# geneInfo

ensembl_gene_id: BP2743
symbol: BP2743
gene_biotype: protein_coding
description:
  Putative ABC transport protein, ATP-binding component; Similar to many putative membrane transport proteins e.g. Thermotoga maritima branched chain amino acid ABC transporter, ATP-binding protein Tm1139 TR:Q9X0M3 (EMBL:AE001771) (239 aa) fasta scores: E(): 9.5e-43, 55.5% id in 236 aa.


ensembl_gene_id: BP2744
symbol: BP2744
gene_biotype: protein_coding
description:
  Putative ABC transport protein, ATP-binding component; Similar to many putative membrane transport proteins e.g. Deinococcus radiodurans branched-chain amino acid ABC transporter, ATP-binding protein Dr2119 TR:Q9RSK5 (EMBL:AE002047) (259 aa) fasta scores: E(): 2.5e-44, 57.83% id in 249 aa.


ensembl_gene_id: BP2745
symbol: BP2745
gene_biotype: protein_coding
description:
  Putative ABC transport protein, ATP-binding component; Similar to many putative membrane transport proteins e.g. Deinococcus radiodurans branched-chain amino acid ABC transporter, permease protein dr1036 TR:Q9RVJ2 (EMBL:AE001955) (471 aa) fasta scores: E(): 2.8e-50, 48.04% id in 358 aa; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: BP2746
symbol: BP2746
gene_biotype: protein_coding
description:
  Putative ABC transport protein, inner membrane component; Similar to many putative membrane transport proteins including: Rhizobium meliloti probable high-affinity branched-chain amino acid transport permease ABC transporter protein TR:CAC47064 (EMBL:AL591790) (300 aa) fasta scores: E(): 9.8e-43, 48.52% id in 305 aa and Escherichia coli high-affinity branched-chain amino acid transport system permease protein livH or B3457 or Z4827 or Ecs4304 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 1e-39, 45.09% id in 306 aa.


ensembl_gene_id: BP2747
symbol: BP2747
gene_biotype: protein_coding
description:
  Similar to many putative membrane transport solute-binding proteins including: Rhizobium meliloti putative leucine-specific binding protein precursor TR:CAC47059 (EMBL:AL591790) (372 aa) fasta scores: E(): 3.8e-35, 36.21% id in 359 aa and Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or Pa1074 SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): 4.3e-32, 33.33% id in 357 aa.


ensembl_gene_id: BP2749
symbol: putA
gene_biotype: protein_coding
description:
  Bifunctional proline oxidoreductase/transcriptional repressor; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: BP2751
symbol: BP2751
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to many including: Neisseria meningitidis (serogroup A) hypothetical integral membrane protein Nma1929 or Nmb1671 TR:Q9JRE7 (EMBL:AL162757) (553 aa) fasta scores: E(): 4.3e-47, 32.27% id in 567 aa and Escherichia coli paraquat-inducible protein B PqiB SW:PQIB_ECOLI (P43671) (546 aa) fasta scores: E(): 9.6e-37, 33.14% id in 528 aa.


ensembl_gene_id: BP2752
symbol: BP2752
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Escherichia coli paraquat-inducible protein a pqia or pqi5a or b0950 SW:PQIA_ECOLI (P43670) (417 aa) fasta scores: E(): 8.1e-35, 36.09% id in 374 aa.


ensembl_gene_id: BP2753
symbol: clpA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli ATP-dependent Clp protease ATP-binding subunit ClpA or LopD or B0882 or Z1119 or Ecs0968 SW:CLPA_ECOLI (P15716) (758 aa) fasta scores: E(): 8.5e-171, 61.73% id in 763 aa. Also similar to BP1198, 37.133% identity (46.014% ungapped) in 886 aa overlap; Belongs to the ClpA/ClpB family.


ensembl_gene_id: BP2754
symbol: pbp
gene_biotype: protein_coding
description:
  Similar to Escherichia coli penicillin-binding protein 1c PbpC or B2519 SW:PBPC_ECOLI (P76577) (770 aa) fasta scores: E(): 1.3e-106, 46.04% id in 771 aa.


ensembl_gene_id: BP2755
symbol: BP2755
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Xylella fastidiosa hypothetical protein Xf1252 TR:Q9PDX7 (EMBL:AE003959) (1641 aa) fasta scores: E(): 9.2e-134, 37.23% id in 1708 aa.


ensembl_gene_id: BP2756
symbol: clpS
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: BP2757
symbol: BP2757
gene_biotype: protein_coding
description:
  Putative cold-shock protein; Similar to Salmonella typhimurium cold shock protein CspA SW:CSPA_SALTY (P37410) (69 aa) fasta scores: E(): 8.7e-15, 66.66% id in 66 aa. Also similar to many cold shock-like proteins e.g. Stigmatella aurantiaca cold shock-like protein CspA SW:CSPA_STIAU (P72366) (68 aa) fasta scores: E(): 6.8e-17, 72.3% id in 65 aa.


ensembl_gene_id: BP2758
symbol: BP2758
gene_biotype: protein_coding
description:
  Exported protein; Similar in parts to several including: Plasmid pSB102 hypothetical 17.7 kDa protein TR:CAC79159 (EMBL:AJ304453) (160 aa) fasta scores: E(): 4.9e-15, 36.91% id in 149 aa and Treponema pallidum conserved hypothetical protein tp0087 TR:O83125 (EMBL:AE001193) (179 aa) fasta scores: E(): 7.1e-14, 41.81% id in 110 aa.


ensembl_gene_id: BP2759
symbol: BP2759
gene_biotype: protein_coding
description:
  Putative thiolase; Similar to Acinetobacter calcoaceticus beta-ketoadipyl CoA thiolase PcaF SW:PCAF_ACICA (Q43974) (401 aa) fasta scores: E(): 7.9e-100, 68.67% id in 399 aa; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: BP2760
symbol: BP2760
gene_biotype: protein_coding
description:
  Similar to several chloride-channel proteins including: Burkholderia cepacia chloride-channel protein TR:AAK81672 (EMBL:AF029344) (443 aa) fasta scores: E(): 2.8e-45, 40.82% id in 414 aa and to Escherichia coli voltage-gated Clc-type chloride channel EriC or B0155 SW:ERIC_ECOLI (P37019) (473 aa) fasta scores: E(): 1.1e-17, 30.11% id in 455 aa.


ensembl_gene_id: BP2761
symbol: sodB
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: BP2762
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: BP2764
symbol: BP2764
gene_biotype: protein_coding
description:
  Similar to several e.g. Synechocystis sp putative biopolymer transport ExbB-like protein 3 sll1404 SW:EXB3_SYNY3 (P72604) (210 aa) fasta scores: E(): 2.4e-09, 29.89% id in 184 aa.


ensembl_gene_id: BP2765
symbol: BP2765
gene_biotype: protein_coding
description:
  Similar to many including Vibrio cholerae biopolymer transport protein Exbd2 or Vc1545 SW:EXD2_VIBCH (Q9ZHV9) (134 aa) fasta scores: E(): 5.3e-06, 30.3% id in 132 aa and to Bordetella pertussis ExbD protein TR:Q9S3M4 (EMBL:AJ132741) (155 aa) fasta scores: E(): 9.4e-06, 31.61% id in 136 aa.


ensembl_gene_id: BP2766
symbol: lpxK
gene_biotype: protein_coding
description:
  Putative tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: BP2767
symbol: BP2767
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli, and protein YcaR or B0917 or Z1263 or Ecs1000 SW:YCAR_ECOLI (P75844) (60 aa) fasta scores: E(): 2.6e-11, 53.57% id in 56 aa; Belongs to the UPF0434 family.


ensembl_gene_id: BP2768
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: BP2769
symbol: adK
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: BP2770
symbol: BP2770
gene_biotype: protein_coding
description:
  Probable short-chain dehydrogenase; Similar to many Prokaryotic and Eukaryotic dehydrogenases e.g. Pseudomonas aeruginosa probable short-chain dehydrogenase Pa2554 TR:Q9I0T0 (EMBL:AE004683) (255 aa) fasta scores: E(): 3.8e-60, 67.05% id in 255 aa and Drosophila melanogaster 3-hydroxyacyl-coa dehydrogenase type II Scu or Cg7113 SW:HCD2_DROME (O18404) (255 aa) fasta scores: E(): 6.6e-45, 55.9% id in 254 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: BP2771
symbol: murJ
gene_biotype: protein_coding
description:
  Conserved integral membrane protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: BP2772
symbol: BP2772
gene_biotype: protein_coding
description:
  Putative membrane protein; Weakly similar to many proposed trancriptional regulators e.g. Escherichia coli protein FecR or B4292 SW:FECR_ECOLI (P23485) (317 aa) fasta scores: E(): 4.4e-17, 30.38% id in 316 aa.


ensembl_gene_id: BP2774
symbol: BP2774
gene_biotype: protein_coding
description:
  Putative aldolase; Similar to Escherichia coli 2-dehydro-3-deoxyglucarate aldolase GarL or B3126 SW:GARL_ECOLI (P23522) (256 aa) fasta scores: E(): 6.7e-56, 59.12% id in 252 aa, and to Escherichia coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or HpaI SW:HPAI_ECOLI (Q47098) (262 aa) fasta scores: E(): 9e-44, 49.6% id in 252 aa; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: BP2780
symbol: BP2780
gene_biotype: protein_coding
description:
  Putative dihydroxy-acid dehydratase (pseudogene); (GGCC)2 in pertussis; (GGCC)3 in parapertussis and bronchiseptica; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: BP2782
symbol: BP2782
gene_biotype: protein_coding
description:
  Lipoprotein; Similar to many proteins of undefined function e.g. Pseudomonas aeruginosa hypothetical 8.0 kDa protein Pa3031 TR:O68801 (EMBL:AF053982) (73 aa) fasta scores: E(): 4.7e-10, 51.51% id in 66 aa.


ensembl_gene_id: BP2783
symbol: thrC
gene_biotype: protein_coding
description:
  Threonine synthase; Similar to Corynebacterium glutamicum threonine synthase ThrC SW:THRC_CORGL (P23669) (481 aa) fasta scores: E(): 5.5e-97, 56.56% id in 472 aa.


ensembl_gene_id: BP2784
symbol: BP2784
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa homoserine dehydrogenase Hom or Pa3736 SW:DHOM_PSEAE (P29365) (434 aa) fasta scores: E(): 2.9e-97, 63.76% id in 436 aa.


ensembl_gene_id: BP2785
symbol: BP2785
gene_biotype: protein_coding
description:
  Putative aminotransferase; Similar to Escherichia coli hypothetical aminotransferase YfdZ or B2379 SW:YFDZ_ECOLI (P77434) (412 aa) fasta scores: E(): 4.8e-129, 79.64% id in 393 aa.


ensembl_gene_id: BP2786
symbol: BP2786
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar in parts to Methylobacillus flagellatum membrane protein TR:Q9RAN1 (EMBL:L78665) (122 aa) fasta scores: E(): 3e-05, 35.17% id in 145 aa.


ensembl_gene_id: BP2787
symbol: BP2787
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to many bacterioferritin comigratory proteins the function of which are unclear e.g. Pseudomonas aeruginosa Bcp or Pa1008 TR:Q9I4W5 (EMBL:AE004533) (157 aa) fasta scores: E(): 1.9e-35, 62.33% id in 154 aa.


ensembl_gene_id: BP2788
symbol: BP2788
gene_biotype: protein_coding
description:
  Hypothetical protein; The C-terminus of the product of this CDS is similar to many hypothetical proteins e.g. Vibrio cholerae hypothetical protein Vc2507 vc2507 TR:Q9KP69 (EMBL:AE004321) (458 aa) fasta scores: E(): 1.3e-48, 42.85% id in 462 aa. The N-terminus displays no significant database hits and conrtains a proline rich repeat region with 4xPAPA repeats.


ensembl_gene_id: BP2789
symbol: BP2789
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Weakly similar to a number of pyridoxal phosphate biosynthetic proteins e.g. Escherichia coli PdxA or B0052 SW:PDXA_ECOLI (P19624) (329 aa) fasta scores: E(): 9.4e-36, 38.43% id in 320 aa. Also similar to BP1813, 46.233% identity (49.451% ungapped) in 292 aa overlap.


ensembl_gene_id: BP2790
symbol: BP2790
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to several proteins of undefined function e.g. Pseudomonas aeruginosa hypothetical protein Pa2026 SW:YK26_PSEAE (P39879) (333 aa) fasta scores: E(): 8.2e-82, 65.83% id in 322 aa.


ensembl_gene_id: BP2791
symbol: dnaB
gene_biotype: protein_coding
description:
  DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: BP2794
symbol: rpsR
gene_biotype: protein_coding
description:
  30s ribosomal protein s18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: BP2795
symbol: priB
gene_biotype: protein_coding
description:
  Primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.


ensembl_gene_id: BP2798
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: BP2799
symbol: BP2799
gene_biotype: protein_coding
description:
  Similar to Bradyrhizobium japonicum probable geranyltranstransferase SW:ISPA_BRAJA (Q45220) (332 aa) fasta scores: E(): 2.2e-42, 49.65% id in 288 aa; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: BP2800
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: BP2801
symbol: BP2801
gene_biotype: protein_coding
description:
  Similar in the C-terminus to many putative transcriptional regulators e.g. Rhizobium meliloti putative transcriptional regulator IclR family protein Smb20586 TR:CAC49898 (EMBL:AL603647) (251 aa) fasta scores: E(): 6.9e-13, 30.08% id in 246 aa. Similar over the entire range to Pseudomonas putida pca regulon regulatory protein PcaR SW:PCAR_PSEPU (Q52154) (291 aa) fasta scores: E(): 3.1e-12, 27.64% id in 293 aa.


ensembl_gene_id: BP2802
symbol: BP2802
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to several proteins of undefined function e.g. Bordetella pertussis hypothetical 34.9 kDa protein SW:YBR5_BORPE (O30446) (323 aa) fasta scores: E(): 8.8e-37, 34.29% id in 312 aa.


ensembl_gene_id: BP2804
symbol: BP2804
gene_biotype: protein_coding
description:
  Putative iron-sulfur protein; Similar to Bordetella bronchiseptica AlcE, involved in the iron siderophore alcaligin biosynthesis, SWALL:O52833 (EMBL:AJ000061) (397 aa) fasta scores: E(): 3.3e-120, 71.57% id in 380 aa. Also similar to BP2460, 71.842% identity in 380 aa overlap.


ensembl_gene_id: BP2807
symbol: BP2807
gene_biotype: protein_coding
description:
  Similar to several putative thioesterases e.g. Escherichia coli putative acyl-CoA thioester hydrolase precursor YciA SW:YCIA_ECOLI (P04379) (132 aa) fasta scores: E(): 1.3e-15, 43.65% id in 126 aa.


ensembl_gene_id: BP2808
symbol: BP2808
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to severale.g. Pseudomonas aeruginosa hypothetical protein Pa5383 TR:Q9HTI1 (EMBL:AE004951) (355 aa) fasta scores: E(): 1.5e-45, 42.45% id in 351 aa.


ensembl_gene_id: BP2809
symbol: BP2809
gene_biotype: protein_coding
description:
  Similar to many transcriptional regulators e.g. Chromatium vinosum rubisco operon transcriptional regulator RbcR SW:RBCR_CHRVI (P25544) (302 aa) fasta scores: E(): 1e-21, 36.96% id in 257 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2810
symbol: BP2810
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to many e.g. Pseudomonas aeruginosa probable hydrolase Pa2922 TR:Q9HZS5 (EMBL:AE004718) (389 aa) fasta scores: E(): 3.3e-76, 49.87% id in 395 aa and to Arabidopsis thaliana IAA-amino acid hydrolase 3 precursor Iar3 or Ill1 or At5g56650 SW:ILR3_ARATH (P54969) (438 aa) fasta scores: E(): 1.6e-50, 40.62% id in 384 aa. Also similar to BP3857 (57.179% identity in 397 aa overlap), and to BP3036 (49.873% identity in 393 aa overlap).


ensembl_gene_id: BP2811
symbol: fadD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli long-chain-fatty-acid--CoA ligase FadD SW:LCFA_ECOLI (P29212) (561 aa) fasta scores: E(): 4e-115, 54.93% id in 557 aa.


ensembl_gene_id: BP2813
symbol: BP2813
gene_biotype: protein_coding
description:
  Inositol monophosphatase-family protein; Similar in the C-terminus to many extragenic suppressor proteins e.g. Escherichia coli extragenic suppressor protein SuhB or SsyA or B2533 SW:SUHB_ECOLI (P22783) (267 aa) fasta scores: E(): 2.4e-20, 41.87% id in 277 aa. Also similar to Vibrio cholerae inositol monophosphate family protein vc0745 TR:Q9KTY5 (EMBL:AE004160) (288 aa) fasta scores: E(): 3.7e-16, 39.24% id in 265 aa. Also similar to BP1902, 40.000% identity (43.200% ungapped) in 270 aa overlap.


ensembl_gene_id: BP2815
symbol: BP2815
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); 16 bp deletion in pertussis relative to parapertussis and bronchiseptica; Belongs to the glycosyl hydrolase 31 family.


ensembl_gene_id: BP2816
symbol: metN
gene_biotype: protein_coding
description:
  ABC transport protein, ATP-binding component; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: BP2817
symbol: BP2817
gene_biotype: protein_coding
description:
  ABC transport protein, inner membrane component; Similar to many ABC transport proteins e.g. Rhizobium loti ABC transporter, permease protein Mll4791 TR:Q98DA3 (EMBL:AP003005) (218 aa) fasta scores: E(): 3.7e-40, 65.32% id in 199 aa.


ensembl_gene_id: BP2818
symbol: BP2818
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti putative outer membrane lipoprotein Smc03157 TR:CAC47467 (EMBL:AL591792) (258 aa) fasta scores: E(): 3.2e-54, 58.39% id in 262 aa; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: BP2820
symbol: BP2820
gene_biotype: protein_coding
description:
  Putative alcohol dehydrogenase; Similar to several including: Pseudomonas putida alcohol dehydrogenase AdhA TR:O68647 (EMBL:AF052750) (382 aa) fasta scores: E(): 2e-38, 39.06% id in 384 aa and to Escherichia coli ethanolamine utilization protein EutG or b2453 SW:EUTG_ECOLI (P76553) (395 aa) fasta scores: E(): 9.7e-33, 33.77% id in 379 aa.


ensembl_gene_id: BP2824
symbol: BP2824
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Methanothermobacter thermautotrophicus conserved protein Mth1421 TR:O27472 (EMBL:AE000904) (399 aa) fasta scores: E(): 1.9e-34, 33.5% id in 391 aa.


ensembl_gene_id: BP2825
symbol: BP2825
gene_biotype: protein_coding
description:
  Putative GntR-family transcriptional regulatory protein; Similar to Rhizobium meliloti putative GntR-family transcription factor Sma1442 TR:AAK65446 (EMBL:AE007265) (254 aa) fasta scores: E(): 2.5e-11, 28.82% id in 229 aa.


ensembl_gene_id: BP2826
symbol: BP2826
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to several e.g. Rhizobium meliloti conserved hypothetical protein sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 8.5e-40, 37.22% id in 317 aa.


ensembl_gene_id: BP2830
symbol: BP2830
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); Pseudogene. This CDS contains an in-frame TAG stop codon. Weakly similar to various hypothetical proteins.


ensembl_gene_id: BP2831
symbol: BP2831
gene_biotype: protein_coding
description:
  ABC transport protein, inner membrane component; Similar to many putative membrane transport proteins e.g. Rhizobium meliloti putative sugar uptake ABC transporter permease protein Smb21458 TR:CAC49684 (EMBL:AL603646) (291 aa) fasta scores: E(): 2.1e-29, 35.98% id in 264 aa.


ensembl_gene_id: BP2832
symbol: BP2832
gene_biotype: protein_coding
description:
  ABC transport protein, ATP-binding component; Similar to many putative membrane transport proteins e.g. Rhizobium loti sugar binding protein of ABC transporter mll1716 TR:Q98JZ1 (EMBL:AP002998) (383 aa) fasta scores: E(): 2.7e-41, 40.47% id in 378 aa.


ensembl_gene_id: BP2836
symbol: BP2836
gene_biotype: protein_coding
description:
  Putative DNA-binding protein; Weakly similar to Rhizobium loti transcription regulator Mll9009 TR:Q982L6 (EMBL:AP003015) (269 aa) fasta scores: E(): 6.5e-05, 24.41% id in 213 aa.


ensembl_gene_id: BP2837
symbol: BP2837
gene_biotype: protein_coding
description:
  Putative MerR-family transcriptional regulator; Similar to Pseudomonas aeruginosa redox-sensitive transcriptional activator SoxR or Pa2273 SW:SOXR_PSEAE (Q51506) (156 aa) fasta scores: E(): 1.6e-33, 62.41% id in 149 aa.


ensembl_gene_id: BP2838
symbol: BP2838
gene_biotype: protein_coding
description:
  Similar to many DNA hydrolases responsble for DNA damage repair e.g. Escherichia coli DNA-3-methyladenine glycosylase I Tag or B3549 SW:3MG1_ECOLI (P05100) (187 aa) fasta scores: E(): 6.5e-31, 48.6% id in 179 aa.


ensembl_gene_id: BP2839
symbol: BP2839
gene_biotype: protein_coding
description:
  Exported protein, conserved; Highly similar to several proteins of undefined function e.g. Pseudomonas aeruginosa hypothetical protein Pa4879 pa4879 TR:Q9HUT4 (EMBL:AE004901) (689 aa) fasta scores: E(): 9e-116, 58.92% id in 706 aa.


ensembl_gene_id: BP2840
symbol: BP2840
gene_biotype: protein_coding
description:
  Similar to many proposed regulators e.g. Rhizobium loti probable transcriptional regulator Mlr0535 TR:Q98ML2 (EMBL:AP002995) (204 aa) fasta scores: E(): 6e-33, 51.92% id in 208 aa.


ensembl_gene_id: BP2841
symbol: BP2841
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase Pa0182 TR:Q9I6V0 (EMBL:AE004456) (250 aa) fasta scores: E(): 1.5e-43, 55.2% id in 250 aa and to Bacillus subtilis 3-oxoacyl-[acyl-carrier protein] reductase FabG SW:FABG_BACSU (P51831) (246 aa) fasta scores: E(): 7.9e-25, 37.86% id in 243 aa.


