in 274 aa, and to Rhizobium meliloti putative oxidoreductase protein Smc01157 TR:CAC41799 (EMBL:AL591783) (259 aa) fasta scores: E(): 2.3e-21, 41.791% id in 268 aa.


ensembl_gene_id: BP0814
symbol: BP0814
gene_biotype: protein_coding
description:
  Similar to Escherichia coli probable transcriptional regulator LrhA or GenR or B2289 SW:LRHA_ECOLI (P36771) (312 aa) fasta scores: E(): 3.9e-37, 36.396% id in 283 aa, and to Erwinia chrysanthemi pectinase gene transcriptional regulator PecT SW:PECT_ERWCH (P52662) (316 aa) fasta scores: E(): 3.5e-36, 36.704% id in 267 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0815
symbol: metC-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cystathionine beta-lyase MetC or B3008 SW:METC_ECOLI (P06721) (395 aa) fasta scores: E(): 1.1e-56, 41.795% id in 390 aa, and to Rhizobium meliloti probable cystathionine beta-lyase protein TR:CAC46058 (EMBL:AL591787) (395 aa) fasta scores: E(): 2.6e-63, 46.073% id in 382 aa. Also similar to BP0112, 42.784% identity in 388 aa overlap.


ensembl_gene_id: BP0816
symbol: BP0816
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr7142 protein TR:Q987A0 (EMBL:AP003011) (349 aa) fasta scores: E(): 2.1e-12, 26.901% id in 342 aa, and to Rhizobium meliloti hypothetical protein Smb20435 TR:CAC48821 (EMBL:AL603643) (331 aa) fasta scores: E(): 2.3e-12, 26.586% id in 331 aa.


ensembl_gene_id: BP0817
symbol: BP0817
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.6e-32, 35.474% id in 327 aa, and to Agrobacterium tumefaciens Agr_l_312p TR::AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 6e-30, 33.739% id in 329 aa.


ensembl_gene_id: BP0818
symbol: BP0818
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Pseudomonas aeruginosa probable thiosulfate sulfurtransferase Pa2603 TR:Q9I0N4 (EMBL:AE004689) (527 aa) fasta scores: E(): 1.4e-45, 40.310% id in 516 aa, and to Agrobacterium tumefaciens Agr_pti_bx104p TR:AAK91049 (EMBL:AE007935) (395 aa) fasta scores: E(): 9.6e-31, 41.987% id in 312 aa.


ensembl_gene_id: BP0819
symbol: BP0819
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.4e-35, 37.037% id in 324 aa, and to Pseudomonas putida hypothetical 34.5 kDa protein in clcB-clcD intergenic region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 3.7e-32, 34.375% id in 320 aa.


ensembl_gene_id: BP0820
symbol: BP0820
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Agrobacterium tumefaciens Agr_l_1811p TR:AAK89479 (EMBL:AE008289) (440 aa) fasta scores: E(): 1.4e-42, 32.143% id in 448 aa, and to Rhizobium meliloti putative oxidoreductase Sma1850 TR:AAK65676 (EMBL:AE007288) (425 aa) fasta scores: E(): 2.5e-39, 33.724% id in 427 aa.


ensembl_gene_id: BP0821
symbol: hyuB-2
gene_biotype: protein_coding
description:
  Similar to Pseudomonas sp hydantoin utilization protein B HyuB SW:HYUB_PSESN (Q01263) (592 aa) fasta scores: E(): 4.3e-44, 29.223% id in 592 aa, and to Rhizobium loti hydantoin utilization protein B Mlr7025 TR:Q987J6 (EMBL:AP003010) (661 aa) fasta scores: E(): 5.8e-133, 52.108% id in 664 aa.


ensembl_gene_id: BP0822
symbol: hyuA-2
gene_biotype: protein_coding
description:
  Similar to Pseudomonas sp hydantoin utilization protein A hyuA SW:HYUA_PSESN (Q01262) (690 aa) fasta scores: E(): 1.3e-75, 34.776% id in 693 aa, and to Rhizobium loti hydantoin utilization protein A Mlr7024 TR:Q987J7 (EMBL:AP003010) (692 aa) fasta scores: E(): 8.9e-130, 53.254% id in 676 aa.


ensembl_gene_id: BP0823
symbol: BP0823
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Pseudomonas putida pca regulon regulatory protein PcaR SW:PCAR_PSEPU (Q52154) (291 aa) fasta scores: E(): 6e-07, 31.655% id in 139 aa, and to Rhodococcus opacus PcaR TR:O67983 (EMBL:AF003947) (265 aa) fasta scores: E(): 3.5e-08, 28.108% id in 185 aa.


ensembl_gene_id: BP0824
symbol: BP0824
gene_biotype: protein_coding
description:
  Azurin; Identical to the previously sequenced Bordetella bronchiseptica azurin SW:AZUR_BORBR (P00278) (129 aa) fasta scores: E(): 4.2e-49, 100.000% id in 129 aa,and similar to Alcaligenes xylosoxydans xylosoxydans azurin-I precursor Az1 TR:O87169 (EMBL:AB013077) (150 aa) fasta scores: E(): 4e-42, 74.667% id in 150 aa.


ensembl_gene_id: BP0825
symbol: BP0825
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae hypothetical protein Vc2666 TR:Q9KNR5 (EMBL:AE004332) (205 aa) fasta scores: E(): 2.1e-30, 43.781% id in 201 aa, and to Bacillus halodurans Bh3429 protein Bh3429 TR:Q9K7D5 (EMBL:AP001518) (215 aa) fasta scores: E(): 3.8e-14, 31.818% id in 198 aa.


ensembl_gene_id: BP0826
symbol: BP0826
gene_biotype: protein_coding
description:
  Outer membrane component of multidrug efflux system; Similar to Pseudomonas aeruginosa mexE, mexF & oprN genes OprN TR:P95423 (EMBL:X99514) (472 aa) fasta scores: E(): 5e-47, 39.703% id in 471 aa, and to Xanthomonas maltophilia (Pseudomonas maltophilia) (Stenotrophomonas SmeC TR:Q9RBY7 (EMBL:AF173226) (471 aa) fasta scores: E(): 1.1e-31, 33.612% id in 479 aa.


ensembl_gene_id: BP0827
symbol: BP0827
gene_biotype: protein_coding
description:
  Integral membrane component of multidrug efflux system; Similar to Pseudomonas aeruginosa probable Rnd efflux transporter Pa4207 TR:Q9HWH4 (EMBL:AE004837) (1029 aa) fasta scores: E(): 0, 69.697% id in 1023 aa, and to Vibrio cholerae multidrug resistance protein, putative Vc0164 TR:Q9KVI2 (EMBL:AE004106) (1036 aa) fasta scores: E(): 3.4e-183, 48.309% id in 1035 aa; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: BP0828
symbol: BP0828
gene_biotype: protein_coding
description:
  Probable HlyD-family secretion protein; Similar to Pseudomonas aeruginosa probable Rnd efflux membrane fusion protein precursor Pa4206 TR:Q9HWH5 (EMBL:AE004837) (370 aa) fasta scores: E(): 4.6e-48, 48.011% id in 352 aa, and to Vibrio cholerae hypothetical protein Vc0165 TR:Q9KVI1 (EMBL:AE004106) (368 aa) fasta scores: E(): 1.7e-30, 36.593% id in 317 aa.


ensembl_gene_id: BP0829
symbol: BP0829
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Streptomyces lipmanii StgU TR:O88133 (EMBL:AJ006517) (210 aa) fasta scores: E(): 7.2e-21, 41.743% id in 218 aa, and to Streptomyces coelicolor hypothetical 23.3 kDa protein Sc2h4.05 TR:O86588 (EMBL:AL031514) (216 aa) fasta scores: E(): 1.1e-19, 39.524% id in 210 aa.


ensembl_gene_id: BP0831
symbol: betT-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity choline transport protein BetT or B0314 or Z0401 or Ecs0360 SW:BETT_ECOLI (P17447) (677 aa) fasta scores: E(): 2.1e-92, 42.249% id in 658 aa, and to Pseudomonas aeruginosa probable choline transporter Pa5291 TR:Q9HTR3 (EMBL:AE004941) (661 aa) fasta scores: E(): 2.5e-188, 74.732% id in 653 aa. Also similar to BP0804, 37.348% identity (38.522% ungapped) in 656 aa overlap; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: BP0832
symbol: BP0832
gene_biotype: protein_coding
description:
  Similar to Yersinia pestis hypothetical transcriptional regulator TR:Q9ZC44 (EMBL:AL031866) (320 aa) fasta scores: E(): 3.9e-39, 54.091% id in 220 aa, and to Rhizobium meliloti putative LysR-type regulator Sma0498 TR:AAK64920 (EMBL:AE007219) (299 aa) fasta scores: E(): 2.7e-13, 31.364% id in 220 aa.


ensembl_gene_id: BP0834
symbol: BP0834
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); (CG)3 in pertussis; (CG)4 in parapertussis and bronchiseptica.


ensembl_gene_id: BP0835
symbol: BP0835
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Bacillus megaterium hypothetical 24.9 kDa protein in cytochrome p450meg gene 3'region TR:Q06074 (EMBL:Z21972) (216 aa) fasta scores: E(): 9.7e-13, 31.658% id in 199 aa, and to Caulobacter crescentus Pap2 superfamily protein Cc3019 TR:Q9A424 (EMBL:AE005965) (259 aa) fasta scores: E(): 1.3e-10, 36.134% id in 238 aa.


ensembl_gene_id: BP0836
symbol: BP0836
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti putative oxidoreductase protein Smc01572 TR:CAC46902 (EMBL:AL591790) (155 aa) fasta scores: E(): 0.00047, 32.593% id in 135 aa, and to Rhizobium loti probable oxidoreductase Mlr0254 TR:Q98N82 (EMBL:AP002994) (305 aa) fasta scores: E(): 0.016, 30.075% id in 133 aa.


ensembl_gene_id: BP0837
symbol: BP0837
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa4093 TR:Q9HWT5 (EMBL:AE004825) (138 aa) fasta scores: E(): 1.2e-09, 40.164% id in 122 aa, and to Rhizobium meliloti hypothetical transmembrane protein Smc01805 TR:CAC45823 (EMBL:AL591786) (143 aa) fasta scores: E(): 3e-08, 34.815% id in 135 aa.


ensembl_gene_id: BP0839
symbol: BP0839
gene_biotype: protein_coding
description:
  Probable TetR-family transcriptional regulator (Pseudogene); Predicted helix-turn-helix motif with score 1613 (+4.68 SD) at aa 18-39, sequence TTIRAIAKEADCTTGAIYPWFD.


ensembl_gene_id: BP0841
symbol: nuoA
gene_biotype: protein_coding
description:
  Probable NADH-ubiquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: BP0842
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase, 20 kDa subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).


ensembl_gene_id: BP0843
symbol: nuoC
gene_biotype: protein_coding
description:
  Respiratory-chain NADH dehydrogenase, 30 kDa subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: BP0844
symbol: nuoD
gene_biotype: protein_coding
description:
  Respiratory-chain NADH dehydrogenase, 49 kDa subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: BP0845
symbol: nuoE
gene_biotype: protein_coding
description:
  Similar to Rattus norvegicus NADH-ubiquinone oxidoreductase 24 kDa subunit precursor NdufV2 SW:NUHM_RAT (P19234) (241 aa) fasta scores: E(): 3.8e-22, 39.490% id in 157 aa, and to Neisseria meningitidis NADH dehydrogenase I, E subunit Nmb0245 TR:Q9K1B9 (EMBL:AE002381) (157 aa) fasta scores: E(): 8.2e-37, 62.000% id in 150 aa.


ensembl_gene_id: BP0846
symbol: nuoF
gene_biotype: protein_coding
description:
  Respiratory-chain NADH dehydrogenase, 51 kDa subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: BP0847
symbol: nuoG
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase, 75 kDa subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: BP0848
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase, chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: BP0849
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: BP0850
symbol: nuoJ
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase, chain J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: BP0851
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase, chain K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: BP0852
symbol: nuoL
gene_biotype: protein_coding
description:
  Similar to Synechococcus sp NADH-plastoquinone oxidoreductase chain 5 NdhF SW:NU5C_SYNP2 (P31971) (664 aa) fasta scores: E(): 3.2e-81, 42.285% id in 674 aa, and to Neisseria meningitidis NADH dehydrogenase I chain L NuoL or Nma0002 SW:NUOL_NEIMA (Q9JX92) (674 aa) fasta scores: E(): 9.9e-147, 61.367% id in 673 aa.


ensembl_gene_id: BP0853
symbol: nuoM
gene_biotype: protein_coding
description:
  Similar to Marchantia polymorpha NADH-ubiquinone oxidoreductase chain 4 Nd4 or Nad4 SW:NU4M_MARPO (P26848) (495 aa) fasta scores: E(): 1.3e-83, 47.510% id in 482 aa, and to Neisseria meningitidis NADH dehydrogenase chain M NuoM or Nma2229 TR:Q9JSL7 (EMBL:AL162758) (498 aa) fasta scores: E(): 8.3e-115, 64.414% id in 503 aa.


ensembl_gene_id: BP0854
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: BP0855
symbol: BP0855
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis hypothetical inner membrane protein Nma2227 TR:Q9JSL9 (EMBL:AL162758) (116 aa) fasta scores: E(): 4.5e-10, 36.634% id in 101 aa.


ensembl_gene_id: BP0856
symbol: bfrD
gene_biotype: protein_coding
description:
  Probable TonB-dependent receptor for iron transport; Probably involved in iron transport; Belongs to the TonB-dependent receptor family.


ensembl_gene_id: BP0857
symbol: bfrE
gene_biotype: protein_coding
description:
  Probable TonB-dependent receptor for iron transport; Similar to Pseudomonas aeruginosa hydroxamate-type ferrisiderophore receptor PiuA or Fiu or Pa4514 TR:O68590 (EMBL:AF051690) (753 aa) fasta scores: E(): 3.4e-106, 43.742% id in 775 aa, and to Escherichia coli probable TonB-dependent receptor YbiL precursor YbiL or B0805 SW:YBIL_ECOLI (P75780) (760 aa) fasta scores: E(): 7.2e-50, 35.058% id in 773 aa.


ensembl_gene_id: BP0858
symbol: BP0858
gene_biotype: protein_coding
description:
  Probable GnaT-family acetyltransferase; Similar to Caulobacter crescentus acetyltransferase, GnaT family Cc1083 TR:Q9A9B1 (EMBL:AE005785) (173 aa) fasta scores: E(): 3.2e-14, 32.530% id in 166 aa, and to Rhizobium loti Mll3172 protein Mll3172 TR:Q98GU4 (EMBL:AP003001) (179 aa) fasta scores: E(): 1.5e-13, 32.544% id in 169 aa.


ensembl_gene_id: BP0859
symbol: FabG-3
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase; Similar to Escherichia coli 7-alpha-hydroxysteroid dehydrogenase HdhA or HsdH or B1619 or X2624 or Ecs2327 SW:HDHA_ECOLI (P25529) (255 aa) fasta scores: E(): 4.6e-23, 36.800% id in 250 aa, and to Rhodopseudomonas palustris putative 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase BadH TR:O07457 (EMBL:U75363) (255 aa) fasta scores: E(): 3.9e-27, 41.569% id in 255 aa.


ensembl_gene_id: BP0860
symbol: BP0860
gene_biotype: protein_coding
description:
  Similar to Escherichia coli acetolactate synthase isozyme III large subunit IlvI or b0077 SW:ILVI_ECOLI (P00893) (574 aa) fasta scores: E(): 2e-18, 28.571% id in 532 aa, and to Rhizobium meliloti probable AtrC acetolactate syntase AtrC TR:AAK65177 (EMBL:AE007243) (570 aa) fasta scores: E(): 4.3e-100, 50.722% id in 554 aa; Belongs to the TPP enzyme family.


ensembl_gene_id: BP0861
symbol: BP0861
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 8.7e-43, 38.889% id in 324 aa, and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 4.2e-49, 46.226% id in 318 aa.


ensembl_gene_id: BP0862
symbol: BP0862
gene_biotype: protein_coding
description:
  Probable LysR-family transcriptional regulator; Similar to Salmonella typhimurium OsmT protein OsmT TR:CAC44465 (EMBL:AJ313506) (308 aa) fasta scores: E(): 1.3e-25, 34.354% id in 294 aa, and to Rhizobium meliloti putative transcriptional regulator protein smb20123 TR:CAC48523 (EMBL:AL603642) (298 aa) fasta scores: E(): 8.2e-30, 35.932% id in 295 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0863
symbol: serB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli, and phosphoserine phosphatase SerB or B4388 or Z5989 or Ecs5346 SW:SERB_ECOLI (P06862) (322 aa) fasta scores: E(): 2.1e-28, 46.444% id in 239 aa, and to Neisseria meningitidis putative phosphoserine phosphatase SerB or nma1179 TR:Q9JUR1 (EMBL:AL162755) (277 aa) fasta scores: E(): 1.6e-31, 49.327% id in 223 aa.


ensembl_gene_id: BP0864
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: BP0865
symbol: ispD
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2c-methyl-D-erythritol synthase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: BP0866
symbol: ispF
gene_biotype: protein_coding
description:
  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: BP0868
symbol: fbp
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase; Similar to Escherichia coli fructose-1,6-bisphosphatase Fbp or Fdp or B4232 SW:F16P_ECOLI (P09200) (332 aa) fasta scores: E(): 3.1e-49, 47.273% id in 330 aa, and to Pseudomonas aeruginosa fructose-1,6-bisphosphatase Fbp or Pa5110 TR:Q9HU73 (EMBL:AE004923) (336 aa) fasta scores: E(): 2.6e-97, 73.591% id in 337 aa.


ensembl_gene_id: BP0869
symbol: pepN
gene_biotype: protein_coding
description:
  Similar to Escherichia coli aminopeptidase N PepN or B0932 SW:AMPN_ECOLI (P04825) (869 aa) fasta scores: E(): 1.6e-65, 47.052% id in 899 aa, and to Caulobacter crescentus aminopeptidase N PepN or Cc2481 SW:AMPN_CAUCR (P37893) (863 aa) fasta scores: E(): 1.3e-70, 48.946% id in 901 aa.