ensembl_gene_id: BP2845
symbol: BP2845
gene_biotype: protein_coding
description:
  Putative exported protein (pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. No significant database hits.


ensembl_gene_id: BP2849
symbol: BP2849
gene_biotype: protein_coding
description:
  Similar to several transcriptional regulators e.g. Escherichia coli hca operon transcriptional activator HcaR or PhdR or B2537 SW:HCAR_ECOLI (Q47141) (296 aa) fasta scores: E(): 9.7e-08, 27.3% id in 282 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2850
symbol: panB
gene_biotype: protein_coding
description:
  Probable 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: BP2851
symbol: BP2851
gene_biotype: protein_coding
description:
  Highly similar to the Bordetella pertussis outer membrane porin protein precursor (BP0840) SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): 6.4e-58, 53.72% id in 389 aa. Also similar to BP0267 (63.345% identity in 281 aa overlap), and BP0840 (53.728% identity in 389 aa overlap).


ensembl_gene_id: BP2853
symbol: BP2853
gene_biotype: protein_coding
description:
  Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa.


ensembl_gene_id: BP2854
symbol: BP2854
gene_biotype: protein_coding
description:
  Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa.


ensembl_gene_id: BP2855
symbol: BP2855
gene_biotype: protein_coding
description:
  Similar to many membrane transport proteins e.g. Escherichia coli alpha-ketoglutarate permease KgtP or WitA or B2587 SW:KGTP_ECOLI (P17448) (432 aa) fasta scores: E(): 1.3e-45, 34.81% id in 428 aa.


ensembl_gene_id: BP2856
symbol: BP2856
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several proteins of unknown function e.g. Escherichia coli hypothetical 31.7 kDa protein SW:YPT2_ECOLI (Q99390) (286 aa) fasta scores: E(): 8.1e-15, 27.11% id in 284 aa.


ensembl_gene_id: BP2857
symbol: BP2857
gene_biotype: protein_coding
description:
  Putative LysR-family transcriptional regulator; Similar to several including: Caulobacter crescentus isoleucine biosynthesis transcriptional activator Ilvr or Cc3045 SW:ILVR_CAUCR (P52670) (296 aa) fasta scores: E(): 1.2e-18, 33.11% id in 311 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2858
symbol: tyrB-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli aromatic-amino-acid aminotransferase TyrB or B4054 SW:TYRB_ECOLI (P04693) (397 aa) fasta scores: E(): 2.7e-89, 59.44% id in 397 aa. Also similar to BP1795, 49.622% identity (49.622% ungapped) in 397 aa overlap.


ensembl_gene_id: BP2859
symbol: BP2859
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many proteins of unknown function e.g. Escherichia coli O157:H7 hypothetical 25.8 kDa protein Ecs2700 TR:BAB36123 (EMBL:AP002559) (231 aa) fasta scores: E(): 3.5e-32, 50.46% id in 214 aa.


ensembl_gene_id: BP2860
symbol: BP2860
gene_biotype: protein_coding
description:
  Probable cation-transporting ATPase; Highly similar to Rhizobium meliloti copper-transporting ATPase ActP SW:ATCU_RHIME (Q9X5X3) (827 aa) fasta scores: E(): 1.5e-179, 66.58% id in 802 aa, and to Synechococcus sp cation-transporting ATPase PacS SW:ATCS_SYNP7 (P37279) (747 aa) fasta scores: E(): 2.3e-110, 49.33% id in 748 aa. Note the differing predicted N-termini of these proteins. The Bordetella protein is predicted to be ~18 aa shorter than the other two examples. The upstream IS481 element may offer one explanation for this. It is also not clear if the insertion of this IS element af [...]


ensembl_gene_id: BP2862
symbol: BP2862
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Rhizobium loti Mll7047 protein TR:Q987H8 (EMBL:AP003010) (126 aa) fasta scores: E(): 1.1e-09, 37.06% id in 116 aa.


ensembl_gene_id: BP2863
symbol: BP2863
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Rhizobium loti Mlr0372 protein TR:Q98MZ7 (EMBL:AP002994) (296 aa) fasta scores: E(): 8.7e-07, 26.91% id in 301 aa.


ensembl_gene_id: BP2864
symbol: BP2864
gene_biotype: protein_coding
description:
  Similar to many putative alcohol dehydrogenases e.g. Halobacterium sp alcohol dehydrogenase Adh4 or Vng1821G TR:Q9HP38 (EMBL:AE005083) (347 aa) fasta scores: E(): 1.7e-29, 42.33% id in 352 aa.


ensembl_gene_id: BP2865
symbol: BP2865
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Sphingomonas aromaticivorans hypothetical 14.5 kDa protein TR:O85848 (EMBL:AF079317) (137 aa) fasta scores: E(): 5.1e-06, 31.91% id in 141 aa.


ensembl_gene_id: BP2867
symbol: BP2867
gene_biotype: protein_coding
description:
  Putative exported protein (pseudogene); (G)4 in pertussis, (G)3 in parapertussis and bronchiseptica.


ensembl_gene_id: BP2868
symbol: BP2868
gene_biotype: protein_coding
description:
  Putative ABC transport proteins, inner membrane component; Similar to many membrane transport proteins e.g. Rhizobium loti ABC transporter, permease protein mlr6798 TR:Q988C6 (EMBL:AP003010) (275 aa) fasta scores: E(): 5.8e-26, 34.28% id in 245 aa, and to Escherichia coli putative aliphatic sulfonates transport permease protein ssuc ssuc or b0934 SW:SSUC_ECOLI (P75851) (263 aa) fasta scores: E(): 4.6e-19, 28.92% id in 242 aa.


ensembl_gene_id: BP2869
symbol: BP2869
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; The very N-terminus of the predicted product of this CDS is similar to Rhizobium loti Msr6094 protein TR:Q98A99 (EMBL:AP003008) (79 aa) fasta scores: E(): 9.3e-05, 44.59% id in 74 aa. Otherwise there are no significant database hits. Similar to BP0779, 43.785% identity (43.909% ungapped) in 354 aa overlap.


ensembl_gene_id: BP2870
symbol: BP2870
gene_biotype: protein_coding
description:
  Similar to many putative acid CoA ligases e.g. Rhizobium loti Mlr1843 TR:Q98JP7 (EMBL:AP002998) (495 aa) fasta scores: E(): 4.9e-39, 33.12% id in 486 aa.


ensembl_gene_id: BP2871
symbol: BP2871
gene_biotype: protein_coding
description:
  Hypothetical protein; No significant database hits. Similar to BP3011, 45.562% identity (47.531% ungapped) in 169 aa overlap.


ensembl_gene_id: BP2872
symbol: BP2872
gene_biotype: protein_coding
description:
  Similar to many proposed transcriptional regulators e.g. Rhizobium meliloti putative transcription regulator protein Smc00131 TR:CAC46458 (EMBL:AL591788) (162 aa) fasta scores: E(): 7.2e-38, 63.57% id in 151 aa.


ensembl_gene_id: BP2873
symbol: BP2873
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to many proteins of undefined function e.g. Rhizobium meliloti hypothetical protein Sma1927 sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.9e-52, 48.91% id in 321 aa.


ensembl_gene_id: BP2874
symbol: ribE
gene_biotype: protein_coding
description:
  Highly similar to Escherichia coli riboflavin synthase alpha chain RibE or RibC or b1662 SW:RISA_ECOLI (P29015) (213 aa) fasta scores: E(): 1.8e-24, 43.51% id in 216 aa.


ensembl_gene_id: BP2875
symbol: BP2875
gene_biotype: protein_coding
description:
  Amidase; Similar to Pseudomonas putida amidase SW:AMID_PSEPU (O69768) (466 aa) fasta scores: E(): 5.2e-18, 27.98% id in 461 aa and to Rhizobium loti glu-trna amidotransferase, subunit a mlr6081 TR:Q98AB0 (EMBL:AP003008) (478 aa) fasta scores: E(): 3.4e-23, 31.6% id in 443 aa.


ensembl_gene_id: BP2878
symbol: BP2878
gene_biotype: protein_coding
description:
  Transposase (Pseudogene); Signal peptide predicted for BP2877 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.632 between residues 23 and 24; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2879
symbol: BP2879
gene_biotype: protein_coding
description:
  Similar to many membrane transport proteins e.g. Escherichia coli cyanate transport protein CynX or b0341 SW:CYNX_ECOLI (P17583) (384 aa) fasta scores: E(): 1.9e-46, 41.36% id in 382 aa.


ensembl_gene_id: BP2880
symbol: BP2880
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Pseudomonas aeruginosa probable deaminase Pa2499 TR:Q9I0Y3 (EMBL:AE004677) (151 aa) fasta scores: E(): 8e-31, 59.45% id in 148 aa.


ensembl_gene_id: BP2881
symbol: BP2881
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many proteins carrying the mainly Eukaryotic Ankyrin repeat motif e.g. Pseudomonas aeruginosa hypothetical protein Pa2498 pa2498 TR:Q9I0Y4 (EMBL:AE004677) (210 aa) fasta scores: E(): 2.2e-42, 66.19% id in 213 aa, and to Burkholderia solanacearum probable ankyrin repeat harboring signal peptide protein rsc0781 TR:CAD14483 (EMBL:AL646061) (261 aa) fasta scores: E(): 2.7e-26, 49.73% id in 189 aa.


ensembl_gene_id: BP2882
symbol: BP2882
gene_biotype: protein_coding
description:
  Similar to many proposed transcriptional regulators including: Streptomyces coelicolor Sc4b5.05C TR:Q9ZBW3 (EMBL:AL034443) (292 aa) fasta scores: E(): 1.5e-24, 38.43% id in 281 aa and to Pseudomonas aeruginosa Pa2497 TR:Q9I0Y5 (EMBL:AE004677) (292 aa) fasta scores: E(): 8.5e-67, 66.31% id in 285 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2885
symbol: BP2885
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to many proteins of undefined function e.g. Pseudomonas aeruginosa hypothetical protein Pa2651 TR:Q9I0I7 (EMBL:AE004694) (352 aa) fasta scores: E(): 1.2e-93, 76.1% id in 339 aa, and to Escherichia coli hypothetical protein YdiK or B1688 SW:YDIK_ECOLI (P77175) (370 aa) fasta scores: E(): 3.8e-19, 28.32% id in 346 aa.


ensembl_gene_id: BP2888
symbol: BP2888
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to Chromatium vinosum hydrogenase cytochrome B-type subunit homolog TR:Q46471 (EMBL:U25811) (231 aa) fasta scores: E(): 4.2e-30, 45.07% id in 213 aa.


ensembl_gene_id: BP2889
symbol: BP2889
gene_biotype: protein_coding
description:
  Putative c'cytochrome; Similar to Alcaligenes xylosoxydans xylosoxydans cytochrome c' SW:CYCP_ALCXX (P00138) (127 aa) fasta scores: E(): 1.2e-39, 81.89% id in 127 aa and to Neisseria meningitidis putative C-type cytochrome Nma1119 TR:Q9JUV4 (EMBL:AL162755) (152 aa) fasta scores: E(): 2.3e-15, 38.81% id in 152 aa.


ensembl_gene_id: BP2890
symbol: purB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli adenylosuccinate lyase PurB or b1131 SW:PUR8_ECOLI (P25739) (456 aa) fasta scores: E(): 1.7e-108, 61.77% id in 450 aa, and to Haemophilus influenzae adenylosuccinate lyase PurB or hi0639 SW:PUR8_HAEIN (P44797) (456 aa) fasta scores: E(): 4.6e-107, 60.44% id in 450 aa.


ensembl_gene_id: BP2891
symbol: BP2891
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to serveral including: Escherichia coli hypothetical Gst-like protein YibF or b3592 SW:YIBF_ECOLI (P32105) (202 aa) fasta scores: E(): 1.5e-26, 40.88% id in 203 aa, and to Escherichia coli O157:H7 EDL933 putative S-transferase YibF TR:AAG58736 (EMBL:AE005586) (202 aa) fasta scores: E(): 1.5e-26, 40.88% id in 203 aa.


ensembl_gene_id: BP2892
symbol: BP2892
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0340 pa0340 TR:Q9I6F3 (EMBL:AE004472) (267 aa) fasta scores: E(): 3e-32, 41.4% id in 256 aa, and to Neisseria meningitidis hypothetical protein Nmb1319 nmb1319 TR:Q9JZ32 (EMBL:AE002480) (257 aa) fasta scores: E(): 1.4e-28, 37.74% id in 257 aa.


ensembl_gene_id: BP2893
symbol: trmU
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: BP2894
symbol: BP2894
gene_biotype: protein_coding
description:
  Similar to several including: Pseudomonas aeruginosa probable transcriptional regulator Pa0448 TR:Q9I670 (EMBL:AE004482) (302 aa) fasta scores: E(): 1.3e-48, 43.05% id in 295 aa and to Escherichia coli glycine cleavage system transcriptional activator GcvA or b2808 or z4125 or Ecs3668 SW:GCVA_ECOLI (P32064) (305 aa) fasta scores: E(): 5.1e-32, 34.78% id in 299 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2895
symbol: BP2895
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to many including: Rhizobium meliloti hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.5e-51, 45.79% id in 321 aa and to Streptomyces coelicolor putative secreted protein 2Scg38.31 TR:Q9EWY8 (EMBL:AL445503) (332 aa) fasta scores: E(): 6e-14, 26.39% id in 322 aa.


ensembl_gene_id: BP2896
symbol: BP2896
gene_biotype: protein_coding
description:
  Similar to many proposed hydrolases including: Rhizobium loti N-formylglutamate amidohydrolase Mll3040 TR:Q98H42 (EMBL:AP003001) (313 aa) fasta scores: E(): 4.9e-33, 40.6% id in 266 aa, and to Rhizobium loti N-formylglutamate amidohydrolase, hutg mlr8322 TR:Q983H9 (EMBL:AP003013) (273 aa) fasta scores: E(): 7e-11, 30.14% id in 282 aa.


ensembl_gene_id: BP2897
symbol: pntaA
gene_biotype: protein_coding
description:
  Similar to Rhodospirillum rubrum NAD(P) transhydrogenase, alpha subunit part 1 PntaA or NntA1 SWALL:Q60164 (EMBL:U05294) (384 aa) fasta scores: E(): 8.2e-59, 51.32% id in 378 aa, and to Ralstonia solanacearum probable NAD(P) transhydrogenase PntaA or Rsc2730 or Rs00124 SWALL:CAD16437 (EMBL:AL646071) (379 aa) fasta scores: E(): 2.6e-96, 73.51% id in 370 aa.


ensembl_gene_id: BP2900
symbol: pntB
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase subunit beta (pseudogene); G in pertussis; (AC)G in parapertussis and bronchiseptica.


ensembl_gene_id: BP2901
symbol: bfeA
gene_biotype: protein_coding
description:
  Ferric enterobactin receptor; Previously sequenced as Bordetella pertussis ferric enterobactin receptor BfeA TR:Q45341 (EMBL:U13950) (735 aa) fasta scores: E(): 0, 99.72% id in 737 aa.


ensembl_gene_id: BP2902
symbol: BP2902
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2689 SWALL:Q9I0F2 (EMBL:AE004697) (304 aa) fasta scores: E(): 2.4e-25, 39.79% id in 289 aa, and to Escherichia coli IroE protein SWALL:CAC43425 (EMBL:X16664) (318 aa) fasta scores: E(): 1.8e-16, 34.01% id in 244 aa; Weakly similar to several proteins of undefined function e.g. Pseudomonas aeruginosa hypothetical protein Pa2689 TR:Q9I0F2 (EMBL:AE004697) (304 aa) fasta scores: E(): 2.4e-25, 39.79% id in 289 aa.


ensembl_gene_id: BP2903
symbol: glcF
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glycolate oxidase iron-sulfur subunit GlcF or Gox or b2978 SW:GLCF_ECOLI (P52074) (407 aa) fasta scores: E(): 3.4e-77, 52.69% id in 408 aa and to Rhizobium loti glycolate oxidase subunit Mlr6920 TR:Q987T7 (EMBL:AP003010) (441 aa) fasta scores: E(): 4.7e-34, 42.79% id in 423 aa.


ensembl_gene_id: BP2904
symbol: glcE
gene_biotype: protein_coding
description:
  Glycolate oxidase subunit; Similar to Pseudomonas aeruginosa glycolate oxidase subunit GlcE or Pa5354 TR:Q9HTK4 (EMBL:AE004947) (359 aa) fasta scores: E(): 2.9e-36, 51.51% id in 363 aa, and to Escherichia coli glycolate oxidase subunit GlcE or Gox or b2977.1 SW:GLCE_ECOLI (P52073) (350 aa) fasta scores: E(): 7.5e-36, 47.93% id in 363 aa.


ensembl_gene_id: BP2905
symbol: glcD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glycolate oxidase subunit GlcD or Gox or b2979 SW:GLCD_ECOLI (P52075) (499 aa) fasta scores: E(): 1.7e-117, 60.2% id in 495 aa, and to Pseudomonas aeruginosa glycolate oxidase subunit GlcD or Pa5355 TR:Q9HTK3 (EMBL:AE004947) (499 aa) fasta scores: E(): 8.2e-120, 62.02% id in 503 aa.


ensembl_gene_id: BP2906
symbol: BP2906
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to many including: Rhizobium loti probable D-lactate dehydrogenase Mll1488 TR:Q98KG4 (EMBL:AP002997) (575 aa) fasta scores: E(): 5.3e-98, 55.26% id in 456 aa and to Kluyveromyces lactis D-lactate dehydrogenase [cytochrome] mitochondrial precursor Dld1 SW:DLD1_KLULA (Q12627) (579 aa) fasta scores: E(): 3.2e-62, 40.61% id in 426 aa and to Escherichia coli glycolate oxidase subunit GlcD GlcD or Gox or b2979 SW:GLCD_ECOLI (P52075) (499 aa) fasta scores: E(): 1e-39, 31.38% id in 462 aa. Also weakly similar to the adjoining CDS: BP2905 fasta scores: E(): 3.8e [...]


ensembl_gene_id: BP2907
symbol: fhaL
gene_biotype: protein_coding
description:
  Adhesin; Similar to Bordetella bronchiseptica adhesin FhaB or BP1879 TR:Q9JP78 (EMBL:AF111796) (3634 aa)fasta scores: E(): 9e-125, 33.527% id in 2750 aa and to Bordetella pertussis filamentous hemagglutinin fhaB SW:FHAB_BORPE (P12255) (3591 aa) fasta scores: E(): 1.4e-123, 33.67% id in 2705 aa. The product of this CDS is also similar to B. pertussis BP2667 E(): 7.1e-117, 37.949% identity in 2672 aa.


ensembl_gene_id: BP2908
symbol: aroG-2
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: BP2909
symbol: BP2909
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many proteins displaying simlarity to the E. coli suppressor protein TldD e.g. Neisseria meningitidis protein TldD homolog or Nma0367 TR:Q9JWH8 (EMBL:AL162752) (480 aa) fasta scores: E(): 6.2e-116, 63.91% id in 485 aa. Also similar to the Escherichia coli TldD protein SW:TLDD_ECOLI (P46473) (481 aa) fasta scores: E(): 1.7e-106, 59% id in 483 aa.


ensembl_gene_id: BP2910
symbol: BP2910
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to many including: Neisseria meningitidis nitrilase Nmb0441 TR:Q9K0W5 (EMBL:AE002400) (270 aa) fasta scores: E(): 5.6e-52, 53.23% id in 263 aa and to Pseudomonas aeruginosa hypothetical protein Pa4475 TR:Q9HVU6 (EMBL:AE004861) (282 aa) fasta scores: E(): 5.1e-42, 46.86% id in 271 aa.


ensembl_gene_id: BP2911
symbol: bph3
gene_biotype: protein_coding
description:
  Putative DNA-binding protein (histone); Previously sequenced Bordetella pertussis Bph3 TR:O07507 (EMBL:U82566) (123 aa) fasta scores: E(): 5.2e-42, 100% id in 123 aa.


ensembl_gene_id: BP2913
symbol: BP2913
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several including: Agrobacterium tumefaciens Agr_c_3680p agr_c_3680 TR:AAK87785 (EMBL:AE008119) (262 aa) fasta scores: E(): 5.1e-25, 37.02% id in 262 aa and to Pseudomonas fluorescens transmembrane regulator PrtR TR:Q9KIN0 (EMBL:AF228766) (242 aa) fasta scores: E(): 1.7e-12, 31.25% id in 240 aa.


ensembl_gene_id: BP2914
symbol: BP2914
gene_biotype: protein_coding
description:
  Similar to many putative RNA polymerase sigma factors e.g. Bradyrhizobium japonicum EcfA TR:Q9EXR8 (EMBL:AJ304855) (172 aa) fasta scores: E(): 1.6e-20, 51.22% id in 164 aa; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: BP2915
symbol: BP2915
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to several including: Pseudomonas syringae pvmaculicola hypothetical protein TR:AAK49553 (EMBL:AF359557) (126 aa) fasta scores: E(): 2.7e-25, 58.62% id in 116 aa and to Rhizobium meliloti hypothetical signal peptide protein Smc01418 TR:CAC46680 (EMBL:AL591789) (124 aa) fasta scores: E(): 5.3e-19, 48.36% id in 122 aa.


ensembl_gene_id: BP2916
symbol: BP2916
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several including: Pseudomonas aeruginosa hypothetical protein Pa4395 TR:Q9HW11 (EMBL:AE004855) (159 aa) fasta scores: E(): 5.8e-27, 53.75% id in 160 aa and to Escherichia coli hypothetical protein YajQ or b0426 or z0529 or Ecs0480 SW:YAJQ_ECOLI (P77482) (169 aa) fasta scores: E(): 6e-24, 49.08% id in 163 aa; Belongs to the UPF0234 family.


ensembl_gene_id: BP2917
symbol: BP2917
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa1044 TR:Q9I4T0 (EMBL:AE004536) (154 aa) fasta scores: E(): 2e-14, 43.05% id in 144 aa.


ensembl_gene_id: BP2918
symbol: BP2918
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Bacillus halodurans Bh3119 protein TR:Q9K887 (EMBL:AP001517) (134 aa) fasta scores: E(): 2.8e-27, 50.39% id in 127 aa, and to Rhizobium meliloti hypothetical protein Smc01879 TR:Q92NM9 (EMBL:AL591789) (134 aa) fasta scores: E(): 5.2e-26, 53.54% id in 127 aa.


ensembl_gene_id: BP2919
symbol: BP2919
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Salmonella enterica subsp enterica serovar Typhi possible lipoprotein Sty3194 TR:CAD02868 (EMBL:AL627277) (250 aa) fasta scores: E(): 1.8e-19, 37.44% id in 243 aa and to Pseudomonas aeruginosa lipoprotein NlpD/LppB homolog precursor Pa3623 SW:NLPD_PSEAE (P45682) (297 aa) fasta scores: E(): 1.1e-18, 39.1% id in 289 aa.


ensembl_gene_id: BP2920
symbol: BP2920
gene_biotype: protein_coding
description:
  Putative chromate transport protein; Similar to Pseudomonas aeruginosa probable transporter Pa4289 TR:Q9HWB1 (EMBL:AE004845) (401 aa) fasta scores: E(): 4.4e-72, 59.55% id in 403 aa and to Bacillus halodurans chromate transporter ChrA or Bh0574 TR:Q9KFB1 (EMBL:AP001509) (397 aa) fasta scores: E(): 2e-59, 50.9% id in 387 aa.


ensembl_gene_id: BP2921
symbol: BP2921
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0435 TR:Q9I682 (EMBL:AE004480) (492 aa) fasta scores: E(): 1.8e-84, 51.11% id in 495 aa.


ensembl_gene_id: BP2922
symbol: bfrG
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; Similar to Pseudomonas aeruginosa hypothetical protein Pa0434 TR:Q9I683 (EMBL:AE004480) (730 aa) fasta scores: E(): 7.2e-136, 49.52% id in 737 aa, and to Escherichia coli ferrichrome-iron receptor precursor FhuA or TonA or b0150 SW:FHUA_ECOLI (P06971) (747 aa) fasta scores: E(): 3.7e-14, 22.9% id in 786 aa.


ensembl_gene_id: BP2924
symbol: BP2924
gene_biotype: protein_coding
description:
  Putative exported protein; Weakly similar to Burkholderia solanacearum probable signal peptide protein Rsp1034 TR:CAD18185 (EMBL:AL646082) (89 aa) fasta scores: E(): 2e-07, 49.33% id in 75 aa.


ensembl_gene_id: BP2925
symbol: BP2925
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein Smb20529 TR:CAC48908 (EMBL:AL603643) (309 aa) fasta scores: E(): 3.9e-53, 52.76% id in 271 aa and to Caulobacter crescentus hypothetical protein Cc3255 TR:Q9A3E9 (EMBL:AE005989) (280 aa) fasta scores: E(): 1.2e-44, 48.14% id in 270 aa; Belongs to the UPF0276 family.


ensembl_gene_id: BP2926
symbol: BP2926
gene_biotype: protein_coding
description:
  Weakly similar to Rhizobium meliloti hypothetical protein Smb20528 TR:CAC48907 (EMBL:AL603643) (266 aa) fasta scores: E(): 3.4e-19, 35.08% id in 248 aa and to Caulobacter crescentus hypothetical protein Cc3256 TR:Q9A3E8 (EMBL:AE005989) (254 aa) fasta scores: E(): 3.3e-14, 33.07% id in 254 aa.


ensembl_gene_id: BP2927
symbol: BP2927
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar in parts to Caulobacter crescentus hypothetical protein Cc3257 TR:Q9A3E7 (EMBL:AE005989) (150 aa) fasta scores: E(): 4.7e-15, 46.66% id in 135 aa and to Rhizobium meliloti hypothetical protein Smb20527 TR:CAC48906 (EMBL:AL603643) (144 aa) fasta scores: E(): 8.9e-12, 38.88% id in 144 aa.


ensembl_gene_id: BP2928
symbol: BP2928
gene_biotype: protein_coding
description:
  Similar to many putative membrane transport proteins including: Streptomyces avermitilis MFS transporter protein TR:BAB69375 (EMBL:AB070955) (465 aa) fasta scores: E(): 6e-81, 54.64% id in 463 aa and to Nocardia lactamdurans cephamycin export protein CmcT SW:CMCT_NOCLA (Q04733) (486 aa) fasta scores: E(): 7.3e-42, 38.28% id in 465 aa.


ensembl_gene_id: BP2929
symbol: BP2929
gene_biotype: protein_coding
description:
  Similar to several putative ArsR-family regulatory proteins including: Rhizobium meliloti regulator NitR TR:Q9AH16 (EMBL:AF323118) (123 aa) fasta scores: E(): 1.4e-10, 44.89% id in 98 aa and Rhizobium loti probable regulatory protein Mlr2511 TR:Q98I91 (EMBL:AP002999) (118 aa) fasta scores: E(): 2.7e-11, 45.09% id in 102 aa.


ensembl_gene_id: BP2930
symbol: cyoD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cytochrome O ubiquinol oxidase protein CyoD or b0429 or z0532 or Ecs0483 SW:CYOD_ECOLI (P18403) (109 aa) fasta scores: E(): 3.1e-15, 47.27% id in 110 aa and to Pseudomonas putida cytochrome O ubiquinol oxidase protein CyoD SW:CYOD_PSEPU (Q9WWR4) (110 aa) fasta scores: E(): 4.2e-15, 43.92% id in 107 aa.


ensembl_gene_id: BP2931
symbol: cyoC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cytochrome O ubiquinol oxidase subunit III CyoC or b0430 SW:CYOC_ECOLI (P18402) (204 aa) fasta scores: E(): 1.9e-47, 60.29% id in 204 aa and to Pseudomonas putida cytochrome O ubiquinol oxidase subunit III CyoC SW:CYOC_PSEPU (Q9WWR3) (207 aa) fasta scores: E(): 4.6e-49, 61.57% id in 203 aa.


ensembl_gene_id: BP2932
symbol: cyoB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cytochrome O ubiquinol oxidase polypeptide I CyoB or B0431 or Z0534 or Ecs0485 SW:CYOB_ECOLI (P18401) (663 aa) fasta scores: E(): 4.1e-193, 70.27% id in 656 aa and to Pseudomonas putida ubiquinol oxidase polypeptide I CyoB SW:CYOB_PSEPU (Q9WWR2) (672 aa) fasta scores: E(): 7.3e-181, 66.92% id in 659 aa; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: BP2933
symbol: cyoA
gene_biotype: protein_coding
description:
  Similar to Escherichia coli ubiquinol oxidase polypeptide II precursor CyoA or B0432 SW:CYOA_ECOLI (P18400) (315 aa) fasta scores: E(): 1.1e-59, 55.19% id in 279 aa and to Pseudomonas putida ubiquinol oxidase polypeptide II precursor CyoA SW:CYOA_PSEPU (Q9WWR1) (314 aa) fasta scores: E(): 2.5e-61, 54.15% id in 301 aa. Also similar to BP2731, 50.000% identity (52.107% ungapped) in 272 aa overlap.


ensembl_gene_id: BP2934
symbol: BP2934
gene_biotype: protein_coding
description:
  Similar to many two component system response regulators including: Xylella fastidiosa two-component system, regulatory protein Xf2578 TR:Q9PAE0 (EMBL:AE004064) (192 aa) fasta scores: E(): 6.1e-40, 66.66% id in 177 aa and to Rhodovulum sulfidophilum photosynthetic apparatus regulatory protein RegA SW:REGA_RHOSU (O82868) (183 aa) fasta scores: E(): 1e-20, 43.93% id in 173 aa.


ensembl_gene_id: BP2935
symbol: BP2935
gene_biotype: protein_coding
description:
  Similar to many two component system histidine kinases including: Xylella fastidiosa two-component system Xf2577 TR:Q9PAE1 (EMBL:AE004064) (405 aa) fasta scores: E(): 2.1e-72, 52.76% id in 398 aa and to Rhodobacter sphaeroides sensor histidine kinase RegB or PrrB SW:REGB_RHOSH (Q53068) (462 aa) fasta scores: E(): 1.6e-15, 29.06% id in 406 aa.


ensembl_gene_id: BP2937
symbol: BP2937
gene_biotype: protein_coding
description:
  Similar to Yersinia pestis conserved hypothetical protein Ypo2149 TR:CAC90958 (EMBL:AJ414151) (289 aa) fasta scores: E(): 7.6e-78, 67.24% id in 287 aa and to Salmonella typhimurium LT2 putative cytoplasmic protein Stm0951 TR:AAL19886 (EMBL:AE008740) (286 aa) fasta scores: E(): 1.7e-74, 65.15% id in 287 aa; Belongs to the pirin family.


ensembl_gene_id: BP2939
symbol: BP2939
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); Weakly similar to the N-terminus of several proteins including: Yersinia pestis hypothetical protein TR:Q9ZC77 (EMBL:AL031866) (190 aa) fasta scores: E(): 6.3e-19, 51.88% id in 133 aa and to Rhizobium meliloti hypothetical protein Smc00667 TR:CAC47284 (EMBL:AL591791) (197 aa) fasta scores: E(): 6.6e-14, 41.22% id in 114 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2940
symbol: BP2940
gene_biotype: protein_coding
description:
  Similar to many putative membrane transport proteins including: Rhizobium meliloti putative transmembrane transport protein Sma1937 TR:AAK65720 (EMBL:AE007292) (412 aa) fasta scores: E(): 5.7e-47, 43.87% id in 392 aa and to Pseudomonas aeruginosa probable MFS transporter Pa3718 TR:Q9HXS3 (EMBL:AE004791) (413 aa) fasta scores: E(): 1.6e-33, 36.95% id in 387 aa.


ensembl_gene_id: BP2941
symbol: BP2941
gene_biotype: protein_coding
description:
  Putative racemase; Similar to Streptomyces coelicolor putative racemase Sc5f2a.13 TR:Q9X7N6 (EMBL:AL049587) (398 aa) fasta scores: E(): 1e-70, 55.22% id in 364 aa, and to Mycobacterium tuberculosis CDC1551 fatty acid-coA racemase Mt1176 TR:AAK45435 (EMBL:AE006996) (395 aa) fasta scores: E(): 3.7e-69, 51.16% id in 387 aa; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP2942
symbol: BP2942
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1826 TR:Q9I2R9 (EMBL:AE004609) (301 aa) fasta scores: E(): 5.4e-29, 39% id in 300 aa and to Bacillus subtilis Als operon regulatory protein AlsR SW:ALSR_BACSU (Q04778) (302 aa) fasta scores: E(): 3.4e-25, 34% id in 250 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP2943
symbol: BP2943
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to several proteins of undefined function e.g. Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 8.5e-43, 42.02% id in 326 aa and to Rhizobium meliloti hypothetical protein Sma1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5e-40, 38.58% id in 324 aa.


ensembl_gene_id: BP2944
symbol: BP2944
gene_biotype: protein_coding
description:
  Weakly similar to Sulfolobus tokodaii hypothetical protein St0068 TR:BAB65025 (EMBL:AP000981) (165 aa) fasta scores: E(): 4.8e-09, 30.87% id in 149 aa and to Rhodococcus sp NCIMB 9784 FAD-binding protein CampD TR:AAK50623 (EMBL:AF323755) (167 aa) fasta scores: E(): 1.2e-07, 32.41% id in 145 aa.


ensembl_gene_id: BP2946
symbol: BP2946
gene_biotype: protein_coding
description:
  Hypothetical protein (pseudogene); HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal domain.


ensembl_gene_id: BP2948
symbol: BP2948
gene_biotype: protein_coding
description:
  Putative riboflavin-specific deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: BP2949
symbol: BP2949
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar in parts to several including: Agrobacterium tumefaciens TR:AAK86081 (EMBL:AE007965) (239 aa) fasta scores: E(): 1.6e-18, 50.82% id in 183 aa and to Pseudomonas aeruginosa hypothetical protein Pa1677TR:Q9I348 (EMBL:AE004595) (198 aa) fasta scores: E(): 1.9e-07, 30.47% id in 210 aa.


ensembl_gene_id: BP2951
symbol: nrdR
gene_biotype: protein_coding
description:
  Putative AraC-family transcriptional regulator (pseudogene); Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: BP2952
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: BP2953
symbol: BP2953
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Thauera aromatica ypothetical protein BbsI TR:Q9KJE6 (EMBL:AF173961) (209 aa) fasta scores: E(): 2.9e-49, 58.04% id in 205 aa and to Xylella fastidiosa hypothetical protein Xf2170 TR:Q9PBH4 (EMBL:AE004031) (204 aa) fasta scores: E(): 7.3e-40, 50.24% id in 205 aa.


ensembl_gene_id: BP2954
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: BP2956
symbol: BP2956
gene_biotype: protein_coding
description:
  Hypothetical protein; Weakly similar to several including: Pseudomonas aeruginosa hypothetical protein Pa0667 TR:Q9I5Q4 (EMBL:AE004501) (447 aa) fasta scores: E(): 5.2e-42, 39.83% id in 369 aa and to Neisseria meningitidis hypothetical protein Nmb0315 TR:Q9K163 (EMBL:AE002388) (430 aa) fasta scores: E(): 2.4e-35, 32.8% id in 445 aa.


ensembl_gene_id: BP2957
symbol: anmK
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: BP2959
symbol: BP2959
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Weakly similar in parts to Pseudomonas aeruginosa hypothetical protein Pa0663 TR:Q9I5Q8 (EMBL:AE004501) (239 aa) fasta scores: E(): 9.1e-06, 28.82% id in 222 aa.


ensembl_gene_id: BP2960
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: BP2961
symbol: rpsI
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 30s ribosomal protein S9 RpsI or b3230 or z4588 or Ecs4103 SW:RS9_ECOLI (P02363) (129 aa) fasta scores: E(): 3.5e-30, 65.35% id in 127 aa and to Neisseria meningitidis (serogroup A) 30s ribosomal protein S9 RpsI or Nma0379 or Nmb2056 TR:Q9JQZ9 (EMBL:AL162753) (130 aa) fasta scores: E(): 8.7e-38, 80.76% id in 130 aa; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: BP2962
symbol: rplM
gene_biotype: protein_coding
description:
  50s ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: BP2963
symbol: BP2963
gene_biotype: protein_coding
description:
  Putative exported solute binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: BP2964
symbol: BP2964
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several proteins of the PmbA/TldD family including: Pseudomonas aeruginosa PmbA protein TR:Q9HVU9 (EMBL:AE004861) (449 aa) fasta scores: E(): 1e-82, 52.86% id in 437 aa, and to Escherichia coli PmbA protein thought to be involved with secretion and maturation of microcin B17 (TldE or b4235 or z5845 or Ecs5212) SW:PMBA_ECOLI (P24231) (450 aa) fasta scores: E(): 2.7e-77, 49.66% id in 445 aa.


ensembl_gene_id: BP2965
symbol: BP2965
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Weakly similar to several proteins of undefined function including: Pasteurella multocida hypothetical protein Pm0119 TR:Q9CPC8 (EMBL:AE006047) (180 aa) fasta scores: E(): 1.8e-18, 44.02% id in 159 aa and to Vibrio cholerae hypothetical protein Vc2536 TR:Q9KP43 (EMBL:AE004323) (193 aa) fasta scores: E(): 5.7e-16, 41.11% id in 180 aa; Belongs to the UPF0307 family.


ensembl_gene_id: BP2966
symbol: BP2966
gene_biotype: protein_coding
description:
  Similar to many carboxylesterases including: Xylella fastidiosa Xf1624 TR:Q9PCY0 (EMBL:AE003989) (224 aa) fasta scores: E(): 1.5e-37, 49.53% id in 216 aa and to Pseudomonas fluorescens EstA SW:EST1_PSEFL (Q51758) (218 aa) fasta scores: E(): 2.9e-26, 41.31% id in 213 aa.


ensembl_gene_id: BP2970
symbol: BP2970
gene_biotype: protein_coding
description:
  Putative ABC transport proteins, inner membrane component; Similar to Clostridium acetobutylicum uncharacterised permease Cac0618 TR:Q97LE4 (EMBL:AE007577) (264 aa) fasta scores: E(): 3.7e-38, 40.99% id in 261 aa and to Pseudomonas aeruginosa probable permease of ABC transporter Pa3512 TR:Q9HY97 (EMBL:AE004771) (258 aa) fasta scores: E(): 1.9e-19, 32.5% id in 240 aa.


ensembl_gene_id: BP2971
symbol: BP2971
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to many proteins of undefined function including: Rhizobium loti Mlr4169 protein TR:Q98EN3 (EMBL:AP003003) (223 aa) fasta scores: E(): 5.1e-11, 32.74% id in 226 aa, and to Streptomyces coelicolor putative hydrolase Scd65.07C TR:Q9F2S5 (EMBL:AL392176) (224 aa) fasta scores: E(): 1.2e-07, 28.76% id in 226 aa.


ensembl_gene_id: BP2972
symbol: BP2972
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor conserved hypothetical protein Scf76.17 TR:Q9RJF7 (EMBL:AL121600) (130 aa) fasta scores: E(): 6.3e-27, 58.91% id in 129 aa, and to Bacillus subtilis YurT protein TR:O32161 (EMBL:Z99120) (127 aa) fasta scores: E(): 3.4e-25, 57.93% id in 126 aa.


ensembl_gene_id: BP2973
symbol: dbpA
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa RNA helicase DbpA or Pa0455 TR:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 1.8e-109, 63.83% id in 459 aa, and to Escherichia coli ATP-dependent RNA helicase thought to play a major role in ribosome assembly, DbpA or b1343 SW:DBPA_ECOLI (P21693) (457 aa) fasta scores: E(): 8.5e-85, 51.74% id in 458 aa; Belongs to the DEAD box helicase family.


ensembl_gene_id: BP2974
symbol: BP2974
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to several including: Bacillus halodurans Bh2161 protein TR:Q9KAX5 (EMBL:AP001514) (477aa) fasta scores: E(): 1.3e-38, 51.11% id in 493 aa, and to Bacillus subtilis hypothetical 48.8 kDa protein YhfA TR:O07599 (EMBL:Y14083) (463 aa) fasta scores: E(): 2e-17, 33.8% id in 497 aa. Also highly similar to BP0358, 65.339% identity in 502 aa overlap.


ensembl_gene_id: BP2975
symbol: BP2975
gene_biotype: protein_coding
description:
  Similar to several including: Streptomyces coelicolor putative GntR-family transcriptional regulator Scgd3.11C TR:Q9XA67 (EMBL:AL096822) (216 aa) fasta scores: E(): 3.1e-14, 36.09% id in 205 aa and to Acinetobacter calcoaceticus transcriptional repressor MdcY TR:Q9F0Q8 (EMBL:AF209728) (224 aa) fasta scores: E(): 1.7e-13, 35.35% id in 198 aa.


ensembl_gene_id: BP2977
symbol: BP2977
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Escherichia coli O157:H7 hypothetical 52.7 kDa protein Ecs3450 TR:BAB36873 (EMBL:AP002562) (484 aa) fasta scores: E(): 4.1e-28, 32% id in 475 aa.


ensembl_gene_id: BP2978
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: BP2979
symbol: BP2979
gene_biotype: protein_coding
description:
  Similar to many proposed transport proteins e.g. Clostridium acetobutylicum permease, MDR related, probably tetracycline resistance protein Cap0124 TR:Q97TH7 (EMBL:AE001438) (393 aa) fasta scores: E(): 3e-22, 26.89% id in 357 aa and to Pseudomonas aeruginosa probable MFS transporter Pa3303 TR:Q9HYU1 (EMBL:AE004752) (391 aa) fasta scores: E(): 1.8e-13, 28.53% id in 382 aa.


ensembl_gene_id: BP2981
symbol: BP2981
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa4508 TR:Q9HVR3 (EMBL:AE004864) (157 aa) fasta scores: E(): 7.9e-21, 44% id in 150 aa and to Caulobacter crescentus leucine-responsive regulatory protein Cc0805 TR:Q9AA06 (EMBL:AE005757) (155 aa) fasta scores: E(): 2.7e-19, 44% id in 150 aa.


ensembl_gene_id: BP2983
symbol: nrdA
gene_biotype: protein_coding
description:
  Putative pyruvate ferredoxin/flavodoxin oxidoreductase (pseudogene); Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: BP2984
symbol: nrdB
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: BP2985
symbol: bpH1
gene_biotype: protein_coding
description:
  Histone protein; Previously sequenced in Bordetella pertussis as histone H1 TR:Q45370 (EMBL:L37438) (182 aa) fasta scores: E(): 1.1e-39, 97.14% id in 175 aa.


ensembl_gene_id: BP2986
symbol: BP2986
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Similar to Escherichia coli hypothetical protein YggT or b2952 or z4297 or Ecs3828 SW:YGGT_ECOLI (P52058) (188 aa) fasta scores: E(): 3.3e-14, 35.75% id in 179 aa and to Vibrio cholerae hypothetical protein Vc0459 TR:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): 4.9e-14, 38.69% id in 168 aa.


ensembl_gene_id: BP2987
symbol: dltA
gene_biotype: protein_coding
description:
  Putative D-alanine-D-alanyl carrier protein ligase; Similar to Lactococcus lactis D-alanine activating enzyme DltA TR:Q9CG49 (EMBL:AE006358) (499 aa) fasta scores: E(): 6.8e-40, 32.8% id in 445 aa and to Bacillus subtilis D-alanine-activating enzyme DltA SW:DLTA_BACSU (P39581) (503 aa) fasta scores: E(): 1e-32, 36.99% id in 492 aa.


ensembl_gene_id: BP2988
symbol: dltB
gene_biotype: protein_coding
description:
  Putative protein involved in the transfer of D-alanine into teichoic acids; Similar to Bacillus subtilis protein DltB thought to be involved in D-alanine transport SW:DLTB_BACSU (P39580) (395 aa) fasta scores: E(): 5.5e-25, 33.68% id in 282 aa, and to Lactococcus lactis peptidoglycan biosynthesis protein DltB TR:Q9CG50 (EMBL:AE006358) (407 aa) fasta scores: E(): 1.8e-23, 34.69% id in 245 aa; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: BP2990
symbol: dltD
gene_biotype: protein_coding
description:
  Putative protein involved in the transfer of D-alanine into teichoic acids; Similar to Staphylococcus xylosus DltD dltD SWALL:Q9X2N7 (EMBL:AF032440) (382 aa) fasta scores: E(): 3.8e-07, 21.71% id in 327 aa, and to Streptococcus agalactiae secreted protein, DltD dltD SWALL:Q8VM64 (EMBL:AJ291784) (420 aa) fasta scores: E(): 0.00019, 22.72% id in 330 aa.