ensembl_gene_id: BP0870
symbol: BP0870
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Zymomonas mobilis hypothetical 23.9 kDa protein TR:Q9EZA0 (EMBL:AF300471) (220 aa) fasta scores: E(): 0.00027, 33.333% id in 207 aa.


ensembl_gene_id: BP0872
symbol: BP0872
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti ATP-binding protein of ABC transporter Mll0815 TR:Q98LY9 (EMBL:AP002995) (601 aa) fasta scores: E(): 3.1e-156, 74.624% id in 599 aa, and to Agrobacterium tumefaciens Agr_l_309p TR:AAK88722 (EMBL:AE008213) (600 aa) fasta scores: E(): 4.1e-147, 68.781% id in 599 aa.


ensembl_gene_id: BP0873
symbol: tpm
gene_biotype: protein_coding
description:
  Similar to Pseudomonas syringae thiopurine S-methyltransferase Tpm SW:TPMT_PSESJ (O86262) (218 aa) fasta scores: E(): 1.1e-35, 44.495% id in 218 aa, and to Pseudomonas aeruginosa thiopurine methyltransferase Tpm or Pa2832 TR:Q9I011 (EMBL:AE004710) (218 aa) fasta scores: E(): 1.5e-37, 49.309% id in 217 aa; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.


ensembl_gene_id: BP0874
symbol: vir-18
gene_biotype: protein_coding
description:
  Vir-repressed protein; Identical to the previously sequenced Bordetella pertussis vir-repressed protein Vir-18 TR:Q04274 (EMBL:M37228) (23 aa) fasta scores: E(): 0.0007, 100.000% id in 23 aa.


ensembl_gene_id: BP0876
symbol: BP0876
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Escherichia coli hypothetical lipoprotein YdcL precursor YdcL or B1431 or Z2287 or Ecs2036 SW:YDCL_ECOLI (P76101) (222 aa) fasta scores: E(): 4.1e-13, 30.942% id in 223 aa, and to Rhizobium meliloti putative polysaccharide export system periplasmic transmembrane protein Smc01794 TR:CAC45812 (EMBL:AL591786) (191 aa) fasta scores: E(): 2.1, 28.161% id in 174 aa.


ensembl_gene_id: BP0877
symbol: ycgR
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.


ensembl_gene_id: BP0878
symbol: BP0878
gene_biotype: protein_coding
description:
  Putative phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.


ensembl_gene_id: BP0882
symbol: BP0882
gene_biotype: protein_coding
description:
  Putative exported protein (Pseudogene); (GCGCCGGC)3 in pertussis;(GCGCCGGC)2 in parapertussis and bronchiseptica.


ensembl_gene_id: BP0883
symbol: BP0883
gene_biotype: protein_coding
description:
  Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: BP0884
symbol: BP0884
gene_biotype: protein_coding
description:
  Probable carboxylase; Similar to Methanococcus jannaschii pyruvate carboxylase subunit B PycB or Mj1231 SW:PYCB_METJA (Q58628) (567 aa) fasta scores: E(): 5.8e-52, 35.685% id in 482 aa, and to Pyrococcus horikoshii 571aa long hypothetical oxaloacetate decarboxylase alpha chain ph0834 TR:O58564 (EMBL:AP000003) (571 aa) fasta scores: E(): 3.8e-49, 38.073% id in 436 aa.


ensembl_gene_id: BP0885
symbol: BP0885
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr4612 protein Mlr4612 TR:Q98DP4 (EMBL:AP003004) (122 aa) fasta scores: E(): 3, 29.487% id in 78 aa.


ensembl_gene_id: BP0886
symbol: BP0886
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Mycobacterium tuberculosis CDC1551 conserved hypothetical protein Mt2360 TR:AAK46645 (EMBL:AE007078) (307 aa) fasta scores: E(): 2e-09, 25.498% id in 251 aa, and to Agrobacterium tumefaciens Agr_c_2623p TR:AAK87214 (EMBL:AE008068) (291 aa) fasta scores: E(): 6e-07, 24.413% id in 213 aa.


ensembl_gene_id: BP0887
symbol: BP0887
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Arabidopsis thaliana induced upon wounding stress TR:Q39171 (EMBL:X99793) (386 aa) fasta scores: E(): 9.1e-20, 30.458% id in 371 aa, and to Arabidopsis thaliana hypothetical 44.2 kDa protein T22a6.50 or At4g24220 TR:Q9STX2 (EMBL:AL078637) (388 aa) fasta scores: E(): 6.2e-26, 31.892% id in 370 aa.


ensembl_gene_id: BP0888
symbol: BP0888
gene_biotype: protein_coding
description:
  Similar to Bacillus subtilis hypothetical transcriptional regulator YurK SW:YURK_BACSU (O32152) (242 aa) fasta scores: E(): 2.1e-15, 30.472% id in 233 aa, and to Deinococcus radiodurans transcriptional regulator, GntR family dra0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 3.7e-12, 29.046% id in 241 aa.


ensembl_gene_id: BP0889
symbol: accC
gene_biotype: protein_coding
description:
  Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: BP0894
symbol: pmi
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti mannose-6-phosphate isomerase Pmi or R02982 or Smc03111 SW:MANA_RHIME (P29954) (387 aa) fasta scores: E(): 4.5, 27.763% id in 389 aa, and to Caulobacter crescentus mannose-6-phosphate isomerase Cc3617 TR:Q9A2E8 (EMBL:AE006020) (386 aa) fasta scores: E(): 1.3e-13, 32.031% id in 384 aa.


ensembl_gene_id: BP0895
symbol: BP0895
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Halobacterium sp 50S ribosomal protein l44E Rpl44e or Vng0551G TR:Q9HRT6 (EMBL:AE005006) (61 aa) fasta scores: E(): 8.8, 39.024% id in 41 aa.


ensembl_gene_id: BP0898
symbol: BP0898
gene_biotype: protein_coding
description:
  Putative ferredoxin; Similar to Pseudomonas spCA10 ferredoxin component of carbazole 1,9a-dioxygenase CaraC TR:O32475 (EMBL:D89064) (107 aa) fasta scores: E(): 0.16, 28.736% id in 87 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4711 TR:Q9HV87 (EMBL:AE004885) (115 aa) fasta scores: E(): 3.9e-10, 35.965% id in 114 aa.


ensembl_gene_id: BP0899
symbol: BP0899
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti ABC transporter, ATP-binding protein Mlr7818 TR:Q984W3 (EMBL:AP003012) (627 aa) fasta scores: E(): 1.9e-115, 56.324% id in 593 aa, and to Rhizobium meliloti probable ABC transporter ATP-binding transmembrane protein Smc00550 TR:CAC45699 (EMBL:AL591786) (627 aa) fasta scores: E(): 5.7e-117, 57.022% id in 591 aa.


ensembl_gene_id: BP0900
symbol: BP0900
gene_biotype: protein_coding
description:
  Probable oxidoreductase; Similar to Corynebacterium SP 2,5-diketo-D-gluconic acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta scores: E(): 5.9e-54, 53.008% id in 266 aa, and to Streptomyces coelicolor putative oxidoreductase Sc4b5.01C TR:Q9ZBW7 (EMBL:AL034443) (277 aa) fasta scores: E(): 1.7e-61, 58.303% id in 271 aa.


ensembl_gene_id: BP0901
symbol: BP0901
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative aldo/keto reductase Scf81.28C TR:Q9RJC4 (EMBL:AL133171) (307 aa) fasta scores: E(): 6.4e-83, 66.667% id in 309 aa, and to Escherichia coli hypothetical oxidoreductase YajO or b0419 SW:YAJO_ECOLI (P77735) (324 aa) fasta scores: E(): 9.9e-80, 61.846% id in 325 aa.


ensembl_gene_id: BP0902
symbol: BP0902
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Caulobacter crescentus hypothetical protein Cc2926 TR:Q9A4B1 (EMBL:AE005957) (70 aa) fasta scores: E(): 0.0073, 44.231% id in 52 aa.


ensembl_gene_id: BP0903
symbol: BP0903
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa1909 TR:Q9I2J5 (EMBL:AE004617) (383 aa) fasta scores: E(): 1.4e-72, 52.910% id in 378 aa, and to Caulobacter crescentus hypothetical protein Cc2927 TR:Q9A4B0 (EMBL:AE005957) (394 aa) fasta scores: E(): 2.4e-53, 50.681% id in 367 aa.


ensembl_gene_id: BP0904
symbol: pphA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli serine/threonine protein phosphatase 1 PphA or PrpA or B1838 SW:PRP1_ECOLI (P55798) (218 aa) fasta scores: E(): 1.9e-18, 34.821% id in 224 aa, and to Bacteriophage lambda serine/threonine protein phosphatase SW:PP_LAMBD (P03772) (221 aa) fasta scores: E(): 1.2e-18, 33.803% id in 213 aa.


ensembl_gene_id: BP0905
symbol: mrcA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli penicillin-binding protein 1A MrcA or PonA or B3396 SW:PBPA_ECOLI (P02918) (850 aa) fasta scores: E(): 2.1e-61, 37.243% id in 827 aa, and to Pseudomonas aeruginosa penicillin-binding protein 1A MrcA or PonA or Pa5045 SW:PBPA_PSEAE (Q07806) (822 aa) fasta scores: E(): 3.7e-62, 38.882% id in 805 aa.


ensembl_gene_id: BP0906
symbol: BP0906
gene_biotype: protein_coding
description:
  Putative peptidase; Similar to Rickettsia conorii acylamino-acid-releasing enzyme Rc0603 TR:AAL03141 (EMBL:AE008621) (676 aa) fasta scores: E(): 2.3e-62, 34.783% id in 621 aa, and to Caulobacter crescentus prolyl oligopeptidase family protein Cc3723 TR:Q9A243 (EMBL:AE006030) (667 aa) fasta scores: E(): 3.4e-42, 30.653% id in 659 aa.


ensembl_gene_id: BP0909
symbol: dinP
gene_biotype: protein_coding
description:
  DNA-damage-inducible protein p; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: BP0911
symbol: BP0911
gene_biotype: protein_coding
description:
  N-terminal region of a putative decarboxylase (pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481. No significant database matches.


ensembl_gene_id: BP0913
symbol: BP0913
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator (Pseudogene); (GC)2 in pertussis; (GC)3 in parapertussis and bronchiseptica.


ensembl_gene_id: BP0914
symbol: BP0914
gene_biotype: protein_coding
description:
  Probable inner membrane component of binding-protein-dependent transport system; Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or B0367 SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 1e-26, 35.887% id in 248 aa, and to Pseudomonas aeruginosa probable permease of ABC taurine transporter Pa3936 TR:Q9HX80 (EMBL:AE004811) (272 aa) fasta scores: E(): 4.9e-27, 33.585% id in 265 aa.


ensembl_gene_id: BP0915
symbol: BP0915
gene_biotype: protein_coding
description:
  Probable inner membrane component of binding-protein-dependent transport system; Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or B0367 SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 2.1e-25, 32.530% id in 249 aa, and to Rhizobium loti taurine transport system permease protein Mlr4519 TR:Q98DW5 (EMBL:AP003004) (286 aa) fasta scores: E(): 4.4e-24, 32.830% id in 265 aa.


ensembl_gene_id: BP0918
symbol: BP0918
gene_biotype: protein_coding
description:
  Putative ATP-binding protein of a transporter (Pseudogene); TGA in-frame stop codon in pertussis; GGA in parapertussis and bronchiseptica.


ensembl_gene_id: BP0919
symbol: gabD-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or B2661 SW:GABD_ECOLI (P25526) (482 aa) fasta scores: E(): 1.3e-46, 35.532% id in 470 aa, and to Bacillus halodurans NADP-dependent glyceraldehyde-3-phosphate dehydrogenase Bh1738 TR:Q9KC36 (EMBL:AP001513) (482 aa) fasta scores: E(): 7.4e-67, 40.812% id in 468 aa.


ensembl_gene_id: BP0920
symbol: BP0920
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Salmonella typhi hypothetical protein R0146 TR:Q9L5J6 (EMBL:AF250878) (467 aa) fasta scores: E(): 4.6e-137, 73.176% id in 466 aa.


ensembl_gene_id: BP0921
symbol: citB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli citrate utilization protein B CitB SW:CIT2_ECOLI (P05853) (379 aa) fasta scores: E(): 2.6e-91, 60.743% id in 377 aa, and to Salmonella typhi putative citrate utilisation protein CitB TR:Q9L5J7 (EMBL:AF250878) (379 aa) fasta scores: E(): 2.3e-90, 60.212% id in 377 aa.


ensembl_gene_id: BP0922
symbol: BP0922
gene_biotype: protein_coding
description:
  Similar to Bacillus subtilis hypothetical 39.5 kDa protein in sigZ-csn intergenic region YraM SW:YRAM_BACSU (O07931) (367 aa) fasta scores: E(): 3.4e-41, 38.462% id in 364 aa, and to Vibrio cholerae hypothetical protein Vc1339 TR:Q9KSB9 (EMBL:AE004213) (400 aa) fasta scores: E(): 5.1e-39, 34.896% id in 384 aa. Also similar to BP2370, 35.459% identity (36.968% ungapped) in 392 aa overlap.


ensembl_gene_id: BP0923
symbol: BP0923
gene_biotype: protein_coding
description:
  Similar to Methanococcus jannaschii hypothetical protein Mj0255 SW:Y255_METJA (Q57703) (251 aa) fasta scores: E(): 2.6e-16, 32.500% id in 240 aa, and to Methanothermobacter thermautotrophicus conserved protein Mth1674 TR:O27710 (EMBL:AE000925) (258 aa) fasta scores: E(): 3.5e-16, 30.116% id in 259 aa.


ensembl_gene_id: BP0924
symbol: BP0924
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Klebsiella oxytoca CymJ TR:Q48400 (EMBL:X86014) (268 aa) fasta scores: E(): 5.8e-10, 24.895% id in 237 aa, and to Bacillus subtilis YrhO TR:O05405 (EMBL:U93874) (275 aa) fasta scores: E(): 4.8e-13, 25.704% id in 284 aa.


ensembl_gene_id: BP0925
symbol: BP0925
gene_biotype: protein_coding
description:
  Putative fumarylacetoacetate-family hydrolase; Similar to Homo sapiens unknown TR:AAH09403 (EMBL:BC009403) (314 aa) fasta scores: E(): 1.5e-30, 41.702% id in 235 aa, and to naphthalenesulfonate-degrading bacterium BN6 homolog to 2-hydroxyhepta-2 TR:Q50913 (EMBL:U38978) (144 aa) fasta scores: E(): 2.1e-31, 58.451% id in 142 aa.


ensembl_gene_id: BP0926
symbol: BP0926
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa1213 TR:Q9I4C5 (EMBL:AE004551) (319 aa) fasta scores: E(): 2.2e-14, 30.556% id in 288 aa.


ensembl_gene_id: BP0927
symbol: BP0927
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni Orf4 protein TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 2.6e-40, 36.977% id in 311 aa, and to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 9.2e-39, 35.647% id in 317 aa.


ensembl_gene_id: BP0928
symbol: BP0928
gene_biotype: protein_coding
description:
  Similar to alpha proteobacterium Y3F LysR-type transcriptional regulator PcaQ TR:Q9L5A8 (EMBL:AF253466) (308 aa) fasta scores: E(): 5.8e-19, 30.293% id in 307 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa2206 TR:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: E(): 5.6e-22, 31.707% id in 287 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0929
symbol: BP0929
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Helicobacter pylori J99 putative Jhp0345 TR:Q9ZM77 (EMBL:AE001470) (189 aa) fasta scores: E(): 0.02, 22.527% id in 182 aa, and to Streptomyces coelicolor putative membrane protein Sc5e9.11 TR:Q9EWM6 (EMBL:AL446003) (233 aa) fasta scores: E(): 0.15, 28.333% id in 180 aa.


ensembl_gene_id: BP0930
symbol: BP0930
gene_biotype: protein_coding
description:
  Putative CoA ligase; Similar to Pseudomonas diterpeniphila coenzyme A ligase TdtL TR:AAK95584 (EMBL:AF274704) (543 aa) fasta scores: E(): 7.2e-54, 33.333% id in 546 aa, and to Escherichia coli probable crotonobetaine/carnitine-CoA ligase CaiC or B0037 SW:CAIC_ECOLI (P31552) (522 aa) fasta scores: E(): 1.7e-38, 29.039% id in 489 aa.


ensembl_gene_id: BP0931
symbol: BP0931
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Burkholderia cepacia hypothetical 35.5 kDa protein TR:AAK81675 (EMBL:AF029344) (337 aa) fasta scores: E(): 5.3e-24, 33.779% id in 299 aa, and to Comamonas testosteroni Orf4 protein TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 3e-25, 33.750% id in 320 aa.


ensembl_gene_id: BP0932
symbol: BP0932
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Methanothermobacter thermautotrophicus conserved protein Mth1398 TR:O27449 (EMBL:AE000902) (133 aa) fasta scores: E(): 1.1e-07, 35.398% id in 113 aa, and to Archaeoglobus fulgidus conserved hypothetical protein Af2417 TR:O30254 (EMBL:AE001108) (122 aa) fasta scores: E(): 2.2e-07, 37.349% id in 83 aa.


ensembl_gene_id: BP0934
symbol: BP0934
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); TCTG in pertussis; (-) deleted in parapertussis and bronchiseptica.


ensembl_gene_id: BP0935
symbol: BP0935
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1e-39, 39.264% id in 326 aa, and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 9.5e-39, 38.509% id in 322 aa.


ensembl_gene_id: BP0936
symbol: BP0936
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Caulobacter crescentus isoleucine biosynthesis transcriptional activator IlvR or Cc3045 SW:ILVR_CAUCR (P52670) (296 aa) fasta scores: E(): 1.2e-22, 37.091% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa1826 TR:Q9I2R9 (EMBL:AE004609) (301 aa) fasta scores: E(): 5.1e-28, 39.373% id in 287 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0937
symbol: BP0937
gene_biotype: protein_coding
description:
  Phage-related protein; Similar to Bacteriophage HP1 hypothetical 14.9 kDa protein in rep-hol intergenic region SW:YO14_BPHP1 (P51716) (133 aa) fasta scores: E(): 5.6e-11, 37.795% id in 127 aa, and to Haemophilus influenzae phage HP2 Orf14 TR:AAK37796 (EMBL:AY027935) (133 aa) fasta scores: E(): 5.6e-11, 37.795% id in 127 aa.