ensembl_gene_id: BP2991
symbol: BP2991
gene_biotype: protein_coding
description:
  Acyl carrier protein; Similar to in regions to: Escherichia coli O157:H7 EDL933 putative acyl carrier protein z4853 TR:AAG58588 (EMBL:AE005571) (85 aa) fasta scores: E(): 0.0049, 37.03% id in 81 aa and to Bacillus subtilis D-alanyl carrier protein DltC SW:DLTC_BACSU (P39579) (78 aa) fasta scores: E(): 0.14, 30.5% id in 59 aa.


ensembl_gene_id: BP2992
symbol: pcp
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to many Pectobacterium carotovorum subspcarotovorum. outer membrane lipoprotein Pcp TR:Q9RB08 (EMBL:AF168687) (155 aa) fasta scores: E(): 3.6e-13, 40.64% id in 155 aa and to Salmonella typhimurium outer membrane lipoprotein SlyB SW:SLYB_SALTY (Q53549) (155 aa) fasta scores: E(): 8.1e-14, 40.64% id in 155 aa. Note the extended N-terminal region of the Bordetella orthologue.


ensembl_gene_id: BP2993
symbol: BP2993
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative kinase Sc6g10.31C TR:Q9X816 (EMBL:AL049497) (338 aa) fasta scores: E(): 1.2e-28, 35.69% id in 311 aa and in the C-terminal region to Haemophilus influenzae ribokinase RbsK or Hi0505 SW:RBSK_HAEIN (P44331) (306 aa) fasta scores: E(): 0.0005, 24.34% id in 267 aa.


ensembl_gene_id: BP2994
symbol: BP2994
gene_biotype: protein_coding
description:
  Possible membrane protein; Weakly similar in parts to Pseudomonas aeruginosa hypothetical protein Pa4851 TR:Q9HUW2 (EMBL:AE004898) (421 aa) fasta scores: E(): 0.00026, 27.27% id in 418 aa.


ensembl_gene_id: BP2996
symbol: fabG-6
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase (Pseudogene); This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: BP2997
symbol: fabE
gene_biotype: protein_coding
description:
  Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: BP2998
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: BP2999
symbol: BP2999
gene_biotype: protein_coding
description:
  Thioredoxin; Similar in parts to many thioredoxins e.g. Xylella fastidiosa thioredoxin Xf1990 TR:Q9PBZ5 (EMBL:AE004018) (211 aa) fasta scores: E(): 3.6e-12, 35.46% id in 141 aa and to Bradyrhizobium japonicum thiol:disulfide interchange protein TlpA SW:TLPA_BRAJA (P43221) (221 aa) fasta scores: E(): 1.9e-09, 34.1% id in 173 aa.


ensembl_gene_id: BP3000
symbol: mpl
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.


ensembl_gene_id: BP3001
symbol: BP3001
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA4968 TR:Q9HUJ7 (EMBL:AE004909) (206 aa) fasta scores: E(): 2.5e-20, 42.56% id in 195 aa.


ensembl_gene_id: BP3002
symbol: BP3002
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein NMA2205 TR:Q9JSP1 (EMBL:AL162758) (635 aa) fasta scores: E(): 1.2e-70, 40.63% id in 598 aa, and to Neisseria meningitidis ribonuclease II-related protein NMB0282 TR:Q9K185 (EMBL:AE002385) (626 aa) fasta scores: E(): 9.7e-70, 40.13% id in 598 aa.


ensembl_gene_id: BP3003
symbol: BP3003
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA0406 TR:Q9I698 (EMBL:AE004477) (319 aa) fasta scores: E(): 7.2e-18, 31.63% id in 294 aa.


ensembl_gene_id: BP3004
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: BP3006
symbol: pagP
gene_biotype: protein_coding
description:
  Putative lipoprotein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.


ensembl_gene_id: BP3007
symbol: BP3007
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.


ensembl_gene_id: BP3008
symbol: grp
gene_biotype: protein_coding
description:
  Similar to Zymomonas mobilis glutamate uptake regulatory protein Grp SW:GRP_ZYMMO (P74996) (164 aa) fasta scores: E(): 1.1e-25, 51.67% id in 149 aa.


ensembl_gene_id: BP3009
symbol: BP3009
gene_biotype: protein_coding
description:
  Similar to Escherichia coli D-amino acid dehydrogenase small subunit DadA or DadR or B1189 or Z1952 or ECS1684 SW:DADA_ECOLI (P29011) (432 aa) fasta scores: E(): 1.2e-60, 41.62% id in 418 aa.


ensembl_gene_id: BP3010
symbol: BP3010
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative oxidoreductase protein SMC01157 TR:CAC41799 (EMBL:AL591783) (259 aa) fasta scores: E(): 3e-26, 39.01% id in 264 aa.


ensembl_gene_id: BP3011
symbol: BP3011
gene_biotype: protein_coding
description:
  Hypothetical protein; Weakly similar to Pseudomonas aeruginosa hypothetical protein PA2602 TR:Q9I0N5 (EMBL:AE004689) (201 aa) fasta scores: E(): 2.8e-08, 28.57% id in 133 aa. Also similar to BP2871, 45.562% identity (47.531% ungapped) in 169 aa overlap.


ensembl_gene_id: BP3012
symbol: BP3012
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti conserved hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.3e-40, 39.02% id in 328 aa.


ensembl_gene_id: BP3013
symbol: BP3013
gene_biotype: protein_coding
description:
  Hypothetical protein; Poor database matches. Weakly similar to the N-terminal regions of Agrobacterium tumefaciens hypothetical protein AGR_C_2627p TR:AAK87216 (EMBL:AE008068) (292 aa) fasta scores: E(): 0.0046, 28.75% id in 240 aa, and Rhizobium loti hypothetical protein MLR0372 TR:Q98MZ7 (EMBL:AP002994) (296 aa) fasta scores: E(): 0.018, 25.45% id in 220 aa.


ensembl_gene_id: BP3014
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase secA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: BP3015
symbol: BP3015
gene_biotype: protein_coding
description:
  Putative peptidase family M23/M37 protein; Similar to Shewanella violacea hypothetical protein YebA TR:Q9F1M5 (EMBL:AB052554) (299 aa) fasta scores: E(): 1.6e-20, 37.33% id in 233 aa, and to Xylella fastidiosa hypothetical protein XF0805 TR:Q9PF73 (EMBL:AE003920) (319 aa) fasta scores: E(): 5e-21, 36.13% id in 238 aa.


ensembl_gene_id: BP3016
symbol: BP3016
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Poor database matches. Similar to Neisseria meningitidis hypothetical protein NMA1734 TR:Q9JTK8 (EMBL:AL162757) (140 aa) fasta scores: E(): 0.01, 29% id in 131 aa.


ensembl_gene_id: BP3017
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: BP3018
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: BP3019
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: BP3020
symbol: ftsQ
gene_biotype: protein_coding
description:
  Putative cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.


ensembl_gene_id: BP3023
symbol: murG
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine--N-acetylmuramyl-; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: BP3024
symbol: ftsW
gene_biotype: protein_coding
description:
  Cell division protein FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.


ensembl_gene_id: BP3025
symbol: murD
gene_biotype: protein_coding
description:
  Putative peptidoglycan synthesis protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: BP3026
symbol: murX
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide-transfera se; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: BP3027
symbol: murE
gene_biotype: protein_coding
description:
  Possible murein precusor biosynthesis bifunctional protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: BP3028
symbol: ftsI
gene_biotype: protein_coding
description:
  Peptidoglycan synthetase precursor; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.


ensembl_gene_id: BP3029
symbol: ftsL
gene_biotype: protein_coding
description:
  Putative cell division protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: BP3030
symbol: mraW
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: BP3031
symbol: mraZ
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical protein YabB or B0081 SW:YABB_ECOLI (P22186) (152 aa) fasta scores: E(): 1e-19, 43.7% id in 135 aa, and to Neisseria meningitidis hypothetical protein NMA2075 TR:Q9JSY8 (EMBL:AL162758) (151 aa) fasta scores: E(): 3.2e-10, 32.87% id in 146 aa; Belongs to the MraZ family.


ensembl_gene_id: BP3034
symbol: BP3034
gene_biotype: protein_coding
description:
  Similar to Escherichia coli ABC transporter ATP-binding protein Uup or B0949 SW:UUP_ECOLI (P43672) (635 aa) fasta scores: E(): 9.7e-71, 46.03% id in 630 aa, and to Caulobacter crescentus holdfast attachment protein C HfaC or CC2631 SW:HFAC_CAUCR (Q45978) (608 aa) fasta scores: E(): 2.7e-62, 42.88% id in 611 aa.


ensembl_gene_id: BP3036
symbol: BP3036
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to Rhizobium meliloti putative hippurate hydrolase protein TR:CAC45132 (EMBL:AL591784) (389 aa) fasta scores: E(): 1.6e-72, 52.52% id in 377 aa.


ensembl_gene_id: BP3037
symbol: BP3037
gene_biotype: protein_coding
description:
  Similar to Chlamydia muridarum hypothetical protein TC0745 TR:Q9PJT3 (EMBL:AE002343) (86 aa) fasta scores: E(): 5.8e-15, 54.21% id in 83 aa.


ensembl_gene_id: BP3038
symbol: BP3038
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Caulobacter crescentus hypothetical protein CC0411 TR:Q9AB23 (EMBL:AE005714) (132 aa) fasta scores: E(): 0.00047, 32.77% id in 119 aa, and to the C-terminal region of Neisseria meningitidis putative DnaJ-family protein NMA1461 TR:Q9JU75 (EMBL:AL162756) (240 aa) fasta scores: E(): 5e-07, 33.61% id in 119 aa.


ensembl_gene_id: BP3039
symbol: lrp-3
gene_biotype: protein_coding
description:
  Similar to Escherichia coli, leucine-responsive regulatory protein Lrp or AlsB or LivR or Ihb or OppI or B0889 or Z1234 or ECD0974 SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E(): 3.6e-23, 44.23% id in 156 aa, and to Neisseria meningitidis putative AsnC-family transcriptional regulator NMA0756 TR:Q9JVP4 (EMBL:AL162754) (160 aa) fasta scores: E(): 4.1e-25, 46.15% id in 156 aa.


ensembl_gene_id: BP3040
symbol: bllY
gene_biotype: protein_coding
description:
  Putative hemolysin; Similar to Vibrio vulnificus hemolysin VllY SW:VLLY_VIBVU (O06695) (357 aa) fasta scores: E(): 9.6e-47, 56.78% id in 361 aa, and to Pseudomonas aeruginosa 4-hydroxyphenylpyruvate dioxygenase Hpd or PA0865 TR:Q9I576 (EMBL:AE004521) (357 aa) fasta scores: E(): 6.5e-54, 57.61% id in 361 aa.


ensembl_gene_id: BP3041
symbol: msrA
gene_biotype: protein_coding
description:
  Putative methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: BP3042
symbol: cyt
gene_biotype: protein_coding
description:
  Similar to Nitrosomonas europaea Cytochrome c-552 precursor Cyt SW:C552_NITEU (P95339) (103 aa) fasta scores: E(): 8.4e-16, 53.46% id in 101 aa.


ensembl_gene_id: BP3043
symbol: ilvD-2
gene_biotype: protein_coding
description:
  Similar to Lactococcus lactis dihydroxy-acid dehydratase IlvD SW:ILVD_LACLA (Q02139) (570 aa) fasta scores: E(): 5.1e-94, 47.13% id in 558 aa, and to Bacillus subtilis dihydroxy-acid dehydratase IlvD SW:ILVD_BACSU (P51785) (557 aa) fasta scores: E(): 7.9e-87, 43.08% id in 557 aa. Also similar to BP0289, 36.661% identity (40.653% ungapped) in 611 aa overlap; Belongs to the IlvD/Edd family.


ensembl_gene_id: BP3044
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: BP3047
symbol: BP3047
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: BP3048
symbol: BP3048
gene_biotype: protein_coding
description:
  Hypothetical protein; Low similarity to N-teminal region of Mycobacterium tuberculosis hypothetical protein RV2229c or MT2288 or MTCY427.10c SW:YM29_MYCTU (Q10513) (245 aa) fasta scores: E(): 0.32, 30.51% id in 154 aa.


ensembl_gene_id: BP3050
symbol: BP3050
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Agrobacterium tumefaciens AGR_C_182p TR:AAK85937 (EMBL:AE007953) (153 aa) fasta scores: E(): 2.8e-11, 35.33% id in 133 aa.


ensembl_gene_id: BP3051
symbol: BP3051
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Agrobacterium tumefaciens Agr_c_184p TR:AAK85938 (EMBL:AE007953) (501 aa) fasta scores: E(): 5.5e-122, 65.86% id in 501 aa, and to Rhizobium meliloti conserved hypothetical protein SMB20027 TR:CAC48430 (EMBL:AL603642) (501 aa) fasta scores: E(): 1.1e-121, 65.26% id in 501 aa. Also similar to BP3869, 42.886% identity (43.776% ungapped) in 492 aa overlap.


ensembl_gene_id: BP3052
symbol: BP3052
gene_biotype: protein_coding
description:
  Putative gamma-glutamyltranspeptidase; Similar to Mycobacterium tuberculosis CDC1551 gamma-glutamyltransferase MT0797 TR:AAK45039 (EMBL:AE006970) (512 aa) fasta scores: E(): 4.2e-112, 56.73% id in 520 aa, and to Pseudomonas sp acylase AcyI SW:PAC1_PSES3 (P15557) (557 aa) fasta scores: E(): 5.3e-37, 33.03% id in 557 aa.


ensembl_gene_id: BP3053
symbol: BP3053
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to Escherichia coli 2-hydroxy-3-oxopropionate reductase GlxR SW:GLXR_ECOLI (P77161) (292 aa) fasta scores: E(): 4.5e-25, 34.54% id in 275 aa, and to Rhizobium meliloti putative oxidoreductase protein SMC00133 TR:CAC46456 (EMBL:AL591788) (289 aa) fasta scores: E(): 2.1e-70, 69.56% id in 276 aa. CDS is truncated at the N-terminus in comparison to similar proteins. Similarity extends beyond the predicted translational start, however no start codons exsist.


ensembl_gene_id: BP3055
symbol: acpD-2
gene_biotype: protein_coding
description:
  C-terminal region of acyl carrier protein phosphodiesterase (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. This CDS is the C-terminal region of BP0497. Similar to the C-terminal region of Escherichia coli acyl carrier protein phosphodiesterase AcpD SW:ACPD_ECOLI (P41407) (200 aa) fasta scores: E(): 3.5e-18, 50.84% id in 118 aa. Putative N-terminal region of the pseudogene is BP0497.


ensembl_gene_id: BP3056
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: BP3057
symbol: BP3057
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative ATP-dependent RNA helicase RhlE SW:RHLE_ECOLI (P25888) (454 aa) fasta scores: E(): 9.2e-52, 43.36% id in 475 aa, and to Escherichia coli cold-shock DeaD-box protein A DeaD SW:DEAD_ECOLI (P23304) (628 aa) fasta scores: E(): 2.1e-47, 40.5% id in 511 aa. CDS contains an imperfect internal repeat (hexamer x15), residues 423 to 542. Similarity in the repeat region is poor.


ensembl_gene_id: BP3058
symbol: BP3058
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein NMA2076 TR:Q9JSY7 (EMBL:AL162758) (405 aa) fasta scores: E(): 2.8e-46, 40.49% id in 405 aa.


ensembl_gene_id: BP3059
symbol: cca
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 2 subfamily.


ensembl_gene_id: BP3060
symbol: BP3060
gene_biotype: protein_coding
description:
  Putative transglycosylase; Similar to Escherichia coli soluble lytic murein transglycosylase precursor Slt SW:SLT_ECOLI (645 aa) fasta scores: E(): 1.4e-22, 23.39% id in 607 aa, and to Neisseria meningitidis putative transglycosylase NMA0503 TR:Q9JW81 (EMBL:AL162753) (616 aa) fasta scores: E(): 9e-47, 36.42% id in 582 aa. Possible alternative translational start sites.


ensembl_gene_id: BP3061
symbol: BP3061
gene_biotype: protein_coding
description:
  5-formyltetrahydrofolate cyclo-ligase family protein; Similar to Rhizobium meliloti conserved hypothetical protein SMC02594 TR:CAC41462 (EMBL:AL591782) (222 aa) fasta scores: E(): 1.2e-14, 34.42% id in 183 aa, and to Escherichia coli hypothetical protein YgfA SW:YGFA_ECOLI () (182 aa) fasta scores: E(): 1.5e-07, 29.84% id in 191 aa; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: BP3062
symbol: BP3062
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative integral membrane transport protein 2SCG2.23 TR:Q9EX30 (EMBL:AL445963) (478 aa) fasta scores: E(): 3.6e-57, 42.82% id in 418 aa, and to Escherichia coli shikimate transporter ShiA SW:SHIA_ECOLI (438 aa) fasta scores: E(): 2.2e-52, 36.96% id in 422 aa.


ensembl_gene_id: BP3063
symbol: BP3063
gene_biotype: protein_coding
description:
  Putative aminohydrolase; Similar to Rhizobium loti acetylpolyamine aminohydrolase MLL0103 TR:Q98NK3 (EMBL:AP002994) (342 aa) fasta scores: E(): 3.3e-59, 44.67% id in 338 aa, and to Mycoplana ramosa acetylpolyamine aminohydrolase AphA SW:APHA_MYCRA (EMBL:D10463) (341 aa) fasta scores: E(): 2.5e-43, 36.65% id in 341 aa.


ensembl_gene_id: BP3064
symbol: BP3064
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative transcriptional regulator, LysR family protein, SMB21180 TR:CAC49246 (EMBL:AL603645) (317 aa) fasta scores: E(): 1.2e-32, 36.89% id in 290 aa, and to Chromatium vinosum rubisco operon transcriptional regulator RbcR SW:RBCR_CHRVI (EMBL:M64032) (302 aa) fasta scores: E(): 2.1e-12, 26.4% id in 284 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3066
symbol: BP3066
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa 5,10-methylenetetrahydrofolate reductase MetF or PA0430 TR:Q9I687 (EMBL:AE004480) (290 aa) fasta scores: E(): 3.4e-64, 60.93% id in 279 aa, and to Escherichia coli 5,10-methylenetetrahydrofolate reductase MetF SW:METF_ECOLI (EMBL:V01502) (296 aa) fasta scores: E(): 1.2e-36, 40.97% id in 266 aa.


ensembl_gene_id: BP3067
symbol: BP3067
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Synechocystis sp hypothetical protein SLR0284 TR:P74406 (EMBL:D90914) (116 aa) fasta scores: E(): 3.2e-13, 44.64% id in 112 aa, and to Streptomyces coelicolor hypothetical protein SCQ11.05c SW:YPT3_STRCO (EMBL:U37580) (125 aa) fasta scores: E(): 6.8e-09, 42.1% id in 114 aa.


ensembl_gene_id: BP3068
symbol: acyH
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: BP3069
symbol: BP3069
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus glycosyl transferase, group 1 family protein CC3345 TR:Q9A361 (EMBL:AE005996) (363 aa) fasta scores: E(): 2.1e-58, 47.8% id in 341 aa, and to Rhizobium loti probable glycosyl transferase MLR2668 TR:Q98HX4 (EMBL:AP003000) (340 aa) fasta scores: E(): 6.9e-56, 48.62% id in 327 aa.


ensembl_gene_id: BP3070
symbol: BP3070
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical protein YdhL SW:YDHL_ECOLI (P76188) (125 aa) fasta scores: E(): 0.039, 36.17% id in 94 aa. C-terminal region is similar to Pseudomonas aeruginosa hypothetical protein PA1788 TR:Q9I2V4 (EMBL:AE004604) (155 aa) fasta scores: E(): 6.1e-05, 51.11% id in 45 aa.


ensembl_gene_id: BP3071
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: BP3072
symbol: BP3072
gene_biotype: protein_coding
description:
  Putative acyltransferase; Similar to Xylella fastidiosa lipid A biosynthesis lauroyl acyltransferase XF1348 TR:Q9PDN1 (EMBL:AE003967) (316 aa) fasta scores: E(): 7.9e-20, 31.08% id in 296 aa, and to Escherichia coli lipid A biosynthesis lauroyl acyltransferase HtrB SW:HTRB_ECOLI (EMBL:X61000) (306 aa) fasta scores: E(): 2.3e-12, 25.96% id in 285 aa.


ensembl_gene_id: BP3073
symbol: BP3073
gene_biotype: protein_coding
description:
  Putative acyltransferase; Similar to Neisseria meningitidis HtrB/MsbB family protein NMB1418 TR:Q9JYV2 (EMBL:AE002491) (289 aa) fasta scores: E(): 1.2e-32, 35.14% id in 276 aa, and to Escherichia coli lipid A biosynthesis lauroyl acyltransferase HtrB SW:HTRB_ECOLI (EMBL:X61000) (306 aa) fasta scores: E(): 4.5e-28, 34.19% id in 272 aa.


ensembl_gene_id: BP3074
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: BP3075
symbol: BP3075
gene_biotype: protein_coding
description:
  Similar to Xylella fastidiosa hypothetical protein XF1482 TR:Q9PD97 (EMBL:AE003977) (226 aa) fasta scores: E(): 6.6e-13, 32.27% id in 220 aa.


ensembl_gene_id: BP3076
symbol: xerC
gene_biotype: protein_coding
description:
  Putative integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: BP3077
symbol: BP3077
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis putative outer-membrane receptor protein NMA1161 TR:Q9JUS2 (EMBL:AL162755) (764 aa) fasta scores: E(): 2e-34, 35.94% id in 740 aa.


ensembl_gene_id: BP3078
symbol: BP3078
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein SMC02986 TR:CAC47457 (EMBL:AL591792) (344 aa) fasta scores: E(): 2.4e-23, 44.54% id in 330 aa; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: BP3079
symbol: BP3079
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti conserved hypothetical protein SMC02985 TR:CAC47456 (EMBL:AL591792) (214 aa) fasta scores: E(): 2.1e-09, 27.91% id in 197 aa.


ensembl_gene_id: BP3080
symbol: BP3080
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti ABC transporter, periplasmic binding protein MLL8313 TR:Q983I7 (EMBL:AP003013) (313 aa) fasta scores: E(): 8.5e-44, 44.72% id in 313 aa, and to Neisseria meningitidis adhesin, putative NMB0586 TR:Q9K0K8 (EMBL:AE002414) (304 aa) fasta scores: E(): 2.5e-41, 42.12% id in 311 aa; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: BP3081
symbol: BP3081
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti ABC transporter, permease protein MLL8314 TR:Q983I6 (EMBL:AP003013) (291 aa) fasta scores: E(): 6.8e-52, 59.85% id in 269 aa, and to Neisseria meningitidis membrane protein NMB0587 TR:Q9K0K7 (EMBL:AE002415) (291 aa) fasta scores: E(): 5.7e-51, 55.05% id in 287 aa.


ensembl_gene_id: BP3082
symbol: BP3082
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti ABC transporter, ATP-binding protein MLL8315 TR:Q983I5 (EMBL:AP003013) (272 aa) fasta scores: E(): 3.5e-36, 51.73% id in 230 aa, and to Neisseria meningitidis ABC transporter, ATP-binding protein NMB0588 TR:Q9K0K6 (EMBL:AE002415) (251 aa) fasta scores: E(): 2.5e-29, 47.11% id in 225 aa.


ensembl_gene_id: BP3083
symbol: BP3083
gene_biotype: protein_coding
description:
  Putative regulatory protein; Similar to Pseudomonas aeruginosa transcriptional regulator NP20 or PA5499 TR:Q9HT74 (EMBL:AE004962) (167 aa) fasta scores: E(): 6.6e-17, 37.34% id in 158 aa, and to Escherichia coli zinc uptake regulation protein Zur SW:ZUR_ECOLI (EMBL:U00006) (171 aa) fasta scores: E(): 8.2e-16, 37.41% id in 155 aa; Belongs to the Fur family.


ensembl_gene_id: BP3084
symbol: BP3084
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus hypothetical protein CC0321 TR:Q9ABB0 (EMBL:AE005705) (365 aa) fasta scores: E(): 9.5e-60, 47.79% id in 362 aa.


ensembl_gene_id: BP3085
symbol: dksA
gene_biotype: protein_coding
description:
  Putative dnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: BP3086
symbol: hslV
gene_biotype: protein_coding
description:
  ATP-dependent protease heat shock protein; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: BP3087
symbol: hslU
gene_biotype: protein_coding
description:
  ATP-dependent Hsl protease ATP-binding subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: BP3088
symbol: BP3088
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Agrobacterium tumefaciens hypothetical protein Agr_l_1727p TR:AAK89437 (EMBL:AE008284) (94 aa) fasta scores: E(): 9.9e-08, 43.67% id in 87 aa.


ensembl_gene_id: BP3090
symbol: BP3090
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA4399 TR:Q9HW07 (EMBL:AE004855) (192 aa) fasta scores: E(): 1.4e-26, 48.95% id in 192 aa. Similar to BP0266, BP1766, BP2719, BP3683, and BP3731; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: BP3092
symbol: BP3092
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis phopholipase D-family protein NMA1646 TR:Q9JTT1 (EMBL:AL162756) (525 aa) fasta scores: E(): 5.7e-86, 49.51% id in 519 aa.


ensembl_gene_id: BP3093
symbol: modD
gene_biotype: protein_coding
description:
  Molybdenum transport ATP-binding protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.


ensembl_gene_id: BP3094
symbol: modC
gene_biotype: protein_coding
description:
  Molybdenum transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: BP3095
symbol: modB
gene_biotype: protein_coding
description:
  Similar to Azotobacter vinelandii molybdate-binding periplasmic protein precursor ModB SW:MODB_AZOVI (EMBL:X69077) (252 aa) fasta scores: E(): 7.4e-61, 69.7% id in 241 aa. Also similar to BP3105, 45.600% identity (45.783% ungapped) in 250 aa overlap.


ensembl_gene_id: BP3096
symbol: BP3096
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to Saccharomyces cerevisiae hypothetical protein SW:YN93_YEAST (EMBL:Z71679) (290 aa) fasta scores: E(): 1.3e-44, 44.16% id in 274 aa.


ensembl_gene_id: BP3097
symbol: BP3097
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor hypothetical protein SCE59.14c TR:Q9L1U0 (EMBL:AL138851) (196 aa) fasta scores: E(): 2.2e-09, 33.33% id in 195 aa.


ensembl_gene_id: BP3100
symbol: BP3100
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical/unknown transmembrane protein SMC00031 TR:CAC45518 (EMBL:AL591785) (159 aa) fasta scores: E(): 9.6e-08, 36.42% id in 140 aa.


ensembl_gene_id: BP3102
symbol: BP3102
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor (Pseudogene); CAT in pertussis; C(-)T deleted in parapertussis and bronciseptica.


ensembl_gene_id: BP3105
symbol: BP3105
gene_biotype: protein_coding
description:
  N-terminal region of a putative membrane protein (Pseudogene); 3 probable transmembrane helices predicted for BP3104 by TMHMM2.0 at aa 21-43, 58-80 and 87-106.


ensembl_gene_id: BP3106
symbol: BP3106
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.7e-51, 43.93% id in 330 aa.


ensembl_gene_id: BP3107
symbol: BP3107
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative gamma-glutamyltranspeptidase SC3C8.26 TR:O69935 (EMBL:AL023861) (603 aa) fasta scores: E(): 3.6e-36, 31.41% id in 573 aa, and to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt or B3447 SW:GGT_ECOLI () (580 aa) fasta scores: E(): 1.5e-21, 31.52% id in 533 aa.


ensembl_gene_id: BP3108
symbol: BP3108
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA1917 TR:Q9I2I7 (EMBL:AE004617) (115 aa) fasta scores: E(): 8.7e-17, 50% id in 114 aa, and to Pseudomonas aeruginosa hypothetical protein PA3425 TR:Q9HYI0 (EMBL:AE004763) (114 aa) fasta scores: E(): 6.4e-18, 55.76% id in 104 aa.


ensembl_gene_id: BP3109
symbol: BP3109
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA1918 TR:Q9I2I6 (EMBL:AE004617) (466 aa) fasta scores: E(): 1.4e-104, 59.09% id in 462 aa, and to Pseudomonas aeruginosa hypothetical protein PA3424 TR:Q9HYI1 (EMBL:AE004763) (468 aa) fasta scores: E(): 3.2e-29, 32.19% id in 469 aa.


ensembl_gene_id: BP3110
symbol: BP3110
gene_biotype: protein_coding
description:
  Probable MerR-family transcriptional regulator; Similar to Rhizobium meliloti hypothetical protein SMB21187 TR:CAC49253 (EMBL:AL603645) (276 aa) fasta scores: E(): 3.8e-34, 41.32% id in 271 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA4987 TR:Q9HUH8 (EMBL:AE004911) (199 aa) fasta scores: E(): 1.3e-10, 30.8% id in 198 aa.


ensembl_gene_id: BP3114
symbol: BP3114
gene_biotype: protein_coding
description:
  Putative DNA helicase (Pseudogene); TAA stop in pertussis. This CDS seems to be missing in parapertussis.


ensembl_gene_id: BP3115
symbol: BP3115
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Very low similarity to Sulfolobus tokodaii 382aa long hypothetical protein ST2010 TR:BAB67105 (EMBL:AP000988) (382 aa) fasta scores: E(): 0.0051, 20.61% id in 388 aa.


ensembl_gene_id: BP3116
symbol: BP3116
gene_biotype: protein_coding
description:
  Putative modification methylase; Similar in its N-terminal region to Thermoplasma volcanium modification methylase TVG1542167 TR:Q978C7 (EMBL:AP000996) (616 aa) fasta scores: E(): 1.4e-12, 25.46% id in 534 aa. From residue 646 to residue 839 presents low similarity to Vibrio cholera RtxA toxin TR:Q9X4W2 (EMBL:AF119150) blast scores: E(): 1.7, score: 35 20% id.


ensembl_gene_id: BP3117
symbol: BP3117
gene_biotype: protein_coding
description:
  Putative restriction endonuclease; Low similarity to Thermoplasma volcanium TVG1539639 protein TR:Q978C8 (EMBL:AP000996) (843 aa) fasta scores: E(): 0.0031, 22.79% id in 974 aa.


ensembl_gene_id: BP3118
symbol: BP3118
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli O157:H7 hypothetical 48.5 kDa protein ECS4465 TR:BAB37888 (EMBL:AP002566) (431 aa) fasta scores: E(): 7.4e-09, 27.41% id in 321 aa.


ensembl_gene_id: BP3120
symbol: BP3120
gene_biotype: protein_coding
description:
  Putative integrase; Similar to Escherichia coli prophage cp4-57 integrase IntA or SlpA or IntX or B2622 SW:INTA_ECOLI (P32053) (413 aa) fasta scores: E(): 4.4e-37, 31.93% id in 404 aa; Belongs to the 'phage' integrase family.


ensembl_gene_id: BP3121
symbol: ychF
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: BP3123
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: BP3124
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: BP3125
symbol: prsA
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: BP3126
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: BP3127
symbol: lolB
gene_biotype: protein_coding
description:
  Putative outer membrane lipoprotein; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.


ensembl_gene_id: BP3128
symbol: BP3128
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA4667 SW:YAG7_PSEAE (P42810) (590 aa) fasta scores: E(): 9.6e-24, 28.9% id in 609 aa, and to Neisseria meningitidis putative periplasmic protein NMA1090 TR:Q9JUX9 (EMBL:AL162755) (612 aa) fasta scores: E(): 1.4e-18, 24.55% id in 619 aa.


ensembl_gene_id: BP3129
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: BP3130
symbol: BP3130
gene_biotype: protein_coding
description:
  Putative cyclase; Similar to Aquifex aeolicus beta lactamase precursor CphA1 or AQ_1798 TR:O67667 (EMBL:AE000757) (326 aa) fasta scores: E(): 3.2e-20, 28.62% id in 297 aa.


ensembl_gene_id: BP3131
symbol: BP3131
gene_biotype: protein_coding
description:
  Putative oxygenase; Similar to Streptomyces argillaceus oxygenase MtmOII TR:O86481 (EMBL:AJ007932) (531 aa) fasta scores: E(): 4.6e-36, 33.57% id in 557 aa, and to Escherichia coli 3-(3-hydroxy-phenyl)propionate hydroxylase MhpA or B0347 SW:MHPA_ECOLI (P77397) (554 aa) fasta scores: E(): 6.3e-23, 27.63% id in 532 aa.


ensembl_gene_id: BP3132
symbol: BP3132
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum hypothetical protein rsp0701 rsp0701 or rs01748 SWALL:Q8XRY0 (EMBL:AL646080) (68 aa) fasta scores: E(): 2.6e-13, 69.84% id in 63 aa.


ensembl_gene_id: BP3133
symbol: BP3133
gene_biotype: protein_coding
description:
  Putative LysR-family transcriptional regulator; Similar to Pseudomonas putida transcriptional activator protein NahR SW:NAHR_PSEPU (P10183) (300 aa) fasta scores: E(): 5.1e-46, 43.81% id in 299 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3134
symbol: hmgA
gene_biotype: protein_coding
description:
  Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.


ensembl_gene_id: BP3135
symbol: fahA
gene_biotype: protein_coding
description:
  Fumarylacetoacetase; Similar to Emericella nidulans fumarylacetoacetase Fah or FahA TR:Q00770 (EMBL:L41670) (431 aa) fasta scores: E(): 5.9e-54, 41% id in 439 aa, and to Pseudomonas aeruginosa fumarylacetoacetase FahA or Pa2008 TR:Q9I2A2 (EMBL:AE004627) (432 aa) fasta scores: E(): 9.9e-93, 57.84% id in 427 aa.


ensembl_gene_id: BP3136
symbol: BP3136
gene_biotype: protein_coding
description:
  Putative sulfatase; Similar to Haemophilus influenzae hypothetical protein HI1246 SW:YC46_HAEIN (P44135) (647 aa) fasta scores: E(): 1.1e-113, 47.61% id in 628 aa.


ensembl_gene_id: BP3137
symbol: BP3137
gene_biotype: protein_coding
description:
  Putative two-component system sensor protein; Similar to Pseudomonas aeruginosa probable two-component sensor PA4380 TR:Q9HW22 (EMBL:AE004854) (426 aa) fasta scores: E(): 2.4e-23, 29.38% id in 439 aa.


ensembl_gene_id: BP3138
symbol: BP3138
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable two-component response regulator PA4381 TR:Q9HW21 (EMBL:AE004854) (227 aa) fasta scores: E(): 8.3e-34, 47.57% id in 227 aa.


ensembl_gene_id: BP3139
symbol: BP3139
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to Agrobacterium tumefaciens Agr_C_1314p TR:AAK86533 (EMBL:AE008006) (478 aa) fasta scores: E(): 3.2e-83, 49.46% id in 463 aa.


ensembl_gene_id: BP3140
symbol: BP3140
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to central region of Streptomyces coelicolor putative acetyl/propionyl CoA carboxylase, alpha subunit SCD10.13 TR:Q9K3W3 (EMBL:AL359988) (614 aa) fasta scores: E(): 0.033, 30.33% id in 178 aa.


ensembl_gene_id: BP3141
symbol: pgm-2
gene_biotype: protein_coding
description:
  Phosphoglucomutase; Identical to the Bordetella bronchiseptica phosphoglucomutase Pgm TR:Q9S3V9 (EMBL:AF171632) (392 aa) fasta scores: E(): 1.1e-149, 99.23% id in 392 aa, and similar to Pseudomonas aeruginosa phosphomannomutase AlgC or PA5322 SW:ALGC_PSEAE (P26276) (462 aa) fasta scores: E(): 3.9e-93, 53.26% id in 460 aa, and to Neisseria meningitidis phosphoglucomutase Pgm or NMB0790 SW:PGMU_NEIMB (P40391) (460 aa) fasta scores: E(): 1.2e-91, 54.54% id in 440 aa, and to Neisseria gonorrhoeae phosphoglucomutase PGM SW:PGMU_NEIGO (P40390) (460 aa) fasta scores: E(): 1.3e-90, 53.52% id i [...]


ensembl_gene_id: BP3142
symbol: pgi-2
gene_biotype: protein_coding
description:
  Similar to Homo sapiens glucose-6-phosphate isomerase Gpi TR:Q9BSK5 (EMBL:M61214) (558 aa) fasta scores: E(): 1.7e-68, 42.26% id in 504 aa, and to Escherichia coli glucose-6-phosphate isomerase Pgi or B4025 or Z5623 or Ecs5008 TR:AAG59224 (EMBL:X15196) (549 aa) fasta scores: E(): 3.5e-61, 37.69% id in 520 aa. Also similar to BP1971, 40.891% identity (43.238% ungapped) in 516 aa overlap.


ensembl_gene_id: BP3143
symbol: BP3143
gene_biotype: protein_coding
description:
  Putative glycosyltransferase; Similar to Pseudomonas aeruginosa WbpU TR:Q9RHD0 (EMBL:AF035937) (376 aa) fasta scores: E(): 1e-80, 62.06% id in 369 aa, and to Vibrio cholerae Orf139-23 protein TR:O87140 (EMBL:AB012956) (376 aa) fasta scores: E(): 7.4e-67, 53.63% id in 371 aa.


ensembl_gene_id: BP3144
symbol: BP3144
gene_biotype: protein_coding
description:
  Putative glycosyltransferase; Similar to Pseudomonas aeruginosa WbpT TR:Q9RHD1 (EMBL:AF035937) (383 aa) fasta scores: E(): 7.7e-49, 43.55% id in 388 aa.


ensembl_gene_id: BP3145
symbol: BP3145
gene_biotype: protein_coding
description:
  Putative glycosyltransferase; Similar to Yersinia enterocolitica WbcM protein WbcM TR:Q56916 (EMBL:Z47767) (358 aa) fasta scores: E(): 8e-13, 26.31% id in 361 aa, and to Rhizobium meliloti putative glycosyltransferase protein Smb21250 TR:CAC49154 (EMBL:AL603644) (427 aa) fasta scores: E(): 4.1e-22, 37.05% id in 367 aa. Also similar to BP3147, 41.509% identity (42.897% ungapped) in 371 aa overlap.


ensembl_gene_id: BP3146
symbol: BP3146
gene_biotype: protein_coding
description:
  Putative asparagine synthase; Similar to Pseudomonas aeruginosa WbpS TR:Q9RHD2 (EMBL:AF035937) (627 aa) fasta scores: E(): 1.5e-123, 53.29% id in 638 aa, and to Rhizobium loti asparagine synthase MLR6755 TR:Q988G2 (EMBL:AP003010) (665 aa) fasta scores: E(): 3.9e-68, 46.56% id in 655 aa.


ensembl_gene_id: BP3147
symbol: BP3147
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative glycosyltransferase protein SMB21250 TR:CAC49154 (EMBL:AL603644) (427 aa) fasta scores: E(): 9.2e-37, 37.46% id in 371 aa, and to Streptomyces coelicolor putative transferase SC1c3.12 TR:O69854 (EMBL:AL023702) (697 aa) fasta scores: E(): 4.8e-19, 28.97% id in 390 aa, and to Yersinia enterocolitica TrsD TR:Q56916 (EMBL:Z47767) (358 aa) fasta scores: E(): 3.8e-18, 28.13% id in 359 aa. Also similar to BP3145, 41.509% identity (42.897% ungapped) in 371 aa overlap.


ensembl_gene_id: BP3148
symbol: BP3148
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium loti virulence factor Mvin-like protein MLL5320 TR:Q98C28 (EMBL:AP003006) (526 aa) fasta scores: E(): 1.3e-13, 25.71% id in 420 aa, and to Streptomyces coelicolor putative integral membrane protein SCC61a.30 TR:Q9KYG3 (EMBL:AL356595) (523 aa) fasta scores: E(): 1.5e-11, 28.97% id in 421 aa.


ensembl_gene_id: BP3149
symbol: BP3149
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine C4 epimerase; Similar to Salmonella typhi vi polysaccharide biosynthesis protein VipB or TviC or Sty4660 SW:VIPB_SALTI (Q04973) (348 aa) fasta scores: E(): 2.8e-85, 63.17% id in 334 aa, and to Pseudomonas aeruginosa WbpP TR:Q9RHD6 (EMBL:AF035937) (341 aa) fasta scores: E(): 1e-96, 69.79% id in 341 aa.


ensembl_gene_id: BP3150
symbol: wbpO-2
gene_biotype: protein_coding
description:
  Similar to Salmonella typhi Vi polysaccharide biosynthesis protein VipA or TviB or Sty4661 SW:VIPA_SALTI (Q04972) (425 aa) fasta scores: E(): 1.1e-118, 68.72% id in 422 aa, and to Pseudomonas aeruginosa WbpO TR:Q9RHD7 (EMBL:AF035937) (422 aa) fasta scores: E(): 3.6e-132, 80.09% id in 422 aa. Almost identical to BP1629, 99.762% identity in 420 aa overlap; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: BP3151
symbol: BP3151
gene_biotype: protein_coding
description:
  Probable glycosyltransferase; Similar to Burkholderia pseudomallei undecaprenol phosphate N-acetylglucosaminyl transferase TR:O69131 (EMBL:AF064070) (368 aa) fasta scores: E(): 7.8e-51, 41.12% id in 355 aa, and to Pseudomonas aeruginosa glycosyltransferase wbpl wbpl or pa3145 TR:Q9HZ82 (EMBL:AE004738) (339 aa) fasta scores: E(): 3.5e-16, 29.05% id in 327 aa.


ensembl_gene_id: BP3152
symbol: coq7
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.


ensembl_gene_id: BP3153
symbol: BP3153
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PAa0653 TR:O05133 (EMBL:U89892) (140 aa) fasta scores: E(): 6.9e-25, 53.57% id in 140 aa.


ensembl_gene_id: BP3154
symbol: thyA
gene_biotype: protein_coding
description:
  Putative thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: BP3155
symbol: folA
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: BP3156
symbol: BP3156
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative transcriptional regulator protein SMBb20039 TR:CAC48442 (EMBL:AL603642) (474 aa) fasta scores: E(): 2.6e-54, 39.15% id in 475 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA5283 TR:Q9HTS1 (EMBL:AE004941) (458 aa) fasta scores: E(): 3.4e-52, 37.77% id in 458 aa.


ensembl_gene_id: BP3157
symbol: BP3157
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida omega-amino acid--pyruvate aminotransferase SW:OAPT_PSEPU (P28269) (449 aa) fasta scores: E(): 3.2e-75, 47.38% id in 439 aa, and to Rhizobium loti beta-alanine-pyruvate transaminase Mll1632 TR:Q98K53 (EMBL:AP002997) (442 aa) fasta scores: E(): 1.2e-108, 63.67% id in 435 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: BP3159
symbol: mmsA
gene_biotype: protein_coding
description:
  Putative methylmalonate-semialdehyde dehydrogenase [acylating] (Pseudogene); ScanRegExp hit to PS00070, Aldehyde dehydrogenases cysteine active site.


ensembl_gene_id: BP3160
symbol: BP3160
gene_biotype: protein_coding
description:
  Similar to Rhizobium sp probable peptide ABC transporter permease protein Y4tP SW:Y4TP_RHISN (Q53191) (313 aa) fasta scores: E(): 4e-60, 52.07% id in 313 aa.


ensembl_gene_id: BP3161
symbol: BP3161
gene_biotype: protein_coding
description:
  Similar to Rhizobium sp probable peptide ABC transporter permease protein Y4tQ SW:Y4TQ_RHISN (Q53192) (291 aa) fasta scores: E(): 3.3e-44, 49.47% id in 283 aa, and to Bacillus firmus dipeptide transport system permease protein DppC SW:DPPC_BACFI (P94312) (304 aa) fasta scores: E(): 6.6e-33, 38.02% id in 284 aa.


ensembl_gene_id: BP3163
symbol: BP3163
gene_biotype: protein_coding
description:
  Putative ABC transpoter ATP-binding protein (pseudogene); Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.


ensembl_gene_id: BP3166
symbol: ureG
gene_biotype: protein_coding
description:
  N-terminal region of a putative aldehyde dehydrogenase (Pseudogene); Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: BP3167A
symbol: ureE
gene_biotype: protein_coding
description:
  Urease accessory protein (Pseudogene); Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.


ensembl_gene_id: BP3168
symbol: ureC
gene_biotype: protein_coding
description:
  Urease alpha subunit; Similar to Bordetella bronchiseptica urease alpha subunit UreC SW:URE1_BORBR (O08400) (571 aa) fasta scores: E(): 3.9e-217, 99.82% id in 571 aa; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.