ensembl_gene_id: BP0939
symbol: BP0939
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Msr2149 protein Msr2149 TR:Q98J18 (EMBL:AP002999) (62 aa) fasta scores: E(): 2.3e-09, 51.667% id in 60 aa, and to Rhizobium meliloti hypothetical protein Smc04441 TR:CAC46618 (EMBL:AL591789) (62 aa) fasta scores: E(): 8.8e-09, 50.000% id in 60 aa.


ensembl_gene_id: BP0940
symbol: BP0940
gene_biotype: protein_coding
description:
  Similar to Erwinia chrysanthemi sugar efflux transpoter SotB TR:Q9S3J9 (EMBL:AJ249181) (395 aa) fasta scores: E(): 1.7e-30, 31.967% id in 366 aa, and to Pseudomonas aeruginosa probable Mfs transporter pa2933 TR:Q9HZR4 (EMBL:AE004719) (392 aa) fasta scores: E(): 1e-82, 64.541% id in 392 aa.


ensembl_gene_id: BP0941
symbol: BP0941
gene_biotype: protein_coding
description:
  Similar to Alcaligenes eutrophus phosphoglycolate phosphatase, chromosomal CbbzC SW:GPHC_ALCEU (P40852) (231 aa) fasta scores: E(): 2.9e-17, 36.316% id in 190 aa, and to Neisseria meningitidis putative phosphatase Nma0828 TR:Q9JVI3 (EMBL:AL162754) (220 aa) fasta scores: E(): 8.7e-29, 40.278% id in 216 aa.


ensembl_gene_id: BP0942
symbol: ubiG
gene_biotype: protein_coding
description:
  3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: BP0943
symbol: ompA
gene_biotype: protein_coding
description:
  Highly similar to Bordetella avium outer membrane protein A precursor OmpA SW:OMPA_BORAV (Q05146) (194 aa) fasta scores: E(): 5.7e-67, 91.753% id in 194 aa, and to Bordetella petrii OmpA protein OmpA TR:Q9S3M1 (EMBL:AJ242599) (152 aa) fasta scores: E(): 5.1e-49, 88.079% id in 151 aa.


ensembl_gene_id: BP0944
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: BP0945
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: BP0946
symbol: pheA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli P-protein [includes: chorismate mutase and prephenate dehydratase] PheA or B2599 or Z3891 or Ecs3462 SW:PHEA_ECOLI (P07022) (386 aa) fasta scores: E(): 4.9e-27, 33.773% id in 379 aa, and to Neisseria meningitidis chorismate mutase/prephenate dehydratase nmb0446 TR:Q9K0W1 (EMBL:AE002401) (362 aa) fasta scores: E(): 3.3e-66, 50.276% id in 362 aa.


ensembl_gene_id: BP0947
symbol: tyrA
gene_biotype: protein_coding
description:
  Similar to Bordetella bronchiseptica prephenate dehydrogenase TyrA TR:Q9RND8 (EMBL:AF182427) (299 aa) fasta scores: E(): 4.1e-108, 99.331% id in 299 aa, and to Rhizobium meliloti putative cyclohexadienyl dehydrogenase and adh prephenate dehydrogenase protein TR:CAC47240 (EMBL:AL591791) (307 aa) fasta scores: E(): 1.2e-33, 43.110% id in 283 aa.


ensembl_gene_id: BP0948
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: BP0949
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; Similar to Escherichia coli cytidylate kinase Cmk or MssA or B0910 or Z1256 or Ecs0993 SW:KCY_ECOLI (P23863) (227 aa) fasta scores: E(): 8.1e-40, 57.674% id in 215 aa, and identical to Bordetella bronchiseptica cytidylate kinase Cmk SW:KCY_BORBR (Q9RND6) (223 aa) fasta scores: E(): 1.5e-79, 98.655% id in 223 aa.


ensembl_gene_id: BP0950
symbol: rpsA
gene_biotype: protein_coding
description:
  30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: BP0951
symbol: ihfB
gene_biotype: protein_coding
description:
  Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: BP0952
symbol: BP0952
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis putative inner membrane hypothetical protein Nma2149 TR:Q9JST1 (EMBL:AL162758) (104 aa) fasta scores: E(): 0.0012, 33.981% id in 103 aa, and to Bacillus halodurans Bh1239 protein Bh1239 TR:Q9KDH4 (EMBL:AP001511) (105 aa) fasta scores: E(): 7.1, 27.059% id in 85 aa.


ensembl_gene_id: BP0953
symbol: lapB
gene_biotype: protein_coding
description:
  Putative membrane protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.


ensembl_gene_id: BP0954
symbol: rfaE
gene_biotype: protein_coding
description:
  ADP-heptose synthase; Similar to Salmonella typhimurium ADP-heptose synthase RfaE TR:Q9AJ74 (EMBL:AF155126) (477 aa) fasta scores: E(): 7.1e-50, 52.508% id in 299 aa, and to Burkholderia pseudomallei putative ADP-heptose synthase WaaE TR:Q9WWX7 (EMBL:AF159428) (307 aa) fasta scores: E(): 6.6e-59, 59.603% id in 302 aa.


ensembl_gene_id: BP0955
symbol: rfaD
gene_biotype: protein_coding
description:
  ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose.


ensembl_gene_id: BP0956
symbol: BP0956
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Neisseria gonorrhoeae ComE TR:Q9EU10 (EMBL:AF268317) (99 aa) fasta scores: E(): 0.0033, 35.714% id in 84 aa, and to Xylella fastidiosa hypothetical protein Xf0593 xf0593 TR:Q9PFR4 (EMBL:AE003905) (109 aa) fasta scores: E(): 0.07, 34.524% id in 84 aa.


ensembl_gene_id: BP0958
symbol: cysM
gene_biotype: protein_coding
description:
  Cysteine synthase B; Similar to Escherichia coli cysteine synthase B CysM or B2421 SW:CYSM_ECOLI (P16703) (303 aa) fasta scores: E(): 7.7e-67, 64.407% id in 295 aa, and to Pseudomonas aeruginosa cysteine synthase B CysM or Pa0932 TR:Q9I526 (EMBL:AE004527) (299 aa) fasta scores: E(): 2.2e-72, 67.442% id in 301 aa; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: BP0959
symbol: mltB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli membrane-bound lytic murein transglycosylase B precursor MltB or B2701 SW:MLTB_ECOLI (P41052) (361 aa) fasta scores: E(): 4.8e-28, 35.696% id in 381 aa, and to Pseudomonas aeruginosa membrane-bound lytic transglycosylase precursor MltB TR:Q9X6V5 (EMBL:AF147448) (336 aa) fasta scores: E(): 5.8e-29, 39.172% id in 314 aa.


ensembl_gene_id: BP0960
symbol: BP0960
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis histone deacetylase family protein Nmb0605 TR:Q9K0J2 (EMBL:AE002416) (369 aa) fasta scores: E(): 2.4e-50, 44.156% id in 308 aa, and to Rhizobium meliloti conserved hypothetical protein Smc00969 TR:CAC45455 (EMBL:AL591785) (309 aa) fasta scores: E(): 9.7e-49, 45.192% id in 312 aa.


ensembl_gene_id: BP0961
symbol: etfB
gene_biotype: protein_coding
description:
  Similar to Bradyrhizobium japonicum electron transfer flavoprotein beta-subunit EtfB or EtfS SW:ETFB_BRAJA (P53575) (249 aa) fasta scores: E(): 9.4e-59, 69.076% id in 249 aa, and to Pseudomonas aeruginosa electron transfer flavoprotein beta-subunit EtfB or Pa2952 TR:Q9HZP6 (EMBL:AE004721) (249 aa) fasta scores: E(): 3.5e-62, 74.297% id in 249 aa.


ensembl_gene_id: BP0962
symbol: etfA
gene_biotype: protein_coding
description:
  Similar to Bradyrhizobium japonicum electron transfer flavoprotein alpha-subunit EtfA or EtfL SW:ETFA_BRAJA (P53573) (314 aa) fasta scores: E(): 4.3e-64, 68.065% id in 310 aa, and to Pseudomonas aeruginosa electron transfer flavoprotein alpha-subunit EtfA or Pa2951 TR:Q9HZP7 (EMBL:AE004721) (309 aa) fasta scores: E(): 2.5e-67, 70.550% id in 309 aa.


ensembl_gene_id: BP0964
symbol: BP0964
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti probable acyl-CoA dehydrogenase Mlr6975 TR:Q987P3 (EMBL:AP003010) (583 aa) fasta scores: E(): 2.9e-96, 50.984% id in 610 aa, and to Rhizobium meliloti putative acyl-CoA dehydrogenase protein Smc00977 TR:CAC45447 (EMBL:AL591785) (593 aa) fasta scores: E(): 1.2e-95, 48.571% id in 595 aa.


ensembl_gene_id: BP0965
symbol: BP0965
gene_biotype: protein_coding
description:
  Similar to Mus musculus antioxidant protein 2 Aop2 or Ltw4 or Prdx5 SW:AOP2_MOUSE (O08709) (223 aa) fasta scores: E(): 1.3e-42, 55.605% id in 223 aa, and to Pseudomonas aeruginosa probable antioxidant protein Pa3450 TR:Q9HYF6 (EMBL:AE004765) (212 aa) fasta scores: E(): 6.9e-68, 79.048% id in 210 aa.


ensembl_gene_id: BP0966
symbol: sbp
gene_biotype: protein_coding
description:
  Similar to Escherichia coli sulfate-binding protein precursor Sbp or B3917 SW:SUBI_ECOLI (P06997) (329 aa) fasta scores: E(): 3.5e-85, 67.732% id in 313 aa, and to Enterobacter cloacae putative sulfur-binding protein SbP TR:Q9Z6C2 (EMBL:AF098509) (329 aa) fasta scores: E(): 5.5e-87, 68.889% id in 315 aa.


ensembl_gene_id: BP0969
symbol: cysA
gene_biotype: protein_coding
description:
  Sulfate transport system permease protein (Pseudogene); Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: BP0970A
symbol: cysD
gene_biotype: protein_coding
description:
  Phosphoadenosine phosphosulfate reductase (Pseudogene); (C)1 in pertussis; (C)2 in parapertussis and bronchiseptica.


ensembl_gene_id: BP0972
symbol: cysN
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase subunit 1 (Pseudogene); 57 bp deletion in pertussis relative to parapertussis and bronchiseptica following this codon.


ensembl_gene_id: BP0974
symbol: BP0974
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Streptomyces coelicolor putative integral membrane protein Sce87.15C TR:Q9RKC3 (EMBL:AL132674) (281 aa) fasta scores: E(): 4.3e-14, 29.537% id in 281 aa, and to Rhizobium loti Mll3062 protein Mll3062 TR:Q98H24 (EMBL:AP003001) (281 aa) fasta scores: E(): 1.9e-18, 31.849% id in 292 aa.


ensembl_gene_id: BP0975
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: BP0976
symbol: BP0976
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Caulobacter crescentus MutT/NudiX family protein Cc0407 TR:Q9AB27 (EMBL:AE005713) (216 aa) fasta scores: E(): 6.1e-27, 47.959% id in 196 aa, and to Rhizobium loti Mll2727 protein mll2727 TR:Q98HS8 (EMBL:AP003000) (204 aa) fasta scores: E(): 4e-24, 42.640% id in 197 aa.


ensembl_gene_id: BP0977
symbol: BP0977
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable oxidoreductase Pa4434 TR:Q9HVY1 (EMBL:AE004857) (345 aa) fasta scores: E(): 1.1e-83, 61.318% id in 349 aa, and to Vibrio cholerae oxidoreductase Tas, aldo/keto reductase family Vc0667 TR:Q9KU57 (EMBL:AE004153) (352 aa) fasta scores: E(): 1.6e-81, 60.172% id in 349 aa.


ensembl_gene_id: BP0981
symbol: ubiC
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.


ensembl_gene_id: BP0982
symbol: BP0982
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus RNA pseudouridylate synthase, putative Cc0855 TR:Q9A9V6 (EMBL:AE005762) (255 aa) fasta scores: E(): 5.2e-38, 49.587% id in 242 aa, and to Neisseria meningitidis putative RNA-binding protein Nma1016 TR:Q9JV32 (EMBL:AL162754) (252 aa) fasta scores: E(): 1e-57, 66.116% id in 242 aa; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: BP0983
symbol: BP0983
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative LysR-family transcriptional regulator Sma1602 TR:AAK65531 (EMBL:AE007274) (302 aa) fasta scores: E(): 3.4e-51, 51.020% id in 294 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa3135 TR:Q9HZ90 (EMBL:AE004737) (306 aa) fasta scores: E(): 4.3e-30, 39.322% id in 295 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP0985
symbol: acrB
gene_biotype: protein_coding
description:
  Acriflavine resistance protein a precursor (Pseudogene); Large deletion in pertussis relative to parapertussis and bronchiseptica following this codon.


ensembl_gene_id: BP0986
symbol: cusC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli probable outer membrane lipoprotein CusC precursor CusC or IbeB or B0572 SW:CUSC_ECOLI (P77211) (457 aa) fasta scores: E(): 4.9e-38, 39.655% id in 464 aa, and to Pseudomonas aeruginosa outer membrane protein OprM precursor OprM or OprK or Pa0427 SW:OPRM_PSEAE (Q51487) (485 aa) fasta scores: E(): 5.3e-67, 55.717% id in 481 aa.


ensembl_gene_id: BP0987
symbol: BP0987
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical protein Sma1766 TR:AAK65633 (EMBL:AE007284) (83 aa) fasta scores: E(): 3.7e-12, 52.439% id in 82 aa, and to Pseudomonas aeruginosa hypothetical protein Pa5424 TR:Q9HTE0 (EMBL:AE004955) (81 aa) fasta scores: E(): 2.6e-11, 51.250% id in 80 aa.


ensembl_gene_id: BP0988
symbol: BP0988
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Neisseria meningitidis putative lipoprotein Nma1767 TR:Q9JTI0 (EMBL:AL162757) (217 aa) fasta scores: E(): 1.6e-19, 39.490% id in 157 aa, and to Caulobacter crescentus Sco1/2 family protein Cc3503 TR:Q9A2Q3 (EMBL:AE006008) (190 aa) fasta scores: E(): 6.8e-18, 37.173% id in 191 aa.


ensembl_gene_id: BP0989
symbol: prlC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli oligopeptidase A PrlC or OpdA or B3498 SW:OPDA_ECOLI (P27298) (680 aa) fasta scores: E(): 7.2e-123, 46.009% id in 689 aa, and to Xylella fastidiosa oligopeptidase A Xf0127 TR:Q9PH19 (EMBL:AE003866) (674 aa) fasta scores: E(): 2.1e-134, 54.839% id in 682 aa.


ensembl_gene_id: BP0990
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: BP0991
symbol: BP0991
gene_biotype: protein_coding
description:
  Two-component response regulator; Similar to Bradyrhizobium japonicum transcriptional regulatory protein FixJ SW:FIXJ_BRAJA (P23221) (205 aa) fasta scores: E(): 3e-26, 41.146% id in 192 aa, and to Pseudomonas sp transcriptional activator StdR TR:O50213 (EMBL:AF031161) (207 aa) fasta scores: E(): 1.2e-27, 47.644% id in 191 aa.


ensembl_gene_id: BP0992
symbol: BP0992
gene_biotype: protein_coding
description:
  Tw-component sensor kinase; Similar to Azorhizobium caulinodans sensor protein FixL SW:FIXL_AZOCA (P26489) (504 aa) fasta scores: E(): 1.7e-37, 47.893% id in 261 aa, and to Caulobacter crescentus sensory box histidine kinase FixL Cc0759 TR:Q9AA47 (EMBL:AE005751) (504 aa) fasta scores: E(): 2.4e-35, 45.059% id in 253 aa.


ensembl_gene_id: BP0993
symbol: aceE
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: BP0994
symbol: aceF
gene_biotype: protein_coding
description:
  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: BP0995
symbol: lpdA-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli dihydrolipoamide dehydrogenase LpdA or Lpd or B0116 or Z0126 or ecs0120 SW:DLDH_ECOLI (P00391) (473 aa) fasta scores: E(): 7.8e-97, 63.713% id in 474 aa, and to Alcaligenes eutrophus dihydrolipoamide dehydrogenase PdhL TR:Q59099 (EMBL:U09865) (594 aa) fasta scores: E(): 4.8e-147, 75.541% id in 601 aa.


ensembl_gene_id: BP0996
symbol: flaA
gene_biotype: protein_coding
description:
  Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: BP0998
symbol: BP0998
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: BP0999
symbol: tktA
gene_biotype: protein_coding
description:
  Transketolase 1; Similar to Escherichia coli transketolase 1 TktA or Tkt or B2935 SW:TKT1_ECOLI (P27302) (663 aa) fasta scores: E(): 5.7e-137, 63.433% id in 670 aa, and to Pasteurella multocida transketolase 1 TktA or Pm1242 SW:TKT1_PASMU (P57927) (668 aa) fasta scores: E(): 3e-158, 61.504% id in 678 aa; Belongs to the transketolase family.


ensembl_gene_id: BP1000
symbol: gap
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa glyceraldehyde 3-phosphate dehydrogenase Gap or HexC or pa3195 SWALL:G3P_PSEAE (SWALL:P27726) (334 aa) fasta scores: E(): 9.1e-84, 66.07% id in 336 aa, and to Alcaligenes eutrophus glyceraldehyde 3-phosphate dehydrogenase, plasmid cbbgP SWALL:G3PP_ALCEU (SWALL:P50322) (336 aa) fasta scores: E(): 1.1e-107, 84.52% id in 336 aa; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: BP1001
symbol: pgk
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphoglycerate kinase Pgk or B2926 SW:PGK_ECOLI (P11665) (386 aa) fasta scores: E(): 6.3e-83, 64.042% id in 381 aa, and to Alcaligenes eutrophus phosphoglycerate kinase, chromosomal CbbkC SW:PGKC_ALCEU (P50319) (413 aa) fasta scores: E(): 1.8e-103, 75.381% id in 394 aa.


ensembl_gene_id: BP1002
symbol: fabI
gene_biotype: protein_coding
description:
  Similar to Escherichia coli, and enoyl-[acyl-carrier-protein] reductase [NADH] FabI or EnvM or B1288 or Z2512 or Ecs1861 SW:FABI_ECOLI (P29132) (261 aa) fasta scores: E(): 1.1e-35, 41.200% id in 250 aa, and to Rhizobium meliloti putative enoyl-acyl-carrier-protein reductase NADH TR:CAC41683 (EMBL:AL591783) (268 aa) fasta scores: E(): 3e-40, 44.578% id in 249 aa.


ensembl_gene_id: BP1003
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: BP1004
symbol: BP1004
gene_biotype: protein_coding
description:
  Similar to Clostridium beijerinckii phosphate butyryltransferase Ptb SW:PTB_CLOBE (Q05624) (302 aa) fasta scores: E(): 2.3e-39, 40.339% id in 295 aa, and to Rhizobium meliloti phosphate acetyltransferase Pta SW:PTA_RHIME (Q9X448) (316 aa) fasta scores: E(): 1.4e-76, 71.661% id in 307 aa.


ensembl_gene_id: BP1005
symbol: BP1005
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical 80.6 kDa protein in ackA 5'region SW:YACK_RHIME (Q9X447) (733 aa) fasta scores: E(): 4.3e-155, 56.428% id in 739 aa.


ensembl_gene_id: BP1006
symbol: BP1006
gene_biotype: protein_coding
description:
  Probable glutathione S-transferase; Similar to Escherichia coli hypothetical Gst-like protein YfcF or B2301 SW:YFCF_ECOLI (P77544) (214 aa) fasta scores: E(): 1e-33, 52.683% id in 205 aa, and to Pseudomonas aeruginosa probable glutathione S-transferase Pa4401 TR:Q9HW05 (EMBL:AE004855) (211 aa) fasta scores: E(): 5.6e-08, 31.905% id in 210 aa.


ensembl_gene_id: BP1010
symbol: BP1010
gene_biotype: protein_coding
description:
  Putative acetyltransferase; Similar to Synechocystis sp hypothetical 19.4 kDa protein Slr1340 TR:P74076 (EMBL:D90912) (178 aa) fasta scores: E(): 9.8e-35, 55.346% id in 159 aa, and to Anabaena sp putative acetyltransferase TR:Q9KHE3 (EMBL:AF262218) (164 aa) fasta scores: E(): 2.3e-07, 31.111% id in 135 aa.


ensembl_gene_id: BP1011
symbol: cbpA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli curved DNA-binding protein CbpA or B1000 SW:CBPA_ECOLI (P36659) (306 aa) fasta scores: E(): 2.9e-26, 41.772% id in 316 aa, and to Caulobacter crescentus DnaJ family protein cc2772 TR:Q9A4Q8 (EMBL:AE005942) (314 aa) fasta scores: E(): 4.2e-31, 41.742% id in 333 aa.


ensembl_gene_id: BP1012
symbol: BP1012
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Thermus thermophilus dnaK operon DafA TR:P77527 (EMBL:Y07826) (78 aa) fasta scores: E(): 0.93, 38.776% id in 49 aa, and to Rhizobium meliloti hypothetical 13.0 kDa protein Sma0117 TR:AAK64718 (EMBL:AE007200) (112 aa) fasta scores: E(): 0.48, 39.706% id in 68 aa.


ensembl_gene_id: BP1014
symbol: pitA
gene_biotype: protein_coding
description:
  Putative membrane protein (pseudogene); 8 probable transmembrane helices predicted for BP1013 by TMHMM2.0 at aa 24-46, 51-73, 77-99, 139-161, 171-188, 200-222, 247-269 and 290-312.


ensembl_gene_id: BP1015
symbol: mog
gene_biotype: protein_coding
description:
  Similar to Escherichia coli molybdopterin biosynthesis Mog protein Mog or MogA or ChlG or B0009 or Z0009 or Ecs0009 SW:MOG_ECOLI (P28694) (195 aa) fasta scores: E(): 4e-47, 68.557% id in 194 aa, and to Haemophilus influenzae molybdopterin biosynthesis Mog protein Mog or MogA or Hi0336 SW:MOG_HAEIN (P44645) (197 aa) fasta scores: E(): 8e-45, 65.803% id in 193 aa.


ensembl_gene_id: BP1016
symbol: BP1016
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2759 TR:Q9I084 (EMBL:AE004704) (104 aa) fasta scores: E(): 1.1, 27.027% id in 111 aa.


ensembl_gene_id: BP1017
symbol: BP1017
gene_biotype: protein_coding
description:
  Putative peptidase; Similar to Pseudomonas aeruginosa hypothetical protein Pa3787 TR:Q9HXK8 (EMBL:AE004797) (282 aa) fasta scores: E(): 1.9e-72, 68.978% id in 274 aa, and to Xylella fastidiosa hypothetical protein Xf0987 TR:Q9PEP1 (EMBL:AE003937) (285 aa) fasta scores: E(): 5.5e-25, 38.462% id in 247 aa.


ensembl_gene_id: BP1019
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: BP1021
symbol: fliA
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.


ensembl_gene_id: BP1022
symbol: flhD
gene_biotype: protein_coding
description:
  Flagellar transcriptional activator FlbB; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family.


ensembl_gene_id: BP1023
symbol: flhC
gene_biotype: protein_coding
description:
  Flagellar transcriptional activator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family.


ensembl_gene_id: BP1024
symbol: motA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli chemotaxis MotA protein MotA or B1890 SW:MOTA_ECOLI (P09348) (295 aa) fasta scores: E(): 2.9e-60, 55.439% id in 285 aa, and to Salmonella typhimurium chemotaxis MotA protein MotA SW:MOTA_SALTY (P55891) (295 aa) fasta scores: E(): 9e-63, 56.842% id in 285 aa.


ensembl_gene_id: BP1025
symbol: motB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli chemotaxis MotB protein MotB or B1889 or Z2943 or Ecs2599 SW:MOTB_ECOLI (P09349) (308 aa) fasta scores: E(): 8.5e-54, 57.500% id in 280 aa, and to Salmonella typhimurium chemotaxis MotB protein MotB SW:MOTB_SALTY (P55892) (309 aa) fasta scores: E(): 9.8e-54, 58.156% id in 282 aa.


ensembl_gene_id: BP1029
symbol: cheW
gene_biotype: protein_coding
description:
  Similar to Escherichia coli chemotaxis protein CheW or B1887 or Z2941 or Ecs2597 SW:CHEW_ECOLI (P07365) (167 aa) fasta scores: E(): 1.3e-41, 74.83% id in 155 aa, and to Burkholderia pseudomallei (Pseudomonas pseudomallei) chemotaxis protein CheW TR:O05183 (EMBL:U92493) (175 aa) fasta scores: E(): 7e-43, 72.56% id in 164 aa.


ensembl_gene_id: BP1030
symbol: tsr
gene_biotype: protein_coding
description:
  Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 3e-64, 46.71% id in 533 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein II TaR SW:MCP2_SALTY (P02941) (553 aa) fasta scores: E(): 1.2e-63, 45.87% id in 558 aa. Also similar to BP1384 (64.476% identity in 563 aa overlap), BP1385 (61.649% identity in 558 aa overlap), BP2268 (56.415% identity in 491 aa overlap), and to BP1591 (44.216% identity in 536 aa overlap).


ensembl_gene_id: BP1032
symbol: cheB
gene_biotype: protein_coding
description:
  Chemotaxis protein methyltransferase (Pseudogene); Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: BP1033
symbol: cheY
gene_biotype: protein_coding
description:
  Similar to Escherichia coli chemotaxis protein CheY or B1882 or Z2936 or Ecs2592 TR:AAG56872 (EMBL:K02175) (129 aa) fasta scores: E(): 5.1e-36, 78.73% id in 127 aa, and to Burkholderia pseudomallei (Pseudomonas pseudomallei) CheY TR:P94342 (EMBL:U78087) (131 aa) fasta scores: E(): 1.9e-37, 80.31% id in 127 aa.


ensembl_gene_id: BP1034
symbol: cheZ
gene_biotype: protein_coding
description:
  Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).


ensembl_gene_id: BP1035
symbol: BP1035
gene_biotype: protein_coding
description:
  Transposase for IS1663; Similar to Neisseria meningitidis putative invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and Acinetobacter spSE19 pilin inverting protein ChnY TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): 8.2e-50, 47.516% id in 322 aa.


ensembl_gene_id: BP1036
symbol: BP1036
gene_biotype: protein_coding
description:
  Putative aldo/keto reductase; Similar to Rhizobium meliloti putative aldoketo reductase protein Smb20500 TR:CAC48882 (EMBL:AL603643) (331 aa) fasta scores: E(): 7.8e-35, 39.26% id in 326 aa, and to Agrobacterium tumefaciens Agr_l_1936p TR:AAK89542 (EMBL:AE008296) (332 aa) fasta scores: E(): 2e-31, 36.44% id in 332 aa.


ensembl_gene_id: BP1038
symbol: corC
gene_biotype: protein_coding
description:
  Putative apolipoprotein N-acyltransferase (Pseudogene); A in pertussis; (-) deleted in parapertussis and bronchiseptica.


ensembl_gene_id: BP1039
symbol: ybeY
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: BP1040
symbol: BP1040
gene_biotype: protein_coding
description:
  PhoH-like protein; Similar to Escherichia coli PhoH-like protein YbeZ or B0660 or Z0809 or Ecs0698 SW:PHOL_ECOLI (P77349) (359 aa) fasta scores: E(): 2.6e-60, 54.74% id in 316 aa, and to Salmonella typhimurium YbeZ protein TR:Q9RCI1 (EMBL:AJ249116) (361 aa) fasta scores: E(): 1.8e-60, 52.94% id in 340 aa.


ensembl_gene_id: BP1041
symbol: miaB
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: BP1045
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: BP1047
symbol: yajC
gene_biotype: protein_coding
description:
  Putative secreted protein; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: BP1049
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: BP1050
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: BP1051
symbol: BP1051
gene_biotype: protein_coding
description:
  Probable D-alanyl-D-alanine carboxypeptidase; Similar to Escherichia coli penicillin-binding protein 4 precursor DacB or B3182 SW:PBP4_ECOLI (P24228) (477 aa) fasta scores: E(): 2.5e-21, 29.19% id in 435 aa, and to Pseudomonas aeruginosa probable D-alanyl-D-alanine carboxypeptidase Pa3047 TR:Q9HZG1 (EMBL:AE004729) (476 aa) fasta scores: E(): 4.4e-57, 40.21% id in 470 aa.


ensembl_gene_id: BP1052
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: BP1053
symbol: BP1053
gene_biotype: protein_coding
description:
  Transposase for IS1663; Similar to Neisseria meningitidis putative invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and Acinetobacter spSE19. pilin inverting protein ChnY TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): 8.2e-50, 47.516% id in 322 aa.


ensembl_gene_id: BP1054
symbol: prn
gene_biotype: protein_coding
description:
  Pertactin precursor; Agglutinogen that binds to eukaryotic cells; a process mediated by the R-G-D sequence. Pertactin may have a role in bacterial adhesion, and thus play a role in virulence. May contribute to the disease state of whooping cough.


ensembl_gene_id: BP1055
symbol: cysG
gene_biotype: protein_coding
description:
  Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.


ensembl_gene_id: BP1056
symbol: BP1056
gene_biotype: protein_coding
description:
  Putative membrane protein; Weakly similar to Bacteriophage Mx8 p64 TR:AAK94399 (EMBL:AF396866) (357 aa) fasta scores: E(): 6.6, 25.54% id in 137 aa.


ensembl_gene_id: BP1057
symbol: BP1057
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Escherichia coli ElaB protein ElaB or B2266 or Z3526 or Ecs3154 SW:ELAB_ECOLI (P52084) (101 aa) fasta scores: E(): 1.1e-06, 35.86% id in 92 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3040 TR:Q9HZG8 (EMBL:AE004729) (109 aa) fasta scores: E(): 5.6e-10, 39.45% id in 109 aa.


ensembl_gene_id: BP1058
symbol: BP1058
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3041 TR:Q9HZG7 (EMBL:AE004729) (126 aa) fasta scores: E(): 0.00021, 34.48% id in 116 aa.


ensembl_gene_id: BP1059
symbol: BP1059
gene_biotype: protein_coding
description:
  Hypothetical protein; Weakly similar to Synechocystis sp hypothetical 23.9 kDa protein Slr1949 TR:P74511 (EMBL:D90915) (212 aa) fasta scores: E(): 8.6, 22.85% id in 140 aa.


ensembl_gene_id: BP1060
symbol: ubiD
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.


ensembl_gene_id: BP1061
symbol: BP1061
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis putative transglycosylase Nma1674 TR:Q9JTQ7 (EMBL:AL162756) (207 aa) fasta scores: E(): 0.017, 30.05% id in 193 aa, and to Caulobacter crescentus transglycosylase, putative Cc2416 TR:Q9A5N1 (EMBL:AE005911) (218 aa) fasta scores: E(): 0.034, 31.32% id in 166 aa.


ensembl_gene_id: BP1062
symbol: BP1062
gene_biotype: protein_coding
description:
  Probable aminotransferase; Similar to Thermus aquaticus aspartate aminotransferase AspC SW:AAT_THETH (Q56232) (385 aa) fasta scores: E(): 9.9e-32, 34.27% id in 388 aa, and to Pseudomonas aeruginosa probable aminotransferase Pa4722 TR:Q9HV76 (EMBL:AE004885) (390 aa) fasta scores: E(): 7e-65, 47.89% id in 380 aa.


ensembl_gene_id: BP1063
symbol: BP1063
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Mycobacterium tuberculosis hypothetical 27.6 kDa protein Rv1249c or Mtv006.21C TR:O50464 (EMBL:AL021006) (262 aa) fasta scores: E(): 0.28, 33.92% id in 168 aa, and to Streptomyces coelicolor hypothetical 37.5 kDa protein Scbac19f3.03C TR:CAC44326 (EMBL:AL596102) (377 aa) fasta scores: E(): 4, 28.98% id in 314 aa.


ensembl_gene_id: BP1064
symbol: maeB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli NADP-dependent malic enzyme Maeb or B2463 SW:MAO2_ECOLI (P76558) (759 aa) fasta scores: E(): 1.3e-173, 59.81% id in 759 aa, and to Haemophilus influenzae NADP-dependent malic enzyme MaeB or hi1245 SW:MAO2_HAEIN (P43837) (756 aa) fasta scores: E(): 3.1e-168, 58.1% id in 759 aa. Almost identical to BP3456 (97.082% identity in 754 aa overlap), and highly similar to BP1120 (63.900% identity in 759 aa overlap).


ensembl_gene_id: BP1066
symbol: BP1066
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); (G)4 in pertussis; GG(A)GG in parapertussis and bronchiseptica.


ensembl_gene_id: BP1068
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate transport ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: BP1069
symbol: pstA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphate transport system permease protein PstA or PhoT or B3726 SW:PSTA_ECOLI (P07654) (296 aa) fasta scores: E(): 1.8e-60, 58.45% id in 272 aa, and to Pasteurella multocida PstA or Pm0434 TR:Q9CNJ6 (EMBL:AE006079) (280 aa) fasta scores: E(): 7.7e-74, 72% id in 275 aa.


ensembl_gene_id: BP1070
symbol: pstC
gene_biotype: protein_coding
description:
  Phosphate transport system permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: BP1071
symbol: pstS
gene_biotype: protein_coding
description:
  Phosphate-binding periplasmic protein precursor; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: BP1072
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: BP1073
symbol: ppx
gene_biotype: protein_coding
description:
  Exopolyphosphatase; Similar to Escherichia coli, and exopolyphosphatase Ppx or B2502 or Z3765 or Ecs3364 SW:PPX_ECOLI (P29014) (512 aa) fasta scores: E(): 1.8e-68, 40.88% id in 499 aa, and to Neisseria meningitidis exopolyphosphatase Nmb1467 TR:Q9JYR3 (EMBL:AE002496) (502 aa) fasta scores: E(): 1.2e-86, 47.18% id in 498 aa.


ensembl_gene_id: BP1074
symbol: BP1074
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Streptomyces coelicolor hypothetical 28.0 kDa protein Scm10.09C TR:Q9RCY9 (EMBL:AL133469) (256 aa) fasta scores: E(): 7.9e-44, 50% id in 250 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4350 TR:Q9HW51 (EMBL:AE004851) (251 aa) fasta scores: E(): 2.3e-37, 43.9% id in 246 aa.


ensembl_gene_id: BP1075
symbol: mrsA
gene_biotype: protein_coding
description:
  Phosphoglucomutase/phosphomannomutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: BP1076
symbol: folP
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: BP1077
symbol: ftsH
gene_biotype: protein_coding
description:
  Cell division protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: BP1078
symbol: rrmJ
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase j; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: BP1079
symbol: BP1079
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Its N-terminal region is similar to Neisseria meningitidis hypothetical protein Nmb0800 TR:Q9K026 (EMBL:AE002433) (94 aa) fasta scores: E(): 2.7e-09, 47.87% id in 94 aa, and to Escherichia coli hypothetical protein YhbY or B3180 or Z4542 or Ecs4059 SW:YHBY_ECOLI (P42550) (97 aa) fasta scores: E(): 1.1e-07, 46.59% id in 88 aa.


ensembl_gene_id: BP1083
symbol: BP1083
gene_biotype: protein_coding
description:
  C-terminal region of a putative membrane protein (pseudogene); 2 probable transmembrane helices predicted for BP1081 by TMHMM2.0 at aa 10-32 and 160-182.


ensembl_gene_id: BP1084
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Similar to Pseudomonas aeruginosa homoserine kinase ThrB or Pa5495 SW:KHSE_PSEAE (P29364) (316 aa) fasta scores: E(): 6.6e-40, 43.17% id in 315 aa, and to Caulobacter crescentus homoserine kinase Cc3364 TR:Q9A342 (EMBL:AE005998) (317 aa) fasta scores: E(): 4.3e-38, 39.31% id in 323 aa; Belongs to the pseudomonas-type ThrB family.