ensembl_gene_id: BP3169
symbol: ureB
gene_biotype: protein_coding
description:
  Urease beta subunit; Similar to Bordetella bronchiseptica urease beta subunit UreB SW:URE2_BORBR (O06707) (102 aa) fasta scores: E(): 4.1e-39, 99.02% id in 102 aa.


ensembl_gene_id: BP3170
symbol: ureJ
gene_biotype: protein_coding
description:
  Urease accessory protein; Similar to Bordetella bronchiseptica urease accessory protein UreJ TR:O06706 (EMBL:AF000579) (202 aa) fasta scores: E(): 7.6e-73, 99.5% id in 202 aa, and to Rhizobium leguminosarum HupE protein precursor SW:HUPE_RHILV (P27650) (191 aa) fasta scores: E(): 6.2e-18, 38.69% id in 199 aa.


ensembl_gene_id: BP3171
symbol: ureA
gene_biotype: protein_coding
description:
  Urease gamma subunit; Similar to Bordetella bronchiseptica urease gamma subunit UreA SW:URE3_BORBR (O06705) (100 aa) fasta scores: E(): 2e-34, 99% id in 100 aa, and to Escherichia coli urease gamma subunit UreA SW:URE3_ECOLI (Q03282) (100 aa) fasta scores: E(): 8.9e-27, 75% id in 100 aa.


ensembl_gene_id: BP3172
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: BP3173
symbol: hmrR
gene_biotype: protein_coding
description:
  Similar to the N-terminal region of Rhizobium meliloti heavy metal dependent transcription regulator HmrR SW:HMRR_RHIME (Q9X5X4) (147 aa) fasta scores: E(): 2e-15, 61.9% id in 84 aa, and to Escherichia coli transcriptional regulator CueR or B0487 SW:CUER_ECOLI (P77565) (135 aa) fasta scores: E(): 9.5e-08, 37.5% id in 88 aa. Also similar to BP1726, 58.333% identity in 84 aa overlap.


ensembl_gene_id: BP3176
symbol: BP3176
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator PA2299 TR:Q9I1H6 (EMBL:AE004655) (249 aa) fasta scores: E(): 1.6e-16, 33.04% id in 227 aa.


ensembl_gene_id: BP3177
symbol: BP3177
gene_biotype: protein_coding
description:
  Similar to Clostridium tetanomorphum methylaspartate ammonia-lyase SW:MAAL_CLOTT (Q05514) (413 aa) fasta scores: E(): 2.1e-44, 36.67% id in 409 aa. Also similar to BP0806, 40.500% identity (40.704% ungapped) in 400 aa overlap.


ensembl_gene_id: BP3178
symbol: BP3178
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.7e-53, 49.07% id in 324 aa.


ensembl_gene_id: BP3179
symbol: BP3179
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Agrobacterium tumefaciens AGR_l_2924p TR:AAK90029 (EMBL:AE008346) (448 aa) fasta scores: E(): 2.3e-29, 34.33% id in 434 aa.


ensembl_gene_id: BP3180
symbol: BP3180
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Streptomyces coelicolor putative nitrate/nitrite transporter protein SCJ12.25c TR:Q9RI35 (EMBL:AL109989) (412 aa) fasta scores: E(): 2.4e-06, 27.6% id in 413 aa.


ensembl_gene_id: BP3181
symbol: BP3181
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA0586 TR:Q9I5V1 (EMBL:AE004494) (517 aa) fasta scores: E(): 2.6e-137, 66.06% id in 498 aa, and to Escherichia coli hypothetical protein YcgB or B1188 SW:YCGB_ECOLI (P29013) (510 aa) fasta scores: E(): 1.1e-127, 60.32% id in 494 aa.


ensembl_gene_id: BP3182
symbol: BP3182
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae hypothetical protein VC1873 TR:Q9KQX4 (EMBL:AE004263) (423 aa) fasta scores: E(): 1e-79, 48.82% id in 426 aa, and to Escherichia coli hypothetical protein YeaH or B1784 SW:YEAH_ECOLI (P76235) (427 aa) fasta scores: E(): 2.8e-79, 49.52% id in 424 aa; Belongs to the UPF0229 family.


ensembl_gene_id: BP3185
symbol: BP3185
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); ScanRegExp hit to PS00017, ATP/GTP-binding site motif A (P-loop).


ensembl_gene_id: BP3189
symbol: BP3189
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phenylacetate-coenzyme A ligase PaaK or B1398 SW:PAAK_ECOLI (P76085) (437 aa) fasta scores: E(): 2.2e-40, 34.97% id in 446 aa, and to Archaeoglobus fulgidus coenzyme F390 synthetase Af2013 TR:O28266 (EMBL:AE000964) (440 aa) fasta scores: E(): 2.3e-53, 38.51% id in 444 aa.


ensembl_gene_id: BP3190
symbol: BP3190
gene_biotype: protein_coding
description:
  Similar to Deinococcus radiodurans transcriptional regulator, TetR family Dr2376 TR:Q9RRV9 (EMBL:AE002068) (197 aa) fasta scores: E(): 3.9e-08, 27.97% id in 193 aa.


ensembl_gene_id: BP3191
symbol: BP3191
gene_biotype: protein_coding
description:
  Putative acyl-CoA dehyrdogenase; Similar to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase PA2552 TR:Q9I0T2 (EMBL:AE004683) (375 aa) fasta scores: E(): 7.5e-50, 40.22% id in 363 aa, and to Bacillus subtilis acyl-CoA dehydrogenase AcdA or Acd SW:ACDA_BACSU (P45867) (379 aa) fasta scores: E(): 1.1e-46, 39.88% id in 361 aa.


ensembl_gene_id: BP3192
symbol: BP3192
gene_biotype: protein_coding
description:
  Putative ABC transporter permease protein; Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, permease protein DR0282 TR:Q9RXM8 (EMBL:AE001889) (334 aa) fasta scores: E(): 6.5e-21, 31.46% id in 321 aa; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: BP3193
symbol: BP3193
gene_biotype: protein_coding
description:
  Putative ABC transpoter permease protein; Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, permease protein DR0281 TR:Q9RXM9 (EMBL:AE001889) (285 aa) fasta scores: E(): 2.4e-25, 31.57% id in 285 aa; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: BP3194
symbol: BP3194
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, ATP-binding protein DRA0260 TR:Q9RYP9 (EMBL:AE001863) (238 aa) fasta scores: E(): 2e-30, 50% id in 240 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG or PA1070 SW:BRAG_PSEAE (P21630) (233 aa) fasta scores: E(): 9.8e-27, 42.19% id in 237 aa.


ensembl_gene_id: BP3195
symbol: BP3195
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG or B3455 or Z4825 or ECS4302 SW:LIVG_ECOLI (P22730) (255 aa) fasta scores: E(): 6.6e-23, 36.86% id in 255 aa.


ensembl_gene_id: BP3196
symbol: BP3196
gene_biotype: protein_coding
description:
  Similar to Escherichia coli Leu/Ile/Val-binding protein precursor LivJ or B3460 SW:LIVJ_ECOLI (P02917) (367 aa) fasta scores: E(): 3.6e-14, 27.74% id in 364 aa.


ensembl_gene_id: BP3198
symbol: BP3198
gene_biotype: protein_coding
description:
  ScanRegExp hit to PS00061, Short-chain dehydrogenases/reductases family signature; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: BP3199
symbol: BP3199
gene_biotype: protein_coding
description:
  Similar to Sulfolobus solfataricus hypothetical protein SSO2626 TR:Q97VJ8 (EMBL:AE006858) (128 aa) fasta scores: E(): 3.4e-05, 28.15% id in 103 aa.


ensembl_gene_id: BP3202
symbol: BP3202
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Arabidopsis thaliana hypothetical 44.2 kDa protein T22A6.50 or At4G24220 TR:Q9STX2 (EMBL:AL078637) (388 aa) fasta scores: E(): 3.8e-17, 29.75% id in 373 aa.


ensembl_gene_id: BP3207
symbol: BP3207
gene_biotype: protein_coding
description:
  Putative desaturase (pseudogene); In-frame TAG stop codon in pertussis; TGG in parapertussis and bronchiseptica.


ensembl_gene_id: BP3212
symbol: BP3212
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA1814 TR:Q9I2T0 (EMBL:AE004608) (253 aa) fasta scores: E(): 1.3e-18, 31.47% id in 251 aa.


ensembl_gene_id: BP3213
symbol: gloB
gene_biotype: protein_coding
description:
  Probable hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: BP3214
symbol: BP3214
gene_biotype: protein_coding
description:
  Similar to Escherichia coli membrane-bound lytic murein transglycosylase D precursor MltD or DniR or B0211 SW:MLTD_ECOLI (P23931) (452 aa) fasta scores: E(): 2.4e-29, 32.05% id in 443 aa, and to Pseudomonas aeruginosa membrane-bound lytic murein transglycosylase d precursor MltD or Pa1812 TR:Q9I2T2 (EMBL:AE004607) (534 aa) fasta scores: E(): 1.1e-47, 38.84% id in 484 aa; putative membrane-bound precursor protein.


ensembl_gene_id: BP3215
symbol: fabI-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli enoyl-[acyl-carrier-protein] reductase [NADH] FabI or EnvM or B1288 or Z2512 or ECS1861 SW:FABI_ECOLI (P29132) (261 aa) fasta scores: E(): 1.1e-60, 65.21% id in 253 aa.


ensembl_gene_id: BP3217
symbol: BP3217
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA1203 TR:Q9I4D5 (EMBL:AE004550) (135 aa) fasta scores: E(): 3.9e-09, 33.58% id in 134 aa.


ensembl_gene_id: BP3218
symbol: BP3218
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA3712 TR:Q9HXS9 (EMBL:AE004790) (231 aa) fasta scores: E(): 1.7e-39, 58.4% id in 226 aa.


ensembl_gene_id: BP3219
symbol: BP3219
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 8.5e-42, 41.61% id in 310 aa.


ensembl_gene_id: BP3222
symbol: ompR
gene_biotype: protein_coding
description:
  Hypothetical protein (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. No significant database matches.


ensembl_gene_id: BP3223
symbol: BP3223
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa two-component sensor EnvZ or PA5199 TR:Q9HTZ0 (EMBL:AE004932) (439 aa) fasta scores: E(): 5.9e-24, 31.87% id in 480 aa, and to Bordetella pertussis, Bordetella bronchiseptica, Bordetella avium, and Bordetella parapertussis RisS protein TR:O88100 (EMBL:AJ224799) (474 aa) fasta scores: E(): 4.6e-22, 34.2% id in 307 aa.


ensembl_gene_id: BP3224
symbol: BP3224
gene_biotype: protein_coding
description:
  Putative cytochrome oxidase; Similar to Escherichia coli cytochrome D ubiquinol oxidase subunit II CydB SW:CYDB_ECOLI (P11027) (379 aa) fasta scores: E(): 0.022, 21.97% id in 364 aa, and to Rhizobium loti quinol oxidase, subunit II MLR4525 TR:Q98DW0 (EMBL:AP003004) (334 aa) fasta scores: E(): 1.9e-39, 35.78% id in 327 aa.


ensembl_gene_id: BP3225
symbol: BP3225
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum putative transmembrane cytochrome BD-II oxidase Rsp1242 TR:CAD18393 (EMBL:AL646083) (462 aa) fasta scores: E(): 1.7e-56, 41.14% id in 435 aa, and to Rhizobium loti quinol oxidase subunit I mlr4524 TR:Q98DW1 (EMBL:AP003004) (453 aa) fasta scores: E(): 7.3e-52, 38.03% id in 447 aa.


ensembl_gene_id: BP3226
symbol: glnS
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutaminyl-tRNA synthetase GlnS SW:SYQ_ECOLI (P00962) (553 aa) fasta scores: E(): 9.5e-116, 53.64% id in 535 aa, and to Neisseria meningitidis glutaminyl-tRNA synthetase NMA1748 SW:SYQ_NEIMA (P57000) (562 aa) fasta scores: E(): 9.9e-119, 51.37% id in 584 aa.


ensembl_gene_id: BP3227
symbol: minC
gene_biotype: protein_coding
description:
  Putative cell division inhibitor; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: BP3228
symbol: minD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli septum site-determining protein MinD SW:MIND_ECOLI (P18197) (269 aa) fasta scores: E(): 4.8e-70, 73.13% id in 268 aa, and to Vibrio cholerae septum site-determining protein mind VC1960 TR:Q9KQN8 (EMBL:AE004271) (276 aa) fasta scores: E(): 1.4e-70, 70.9% id in 275 aa.


ensembl_gene_id: BP3229
symbol: minE
gene_biotype: protein_coding
description:
  Putative cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.


ensembl_gene_id: BP3230
symbol: BP3230
gene_biotype: protein_coding
description:
  Transposase for IS1663; Similar to Neisseria meningitidis putative invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) (318 aa) fasta scores: E(): 5.2e-17, 28.165% id in 316 aa and Acinetobacter spSE19. pilin inverting protein ChnY TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): 1.9e-49, 47.205% id in 322 aa.


ensembl_gene_id: BP3231
symbol: osmB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli osmotically inducible lipoprotein B precursor OsmB or B1283 or Z2523 or Ecs1856 SW:OSMB_ECOLI (P17873) (72 aa) fasta scores: E(): 6.7e-08, 51.47% id in 68 aa.


ensembl_gene_id: BP3234
symbol: BP3234
gene_biotype: protein_coding
description:
  Putative ABC transport ATP-binding subunit (pseudogene); ScanRegExp hit to PS00017, ATP/GTP-binding site motif A (P-loop).


ensembl_gene_id: BP3237
symbol: BP3237
gene_biotype: protein_coding
description:
  Putative binding-protein-dependent permease (pseudogene); HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: BP3238
symbol: BP3238
gene_biotype: protein_coding
description:
  Putative glycosyl transferase; Similar to proteins involved in polysaccharide biosynthesis eg. Yersinia enterocolitica WbcL protein TR:Q56915 (EMBL:Z47767) (292 aa) fasta scores: E(): 5.7e-18, 28.51% id in 270 aa, and to Streptococcus agalactiae CpsvN TR:Q9AFH5 (EMBL:AF349539) (295 aa) fasta scores: E(): 1.2e-10, 28.5% id in 228 aa.


ensembl_gene_id: BP3239
symbol: BP3239
gene_biotype: protein_coding
description:
  Similar to many eg. Pseudomonas aeruginosa transcriptional regulator PtxR or pa2258 SW:PTXR_PSEAE (P72131) (312 aa) fasta scores: E(): 1.1e-21, 30.69% id in 316 aa. Also similar to BP0265, 49.329% identity (50.690% ungapped) in 298 aa overlap; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3239A
symbol: BP3239A
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Neisseria meningitidis; putative periplasmic protein Nma2065 SWALL:Q9JSZ4 (EMBL:AL162758)(90 aa) fasta scores: E()3.9 45.65% id in 46 aa overlap.


ensembl_gene_id: BP3240
symbol: uvrA2
gene_biotype: protein_coding
description:
  Putative excinuclease ABC subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: BP3241
symbol: BP3241
gene_biotype: protein_coding
description:
  Putative chorismate-binding enzyme; Similar to Rhizobium loti Mlr3005 protein TR:Q98H70 (EMBL:AP003000) (381 aa) fasta scores: E(): 6.7e-44, 43.62% id in 353 aa, and to Klebsiella aerogenes para-aminobenzoate synthase component I PabB SW:PABB_KLEAE (P12679) (451 aa) fasta scores: E(): 1.6e-35, 45.03% id in 302 aa, and to Streptomyces griseus para-aminobenzoate synthase Pab SW:PABS_STRGR (P32483) (723 aa) fasta scores: E(): 4.5e-34, 40.49% id in 326 aa.


ensembl_gene_id: BP3242
symbol: BP3242
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhizobium loti Mlr3007 protein TR:Q98H69 (EMBL:AP003000) (220 aa) fasta scores: E(): 4.6e-18, 36.71% id in 207 aa, and to Rhizobium meliloti hypothetical protein Smc04014 TR:CAC47377 (EMBL:AL591791) (208 aa) fasta scores: E(): 4.7e-17, 40.77% id in 206 aa.


ensembl_gene_id: BP3244
symbol: BP3244
gene_biotype: protein_coding
description:
  Similar to Streptomyces galilaeus putative aklaviketone reductase AknU TR:Q9L4U4 (EMBL:AF264025) (267 aa) fasta scores: E(): 7.4e-22, 40.16% id in 244 aa, and to Streptomyces peucetius daunorubicin-doxorubicin polyketide synthase DnrH TR:Q54810 (EMBL:L35560) (251 aa) fasta scores: E(): 1.7e-19, 40.89% id in 247 aa.


ensembl_gene_id: BP3245
symbol: BP3245
gene_biotype: protein_coding
description:
  Putative conserved membrane protein; Similar to Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 9.7e-39, 40.37% id in 317 aa, and to Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster protein TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 1.6e-35, 35.84% id in 332 aa.


ensembl_gene_id: BP3246
symbol: BP3246
gene_biotype: protein_coding
description:
  Putative fatty acid CoA ligase; Similar to enzymes involved in secondary metabolite biosynthesis eg. Streptomyces coelicolor putative long-chain-fatty-acid-CoA ligase SC2G5.17 TR:Q9Z5A6 (EMBL:AL035478) (541 aa) fasta scores: E(): 8.5e-29, 30.46% id in 512 aa, and to Streptomyces pristinaespiralis pristinamycin I synthetase I SnbA TR:P95819 (EMBL:X98515) (582 aa) fasta scores: E(): 5.8e-25, 30.76% id in 533 aa.


ensembl_gene_id: BP3247
symbol: BP3247
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Klebsiella aerogenes histidine utilization repressor HutC SW:HUTC_KLEAE (P12380) (241 aa) fasta scores: E(): 5.8e-09, 25.64% id in 234 aa.


ensembl_gene_id: BP3248
symbol: BP3248
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical protein YgdL or b2812 SW:YGDL_ECOLI (Q46927) (268 aa) fasta scores: E(): 8.8e-33, 42.85% id in 273 aa, and to Neisseria meningitidis hypothetical protein NMA1704 TR:Q9JTN0 (EMBL:AL162756) (258 aa) fasta scores: E(): 1.7e-32, 45.31% id in 267 aa.


ensembl_gene_id: BP3249
symbol: BP3249
gene_biotype: protein_coding
description:
  Putative inner membrane efflux protein; Similar to Streptomyces coelicolor putative integral membrane transport protein SCI30A.30C TR:Q9S243 (EMBL:AL096811) (463 aa) fasta scores: E(): 6.1e-19, 30.78% id in 393 aa, and to Streptoverticillium netropsis SpcT TR:Q9S1M2 (EMBL:U70376) (433 aa) fasta scores: E(): 6.8e-08, 27.29% id in 392 aa.


ensembl_gene_id: BP3251
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: BP3252
symbol: BP3252
gene_biotype: protein_coding
description:
  Putative monooxygenase component; Similar to Chelatobacter heintzii nitrilotriacetate monooxygenase component B NtaB or NmoB SW:NTAB_CHEHE (P54990) (322 aa) fasta scores: E(): 8.1e-20, 38.78% id in 165 aa.


ensembl_gene_id: BP3253
symbol: BP3253
gene_biotype: protein_coding
description:
  Putative conserved exported protein; Similar to Agrobacterium tumefaciens StrC58 Agr_c_4955p TR:AAK88449 (EMBL:AE008187) (367 aa) fasta scores: E(): 9.3e-78, 59.51% id in 368 aa, and to Caulobacter crescentus hypothetical protein Cc3174 TR:Q9A3M8 (EMBL:AE005981) (372 aa) fasta scores: E(): 4.1e-67, 51.64% id in 364 aa.


ensembl_gene_id: BP3255
symbol: BP3255
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa3594 TR:Q9HY32 (EMBL:AE004780) (295 aa) fasta scores: E(): 6.6e-45, 47.26% id in 292 aa, and to Bacillus subtilis als operon regulatory protein AlsR SW:ALSR_BACSU (Q04778) (302 aa) fasta scores: E(): 4.8e-27, 37.65% id in 247 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3257
symbol: BP3257
gene_biotype: protein_coding
description:
  N-terminal region of a putative oxidoreductase (pseudogene); HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal domain.


ensembl_gene_id: BP3262
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: BP3263
symbol: trpG
gene_biotype: protein_coding
description:
  Similar to Pseudomonas putida anthranilate synthase component II TrpG SW:TRPG_PSEPU (P00901) (198 aa) fasta scores: E(): 7.8e-46, 64.73% id in 190 aa.


ensembl_gene_id: BP3264
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: BP3265
symbol: gph
gene_biotype: protein_coding
description:
  Putative phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.


ensembl_gene_id: BP3266
symbol: rpe
gene_biotype: protein_coding
description:
  Similar to Alcaligenes eutrophus ribulose-phosphate 3-epimerase, plasmid CbbEP or CfxE SW:RPEP_ALCEU (Q04539) (241 aa) fasta scores: E(): 1.1e-62, 69.74% id in 238 aa, and to Escherichia coli, and ribulose-phosphate 3-epimerase Rpe or Dod or b3386 or z4739 or ecs4228 SW:RPE_ECOLI (P32661) (225 aa) fasta scores: E(): 1.3e-58, 72.27% id in 220 aa.


ensembl_gene_id: BP3267
symbol: apaG
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa0591 TR:Q9I5U6 (EMBL:AE004495) (126 aa) fasta scores: E(): 9e-24, 56.19% id in 121 aa, and to Escherichia coli, and ApaA protein or b0050 or z0059 or ecs0055 SW:APAG_ECOLI (P05636) (125 aa) fasta scores: E(): 4.6e-21, 50.42% id in 117 aa.


ensembl_gene_id: BP3268
symbol: BP3268
gene_biotype: protein_coding
description:
  Putative membrane-bound transglycolase; Similar to Pseudomonas aeruginosa probable membrane-bound lytic murein transglycolase A Pa1222 TR:Q9I4B6 (EMBL:AE004552) (385 aa) fasta scores: E(): 8.8e-50, 41.99% id in 381 aa, and to many from Neisseria spp. eg. Neisseria meningitidis outer membrane lipoprotein Gna33 TR:Q9JPQ9 (EMBL:AF226404) (441 aa) fasta scores: E(): 2.7e-33, 34.7% id in 461 aa, and to Escherichia coli membrane-bound lytic murein transglycosylase A precursor MltA or Mlt or b2813 or z4130 or ecs3673 SW:MLTA_ECOLI (P46885) (365 aa) fasta scores: E(): 9.1e-16, 33.11% id in 302 aa.


ensembl_gene_id: BP3269
symbol: BP3269
gene_biotype: protein_coding
description:
  Putative monooxygenase; Similar to Pseudomonas aeruginosa probable FAD-dependent monooxygenase Pa5221 TR:Q9HTW9 (EMBL:AE004935) (405 aa) fasta scores: E(): 1.1e-33, 39.01% id in 387 aa, and to Escherichia coli 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase UbiF or b0662 SW:UBIF_ECOLI (P75728) (391 aa) fasta scores: E(): 2.1e-29, 34.17% id in 395 aa.


ensembl_gene_id: BP3270
symbol: dsbC
gene_biotype: protein_coding
description:
  Putative thiol:disulphide interchange protein (periplasmic); Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process (By similarity). Necessary for extracellular secretion of the pertussis toxin (PTX); Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: BP3271
symbol: BP3271
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative 2-hydroxyacid dehydrogenase SCC61A.17 TR:Q9KYH6 (EMBL:AL356595) (330 aa) fasta scores: E(): 1.2e-49, 49.67% id in 308 aa, and to Bacillus subtilis D-3-phosphoglycerate dehydrogenase SerA SW:SERA_BACSU (P35136) (525 aa) fasta scores: E(): 1.4e-22, 32.48% id in 274 aa; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: BP3273
symbol: ttcA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.


ensembl_gene_id: BP3274
symbol: folB
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: BP3275
symbol: BP3275
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to C-terminal portion of many eg. Salmonella typhimurium alkyl hydroperoxide reductase subunit F AhpF or stm0609 SW:AHPF_SALTY (P19480) (521 aa) fasta scores: E(): 8.1e-08, 28.84% id in 312 aa, and to Escherichia coli alkyl hydroperoxide reductase subunit F AhpF or b0606 SW:AHPF_ECOLI (P35340) (521 aa) fasta scores: E(): 2.4e-07, 27.65% id in 311 aa.


ensembl_gene_id: BP3276
symbol: BP3276
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein NMB1726 TR:Q9JY58 (EMBL:AE002523) (582 aa) fasta scores: E(): 1.1e-56, 40.9% id in 594 aa.


ensembl_gene_id: BP3277
symbol: BP3277
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase; Similar to Rhizobium meliloti probable enoyl-CoA hydratase FadB1 or r00366 or smc01153 SW:ECHH_RHIME (Q52995) (257 aa) fasta scores: E(): 5.4e-62, 68.6% id in 258 aa, and to Homo sapiens enoyl-CoA hydratase, mitochondrial precursor EchS1 SW:ECHM_HUMAN (P30084) (290 aa) fasta scores: E(): 2.9e-48, 54.11% id in 255 aa; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: BP3279
symbol: BP3279
gene_biotype: protein_coding
description:
  Putative exported protein (pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. Similar to Rhizobium meliloti hypothetical transmembrane protein Smc01184 TR:CAC46188 (EMBL:AL591787) (512 aa) fasta scores: E():1.3e-34, 31.14% id in 505 aa.


ensembl_gene_id: BP3281
symbol: BP3281
gene_biotype: protein_coding
description:
  Putative inner membrane ATP synthase protein; Similar to Neisseria meningitidis hypothetical protein Nmb1941 TR:Q9JXP8 (EMBL:AE002542) (117 aa) fasta scores: E(): 0.032, 32.69% id in 104 aa, and to Vibrio cholerae ATP synthase protein I AtpI or vc2771 SW:ATPZ_VIBCH (Q9KNG8) (129 aa) fasta scores: E(): 0.095, 39.7% id in 68 aa.


ensembl_gene_id: BP3282
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: BP3283
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase c chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: BP3284
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase B chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: BP3285
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: BP3286
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: BP3287
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: BP3288
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: BP3289
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: BP3291
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: BP3292
symbol: priA
gene_biotype: protein_coding
description:
  Putative primosomal protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: BP3293
symbol: rep
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.


ensembl_gene_id: BP3295
symbol: BP3295
gene_biotype: protein_coding
description:
  Putative peptidase; Similar to Bacillus halodurans carboxypeptidase G2 bh0352 TR:Q9KFW8 (EMBL:AP001508) (374 aa) fasta scores: E(): 1e-41, 37.46% id in 363 aa, and to Pseudomonas sp carboxypeptidase G2 precursor cpg2 SW:CBPG_PSES6 (P06621) (415 aa) fasta scores: E(): 2e-21, 26.41% id in 371 aa.


ensembl_gene_id: BP3298
symbol: BP3298
gene_biotype: protein_coding
description:
  Oligopeptide transport ATP-binding protein (pseudogene); ScanRegExp hit to PS00017, ATP/GTP-binding site motif A (P-loop).


ensembl_gene_id: BP3299
symbol: BP3299
gene_biotype: protein_coding
description:
  Putative binding-protein-dependent transport permease; Similar to Agrobacterium tumefaciens strC58 Agr_pat_363p TR:AAK90628 (EMBL:AE007895) (323 aa) fasta scores: E(): 2.2e-66, 53.43% id in 320 aa, and to Bacillus subtilis oligopeptide transport system permease protein AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): 1.9e-40, 36.64% id in 322 aa.


ensembl_gene_id: BP3302
symbol: BP3302
gene_biotype: protein_coding
description:
  Putative binding-protein-dependent transport protein (pseudogene); ScanRegExp hit to PS01040, Bacterial extracellular solute-binding proteins, family 5 signature.


ensembl_gene_id: BP3303
symbol: nnrD
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.


ensembl_gene_id: BP3304
symbol: BP3304
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase; Similar to Mycobacterium tuberculosis enoyl-CoA hydratase EchA15 or Rv2679 or Mtv010.03 TR:O53232 (EMBL:AL021186) (276 aa) fasta scores: E(): 7.6e-60, 59.1% id in 269 aa, and to Escherichia coli probable enoyl-CoA hydratase PaaG or b1394 SW:PAAG_ECOLI (P77467) (262 aa) fasta scores: E(): 2.7e-15, 29.11% id in 261 aa. Similar to BP0029, 51.331% identity in 263 aa overlap; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: BP3305
symbol: BP3305
gene_biotype: protein_coding
description:
  Similar to Caulobacter crescentus enoyl-CoA hydratase/isomerase family protein cc0397 TR:Q9AB37 (EMBL:AE005712) (256 aa) fasta scores: E(): 4.8e-33, 46.41% id in 237 aa, and to Mus musculus peroxisomal 3,2-trans-enoyl-CoA isomerase PecI SW:PECI_MOUSE (Q9WUR2) (358 aa) fasta scores: E(): 4.6e-20, 34.13% id in 249 aa.


ensembl_gene_id: BP3306
symbol: BP3306
gene_biotype: protein_coding
description:
  Similar to many eg. Rhizobium meliloti hypothetical protein Smc02150 TR:CAC41942 (EMBL:AL591783) (336 aa) fasta scores: E(): 8.8e-66, 57.37% id in 312 aa.


ensembl_gene_id: BP3307
symbol: BP3307
gene_biotype: protein_coding
description:
  Putative TetR-family trasncriptional regulator; Similar to many eg. Rhodococcus spNCIMB 9784. transcriptional repressor CamPR TR:AAK50621 (EMBL:AF323755) (206 aa) fasta scores: E(): 4.3e-13, 30.69% id in 202 aa.


ensembl_gene_id: BP3308
symbol: BP3308
gene_biotype: protein_coding
description:
  Putative acyl-CoA dehydrogenase; Similar to many eg. Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa1631 TR:Q9I391 (EMBL:AE004590) (384 aa) fasta scores: E(): 2.1e-106, 70.6% id in 381 aa, and to Clostridium acetobutylicum acyl-CoA dehydrogenase, short-chain specific Bcd or Cac2711 SW:ACDS_CLOAB (P52042) (379 aa) fasta scores: E(): 3.3e-46, 38.91% id in 370 aa.


ensembl_gene_id: BP3314
symbol: BP3314
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative copper oxidase, possibly exported Sma1041 TR:AAK65222 (EMBL:AE007246) (170 aa) fasta scores: E(): 9.2e-17, 43.75% id in 160 aa, and to Aeromonas veronii bvSobria. CopC associated with copper tolerance TR:Q9L912 (EMBL:AF187849) (177 aa) fasta scores: E(): 5.4e-16, 46.52% id in 144 aa.


ensembl_gene_id: BP3315
symbol: copA
gene_biotype: protein_coding
description:
  Copper resitance protein; Similar to Ralstonia metallidurans CopA protein TR:Q9F3S1 (EMBL:AJ278983) (614 aa) fasta scores: E(): 1.2e-133, 59.63% id in 602 aa, and to Pseudomonas syringae copper resistance protein A precursor CopA SW:COPA_PSESM (P12374) (609 aa) fasta scores: E(): 2.8e-95, 61.85% id in 603 aa, and to Escherichia coli copper resistance protein A precursor PcoA SW:PCOA_ECOLI (Q47452) (605 aa) fasta scores: E(): 5.4e-91, 59.05% id in 613 aa.


ensembl_gene_id: BP3316
symbol: copB
gene_biotype: protein_coding
description:
  Copper resistance protein; Similar to Pseudomonas aeruginosa copper resistance protein B precursor PcoB or Pa2064 TR:Q9I251 (EMBL:AE004633) (325 aa) fasta scores: E(): 3.3e-41, 42.76% id in 318 aa, and to Pseudomonas syringae copper resistance protein B precursor CopB SW:COPB_PSESM (P12375) (328 aa) fasta scores: E(): 4.2e-39, 42.66% id in 300 aa, and to Escherichia coli copper resistance protein B precursor PcoB SW:PCOB_ECOLI (Q47453) (296 aa) fasta scores: E(): 1.3e-34, 39.66% id in 295 aa.


ensembl_gene_id: BP3317
symbol: BP3317
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase/isomerase; Similar to Mycobacterium tuberculosis probable enoyl-CoA hydratase EchA6 or Rv0905 or Mt0928 or mtcy31.33 SW:ECH6_MYCTU (Q10533) (243 aa) fasta scores: E(): 2.9e-11, 34.41% id in 215 aa.


ensembl_gene_id: BP3320
symbol: BP3320
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa2602 TR:Q9I0N5 (EMBL:AE004689) (201 aa) fasta scores: E(): 2.3e-38, 55.31% id in 188 aa.


ensembl_gene_id: BP3321
symbol: BP3321
gene_biotype: protein_coding
description:
  Putative amidase; Similar to Rhizobium meliloti putative amidase Sma1377 TR:AAK65414 (EMBL:AE007262) (471 aa) fasta scores: E(): 1.2e-38, 35.2% id in 446 aa, and to Pseudomonas putida amidase SW:AMID_PSEPU (O69768) (466 aa) fasta scores: E(): 3.9e-24, 37.5% id in 456 aa.


ensembl_gene_id: BP3322
symbol: BP3322
gene_biotype: protein_coding
description:
  Similar to Streptococcus pneumoniae R6 ABC transporter substrate-binding protein-branched chain amino acid transport livJ TR:AAK99463 (EMBL:AE008443) (386 aa) fasta scores: E(): 3.5e-30, 33.76% id in 388 aa, and to Salmonella typhimurium leucine-specific binding protein precursor livk or livC SW:LIVK_SALTY (P17216) (369 aa) fasta scores: E(): 4.2e-22, 27.4% id in 354 aa.


ensembl_gene_id: BP3327
symbol: BP3327
gene_biotype: protein_coding
description:
  Putative nucleotidyl transferase; Similar to many eg. Neisseria meningitidis putative sugar-phosphate nucleotidyl transferase nma0615 TR:Q9JVZ0 (EMBL:AL162753) (231 aa) fasta scores: E(): 2.4e-43, 58.55% id in 222 aa.


ensembl_gene_id: BP3328
symbol: BP3328
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many eg. Pseudomonas aeruginosa hypothetical protein Pa0596 TR:Q9I5U1 (EMBL:AE004496) (338 aa) fasta scores: E(): 1.9e-52, 45.85% id in 338 aa.


ensembl_gene_id: BP3329
symbol: lptD
gene_biotype: protein_coding
description:
  Putative outer membrane (permeability) protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.


ensembl_gene_id: BP3330
symbol: surA
gene_biotype: protein_coding
description:
  Putative peptidyl-prolyl cis-trans isomerase; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.


ensembl_gene_id: BP3331
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: BP3332
symbol: garK
gene_biotype: protein_coding
description:
  Glycerate kinase; Similar to Escherichia coli glycerate kinase 2 GarK or b3124 SW:GRK2_ECOLI (P23524) (381 aa) fasta scores: E(): 2.8e-57, 49.6% id in 379 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1052 TR:Q9I4S2 (EMBL:AE004537) (381 aa) fasta scores: E(): 1.6e-81, 68.09% id in 373 aa.


ensembl_gene_id: BP3333
symbol: pykA
gene_biotype: protein_coding
description:
  Pyruvate kinase; Similar to Escherichia coli pyruvate kinase II PykA or b1854 SW:KPY2_ECOLI (P21599) (479 aa) fasta scores: E(): 2.1e-96, 59.32% id in 477 aa.


ensembl_gene_id: BP3334
symbol: BP3334
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein Pa5478 TR:Q9HT92 (EMBL:AE004960) (409 aa) fasta scores: E(): 6e-116, 78.18% id in 408 aa. C-terminus similar to Bacillus subtilis spore maturation protein B SpmB SW:SPMB_BACSU (P35158) (179 aa) fasta scores: E(): 3.4e-17, 41.61% id in 173 aa.


ensembl_gene_id: BP3336
symbol: BP3336
gene_biotype: protein_coding
description:
  N-terminal region of putative oxidoreductase (pseudogene); HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal domain.


ensembl_gene_id: BP3339
symbol: BP3339
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); 97 bp deletion in pertussis relative to parapertussis and bronchiseptica.


ensembl_gene_id: BP3340
symbol: BP3340
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative iron ABC transporter permease protein smb21430 TR:CAC49658 (EMBL:AL603646) (356 aa) fasta scores: E(): 4.7e-59, 52.41% id in 332 aa, and to Corynebacterium diphtheriae HmuU TR:Q9XD88 (EMBL:AF109162) (350 aa) fasta scores: E(): 1.4e-35, 37.69% id in 329 aa. Also similar to BP0344, 40.256% identity (42.568% ungapped) in 313 aa overlap; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: BP3341
symbol: cpoB
gene_biotype: protein_coding
description:
  Putative periplasmic protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: BP3342
symbol: pal
gene_biotype: protein_coding
description:
  Putative peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: BP3343
symbol: tolB
gene_biotype: protein_coding
description:
  Putative TolB-like translocation protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: BP3344
symbol: BP3344
gene_biotype: protein_coding
description:
  Proline-rich inner membrane protein; No significant database matches. Contains possible coiled-coil region at residues 131-202.


ensembl_gene_id: BP3345
symbol: BP3345
gene_biotype: protein_coding
description:
  Putative TolR-like translocation protein; Similar to Escherichia coli TolR protein or b0738 or z0906 or ecs0773 SW:TOLR_ECOLI (P05829) (142 aa) fasta scores: E(): 9.1e-09, 33.33% id in 138 aa.


ensembl_gene_id: BP3346
symbol: tolQ
gene_biotype: protein_coding
description:
  Putative TolQ-like translocation protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: BP3347
symbol: BP3347
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many eg. Pasteurella multocida hypothetical protein Pm0971 TR:Q9CM67 (EMBL:AE006136) (136 aa) fasta scores: E(): 1.4e-19, 43.9% id in 123 aa.


ensembl_gene_id: BP3348
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: BP3349
symbol: nudH
gene_biotype: protein_coding
description:
  Putative Nudix hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: BP3350
symbol: BP3350
gene_biotype: protein_coding
description:
  Two component response regulator; Similar to Salmonella typhimurium transcriptional regulatory protein TctD TR:AAL21670 (EMBL:M28368) (224 aa) fasta scores: E(): 1.1e-37, 50.68% id in 219 aa, and to Ralstonia solanacearum putative response regulator transcription regulator protein RSC2935 TR:CAD16642 (EMBL:AL646072) (235 aa) fasta scores: E(): 2.8e-55, 66.36% id in 223 aa.


ensembl_gene_id: BP3351
symbol: BP3351
gene_biotype: protein_coding
description:
  N-terminal region of a two component sensor kinase (partial); Partial CDS. This CDS is the N-terminal region of BP0501 which was disrupted by the integration of a prophage. This CDS lacks a stop codon. The sequence has been checked and believed to be correct. Similar to N-terminus of Rhizobium meliloti putative two-component sensor histidine kinase protein SMB20721 TR:CAC49828 (EMBL:AL603647) (465 aa) fasta scores: E(): 9.8, 32.3% id in 65 aa.


ensembl_gene_id: BP3352
symbol: BP3352
gene_biotype: protein_coding
description:
  Phage-related conserved hypothetical protein; Similar to Salmonella typhimurium gifsy-2 prophage stm1053 SWALL:Q8ZQ78 (EMBL:AE008745) (208 aa) fasta scores: E(): 6.8e-16, 38.83% id in 188 aa, and to Bacteriophage SPBc2 YoqW protein SWALL:O64131 (EMBL:AF020713) (224 aa) fasta scores: E(): 3.3e-09, 27.19% id in 228 aa; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: BP3355
symbol: BP3355
gene_biotype: protein_coding
description:
  Phage-related conserved hypothetical protein; Weakly similar to Bacteriophage N15 protein gp55 precursor 55 SW:VG55_BPN15 (O64363) (181 aa) fasta scores: E(): 0.00017, 31.76% id in 170 aa. Also similar to Escherichia coli hypothetical protein YdfP precursor YdfP SW:YDFP_ECOLI (P76158) (165 aa) fasta scores: E(): 4.5e-06, 32.71% id in 162 aa.


ensembl_gene_id: BP3356
symbol: BP3356
gene_biotype: protein_coding
description:
  Similar to Serratia marcescens phage lysozyme RegB SWALL:Q54423 (EMBL:U31763) (179 aa) fasta scores: E(): 0.05, 30.76% id in 169 aa, and to Bacteriophage phi-Ea1h lysozyme LyZ SWALL:Q9FZS7 (EMBL:AJ278614) (178 aa) fasta scores: E(): 0.079, 26.7% id in 191 aa.


ensembl_gene_id: BP3357
symbol: BP3357
gene_biotype: protein_coding
description:
  Phage-related conserved hypothetical protein; Weakly similar to Serratia marcescens extracellular secretory protein NucE TR:Q54418 (EMBL:U11698) (89 aa) fasta scores: E(): 0.26, 31.08% id in 74 aa, and to Haemophilus somnus holin TR:Q48281 (EMBL:U28154) (74 aa) fasta scores: E(): 2.6, 28.57% id in 63 aa.


ensembl_gene_id: BP3362
symbol: BP3362
gene_biotype: protein_coding
description:
  Phage-related conserved hypothetical protein; Similar to Bacteriophage D3 Orf26 TR:Q9MC95 (EMBL:AF165214) (909 aa) fasta scores: E(): 4.5e-23, 26.57% id in 700 aa, and to Bacteriophage HK022 GP24 TR:Q9MCU0 (EMBL:AF069308) (1183 aa) fasta scores: E(): 3.4e-08, 22.26% id in 1051 aa. Possible alternative translational start sites.


ensembl_gene_id: BP3363
symbol: BP3363
gene_biotype: protein_coding
description:
  Phage-related conserved hypothetical protein; Similar to Bacteriophage D3 Orf25 TR:Q9MC96 (EMBL:AF165214) (135 aa) fasta scores: E(): 0.0012, 32.03% id in 128 aa.


ensembl_gene_id: BP3364
symbol: BP3364
gene_biotype: protein_coding
description:
  Phage-related conserved hypothetical protein; Similar to Bacteriophage D3 Orf22 TR:Q9MC99 (EMBL:AF165214) (163 aa) fasta scores: E(): 0.41, 23.12% id in 173 aa.


ensembl_gene_id: BP3365
symbol: BP3365
gene_biotype: protein_coding
description:
  Phage-related conserved hypothetical protein; Similar to Bacteriophage D3 Orf21 TR:Q9MCA0 (EMBL:AF165214) (159 aa) fasta scores: E(): 9.9e-05, 34.31% id in 102 aa, and weakly similar to the C-terminal portion of Drosophila melanogaster protein CG3415 TR:AAK92917 (EMBL:AE003501) (598 aa) fasta scores: E(): 6.4, 26.59% id in 94 aa.


ensembl_gene_id: BP3366
symbol: BP3366
gene_biotype: protein_coding
description:
  Similar to Bacteriophage lambda minor tail protein precursor H SW:VMTH_LAMBD (P03736) (853 aa) fasta scores: E(): 1.3e-26, 26.31% id in 859 aa, and to Escherichia coli O157:H7 putative tail length tape measure protein precursor ECS0837 TR:BAB34260 (EMBL:AP002553) (1021 aa) fasta scores: E(): 9.4e-34, 26.83% id in 831 aa.


ensembl_gene_id: BP3367
symbol: BP3367
gene_biotype: protein_coding
description:
  Similar to Yersinia pestis hypothetical phage protein Ypo2118 ypo2118 SWALL:Q8ZEP2 (EMBL:AJ414151) (73 aa) fasta scores: E(): 1.2e-08, 52.05% id in 73 aa.


ensembl_gene_id: BP3368
symbol: BP3368
gene_biotype: protein_coding
description:
  Similar to Yersinia pestis hypothetical phage protein Ypo2117 ypo2117 SWALL:Q8ZEP3 (EMBL:AJ414151) (103 aa) fasta scores: E(): 2.7e-07, 36.79% id in 106 aa.


ensembl_gene_id: BP3369
symbol: BP3369
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum hypothetical protein rsc1689 rsc1689 or rs04083 SWALL:Q8XYR9 (EMBL:AL646065) (217 aa) fasta scores: E(): 4.3e-22, 41.07% id in 168 aa.