ensembl_gene_id: BP1085
symbol: dusA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.


ensembl_gene_id: BP1087
symbol: BP1087
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Mycobacterium tuberculosis hypothetical 15.1 kDa protein Rv2406c or Mtcy253.14 TR:P71737 (EMBL:Z81368) (142 aa) fasta scores: E(): 1.6e-11, 26.61% id in 139 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0250 TR:Q9I6N9 (EMBL:AE004463) (144 aa) fasta scores: E(): 5e-10, 33.09% id in 142 aa.


ensembl_gene_id: BP1088
symbol: BP1088
gene_biotype: protein_coding
description:
  Putative membrane protein; Its N-terminal region is similar to Escherichia coli ribonuclease BN rbn or B3886 or Z5425 or Ecs4809 SW:RBN_ECOLI (P32146) (290 aa) fasta scores: E(): 1.8e-33, 39.2% id in 250 aa, and to Neisseria meningitidis ribonuclease BN, putative Nmb0524 TR:Q9K0R0 (EMBL:AE002408) (406 aa) fasta scores: E(): 1.2e-36, 36.36% id in 396 aa.


ensembl_gene_id: BP1089
symbol: BP1089
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis hypothetical protein Nma0801 TR:Q9JVK4 (EMBL:AL162754) (117 aa) fasta scores: E(): 1.1e-13, 45.45% id in 99 aa, and to Vibrio cholerae hypothetical protein Vc2167 TR:Q9KQ37 (EMBL:AE004288) (145 aa) fasta scores: E(): 0.00097, 31.13% id in 106 aa.


ensembl_gene_id: BP1090
symbol: selO
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).


ensembl_gene_id: BP1091
symbol: BP1091
gene_biotype: protein_coding
description:
  Similar to Rhodobacter sphaeroides DmsO/TmaO-response regulator DorR TR:O30741 (EMBL:AF016236) (232 aa) fasta scores: E(): 8.7e-18, 33.76% id in 234 aa, and to Pseudomonas aeruginosa probable two-component response regulator Pa4983 TR:Q9HUI2 (EMBL:AE004911) (244 aa) fasta scores: E(): 2.2e-17, 33.33% id in 243 aa.


ensembl_gene_id: BP1092
symbol: BP1092
gene_biotype: protein_coding
description:
  Probable two-component histidine kinase; Similar to Escherichia coli sensor protein KdpD or B0695 SW:KDPD_ECOLI (P21865) (894 aa) fasta scores: E(): 6.1e-11, 30.9% id in 233 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1433 TR:Q9I3R4 (EMBL:AE004573) (650 aa) fasta scores: E(): 2.9e-27, 24.77% id in 654 aa.


ensembl_gene_id: BP1094
symbol: livG
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG or B3455 or Z4825 or Ecs4302 SW:LIVG_ECOLI (P22730) (255 aa) fasta scores: E(): 7e-31, 41.73% id in 254 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraF or Pa1071 SW:BRAF_PSEAE (P21629) (255 aa) fasta scores: E(): 3.5e-34, 45.85% id in 253 aa.


ensembl_gene_id: BP1095
symbol: livH
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 4.1e-17, 33.88% id in 304 aa, and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivH or LivA SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 3.9e-18, 35.19% id in 304 aa.


ensembl_gene_id: BP1097
symbol: livK
gene_biotype: protein_coding
description:
  High-affinity branched-chain amino acid transport system permease protein (Pseudogene); Large deletion in pertussis, relative to parapertussis and bronchiseptica, following this codon. This deletion may have also removed the N-terminal region of the downstream CDS, BP1097.


ensembl_gene_id: BP1098
symbol: livF
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF or B3454 SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: E(): 1.2e-26, 43.75% id in 240 aa, and to Rhizobium loti ABC transporter, ATP-binding protein Mlr5224 TR:Q98CB2 (EMBL:AP003006) (268 aa) fasta scores: E(): 2.1e-38, 51.41% id in 247 aa.


ensembl_gene_id: BP1099
symbol: BP1099
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae long-chain-fatty-acid--CoA ligase, putative Vc2484 TR:Q9KP89 (EMBL:AE004318) (601 aa) fasta scores: E(): 2e-51, 31.82% id in 597 aa, and to Aeropyrum pernix 651aa long hypothetical long-chain-fatty-acid--CoA ligase Ape1307 TR:Q9YCF0 (EMBL:AP000061) (651 aa) fasta scores: E(): 5.9e-68, 34.65% id in 629 aa.


ensembl_gene_id: BP1100
symbol: BP1100
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa2885 TR:Q9HZW2 (EMBL:AE004714) (198 aa) fasta scores: E(): 3.9e-24, 45.45% id in 176 aa, and to Pseudomonas fluorescens putative transcriptional regulator Pfi2 TR:Q9RFR4 (EMBL:AF173683) (207 aa) fasta scores: E(): 6.4e-23, 43.88% id in 180 aa.


ensembl_gene_id: BP1102
symbol: lysS
gene_biotype: protein_coding
description:
  Similar to Escherichia coli lysyl-tRNA synthetase LysS or HerC or AsuD or B2890 SW:SYK1_ECOLI (P13030) (504 aa) fasta scores: E(): 3.6e-115, 59.43% id in 498 aa, and to Neisseria meningitidis lysyl-tRNA synthetase LysS or Nma1638 TR:Q9JTT7 (EMBL:AL162756) (503 aa) fasta scores: E(): 1e-126, 62.32% id in 507 aa; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: BP1103
symbol: BP1103
gene_biotype: protein_coding
description:
  Probable short chain dehydrogenase; Similar to Homo sapiens sepiapterin reductase Spr SW:SPRE_HUMAN (P35270) (261 aa) fasta scores: E(): 2.1e-15, 38.4% id in 250 aa, and to Bacillus subtilis YueD protein TR:O32099 (EMBL:Z99120) (243 aa) fasta scores: E(): 1.1e-20, 36.25% id in 251 aa.


ensembl_gene_id: BP1104
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: BP1105
symbol: recJ
gene_biotype: protein_coding
description:
  Similar to Escherichia coli single-stranded-DNA-specific exonuclease RecJ or B2892 SW:RECJ_ECOLI (P21893) (577 aa) fasta scores: E(): 2.1e-86, 46.6% id in 575 aa, and to Neisseria meningitidis putative single-stranded-DNA-specific exonuclease RecJ or Nma1052 TR:Q9JV09 (EMBL:AL162755) (566 aa) fasta scores: E(): 3.2e-110, 54.32% id in 567 aa.


ensembl_gene_id: BP1106
symbol: BP1106
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Xanthomonas campestris regulatory protein RpfE TR:Q9L4D4 (EMBL:AJ245997) (306 aa) fasta scores: E(): 6e-10, 30.59% id in 317 aa, and to Xylella fastidiosa hypothetical protein Xf1109 TR:Q9PEB9 (EMBL:AE003946) (293 aa) fasta scores: E(): 1.2e-06, 29.06% id in 234 aa.


ensembl_gene_id: BP1107
symbol: lolC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli lipoprotein releasing system transmembrane protein LolE or B1118 SW:LOLE_ECOLI (P75958) (413 aa) fasta scores: E(): 1.4e-42, 36.27% id in 408 aa, and to Escherichia coli lipoprotein releasing system transmembrane protein LolC or B1116 or Z1757 or Ecs1494 SW:LOLC_ECOLI (P75956) (399 aa) fasta scores: E(): 2.7e-22, 34.86% id in 413 aa.


ensembl_gene_id: BP1108
symbol: lolD
gene_biotype: protein_coding
description:
  Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.


ensembl_gene_id: BP1109
symbol: BP1109
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative deoxyribonuclease YjjV or B4378 SW:YJJV_ECOLI (P39408) (259 aa) fasta scores: E(): 7.3e-29, 42.06% id in 252 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3564 TR:Q9HY53 (EMBL:AE004777) (225 aa) fasta scores: E(): 1.2e-25, 40.62% id in 224 aa.


ensembl_gene_id: BP1110
symbol: sphB3
gene_biotype: protein_coding
description:
  Serine protease; Similar to Pseudomonas tolaasii serine protease EprS TR:O87811 (EMBL:AJ007828) (985 aa) fasta scores: E(): 1.1e-18, 25% id in 1060 aa, and to Serratia marcescens Ssp-h1 TR:Q54483 (EMBL:D78380) (1036 aa) fasta scores: E(): 9.3e-26, 27.08% id in 1067 aa.


ensembl_gene_id: BP1112
symbol: bipA
gene_biotype: protein_coding
description:
  Similar to Bordetella bronchiseptica putative outer membrane ligand binding protein BipA TR:Q9APE8 (EMBL:AF304006) (1578 aa) fasta scores: E(): 0, 79.75% id in 1576 aa, and to Escherichia coli O157:H7 EDL933 putative adhesin EaeH TR:AAG54632 (EMBL:AE005207) (1417 aa) fasta scores: E(): 1.6e-17, 23.88% id in 1390 aa. Also similar to BP3204, 41.856% identity (43.284% ungapped) in 970 aa overlap.


ensembl_gene_id: BP1116
symbol: BP1116
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Salmonella typhimurium protein TrpH SW:TRPH_SALTY (O54453) (289 aa) fasta scores: E(): 1.8e-32, 39.78% id in 274 aa, and to Neisseria meningitidis hypothetical protein Nmb1824 TR:Q9JXZ5 (EMBL:AE002531) (278 aa) fasta scores: E(): 3e-45, 50.18% id in 271 aa.


ensembl_gene_id: BP1117
symbol: greB
gene_biotype: protein_coding
description:
  Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.


ensembl_gene_id: BP1119
symbol: fim2
gene_biotype: protein_coding
description:
  Serotype 2 fimbrial subunit precursor; Bordetella pertussis is the causative agent of whooping cough. An essential step in the disease process is the attachment of the bacteria to the ciliated epithelium of the respiratory tract, enabling the organism to resist normal host-clearance mechanisms. It is unclear which bacterial cell surface component are responsible for adherence but the fimbriae of B.pertussis are prime candidates for being involved in this process; Belongs to the fimbrial protein family.


ensembl_gene_id: BP1120
symbol: maeB-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli NADP-dependent malic enzyme MaeB or B2463 SW:MAO2_ECOLI (P76558) (759 aa) fasta scores: E(): 8.6e-184, 62.13% id in 758 aa, and to Pasteurella multocida Mdh Mdh_1 or pm0002 TR:Q9CPN5 (EMBL:AE006034) (758 aa) fasta scores: E(): 5.8e-179, 62.48% id in 757 aa.


ensembl_gene_id: BP1122
symbol: BP1122
gene_biotype: protein_coding
description:
  AsnC-family transcriptional regulator; Similar to Escherichia coli leucine-responsive regulatory protein Lrp or AlsB or LivR or Ihb or OppI or B0889 SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E(): 1.8e-21, 41.29% id in 155 aa, and to Pseudomonas putida bkd operon transcriptional regulator BkdR SW:BKDR_PSEPU (P42179) (161 aa) fasta scores: E(): 2.6e-32, 61.33% id in 150 aa.


ensembl_gene_id: BP1123
symbol: BP1123
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa3934 TR:Q9HX82 (EMBL:AE004811) (678 aa) fasta scores: E(): 1.7e-151, 66.22% id in 678 aa, and to Neisseria meningitidis putative integral membrane protein Nma0207 TR:Q9JWW6 (EMBL:AL162752) (672 aa) fasta scores: E(): 4e-127, 56.58% id in 668 aa.


ensembl_gene_id: BP1124
symbol: odhA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 2-oxoglutarate dehydrogenase E1 component SucA or B0726 or Z0880 or Ecs0751 SW:ODO1_ECOLI (P07015) (933 aa) fasta scores: E(): 3e-194, 53.87% id in 941 aa, and to Alcaligenes eutrophus oxoglutarate dehydrogenase OdhA SW:ODO1_ALCEU (Q59106) (950 aa) fasta scores: E(): 0, 73.52% id in 948 aa.


ensembl_gene_id: BP1125
symbol: odhB
gene_biotype: protein_coding
description:
  Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: BP1126
symbol: odhL
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase complex, E3 component; Similar to Alcaligenes eutrophus dihydrolipoamide dehydrogenase OdhL SW:DLDH_ALCEU (P52992) (474 aa) fasta scores: E(): 4.8e-107, 60.29% id in 476 aa, and to Neisseria meningitidis putative dihydrolipoamide dehydrogenase e3 component lpda3 or nma1151 TR:Q9JUT1 (EMBL:AL162755) (477 aa) fasta scores: E(): 1.8e-109, 64.34% id in 474 aa.


ensembl_gene_id: BP1127
symbol: BP1127
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Alcaligenes eutrophus odhA, odhB, odhL, orf1 and orf5 genes TR:Q44029 (EMBL:X91877) (186 aa) fasta scores: E(): 5e-56, 77.83% id in 185 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4438 pa4438 TR:Q9HVX7 (EMBL:AE004858) (364 aa) fasta scores: E(): 1e-64, 49.31% id in 363 aa.


ensembl_gene_id: BP1128
symbol: fabG
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 6e-23, 38.73% id in 253 aa, and to Pseudomonas aeruginosa 3-oxoacyl-[acyl-carrier protein] reductase FabG or Pa2967 SW:FABG_PSEAE (O54438) (247 aa) fasta scores: E(): 5.2e-25, 40.07% id in 252 aa.


ensembl_gene_id: BP1129
symbol: BP1129
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Frateuria spANA-18 regulator of cat2 gene cluster OrfR2 TR:Q9Z9Y2 (EMBL:AB009373) (295 aa) fasta scores: E(): 3.1e-30, 37.96% id in 295 aa, and to Deinococcus radiodurans transcriptional regulator, LysR family dr0615 TR:Q9RWQ1 (EMBL:AE001919) (317 aa) fasta scores: E(): 1.4e-31, 39.35% id in 310 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1131
symbol: BP1131
gene_biotype: protein_coding
description:
  Putattive exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.2e-52, 46.95% id in 328 aa, and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 1.4e-49, 45.39% id in 315 aa.


ensembl_gene_id: BP1132
symbol: BP1132
gene_biotype: protein_coding
description:
  Probable short-chain dehydrogenase; Similar to Vibrio harveyi 3-oxoacyl-[acyl-carrier protein] reductase FabG SW:FABG_VIBHA (P55336) (244 aa) fasta scores: E(): 6.5e-16, 40.85% id in 235 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase Pa4162 TR:Q9HWL9 (EMBL:AE004832) (238 aa) fasta scores: E(): 4.7e-32, 47.8% id in 228 aa.


ensembl_gene_id: BP1136
symbol: fecI
gene_biotype: protein_coding
description:
  ECF-family sigma factor; Similar to Escherichia coli probable RNA polymerase sigma factor FecI or B4293 SW:FECI_ECOLI (P23484) (173 aa) fasta scores: E(): 1e-21, 43.82% id in 162 aa, and to Pseudomonas aeruginosa putative RNA polymerase sigma factor Pa3899 TR:Q9HXB4 (EMBL:AE004807) (169 aa) fasta scores: E(): 1.9e-31, 54.54% id in 165 aa. Also similar to BP0349, 46.875% identity in 160 aa overlap; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: BP1137
symbol: fecR
gene_biotype: protein_coding
description:
  Putative signal transduction protein; Similar to Escherichia coli protein FecR or B4292 SW:FECR_ECOLI (P23485) (317 aa) fasta scores: E(): 5.3e-19, 32.17% id in 317 aa, and to Pseudomonas putida pupI and pupR genes PupR TR:Q52209 (EMBL:X77918) (324 aa) fasta scores: E(): 1.3e-28, 37.88% id in 322 aa.


ensembl_gene_id: BP1138
symbol: bfrH
gene_biotype: protein_coding
description:
  Similar to Escherichia coli ferrichrome-iron receptor precursor FhuA or TonA or B0150 SW:FHUA_ECOLI (P06971) (747 aa) fasta scores: E(): 4.9e-61, 38.21% id in 717 aa, and to Burkholderia cepacia ornibactin receptor precursor OrbA TR:Q9F480 (EMBL:AF013993) (755 aa) fasta scores: E(): 6.7e-72, 36.05% id in 746 aa.


ensembl_gene_id: BP1139
symbol: BP1139
gene_biotype: protein_coding
description:
  Putative iron uptake protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0800 TR:Q9I5D8 (EMBL:AE004515) (177 aa) fasta scores: E(): 1.4e-08, 44.82% id in 87 aa.


ensembl_gene_id: BP1141
symbol: BP1141
gene_biotype: protein_coding
description:
  Putative iron uptake protein (Pseudogene); TGA stop in pertussis; TGG in parapertussis and bronchiseptica.


ensembl_gene_id: BP1143
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: BP1145
symbol: BP1145
gene_biotype: protein_coding
description:
  Similar to Escherichia coli probable ATP-dependent helicase DinG or RarB or B0799 SW:DING_ECOLI (P27296) (716 aa) fasta scores: E(): 2.1e-27, 30.15% id in 703 aa, and to Escherichia coli probable ATP-dependent helicase YoaA or B1808 SW:YOAA_ECOLI (P76257) (636 aa) fasta scores: E(): 3.1e-41, 40.49% id in 684 aa.


ensembl_gene_id: BP1146
symbol: comL
gene_biotype: protein_coding
description:
  Competence lipoprotein precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: BP1147
symbol: rluD
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: BP1148
symbol: BP1148
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa4543 SW:Y9E3_PSEAE (P33663) (242 aa) fasta scores: E(): 9.1e-33, 49.78% id in 229 aa, and to Escherichia coli hypothetical protein YfiH or B2593 SW:YFIH_ECOLI (P33644) (243 aa) fasta scores: E(): 1.4e-31, 47.61% id in 231 aa; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: BP1149
symbol: phbC
gene_biotype: protein_coding
description:
  Similar to Alcaligenes eutrophus poly-beta-hydroxybutyrate polymerase PhbC SW:PHBC_ALCEU (P23608) (589 aa) fasta scores: E(): 8.2e-129, 58.96% id in 541 aa, and to Burkholderia SpDSMZ 9242. phac TR:Q9RB82 (EMBL:AF153086) (625 aa) fasta scores: E(): 1.6e-124, 55.78% id in 545 aa.


ensembl_gene_id: BP1150
symbol: phbB
gene_biotype: protein_coding
description:
  Similar to Alcaligenes eutrophus acetoacetyl-CoA reductase PhbB SW:PHBB_ALCEU (P14697) (246 aa) fasta scores: E(): 1.6e-71, 76.82% id in 246 aa, and to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 2.5e-34, 45.67% id in 243 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: BP1151
symbol: BP1151
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Alcaligenes eutrophus hypothetical 21.0 kDa protein TR:O68272 (EMBL:AF026544) (183 aa) fasta scores: E(): 2.8e-48, 73.48% id in 181 aa, and to Burkholderia spDSMZ 9242. hypothetical 21.8 kDa protein TR:Q9RB79 (EMBL:AF153086) (188 aa) fasta scores: E(): 2.1e-47, 71.5% id in 179 aa.


ensembl_gene_id: BP1152
symbol: BP1152
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pasteurella multocida hypothetical protein Pm0452 TR:Q9CNH9 (EMBL:AE006081) (173 aa) fasta scores: E(): 3.9e-34, 55.74% id in 174 aa, and to Campylobacter jejuni periplasmic protein P19 or Cj1659 TR:Q9PM18 (EMBL:AL139079) (179 aa) fasta scores: E(): 1.2e-32, 51.09% id in 182 aa.


ensembl_gene_id: BP1153
symbol: BP1153
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Prochlorothrix hollandica plastocyanin precursor PetE SW:PLAS_PROHO (P50057) (131 aa) fasta scores: E(): 2.7, 27.2% id in 125 aa, and to Rickettsia prowazekii hypothetical protein Rp394 SW:Y394_RICPR (Q9ZDD7) (125 aa) fasta scores: E(): 0.00021, 39.74% id in 78 aa.


ensembl_gene_id: BP1154
symbol: BP1154
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis hypothetical protein Nmb0034 TR:Q9K1P7 (EMBL:AE002362) (279 aa) fasta scores: E(): 2.1e-20, 31.59% id in 269 aa, and to Streptomyces coelicolor putative membrane protein Scc75a.23 TR:Q9RKQ1 (EMBL:AL133220) (290 aa) fasta scores: E(): 3.3e-18, 34.4% id in 250 aa.


ensembl_gene_id: BP1155
symbol: BP1155
gene_biotype: protein_coding
description:
  Putative regulatory protein; Similar to Synechocystis sp nitrogen assimilation regulatory protein Slr1529 TR:P74210 (EMBL:D90913) (835 aa) fasta scores: E(): 1.5e-09, 26.03% id in 434 aa, and to Achromobacter cycloclastes regulatory protein NosR TR:O68476 (EMBL:AF047429) (731 aa) fasta scores: E(): 0.05, 24.9% id in 261 aa, and to Rhizobium meliloti regulatory protein NosR TR:O68483 (EMBL:AF047430) (755 aa) fasta scores: E(): 1.4, 24.9% id in 249 aa.


ensembl_gene_id: BP1156
symbol: BP1156
gene_biotype: protein_coding
description:
  Conserved hypotheticals protein; Similar to Pseudomonas aeruginosa phenazine/pyocyanine biosynthesis protein PhzF SW:PHZF_PSEAE (O69754) (278 aa) fasta scores: E(): 2.7e-08, 31.43% id in 299 aa, and to Erwinia chrysanthemi putative antibiotic biosynthesis protein Pab TR:CAC59746 (EMBL:AJ310612) (293 aa) fasta scores: E(): 1.5e-17, 36.42% id in 302 aa.


ensembl_gene_id: BP1158
symbol: BP1158
gene_biotype: protein_coding
description:
  Putative dioxygenase; Similar to Agrobacterium tumefaciens Agr_l_1189p TR:AAK89172 (EMBL:AE008257) (134 aa) fasta scores: E(): 1.3e-30, 65.89% id in 129 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3956 TR:Q9HX60 (EMBL:AE004813) (144 aa) fasta scores: E(): 4.3e-15, 45.9% id in 122 aa.


ensembl_gene_id: BP1159
symbol: BP1159
gene_biotype: protein_coding
description:
  Similar to Pseudomonas paucimobilis 2-pyrone-4,6-dicarboxylic acid hydrolase LigI TR:O87170 (EMBL:AB015964) (293 aa) fasta scores: E(): 6.8e-17, 30.76% id in 273 aa, and to Sphingomonas spLB126 FldB protein TR:Q9L399 (EMBL:AJ277295) (295 aa) fasta scores: E(): 4.1e-19, 32.24% id in 276 aa.


ensembl_gene_id: BP1160
symbol: BP1160
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Burkholderia cepacia hypothetical 35.5 kDa protein TR:AAK81675 (EMBL:AF029344) (337 aa) fasta scores: E(): 3.1e-31, 37.1% id in 318 aa, and to Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 3.1e-31, 37.1% id in 318 aa.


ensembl_gene_id: BP1161
symbol: BP1161
gene_biotype: protein_coding
description:
  Putative racemase; Similar to Rhizobium loti Mlr3365 protein TR:Q98GE6 (EMBL:AP003001) (389 aa) fasta scores: E(): 5.1e-26, 31.16% id in 385 aa, and to Streptomyces coelicolor putative isomerase Sce65.11C TR:Q9RKG2 (EMBL:AL133236) (377 aa) fasta scores: E(): 3.7e-24, 32.04% id in 362 aa; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: BP1162
symbol: BP1162
gene_biotype: protein_coding
description:
  Probable LysR-family transcriptional regulator; Similar to the previously sequenced Bordetella pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta scores: E(): 3.4e-23, 34.02% id in 288 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores: E(): 3e-23, 33.9% id in 289 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1163
symbol: BP1163
gene_biotype: protein_coding
description:
  Similar to Picea abies short-chain type dehydrogenase/reductase SW:SDR1_PICAB (Q08632) (271 aa) fasta scores: E(): 1.4e-22, 38.37% id in 258 aa, and to Streptomyces coelicolor reductase Stah10.29 TR:Q9RKS8 (EMBL:AL132824) (262 aa) fasta scores: E(): 5e-40, 54.43% id in 248 aa.


ensembl_gene_id: BP1164
symbol: BP1164
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Zymomonas mobilis tetracenomycin C resistance and export protein YjcC TR:Q9X3X9 (EMBL:AF088896) (487 aa) fasta scores: E(): 6.8e-48, 45.64% id in 436 aa, and to Escherichia coli hypothetical transport protein YebQ or B1828 SW:YEBQ_ECOLI (P76269) (457 aa) fasta scores: E(): 6.9e-46, 45.59% id in 443 aa.


ensembl_gene_id: BP1165
symbol: BP1165
gene_biotype: protein_coding
description:
  Sodium/solute symporter; Similar to Escherichia coli sodium/pantothenate symporter PanF or B3258 SW:PANF_ECOLI (P16256) (483 aa) fasta scores: E(): 7.4e-16, 25.22% id in 448 aa, and to Haemophilus influenzae sodium/pantothenate symporter PanF or Hi0975 SW:PANF_HAEIN (P44963) (484 aa) fasta scores: E(): 8.4e-14, 22.05% id in 467 aa; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: BP1166
symbol: ldcA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli muramoyltetrapeptide carboxypeptidase LdcA or B1192 SW:LDCA_ECOLI (P76008) (304 aa) fasta scores: E(): 1.3e-16, 32.83% id in 265 aa, and to Streptomyces coelicolor hypothetical protein Sc9c7.25 SW:YC25_STRCO (Q9ZBI5) (310 aa) fasta scores: E(): 7.3e-24, 40.62% id in 320 aa.


ensembl_gene_id: BP1167
symbol: BP1167
gene_biotype: protein_coding
description:
  Putative adolase; Similar to Rhizobium meliloti putative adolase/adducin sma1976 TR:AAK65743 (EMBL:AE007294) (249 aa) fasta scores: E(): 3.9e-36, 48.01% id in 227 aa, and to Pseudomonas aeruginosa hypothetical aldolase class ii protein Pa3430 SW:YY30_PSEAE (Q9HYH5) (259 aa) fasta scores: E(): 6.5e-19, 34.48% id in 232 aa.


ensembl_gene_id: BP1168
symbol: BP1168
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Escherichia coli transcriptional activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 3.4e-21, 32.36% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa5085 TR:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores: E(): 7.8e-27, 34% id in 300 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1169
symbol: BP1169
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to Escherichia coli 2-hydroxy-3-oxopropionate reductase GarR or B3125 SW:GARR_ECOLI (P23523) (294 aa) fasta scores: E(): 6.8e-21, 31.61% id in 291 aa, and to Homo sapiens 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor HibadH SW:D3HI_HUMAN (P31937) (336 aa) fasta scores: E(): 1.9e-21, 32% id in 300 aa.


ensembl_gene_id: BP1170
symbol: BP1170
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.1e-36, 37.73% id in 318 aa, and to Burkholderia cepacia hypothetical 35.5 kDa protein TR:AAK81675 (EMBL:AF029344) (337 aa) fasta scores: E(): 1.4e-32, 35.69% id in 311 aa.


ensembl_gene_id: BP1171
symbol: BP1171
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mll4877 protein TR:Q98D37 (EMBL:AP003005) (194 aa) fasta scores: E(): 1.2e-33, 49.48% id in 194 aa, and to Eubacterium barkeri hypothetical protein in mgm 5' region TR:Q45883 (EMBL:X77484) (123 aa) fasta scores: E(): 5.3e-16, 44.53% id in 119 aa.


ensembl_gene_id: BP1174
symbol: BP1174
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); 7 probable transmembrane helices predicted for BP1173 by TMHMM2.0 at aa 85-107, 127-149, 159-178, 199-218, 233-255, 262-284 and 289-308.


ensembl_gene_id: BP1175
symbol: BP1175
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0320 TR:Q9I6H1 (EMBL:AE004470) (116 aa) fasta scores: E(): 3.7e-06, 35.05% id in 97 aa, and to Escherichia coli protein YgiW precursor or B3024 or Z4376 or Ecs3906 SW:YGIW_ECOLI (P52083) (130 aa) fasta scores: E(): 3.8e-05, 36.63% id in 101 aa.


ensembl_gene_id: BP1176
symbol: astE
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa succinylglutamate desuccinylase AstE or AruE or Pa0901 SW:ASTE_PSEAE (O50177) (332 aa) fasta scores: E(): 0.23, 25.82% id in 302 aa, and to Agrobacterium tumefaciens Agr_pat_335p TR:AAK90609 (EMBL:AE007893) (335 aa) fasta scores: E(): 0.0023, 26.44% id in 276 aa.


ensembl_gene_id: BP1178
symbol: BP1178
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2712 TR:Q9I0D0 (EMBL:AE004699) (287 aa) fasta scores: E(): 6.3e-48, 52.77% id in 288 aa, and to Rhizobium loti Mlr3480 protein TR:Q98G57 (EMBL:AP003002) (303 aa) fasta scores: E(): 3.5e-08, 31.67% id in 281 aa.


ensembl_gene_id: BP1180
symbol: BP1180
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to the previously sequenced Bordetella pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta scores: E(): 8e-11, 28.74% id in 254 aa, and to Yersinia pestis similar to hypothetical transcriptional regulator TR:Q9ZC44 (EMBL:AL031866) (320 aa) fasta scores: E(): 8.5e-23, 30.36% id in 303 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1181
symbol: glnQ
gene_biotype: protein_coding
description:
  Amino acids ABC transporter, ATP-binding protein; Similar to Bacillus stearothermophilus glutamine transport ATP-binding protein GlnQ SW:GLNQ_BACST (P27675) (242 aa) fasta scores: E(): 1.6e-52, 61.15% id in 242 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa4192 TR:Q9HWI9 (EMBL:AE004835) (247 aa) fasta scores: E(): 9.6e-59, 70.29% id in 239 aa.


ensembl_gene_id: BP1182
symbol: BP1182
gene_biotype: protein_coding
description:
  Amino acids ABC transporter, permease protein; Similar to Pseudomonas aeruginosa probable permease of ABC transporter Pa4193 TR:Q9HWI8 (EMBL:AE004835) (234 aa) fasta scores: E(): 3.1e-45, 57.33% id in 218 aa, and to Agrobacterium tumefaciens Agr_l_1163p TR:AAK89156 (EMBL:AE008256) (252 aa) fasta scores: E(): 4.6e-43, 52.42% id in 227 aa.


ensembl_gene_id: BP1183
symbol: BP1183
gene_biotype: protein_coding
description:
  Amino acids ABC transporter, permease protein; Similar to Escherichia coli glutamate/aspartate transport system permease protein gltj gltj or b0654 SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): 6.4e-22, 32.47% id in 234 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter Pa4194 TR:Q9HWI7 (EMBL:AE004835) (232 aa) fasta scores: E(): 7.6e-36, 47.03% id in 219 aa.


ensembl_gene_id: BP1184
symbol: BP1184
gene_biotype: protein_coding
description:
  Probable solute-binding protein; Similar to Escherichia coli cystine-binding periplasmic protein precursor FliY or B1920 SW:FLIY_ECOLI (P39174) (266 aa) fasta scores: E(): 4.8e-13, 26% id in 223 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter Pa4195 TR:Q9HWI6 (EMBL:AE004836) (276 aa) fasta scores: E(): 8.1e-24, 36.17% id in 235 aa; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: BP1185
symbol: aspC
gene_biotype: protein_coding
description:
  Similar to Rhizobium leguminosarum aspartate aminotransferase AspC or AatA SW:AAT_RHILP (O86459) (400 aa) fasta scores: E(): 3.8e-76, 51.76% id in 396 aa, and to Rhizobium meliloti aspartate aminotransferase A AatA or R02325 or smc01578 SW:AATA_RHIME (Q02635) (400 aa) fasta scores: E(): 4.4e-76, 50.75% id in 396 aa.


ensembl_gene_id: BP1186
symbol: BP1186
gene_biotype: protein_coding
description:
  Putative aldolase; Similar to Pseudomonas straminea 4-hydroxy-4-methyl-2-oxoglutarate aldolase ProA TR:Q9AQI0 (EMBL:AB050935) (227 aa) fasta scores: E(): 1.2e-20, 39.37% id in 193 aa, and to Agrobacterium tumefaciens Agr_pat_472p TR:AAK90703 (EMBL:AE007901) (227 aa) fasta scores: E(): 2.8e-31, 46.39% id in 222 aa.


ensembl_gene_id: BP1188
symbol: BP1188
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to the internal region of Bordetella bronchiseptica adhesin FhaB TR:Q9JP78 (EMBL:AF111796) (3634 aa) fasta scores: E(): 0.8, 28.31% id in 226 aa.


ensembl_gene_id: BP1188A
symbol: BP1188A
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to Homo sapiens MHC class III region complement C4A TR:Q30211 (EMBL:S58715) (79 aa) fasta scores: E(): 4.1, 32.87% id in 73 aa.


ensembl_gene_id: BP1189
symbol: BP1189
gene_biotype: protein_coding
description:
  Lipoprotein; Similar to Vibrio cholerae lipoprotein Vc1962 TR:Q9KQN6 (EMBL:AE004271) (163 aa) fasta scores: E(): 5.4e-15, 42.63% id in 129 aa, and to Treponema pallidum 17 kDa lipoprotein precursor Tpp17 or Tp0435 SW:TA17_TREPA (P29722) (156 aa) fasta scores: E(): 0.0073, 30.06% id in 153 aa.


ensembl_gene_id: BP1190
symbol: BP1190
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: BP1191
symbol: BP1191
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus putative RNA polymerase sigma factor Cc3266 TR:Q9A3D8 (EMBL:AE005990) (291 aa) fasta scores: E(): 2.9e-50, 53.19% id in 282 aa, and to Streptomyces coelicolor putative RNA polymerase sigma factor 2 Scg18.10C TR:Q9K3H7 (EMBL:AL390188) (295 aa) fasta scores: E(): 3.5e-39, 42.76% id in 297 aa; Belongs to the sigma-70 factor family.


ensembl_gene_id: BP1192
symbol: BP1192
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Burkholderia cepacia phosphate transport protein TR:Q9RMS6 (EMBL:AF190626) (181 aa) fasta scores: E(): 7.3, 31.63% id in 98 aa.


ensembl_gene_id: BP1193
symbol: BP1193
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa3612 TR:Q9HY14 (EMBL:AE004781) (73 aa) fasta scores: E(): 1.6e-11, 51.47% id in 68 aa, and to Vibrio cholerae hypothetical protein Vca0163 TR:Q9KN03 (EMBL:AE004357) (70 aa) fasta scores: E(): 4.5e-09, 49.2% id in 63 aa.


ensembl_gene_id: BP1194
symbol: BP1194
gene_biotype: protein_coding
description:
  Similar to Thermotoga maritima conserved hypothetical protein Tm1181 TR:Q9X0R3 (EMBL:AE001774) (179 aa) fasta scores: E(): 7.8e-26, 45.18% id in 166 aa, and to Bacillus halodurans Bh1524 protein TR:Q9KCP5 (EMBL:AP001512) (183 aa) fasta scores: E(): 7.4e-24, 41.95% id in 174 aa.


ensembl_gene_id: BP1195
symbol: BP1195
gene_biotype: protein_coding
description:
  Ferredoxin; Similar to Synechococcus sp ferredoxin II SW:FER2_SYNP6 (P08451) (104 aa) fasta scores: E(): 0.00022, 37.5% id in 96 aa, and to Vibrio cholerae ferredoxin Vc0311 TR:Q9KV47 (EMBL:AE004119) (89 aa) fasta scores: E(): 1.3e-06, 40.47% id in 84 aa.


ensembl_gene_id: BP1197
symbol: btr
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein; May regulate gene expression in response to changes in oxygen levels or to changes in the redox potential of the bacterial environment.


ensembl_gene_id: BP1198
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent protease, ATPase subunit; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB [...]


ensembl_gene_id: BP1201
symbol: tcfA
gene_biotype: protein_coding
description:
  Tracheal colonization factor precursor; Identical to the previously sequenced Bordetella pertussis tracheal colonization factor precursor Tcfa2 TR:O86135 (EMBL:AJ009785) (647 aa) fasta scores: E(): 1.7e-171, 99.84% id in 647 aa.


ensembl_gene_id: BP1202
symbol: BP1202
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti transcriptional regulator Mll3386 TR:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores: E(): 2.1e-34, 50.73% id in 205 aa, and to Mycobacterium tuberculosis CDC1551 transcriptional regulator, TetR family Mt3262 TR:AAK47601 (EMBL:AE007140) (200 aa) fasta scores: E(): 4.3e-05, 30.23% id in 172 aa.


ensembl_gene_id: BP1203
symbol: BP1203
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mll9388 protein Mll9388 TR:Q981G1 (EMBL:AP003016) (408 aa) fasta scores: E(): 5.5e-89, 63.03% id in 395 aa, and to Rhizobium sp hypothetical protein Y4ou precursor Y4ou SW:Y4OU_RHISN (P55606) (402 aa) fasta scores: E(): 7.6e-88, 62.02% id in 395 aa; Belongs to the UPF0261 family.


ensembl_gene_id: BP1204
symbol: BP1204
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti conserved hypothetical protein Sma1332 TR:AAK65386 (EMBL:AE007260) (280 aa) fasta scores: E(): 9.4e-70, 69.09% id in 275 aa, and to Rhizobium loti Mll9387 protein Mll9387 TR:Q981G2 (EMBL:AP003016) (285 aa) fasta scores: E(): 1.1e-69, 69.34% id in 274 aa.


ensembl_gene_id: BP1205
symbol: BP1205
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr1698 protein Mlr1698 TR:Q98K03 (EMBL:AP002998) (147 aa) fasta scores: E(): 5.6e-16, 38.29% id in 141 aa, and to Mycobacterium tuberculosis hypothetical 16.8 kDa protein Rv1919c or Mtv050.03C TR:O53961 (EMBL:AL022020) (154 aa) fasta scores: E(): 0.046, 29.41% id in 136 aa.


ensembl_gene_id: BP1206
symbol: BP1206
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Salmonella typhimurium OsmT protein TR:CAC44465 (EMBL:AJ313506) (308 aa) fasta scores: E(): 3.8e-19, 31.66% id in 300 aa, and to Agrobacterium tumefaciens Agr_l_1195p TR:AAK89175 (EMBL:AE008258) (298 aa) fasta scores: E(): 5.7e-25, 34.25% id in 289 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1207
symbol: BP1207
gene_biotype: protein_coding
description:
  N-acyl-D-glutamate deacylase; Similar to Alcaligenes xylosoxydans xylosoxydans N-acyl-D-glutamate deacylase SW:NDED_ALCXX (P94211) (488 aa) fasta scores: E(): 1.9e-144, 78.78% id in 476 aa, and to Alcaligenes faecalis D-aminoacylase TR:Q9AGH8 (EMBL:AF332548) (484 aa) fasta scores: E(): 2e-73, 48.13% id in 482 aa.


ensembl_gene_id: BP1208
symbol: BP1208
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.6e-47, 44.98% id in 309 aa, and to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 6.7e-42, 41.45% id in 316 aa.


ensembl_gene_id: BP1209
symbol: BP1209
gene_biotype: protein_coding
description:
  Probable oxidoreductase; Similar to Escherichia coli sulfite reductase [NADPH] flavoprotein alpha-component CysJ or B2764 SW:CYSJ_ECOLI (P38038) (598 aa) fasta scores: E(): 7.2e-14, 27.01% id in 596 aa, and to Caulobacter crescentus sulfite reductase Cc3063 TR:Q9A3Y7 (EMBL:AE005969) (504 aa) fasta scores: E(): 1.3e-40, 51.88% id in 503 aa.


ensembl_gene_id: BP1210
symbol: apbE
gene_biotype: protein_coding
description:
  Thiamine biosynthesis lipoprotein precursor; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: BP1211
symbol: BP1211
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Xylella fastidiosa hypothetical protein Xf0595 TR:Q9PFR2 (EMBL:AE003905) (267 aa) fasta scores: E(): 4e-46, 50.76% id in 260 aa, and to Caulobacter crescentus hypothetical protein Cc3061 TR:Q9A3Y9 (EMBL:AE005969) (247 aa) fasta scores: E(): 7.2e-34, 49.5% id in 200 aa.


ensembl_gene_id: BP1212
symbol: BP1212
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Caulobacter crescentus hypothetical protein Cc3060 TR:Q9A3Z0 (EMBL:AE005969) (171 aa) fasta scores: E(): 1.3e-34, 55.23% id in 172 aa, and to Xylella fastidiosa hypothetical protein Xf0596 TR:Q9PFR1 (EMBL:AE003905) (174 aa) fasta scores: E(): 1.9e-33, 52.63% id in 171 aa.


ensembl_gene_id: BP1213
symbol: BP1213
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Caulobacter crescentus hypothetical protein Cc3059 TR:Q9A3Z1 (EMBL:AE005969) (209 aa) fasta scores: E(): 2.7e-43, 55.92% id in 211 aa, and to Xylella fastidiosa hypothetical protein Xf0597 TR:Q9PFR0 (EMBL:AE003905) (218 aa) fasta scores: E(): 7.7e-45, 56.73% id in 208 aa.


ensembl_gene_id: BP1214
symbol: nodI
gene_biotype: protein_coding
description:
  ABC, transporter, ATP-binding protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.


ensembl_gene_id: BP1215
symbol: nodJ
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Similar to Rhizobium sp nodulation protein J NodJ or Y4hE SW:NODJ_RHISN (P55475) (262 aa) fasta scores: E(): 2.2e-39, 42.3% id in 260 aa, and to Bradyrhizobium spWM9 probable nodulation ABC transporter permease nodJ TR:Q9AQ19 (EMBL:AF222753) (261 aa) fasta scores: E(): 3.8e-39, 44.7% id in 255 aa.


ensembl_gene_id: BP1216
symbol: BP1216
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa5409 TR:Q9HTF5 (EMBL:AE004953) (186 aa) fasta scores: E(): 1.1e-33, 55.3% id in 179 aa, and to Rhizobium loti Mll6732 protein Mll6732 TR:Q988I2 (EMBL:AP003010) (200 aa) fasta scores: E(): 0.00082, 25.59% id in 168 aa.


ensembl_gene_id: BP1217
symbol: crcB
gene_biotype: protein_coding
description:
  Putative membrane protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: BP1218
symbol: BP1218
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Zymomonas mobilis shc hpnE TR:Q56996 (EMBL:X80766) (414 aa) fasta scores: E(): 4.8e-06, 25.87% id in 456 aa, and to Neisseria meningitidis putative oxidoreductase Nma1338 TR:Q9JUF6 (EMBL:AL162755) (437 aa) fasta scores: E(): 5.1e-33, 38.92% id in 447 aa.


ensembl_gene_id: BP1219
symbol: BP1219
gene_biotype: protein_coding
description:
  Putative phytoene synthase; Similar to Narcissus pseudonarcissus phytoene synthase precursor Psy SW:PSY_NARPS (P53797) (423 aa) fasta scores: E(): 8.1e-29, 32.72% id in 275 aa, and to Neisseria meningitidis phytoene synthase, putative Nmb1168 or Nmb1130 TR:Q9JRU9 (EMBL:AE002465) (290 aa) fasta scores: E(): 3.7e-54, 51.43% id in 278 aa.


ensembl_gene_id: BP1220
symbol: BP1220
gene_biotype: protein_coding
description:
  Similar to Streptomyces griseus phytoene synthase CrtB or CrtI SW:CRTB_STRGR (P54977) (342 aa) fasta scores: E(): 2.4e-14, 34.57% id in 269 aa, and to Neisseria meningitidis putative transferase Nma1721 TR:Q9JTL7 (EMBL:AL162756) (276 aa) fasta scores: E(): 1.9e-49, 50.54% id in 275 aa.


ensembl_gene_id: BP1221
symbol: dadX
gene_biotype: protein_coding
description:
  Alanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: BP1222
symbol: BP1222
gene_biotype: protein_coding
description:
  Probable short-chain dehydrogenase; Similar to Streptococcus agalactiae CylG TR:Q9X429 (EMBL:AF093787) (240 aa) fasta scores: E(): 1e-20, 34.16% id in 240 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase Pa4162 TR:Q9HWL9 (EMBL:AE004832) (238 aa) fasta scores: E(): 2.6e-52, 61.53% id in 234 aa.


ensembl_gene_id: BP1225
symbol: BP1225
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa putative RNA polymerase sigma factor Pa2896 TR:Q9HZV1 (EMBL:AE004716) (194 aa) fasta scores: E(): 8.5e-19, 43.15% id in 190 aa, and to Rhizobium loti RNA polymerase Ecf-type sigma factor Mll8140 TR:Q983W6 (EMBL:AP003013) (208 aa) fasta scores: E(): 1.3e-10, 33.33% id in 171 aa; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: BP1227
symbol: radA
gene_biotype: protein_coding
description:
  Putative exported protein (pseudogene); DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: BP1228
symbol: BP1228
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2847 TR:Q9HZZ6 (EMBL:AE004711) (249 aa) fasta scores: E(): 2.8e-32, 45.45% id in 242 aa, and to Streptomyces coelicolor hypothetical 26.0 kDa protein Sc7a8.24C TR:Q9L2D4 (EMBL:AL137187) (260 aa) fasta scores: E(): 8.7e-10, 29.8% id in 255 aa.


ensembl_gene_id: BP1230
symbol: norM
gene_biotype: protein_coding
description:
  Similar to Escherichia coli multidrug resistance protein NorM or B1663 SW:NORM_ECOLI (P37340) (457 aa) fasta scores: E(): 1.2e-33, 32% id in 450 aa, and to Neisseria meningitidis probable multidrug resistance protein NorM or Nmb0812 SW:NORM_NEIMB (Q9K015) (459 aa) fasta scores: E(): 3e-46, 35.21% id in 443 aa.


ensembl_gene_id: BP1231
symbol: BP1231
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis putative inner membrane protein Nma0497 TR:Q9JW86 (EMBL:AL162753) (558 aa) fasta scores: E(): 2.5e-18, 26.04% id in 599 aa, and to Xylella fastidiosa hypothetical protein Xf0929 TR:Q9PEU9 (EMBL:AE003932) (583 aa) fasta scores: E(): 2.8e-06, 27.3% id in 498 aa.


ensembl_gene_id: BP1232
symbol: rpmE2
gene_biotype: protein_coding
description:
  Similar to Xylella fastidiosa 50S ribosomal protein L31 Xf1534 TR:Q9PD45 (EMBL:AE003983) (80 aa) fasta scores: E(): 2.4e-14, 53.75% id in 80 aa, and to Streptococcus pneumoniae R6 50S ribosomal protein L31 rpmE TR:AAK99980 (EMBL:AE008490) (80 aa) fasta scores: E(): 2.9e-14, 51.94% id in 77 aa.


ensembl_gene_id: BP1233
symbol: kynA
gene_biotype: protein_coding
description:
  Putative tryptophan oxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.


ensembl_gene_id: BP1234
symbol: kynB
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.


ensembl_gene_id: BP1235
symbol: radC
gene_biotype: protein_coding
description:
  DNA repair protein; Similar to Escherichia coli DNA repair protein RadC or B3638 SW:RADC_ECOLI (P25531) (222 aa) fasta scores: E(): 2.9e-26, 37.44% id in 211 aa, and to Pseudomonas aeruginosa DNA repair protein RadC homolog RadC or Pa5319 SW:RADC_PSEAE (Q9HTN5) (224 aa) fasta scores: E(): 1.2e-33, 48.61% id in 216 aa; Belongs to the UPF0758 family.


ensembl_gene_id: BP1236
symbol: fkpB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli, and FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerase FkbP or SlpA or B0028 or Z0033 or Ecs0031 SW:FKBX_ECOLI (P22563) (148 aa) fasta scores: E(): 5.9e-11, 33.56% id in 146 aa, and to Vibrio cholerae peptidyl-prolyl cis-trans isomerase, FkbP-type Vc0684 TR:Q9KU45 (EMBL:AE004154) (144 aa) fasta scores: E(): 5.4e-14, 38.35% id in 146 aa.


ensembl_gene_id: BP1237
symbol: lytB
gene_biotype: protein_coding
description:
  Putative drug tolerance protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: BP1238
symbol: BP1238
gene_biotype: protein_coding
description:
  Similar to Pseudomonas sp glutathione-S-transferase homolog NagL TR:O86043 (EMBL:AF036940) (212 aa) fasta scores: E(): 4.3e-42, 53.52% id in 213 aa, and to Rhizobium loti glutathione S-transferase mlr1135 TR:Q98L85 (EMBL:AP002996) (216 aa) fasta scores: E(): 6.3e-47, 57.27% id in 213 aa.


ensembl_gene_id: BP1239
symbol: BP1239
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Helicobacter pylori J99 putative jhp0839 TR:Q9ZKU6 (EMBL:AE001513) (99 aa) fasta scores: E(): 0.0048, 30% id in 80 aa.


ensembl_gene_id: BP1240
symbol: BP1240
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti conserved hypothetical protein SMC00684 TR:CAC47266 (EMBL:AL591791) (381 aa) fasta scores: E(): 1.8e-27, 35.07% id in 345 aa, and to Agrobacterium tumefaciens Agr_l_2389p agr_l_2389 TR:AAK89764 (EMBL:AE008321) (411 aa) fasta scores: E(): 9.5e-27, 33.7% id in 359 aa, and to Escherichia coli hypothetical protein YjiA or b4352 SW:YJIA_ECOLI (P24203) (318 aa) fasta scores: E(): 4.7e-21, 31.15% id in 321 aa.


ensembl_gene_id: BP1241
symbol: BP1241
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Agrobacterium tumefaciens Agr_c_4536p TR:AAK88228 (EMBL:AE008162) (196 aa) fasta scores: E(): 3.4e-34, 53.96% id in 189 aa, and to Escherichia coli from bases 1061668 to 1073377 b1008 TR:P75894 (EMBL:AE000202) (196 aa) fasta scores: E(): 2.2e-34, 54.05% id in 185 aa.


ensembl_gene_id: BP1242
symbol: BP1242
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa0056 TR:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 1.8e-68, 61.33% id in 300 aa, and to Vibrio cholerae transcriptional regulator, LysR family Vca1055 TR:Q9KKP7 (EMBL:AE004431) (307 aa) fasta scores: E(): 4.1e-38, 43.49% id in 292 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP1243
symbol: BP1243
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: BP1244
symbol: BP1244
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr8253 protein TR:Q983N1 (EMBL:AP003013) (546 aa) fasta scores: E(): 5.6e-20, 31.49% id in 562 aa, and to Escherichia coli hypothetical protein YciL or B1269 SW:YCIL_ECOLI (P37765) (291 aa) fasta scores: E(): 2.1e-31, 50.17% id in 293 aa; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: BP1245
symbol: rimP
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: BP1246
symbol: nusA
gene_biotype: protein_coding
description:
  N utilization substance protein A; Participates in both transcription termination and antitermination.


ensembl_gene_id: BP1247
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: BP1248
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: BP1249
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: BP1250
symbol: typA
gene_biotype: protein_coding
description:
  GTP-binding elongation factor; Similar to Escherichia coli GTP-binding protein TypA/BipA TypA or BipA or B3871 SW:TYPA_ECOLI (P32132) (591 aa) fasta scores: E(): 2.4e-140, 63.34% id in 592 aa, and to Neisseria meningitidis GTP-binding protein TypA Nmb1199 TR:Q9JZB7 (EMBL:AE002467) (603 aa) fasta scores: E(): 1.5e-162, 72.91% id in 598 aa.


ensembl_gene_id: BP1251
symbol: BP1251
gene_biotype: protein_coding
description:
  Putative toxin; Similar to the previously sequenced Bordetella pertussis pertussis toxin subunit 2 precursor PtxB SW:TOX2_BORPE (P04978) (226 aa) fasta scores: E(): 1.6e-06, 30.43% id in 207 aa, and to Bordetella pertussis pertussis toxin subunit 3 precursor PtxC SW:TOX3_BORPE (P04979) (227 aa) fasta scores: E(): 1.8e-06, 32.67% id in 202 aa.


ensembl_gene_id: BP1253
symbol: BP1253
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Neisseria meningitidis hypothetical protein Nmb0283 TR:Q9K184 (EMBL:AE002385) (210 aa) fasta scores: E(): 1.1e-35, 55.89% id in 195 aa, and to Neisseria meningitidis hypothetical protein Nma2204 TR:Q9JSP2 (EMBL:AL162758) (210 aa) fasta scores: E(): 1.7e-35, 55.89% id in 195 aa; Belongs to the LOG family.


ensembl_gene_id: BP1254
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: BP1256
symbol: BP1256
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative carboxymethylenebutenolidase YsgA or B3830 SW:DLHH_ECOLI (P56262) (258 aa) fasta scores: E(): 3.8e-48, 51.58% id in 252 aa, and to Methylobacterium extorquens putative carboxymethylenebutenolidase SW:DLHH_METEX (P71505) (291 aa) fasta scores: E(): 7.5e-53, 55.93% id in 261 aa. Also similar to BP2713, 55.253% identity (55.469% ungapped) in 257 aa overlap.


ensembl_gene_id: BP1257
symbol: BP1257
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4822 TR:Q9HUY8 (EMBL:AE004895) (555 aa) fasta scores: E(): 1.1e-66, 44.82% id in 551 aa, and to Rhizobium meliloti hypothetical transmembrane protein Smc00233 TR:CAC46237 (EMBL:AL591788) (548 aa) fasta scores: E(): 1.8e-57, 37.47% id in 555 aa.


ensembl_gene_id: BP1258
symbol: sdaA
gene_biotype: protein_coding
description:
  L-serine dehydratase 1; Similar to Escherichia coli L-serine dehydratase 1 SdaA or B1814 SW:SDHL_ECOLI (P16095) (454 aa) fasta scores: E(): 1e-88, 53.89% id in 462 aa, and to Pseudomonas aeruginosa L-serine dehydratase SdaA or Pa2443 TR:Q9I139 (EMBL:AE004671) (458 aa) fasta scores: E(): 4.7e-121, 68.53% id in 464 aa; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: BP1259
symbol: queH
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).


ensembl_gene_id: BP1260
symbol: glnE
gene_biotype: protein_coding
description:
  Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]


ensembl_gene_id: BP1262
symbol: rho
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: BP1263
symbol: trxA
gene_biotype: protein_coding
description:
  Thioredoxin 1; Similar to Escherichia coli thioredoxin 1 TrxA or TsnC or FipA or B3781 SW:THIO_ECOLI (P00274) (108 aa) fasta scores: E(): 6.4e-28, 66.35% id in 107 aa, and to Pseudomonas aeruginosa thioredoxin TrxA or Trx or Pa5240 SW:THIO_PSEAE (Q9X2T1) (108 aa) fasta scores: E(): 7.2e-32, 75.92% id in 108 aa. Also similar to BP1713, 39.000% identity in 100 aa overlap.


ensembl_gene_id: BP1264
symbol: parE
gene_biotype: protein_coding
description:
  Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: BP1265
symbol: BP1265
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Streptomyces coelicolor putative membrane protein Sc10h5.06 TR:O86498 (EMBL:AL031232) (207 aa) fasta scores: E(): 1.8, 32.14% id in 140 aa.


ensembl_gene_id: BP1266
symbol: parC
gene_biotype: protein_coding
description:
  Topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: BP1267
symbol: BP1267
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Bacillus subtilis hypothetical 46.2 kDa protein in asnH-gntR intergenic region YxaH or S14H SW:YXAH_BACSU (P42107) (402 aa) fasta scores: E(): 8.4e-27, 31% id in 400 aa, and to Bacillus halodurans Bh3693 protein Bh3693 TR:Q9K6N5 (EMBL:AP001519) (405 aa) fasta scores: E(): 1.5e-26, 31.42% id in 401 aa.


ensembl_gene_id: BP1270
symbol: BP1270
gene_biotype: protein_coding
description:
  C-terminal region of a putative membrane protein (Pseudogene); HMMPfam hit to PF00892, Integral membrane protein DUF6.


ensembl_gene_id: BP1273
symbol: livF-2
gene_biotype: protein_coding
description:
  Putative aspartate racemase (Pseudogene); Pseudogene. This CDS appears to be missing the N-terminal region, this is probably due to the a large deletion immediately upstream. Similar to Shigella flexneri 2a hypothetical 25.4 kDa protein TR:AAL08433 (EMBL:AF326777) (229 aa) fasta scores: E(): 1.5e-07, 36.11% id in 108 aa, and to Pyrococcus abyssi aspartate racemase RacD-1 or pab0912 TR:Q9UYY1 (EMBL:AJ248287) (228 aa) fasta scores: E(): 9.8e-06, 31.42% id in 105 aa. Also similar to the C-terminus of BP0053, 55.140% identity (55.140% ungapped) in 107 aa overlap.


ensembl_gene_id: BP1274
symbol: livG-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG or B3455 or Z4825 or Ecs4302 SW:LIVG_ECOLI (P22730) (255 aa) fasta scores: E(): 2.1e-54, 60.63% id in 254 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraF or Pa1071 SW:BRAF_PSEAE (P21629) (255 aa) fasta scores: E(): 1.7e-55, 62.2% id in 254 aa.


ensembl_gene_id: BP1275
symbol: livM
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivM or B3456 SW:LIVM_ECOLI (P22729) (425 aa) fasta scores: E(): 8e-84, 57.7% id in 409 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease protein BraE or Pa1072 SW:BRAE_PSEAE (P21628) (417 aa) fasta scores: E(): 2.3e-88, 59.95% id in 422 aa.


ensembl_gene_id: BP1276
symbol: livH-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 3.7e-61, 58.52% id in 311 aa, and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivH or LivA SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 7.7e-62, 59.67% id in 310 aa.


ensembl_gene_id: BP1277
symbol: livJ
gene_biotype: protein_coding
description:
  Similar to Escherichia coli leu/ile/val-binding protein precursor LivJ or B3460 SW:LIVJ_ECOLI (P02917) (367 aa) fasta scores: E(): 7.4e-64, 48.05% id in 360 aa, and to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or Pa1074 SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): 1.6e-72, 52.02% id in 371 aa.


ensembl_gene_id: BP1279
symbol: BP1279
gene_biotype: protein_coding
description:
  Putative membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: BP1280
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: BP1281
symbol: ugpB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glycerol-3-phosphate-binding periplasmic protein precursor UgpB or B3453 SW:UGPB_ECOLI (P10904) (438 aa) fasta scores: E(): 4.6e-91, 54.21% id in 439 aa, and to Agrobacterium tumefaciens Agr_l_3248p TR:AAK90201 (EMBL:AE008365) (439 aa) fasta scores: E(): 1.1e-78, 48.02% id in 431 aa.


ensembl_gene_id: BP1282
symbol: ugpA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli sn-glycerol-3-phosphate transport system permease protein UgpA or B3452 SW:UGPA_ECOLI (P10905) (295 aa) fasta scores: E(): 2.1e-66, 59.65% id in 290 aa, and to Rhizobium meliloti probable glycerol-3-phosphate ABC transporter permease protein TR:CAC48803 (EMBL:AL603643) (293 aa) fasta scores: E(): 2e-74, 63.91% id in 291 aa.


ensembl_gene_id: BP1283
symbol: ugpE
gene_biotype: protein_coding
description:
  Sn-glycerol-3-phosphate transport system permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: BP1284
symbol: ugpC
gene_biotype: protein_coding
description:
  Sn-glycerol-3-phosphate transport ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.


ensembl_gene_id: BP1285
symbol: livJ-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli leu/ile/val-binding protein precursor LivJ or B3460 SW:LIVJ_ECOLI (P02917) (367 aa) fasta scores: E(): 3.8e-67, 49.86% id in 361 aa, and to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or Pa1074 SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): 8.8e-78, 58.1% id in 370 aa.


ensembl_gene_id: BP1286
symbol: BP1286
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hypothetical protein Cc2185 TR:Q9A6A9 (EMBL:AE005890) (207 aa) fasta scores: E(): 9.9e-30, 49.24% id in 199 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0201 TR:Q9I6T7 (EMBL:AE004458) (193 aa) fasta scores: E(): 4.3e-29, 48.04% id in 179 aa.


ensembl_gene_id: BP1289
symbol: BP1289
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); Signal peptide predicted for BP1288 by SignalP 2.0 HMM (Signal peptide probabilty 0.888) with cleavage site probability 0.675 between residues 33 and 34.


ensembl_gene_id: BP1290
symbol: BP1290
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Yersinia enterocolitica hypothetical 16.3 kDa protein TR:Q9F4G7 (EMBL:AY008264) (148 aa) fasta scores: E(): 5.1e-08, 31.75% id in 148 aa, and to Rhizobium meliloti hypothetical protein Smb20696 TR:CAC49803 (EMBL:AL603647) (161 aa) fasta scores: E(): 0.0009, 31.35% id in 118 aa.


ensembl_gene_id: BP1291
symbol: BP1291
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Yersinia enterocolitica hypothetical 17.2 kDa protein TR:Q9F4G8 (EMBL:AY008264) (152 aa) fasta scores: E(): 0.00042, 31.32% id in 166 aa, and to Rhizobium loti Mlr9079 protein Mlr9079 TR:Q982G8 (EMBL:AP003015) (160 aa) fasta scores: E(): 0.0017, 32.12% id in 165 aa.


ensembl_gene_id: BP1292
symbol: BP1292
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative lipoprotein YaeC precursor YaeC or B0197 SW:YAEC_ECOLI (P28635) (271 aa) fasta scores: E(): 9.1e-26, 36.53% id in 260 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2349 TR:Q9I1C9 (EMBL:AE004661) (264 aa) fasta scores: E(): 3e-36, 44.09% id in 254 aa.


ensembl_gene_id: BP1293
symbol: lldD-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli L-lactate dehydrogenase LldD or LctD or B3605 SW:LLDD_ECOLI (P33232) (396 aa) fasta scores: E(): 2.2e-37, 38.16% id in 359 aa, and to Streptomyces rishiriensis dehydrogenase CumR TR:Q9F8T4 (EMBL:AF235050) (389 aa) fasta scores: E(): 6.8e-42, 43.01% id in 365 aa.


ensembl_gene_id: BP1294
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase proenzyme; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: BP1296
symbol: BP1296
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4972 TR:Q9HUJ3 (EMBL:AE004910) (248 aa) fasta scores: E(): 1.5e-25, 37.61% id in 226 aa, and to Streptomyces coelicolor hypothetical 23.4 kDa protein Sc5c7.29 TR:O86726 (EMBL:AL031515) (226 aa) fasta scores: E(): 3.3, 29% id in 131 aa.


ensembl_gene_id: BP1297
symbol: BP1297
gene_biotype: protein_coding
description:
  Similar to Pyrococcus abyssi lipoate-protein ligase A related Pab1916 TR:Q9V0V8 (EMBL:AJ248285) (249 aa) fasta scores: E(): 2e-24, 37.02% id in 235 aa, and to Pyrococcus horikoshii 249aa long hypothetical lipoate protein ligase Ph1487 TR:O59156 (EMBL:AP000006) (249 aa) fasta scores: E(): 5e-23, 34.89% id in 235 aa.


ensembl_gene_id: BP1298
symbol: BP1298
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Halobacterium sp Vng6255C TR:Q9HHS3 (EMBL:AE005157) (89 aa) fasta scores: E(): 5.3e-08, 40.21% id in 92 aa.


ensembl_gene_id: BP1299
symbol: BP1299
gene_biotype: protein_coding
description:
  Putative acetyltransferase; Similar to Streptomyces griseus regulatory protein for C-P lyase PhnO-like TR:Q54244 (EMBL:D29961) (150 aa) fasta scores: E(): 7.3e-26, 52% id in 150 aa, and to Rhizobium loti probable transcriptional regulator Mll1819 TR:Q98JR4 (EMBL:AP002998) (150 aa) fasta scores: E(): 4.9e-35, 61.74% id in 149 aa.


ensembl_gene_id: BP1300
symbol: BP1300
gene_biotype: protein_coding
description:
  Similar to Zea mays glutathione transferase III Gst3B TR:Q9SM20 (EMBL:AJ010296) (221 aa) fasta scores: E(): 1.2e-10, 30.28% id in 208 aa, and to Pseudomonas aeruginosa probable glutathione S-transferase Pa1033 TR:Q9I4U1 (EMBL:AE004536) (213 aa) fasta scores: E(): 2.2e-68, 77.61% id in 210 aa; Belongs to the GST superfamily.


ensembl_gene_id: BP1301
symbol: BP1301
gene_biotype: protein_coding
description:
  Glutathione peroxidase; Similar to Schizosaccharomyces pombe glutathione peroxidase Gpx1 or Spbc32f12.03C SW:GSHJ_SCHPO (O59858) (158 aa) fasta scores: E(): 1.7e-32, 50.96% id in 155 aa, and to Pseudomonas aeruginosa glutathione peroxidase Pa2826 TR:Q9I017 (EMBL:AE004709) (161 aa) fasta scores: E(): 1.3e-39, 61.68% id in 154 aa.


ensembl_gene_id: BP1302
symbol: BP1302
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Caulobacter crescentus hypothetical protein Cc1979 TR:Q9A6V4 (EMBL:AE005871) (407 aa) fasta scores: E(): 1.1e-29, 32.41% id in 398 aa, and to Agrobacterium tumefaciens Agr_l_3459p TR:AAK90303 (EMBL:AE008375) (407 aa) fasta scores: E(): 2.1e-27, 32.67% id in 407 aa.


ensembl_gene_id: BP1305
symbol: BP1305
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Its C-terminal region is similar to hypothetical racemases from a wide range of bacteria. No significant similarity over the entire length of the CDS; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP1306
symbol: arsC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli arsenate reductase ArsC or ArsG or B3503 SW:ARSC_ECOLI (P37311) (141 aa) fasta scores: E(): 9.4e-21, 57.52% id in 113 aa, and to Rhizobium meliloti hypothetical arsenate reductase protein TR:CAC45654 (EMBL:AL591786) (140 aa) fasta scores: E(): 1.4e-23, 59.48% id in 116 aa. Also similar to BP1681, 56.140% identity (57.658% ungapped) in 114 aa overlap.


ensembl_gene_id: BP1307
symbol: BP1307
gene_biotype: protein_coding
description:
  Similar to Escherichia coli bacterioferritin comigratory protein Bcp or B2480 or Z3739 or Ecs3342 SW:BCP_ECOLI (P23480) (156 aa) fasta scores: E(): 1e-06, 28.84% id in 156 aa, and to Caulobacter crescentus bacterioferritin comigratory protein, putative Cc1673 TR:Q9A7P7 (EMBL:AE005842) (177 aa) fasta scores: E(): 2.1e-26, 49.41% id in 170 aa.


ensembl_gene_id: BP1311
symbol: BP1311
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); Signal peptide predicted for BP1310 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 1.000 between residues 24 and 25.


ensembl_gene_id: BP1313
symbol: BP1313
gene_biotype: protein_coding
description:
  Putative metalloprotease (Pseudogene); (GC)4 in pertussis; (GC)5 in parapertussis and bronchiseptica.


ensembl_gene_id: BP1314
symbol: BP1314
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti putative oxidoreductase protein Smb20656 TR:CAC49763 (EMBL:AL603646) (289 aa) fasta scores: E(): 5.6e-44, 44.52% id in 274 aa, and to Rhizobium meliloti probable oxidoreductase Sma2157 TR:AAK65830 (EMBL:AE007303) (327 aa) fasta scores: E(): 3.4e-32, 38.21% id in 280 aa.


ensembl_gene_id: BP1315
symbol: BP1315
gene_biotype: protein_coding
description:
  Universal stress family protein; Similar to Halobacterium sp Vng1536C TR:Q9HPP5 (EMBL:AE005067) (147 aa) fasta scores: E(): 3.5e-10, 36.23% id in 138 aa, and to Methanococcus jannaschii hypothetical protein Mj0531 SW:Y531_METJA (Q57951) (170 aa) fasta scores: E(): 7.4e-09, 32.62% id in 141 aa.


ensembl_gene_id: BP1318
symbol: BP1318
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); Signal peptide predicted for BP1317 by SignalP 2.0 HMM (Signal peptide probabilty 0.924) with cleavage site probability 0.365 between residues 22 and 23.


ensembl_gene_id: BP1319
symbol: BP1319
gene_biotype: protein_coding
description:
  Similar to Salmonella typhimurium putative transcriptional regulatory protein PtsJ SW:PTSJ_SALTY (P40193) (430 aa) fasta scores: E(): 1.7e-73, 54.31% id in 429 aa, and to Streptomyces coelicolor putative GntR-family transcriptional regulator Sc10a9.02C TR:Q9AKA2 (EMBL:AL583943) (445 aa) fasta scores: E(): 1.9e-46, 43.3% id in 418 aa.


ensembl_gene_id: BP1320
symbol: BP1320
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: BP1321
symbol: pdxK
gene_biotype: protein_coding
description:
  Pyridoxine kinase; B6-vitamer kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxine (PN), pyridoxal (PL), and pyridoxamine (PM), forming their respective 5'-phosphorylated esters, i.e. PNP, PLP and PMP.


ensembl_gene_id: BP1323
symbol: BP1323
gene_biotype: protein_coding
description:
  Two-component sensor histidine kinase (Pseudogene); HMMPfam hit to PF00072, Response regulator receiver domain.


ensembl_gene_id: BP1326
symbol: malQ
gene_biotype: protein_coding
description:
  Putative 4-alpha-glucanotransferase (pseudogene); CGC(-) in pertussis; CGC(A) in parapertussis and bronchiseptica.


ensembl_gene_id: BP1327
symbol: glgX
gene_biotype: protein_coding
description:
  Probable glycosyl hydrolase; Similar to Escherichia coli glycogen operon protein GlgX or GlyX or B3431 SW:GLGX_ECOLI (P15067) (657 aa) fasta scores: E(): 5.3e-95, 47.25% id in 656 aa, and to Pseudomonas aeruginosa probable glycosyl hydrolase Pa2160 TR:Q9I1V5 (EMBL:AE004643) (716 aa) fasta scores: E(): 8.2e-151, 55.61% id in 712 aa; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: BP1328
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: BP1329
symbol: BP1329
gene_biotype: protein_coding
description:
  Alpha-glucosidase; Similar to Pimelobacter sp trehalose synthase treS TR:P72235 (EMBL:D78198) (573 aa) fasta scores: E(): 2.4e-90, 58.22% id in 553 aa, and to Pseudomonas aeruginosa probable trehalose synthase Pa2152 TR:Q9I1W3 (EMBL:AE004642) (1100 aa) fasta scores: E(): 0, 58.35% id in 1107 aa.


ensembl_gene_id: BP1333
symbol: BP1333
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); This CDS is disrupted by the insertion of IS481. Similar to The N-terminus of Pseudomonas aeruginosa hypothetical protein Pa2244 SWALL:Q9I1M5 (EMBL:AE004650) (333 aa) fasta scores: E(): 0.2, 66.66% id in 21 aa.


ensembl_gene_id: BP1334
symbol: BP1334
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa2168 TR:Q9I1U7 (EMBL:AE004644) (258 aa) fasta scores: E(): 8.8e-66, 65% id in 240 aa.


ensembl_gene_id: BP1335
symbol: BP1335
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa2167 TR:Q9I1U8 (EMBL:AE004644) (365 aa) fasta scores: E(): 2.1e-39, 41.48% id in 364 aa.


ensembl_gene_id: BP1337
symbol: BP1337
gene_biotype: protein_coding
description:
  Putative membrane protein (Pseudogene); 6 probable transmembrane helices predicted for BP1336 by TMHMM2.0 at aa 49-71, 92-114, 129-151, 171-193, 203-225 and 246-268.


ensembl_gene_id: BP1339
symbol: clsB-2
gene_biotype: protein_coding
description:
  Probable phospholipase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