ensembl_gene_id: BP3370
symbol: BP3370
gene_biotype: protein_coding
description:
  Similar to Escherichia coli O157:H7 hypothetical protein ECS3504 TR:BAB36927 (EMBL:AP002562) (188 aa) fasta scores: E(): 2.5e-14, 37.5% id in 144 aa. C-terminal region is similar to bacteriophage T7 gene 3.8 hypothetical protein SW:Y38_BPT7 (P03797) (121 aa) fasta scores: E(): 0.0023, 30.39% id in 102 aa.


ensembl_gene_id: BP3371
symbol: BP3371
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti hypothetical protein MLR8015 TR:Q984G5 (EMBL:AP003013) (137 aa) fasta scores: E(): 0.0066, 30.43% id in 115 aa.


ensembl_gene_id: BP3372
symbol: BP3372
gene_biotype: protein_coding
description:
  Weakly similar to Yersinia pestis hypothetical phage protein Ypo2114 ypo2114 SWALL:Q8ZEP6 (EMBL:AJ414151) (194 aa) fasta scores: E(): 1.8e-08, 36.93% id in 111 aa.


ensembl_gene_id: BP3373
symbol: BP3373
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti hypothetical protein MLR8012 TR:Q984G8 (EMBL:AP003013) (130 aa) fasta scores: E(): 0.25, 29.26% id in 123 aa.


ensembl_gene_id: BP3382
symbol: BP3382
gene_biotype: protein_coding
description:
  Similar to Yersinia pestis hypothetical phage protein Ypo2108 ypo2108 SWALL:Q8ZEQ2 (EMBL:AJ414151) (370 aa) fasta scores: E(): 4.5e-51, 43.61% id in 360 aa, and to Deinococcus radiodurans head morphogenesis protein, putative dra0097 SWALL:Q9RZ57 (EMBL:AE001862) (253 aa) fasta scores: E(): 0.73, 23.44% id in 273 aa.


ensembl_gene_id: BP3383
symbol: BP3383
gene_biotype: protein_coding
description:
  Phage-related conserved hypothetical protein; Poor database matches. Similar to the N-terminal region of bacteriophage MB78 protein Gp62 TR:Q9T0Q3 (EMBL:Y19202) (540 aa) fasta scores: E(): 1.8e-30, 30.54% id in 455 aa.


ensembl_gene_id: BP3384
symbol: BP3384
gene_biotype: protein_coding
description:
  Putative phage terminase; Similar to Bacillus subtilis PBSX phage terminase large subunit XtmB SW:XTMB_BACSU (P39786) (433 aa) fasta scores: E(): 0.39, 21.1% id in 417 aa, and to Yersinia pestis hypothetical protein YPMT1.24c TR:O68741 (EMBL:AF074611) (418 aa) fasta scores: E(): 9.3e-18, 27.23% id in 437 aa.


ensembl_gene_id: BP3385
symbol: BP3385
gene_biotype: protein_coding
description:
  Similar to Lactococcus lactis bacteriophage Tuc2009 hypothetical protein TR:Q9AYX3 (EMBL:AF109874) (153 aa) fasta scores: E(): 1.9e-11, 44.11% id in 102 aa, and to Bacillus halodurans hypothetical protein BH3534 TR:Q9K739 (EMBL:AP001519) (159 aa) fasta scores: E(): 7.4e-10, 41.12% id in 107 aa.


ensembl_gene_id: BP3388
symbol: BP3388
gene_biotype: protein_coding
description:
  Phage-related hypothetical protein (pseudogene); This CDS is disrupted by the insertion of IS481 element. No significant database matches.


ensembl_gene_id: BP3390
symbol: BP3390
gene_biotype: protein_coding
description:
  Putative phage repressor protein; No significant database matches to the full length CDS. C-terminus is similar to the C-terminal region of bacteriophage D3 repressor protein cI SW:RPC1_BPD3 (Q37906) (223 aa) fasta scores: E(): 1.9e-05, 28.67% id in 143 aa, and to Neisseria meningitidis putative regulator nma1884 TR:Q9JTC1 (EMBL:AL162757) (234 aa) fasta scores: E(): 7e-06, 28.72% id in 188 aa; Belongs to the peptidase S24 family.


ensembl_gene_id: BP3391
symbol: BP3391
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Poor database matches. Similar to Neisseria meningitidis hypothetical protein NNMB2100 TR:Q9JXD3 (EMBL:AE002559) (77 aa) fasta scores: E(): 2.4, 35.29% id in 51 aa.


ensembl_gene_id: BP3393
symbol: BP3393
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative transmembrane protein smc02882 TR:CAC41594 (EMBL:AL591782) (244 aa) fasta scores: E(): 0.09, 24.64% id in 211 aa.


ensembl_gene_id: BP3394
symbol: BP3394
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Ralstonia solanacearum putative thioredoxin-like protein Rsc0067 or Rs02246 SWALL:Q8Y3B3 (EMBL:AL646057) (129 aa) fasta scores: E(): 7.1e-20, 51.12% id in 133 aa.


ensembl_gene_id: BP3395
symbol: BP3395
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative ATP-dependent RNA helicase RhlE or b0797 SW:RHLE_ECOLI (P25888) (454 aa) fasta scores: E(): 9e-72, 50% id in 456 aa; Belongs to the DEAD box helicase family.


ensembl_gene_id: BP3396
symbol: BP3396
gene_biotype: protein_coding
description:
  Putative conserved inner membrane protein; Similar to Streptomyces avermitilis hypothetical 10.3 kDa protein TR:BAB69324 (EMBL:AB070950) (97 aa) fasta scores: E(): 0.00047, 33.67% id in 98 aa, and to Staphylococcus aureus (strain N315) hypothetical protein Sas001 or Sav0011 TR:BAB56173 (EMBL:AP003129) (109 aa) fasta scores: E(): 0.19, 26.47% id in 102 aa.


ensembl_gene_id: BP3397
symbol: BP3397
gene_biotype: protein_coding
description:
  Similar to Rhodobacter sphaeroides putative membrane protein TR:Q9KX17 (EMBL:Y09560) (235 aa) fasta scores: E(): 1.5e-15, 28.94% id in 228 aa.


ensembl_gene_id: BP3398
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: BP3399
symbol: BP3399
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein NMA0721 TR:Q9JVS1 (EMBL:AL162754) (67 aa) fasta scores: E(): 6.4e-07, 48.27% id in 58 aa.


ensembl_gene_id: BP3401
symbol: BP3401
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical protein YheT or b3353 SW:YHET_ECOLI (P45524) (340 aa) fasta scores: E(): 1.1e-31, 36.8% id in 269 aa.


ensembl_gene_id: BP3402
symbol: BP3402
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Vibrio cholerae hypothetical protein Vc2164 TR:Q9KQ40 (EMBL:AE004288) (484 aa) fasta scores: E(): 8.4e-33, 31.91% id in 495 aa.


ensembl_gene_id: BP3403
symbol: BP3403
gene_biotype: protein_coding
description:
  Similar to Bacillus subtilis UTP--glucose-1-phosphate uridylyltransferase GtaB SW:GTAB_BACSU (Q05852) (292 aa) fasta scores: E(): 1.3e-50, 54.68% id in 267 aa.


ensembl_gene_id: BP3404
symbol: BP3404
gene_biotype: protein_coding
description:
  Putative inner membrane protein; Weakly similar to Streptomyces coelicolor putative integral membrane protein 2SCG58.15 TR:Q9FC98 (EMBL:AL391017) (316 aa) fasta scores: E(): 6.4e-07, 24.11% id in 282 aa.


ensembl_gene_id: BP3405
symbol: ompQ
gene_biotype: protein_coding
description:
  Outer membrane porin protein OmpQ; Previously described as Bordetella pertussis OmpQ TR:Q45342 (EMBL:U16266) (364 aa) fasta scores: E(): 1.5e-148, 99.72% id in 364 aa. Similar to Bordetella pertussis outer membrane porin protein precursor SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): 2.4e-13, 34.25% id in 400 aa, and to Neisseria meningitidis major outer membrane protein Porb or nma0398 SW:OMB_NEIMA (P57042) (329 aa) fasta scores: E(): 7e-05, 24.5% id in 351 aa.


ensembl_gene_id: BP3410
symbol: BP3410
gene_biotype: protein_coding
description:
  Putative inner membrane protein; Similar to Treponema pallidum conserved hypothetical integral membrane protein tp1034 TR:O83997 (EMBL:AE001271) (341 aa) fasta scores: E(): 0.00026, 26.87% id in 346 aa, and to Escherichia coli hypothetical protein YrbG or b3196 SW:YRBG_ECOLI (P45394) (325 aa) fasta scores: E(): 0.016, 25.64% id in 351 aa.


ensembl_gene_id: BP3411
symbol: BP3411
gene_biotype: protein_coding
description:
  Putative Xaa-Pro aminopeptidase; Similar to Pseudomonas aeruginosa aminopeptidase P PepP or pa5224 TR:Q9HTW6 (EMBL:AE004935) (444 aa) fasta scores: E(): 7.3e-84, 51.14% id in 436 aa, and to Escherichia coli Xaa-Pro aminopeptidase PepP or b2908 SW:AMPP_ECOLI (P15034) (440 aa) fasta scores: E(): 2.2e-66, 44.95% id in 436 aa; Belongs to the peptidase M24B family.


ensembl_gene_id: BP3413
symbol: BP3413
gene_biotype: protein_coding
description:
  Putative monooxygenase; Similar to Pseudomonas aeruginosa UbiH protein or pa5223 TR:Q9HTW7 (EMBL:AE004935) (394 aa) fasta scores: E(): 1.1e-26, 37.34% id in 399 aa, and to Escherichia coli 2-octaprenyl-6-methoxyphenol hydroxylase UbiH or VisB or b2907 SW:UBIH_ECOLI (P25534) (392 aa) fasta scores: E(): 1.3e-25, 34.17% id in 398 aa.


ensembl_gene_id: BP3414
symbol: dusB
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.


ensembl_gene_id: BP3415
symbol: fis
gene_biotype: protein_coding
description:
  DNA-binding protein; Similar to Escherichia coli, DNA-binding protein Fis or b3261 or z4621 or ecs4133 or stm3385 or sty3565 SW:FIS_ECOLI (P11028) (98 aa) fasta scores: E(): 1.9e-07, 40.9% id in 66 aa; Belongs to the transcriptional regulatory Fis family.


ensembl_gene_id: BP3416
symbol: purH
gene_biotype: protein_coding
description:
  Similar to Escherichia coli bifunctional purine biosynthesis protein PurH [includes: phosphoribosylaminoimidazolecarboxamide formyltransferase PurH or b4006 SW:PUR9_ECOLI (P15639) (529 aa) fasta scores: E(): 1.4e-112, 58.11% id in 530 aa.


ensembl_gene_id: BP3417
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: BP3418
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: BP3419
symbol: BP3419
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to many proposed oxidoreductases eg. Caulobacter crescentus NADH-ubiquinone oxidoreductase 39 kDa subunit precursor cc3604 TR:Q9A2G1 (EMBL:AE006018) (319 aa) fasta scores: E(): 1.6e-35, 39.8% id in 309 aa.


ensembl_gene_id: BP3420
symbol: BP3420
gene_biotype: protein_coding
description:
  Putative serine/threonine dehydratase; Similar to Mus musculus serine racemase Srr TR:Q9QZX7 (EMBL:AF148321) (339 aa) fasta scores: E(): 1.7e-41, 42.85% id in 315 aa, and to Escherichia coli threonine dehydratase catabolic TdcB or b3117 or z4469 or ecs3997 SW:THD2_ECOLI (P05792) (329 aa) fasta scores: E(): 6.6e-34, 38.03% id in 305 aa.


ensembl_gene_id: BP3421
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: BP3422
symbol: BP3422
gene_biotype: protein_coding
description:
  Similar to Escherichia coli ATP-dependent DNA helicase RecQ or b3822 SW:RECQ_ECOLI (P15043) (607 aa) fasta scores: E(): 2.3e-87, 45.07% id in 599 aa; putative ATP-dependent DNA helicase.


ensembl_gene_id: BP3425
symbol: BP3425
gene_biotype: protein_coding
description:
  Putative exported protein (pseudogene); Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: BP3426
symbol: BP3426
gene_biotype: protein_coding
description:
  Putative amidase; Similar to Mycobacterium smegmatis nicotinamidase/pyrazinamidase PzaA TR:Q9ZHK8 (EMBL:AF058285) (468 aa) fasta scores: E(): 1.4e-42, 37.21% id in 481 aa, and to Pseudomonas putida amidase SW:AMID_PSEPU (O69768) (466 aa) fasta scores: E(): 4.4e-35, 37.75% id in 482 aa; Belongs to the amidase family.


ensembl_gene_id: BP3427
symbol: BP3427
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid binding protein (partial); Partial CDS. May be disrupted by a recombination event. Upstream region deleted relative to B. parapertussis and B. bronchiseptica. Similar to the C-terminal portion of many larger hypothetical proteins eg. Aeropyrum pernix 430aa long hypothetical leu/ile/val-binding protein ape2521 TR:Q9Y8W3 (EMBL:AP000064) (430 aa) fasta scores: E(): 8.4e-06, 25.19% id in 254 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter pa4913 TR:Q9HUQ0 (EMBL:AE004904) (374 aa) fasta scores: E(): 0.00015, 26.12% i [...]


ensembl_gene_id: BP3428
symbol: BP3428
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid transport permease (partial); Partial CDS. Disrupted by a recombination event. Upstream region deleted relative to B. parapertussis and B. bronchiseptica. Similar to many transporters eg. Deinococcus radiodurans branched-chain amino acid ABC transporter, permease protein dr2120 TR:Q9RSK4 (EMBL:AE002047) (310 aa) fasta scores: E(): 4.1e-14, 32.77% id in 238 aa, and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein livh livh or liva or stm3563 SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 1.2e-05, 2 [...]


ensembl_gene_id: BP3429
symbol: BP3429
gene_biotype: protein_coding
description:
  Similar to Streptococcus pneumoniae branched-chain amino acid ABC transporter permease protein sp0750 TR:Q97RP9 (EMBL:AE007382) (289 aa) fasta scores: E(): 1.4e-27, 33.56% id in 286 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease protein BraD or pa1073 SW:BRAD_PSEAE (P21627) (307 aa) fasta scores: E(): 2.1e-13, 30.06% id in 296 aa.


ensembl_gene_id: BP3430
symbol: BP3430
gene_biotype: protein_coding
description:
  Similar to many predicted transporters eg. Rhizobium meliloti putative high-affinity branched-chain amino acid transport ATP-binding ABC transporter protein smc02357 TR:CAC47163 (EMBL:AL591791) (244 aa) fasta scores: E(): 4.7e-23, 36.17% id in 235 aa, and to Thermotoga maritima ABC transporter ATP-binding protein Tm1054 TR:Q9X0E4 (EMBL:AE001765) (236 aa) fasta scores: E(): 1e-22, 34.61% id in 234 aa.


ensembl_gene_id: BP3431
symbol: BP3431
gene_biotype: protein_coding
description:
  Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, ATP-binding protein Dra0260 TR:Q9RYP9 (EMBL:AE001863) (238 aa) fasta scores: E(): 6.1e-27, 41.35% id in 237 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG or pa1070 SW:BRAG_PSEAE (P21630) (233 aa) fasta scores: E(): 4e-22, 38.02% id in 213 aa.


ensembl_gene_id: BP3432
symbol: cysI
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa sulfite reductase CysI TR:O31037 (EMBL:AF026066) (552 aa) fasta scores: E(): 1.5e-133, 64.31% id in 566 aa.


ensembl_gene_id: BP3433
symbol: BP3433
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA1837 TR:Q9I2Q8 (EMBL:AE004609) (165 aa) fasta scores: E(): 1.4e-15, 37.34% id in 158 aa, and to Caulobacter crescentus hypothetical protein CC1120 TR:Q9A974 (EMBL:AE005790) (168 aa) fasta scores: E(): 1e-09, 35.57% id in 149 aa.


ensembl_gene_id: BP3434
symbol: BP3434
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pasteurella haemolytica outer membrane lipoprotein 3 precursor PlpC SW:PLPC_PASHA (Q08870) (263 aa) fasta scores: E(): 1.2e-34, 41.5% id in 265 aa, and to Rhizobium meliloti putative outer membrane lipoprotein transmembrane SMC03157 TR:CAC47467 (EMBL:AL591792) (258 aa) fasta scores: E(): 1.5e-39, 45.8% id in 262 aa.


ensembl_gene_id: BP3435
symbol: BP3435
gene_biotype: protein_coding
description:
  Similar to Arabidopsis thaliana hypothetical protein MZE19.4 TR:Q9LHE6 (EMBL:AP002050) (450 aa) fasta scores: E(): 1.2e-14, 31.69% id in 426 aa.


ensembl_gene_id: BP3437
symbol: BP3437
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Neisseria meningitidis CinA-related protein NMB2128 TR:Q9JXC2 (EMBL:AE002560) (266 aa) fasta scores: E(): 6.9e-42, 51.66% id in 240 aa, and to the N-terminal region of Streptococcus pneumoniae putative competence-damage protein CinA SW:CINA_STRPN (P54184) (418 aa) fasta scores: E(): 0.1, 24.51% id in 257 aa.


ensembl_gene_id: BP3438
symbol: BP3438
gene_biotype: protein_coding
description:
  IclR family transcriptional regulator; Similar to Escherichia coli acetate operon repressor IclR SW:ICLR_ECOLI (P16528) (274 aa) fasta scores: E(): 1e-19, 30.76% id in 273 aa, and to Streptomyces coelicolor putative transcriptional regulator SCAH10.11c TR:Q9RKU6 (EMBL:AL132824) (270 aa) fasta scores: E(): 4.8e-22, 37.4% id in 270 aa.


ensembl_gene_id: BP3439
symbol: dnt
gene_biotype: protein_coding
description:
  Dermonecrotic toxin; Previously sequenced as Bordetella pertussis dermonecrotic toxin Dnt TR:Q45336 (EMBL:U10527) (1451 aa) fasta scores: E(): 0, 100% id in 1451 aa. Almost identical to Bordetella bronchiseptica dermonecrotizing toxin TR:Q9S5D5 (EMBL:AB020025) (1464 aa) fasta scores: E(): 0, 98.97% id in 1464 aa.


ensembl_gene_id: BP3440
symbol: BP3440
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein SMB20025 TR:CAC48428 (EMBL:AL603642) (325 aa) fasta scores: E(): 9.8e-62, 54.4% id in 318 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_C_180p TR:AAK85936 (EMBL:AE007953) (337 aa) fasta scores: E(): 1.6e-58, 52.58% id in 310 aa.


ensembl_gene_id: BP3441
symbol: BP3441
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Alcaligenes eutrophus granule-associated protein PhaP TR:Q44013 (EMBL:X85729) (192 aa) fasta scores: E(): 5.6e-23, 44.79% id in 192 aa. Weakly similar to an internal region of Escherichia coli membrane protein involved in colicin uptake TolA SW:TOLA_ECOLI (P19934) (421 aa) fasta scores: E(): 1.4, 27.02% id in 185 aa.


ensembl_gene_id: BP3442
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: BP3443
symbol: bpt
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: BP3445
symbol: aat
gene_biotype: protein_coding
description:
  Putative leucyl/phenylalanyl-tRNA--protein transferase (Pseudogene); (GC)4 in pertussis; (GC)5 in parapertussis and bronchiseptica.


ensembl_gene_id: BP3446
symbol: BP3446
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae LysR family transcriptional regulator VCA0982 TR:Q9KKW8 (EMBL:AE004424) (299 aa) fasta scores: E(): 2.6e-40, 42.25% id in 284 aa, and to Rhizobium loti transcriptional regulator MLL2784 TR:Q98HN8 (EMBL:AP003000) (307 aa) fasta scores: E(): 3e-41, 41.41% id in 297 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3447
symbol: BP3447
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Bacillus halodurans hypothetical protein YfiD TR:Q9RC47 (EMBL:AB024562) (129 aa) fasta scores: E(): 6.6e-06, 36.44% id in 118 aa, and to Bacillus subtilis hypothetical protein YdfP TR:P96694 (EMBL:AB001488) (129 aa) fasta scores: E(): 4.2e-07, 35.48% id in 124 aa.


ensembl_gene_id: BP3448
symbol: BP3448
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum hypothetical protein Rsc0562 or Rs04903 SWALL:Q8Y1X5 (EMBL:AL646060) (195 aa) fasta scores: E(): 2.6e-19, 37.68% id in 207 aa.


ensembl_gene_id: BP3449
symbol: BP3449
gene_biotype: protein_coding
description:
  Putative membrane protein; Poor database matches. C-terminus is similar to similar to Rhizobium meliloti putative signal peptide protein SMC00809 TR:Q92RU0 (EMBL:AL591784) (88 aa) fasta scores: E(): 0.0094, 40.26% id in 77 aa. Possible alternative translational start site.


ensembl_gene_id: BP3451
symbol: BP3451
gene_biotype: protein_coding
description:
  Pseudogene. This CDS is disrupted by the insertion of IS481 element. This CDS is the C-terminal region of BP3104. Similar to C-terminal regions of Escherichia coli homoserine/homoserine lactone efflux protein RhtB SW:RHTB_ECOLI (P27847) (206 aa) fasta scores: E(): 0.00063, 28.39% id in 81 aa, and Rhizobium meliloti putative amino acid efflux transmembrane protein SMC02981 TR:Q92LY9 (EMBL:AL591792) (211 aa) fasta scores: E(): 1.8e-10, 45.67% id in 81 aa. CDS is truncated by the insertion of the upstream IS element and subsequent recombination events.


ensembl_gene_id: BP3452
symbol: BP3452
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa probable transcriptional regulator PA0797 TR:Q9I5E1 (EMBL:AE004515) (240 aa) fasta scores: E(): 5.1e-09, 27.42% id in 237 aa, and to Streptomyces seoulensis putative transcriptonal regulator PdhR TR:Q9JP85 (EMBL:AF047034) (207 aa) fasta scores: E(): 2.6e-08, 31.73% id in 208 aa.


ensembl_gene_id: BP3453
symbol: BP3453
gene_biotype: protein_coding
description:
  Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG SW:ILVG_ECOLI (P00892) (548 aa) fasta scores: E(): 3e-50, 31.28% id in 537 aa, and to Pseudomonas aeruginosa probable decarboxylase PA2035 TR:Q9I280 (EMBL:AE004629) (552 aa) fasta scores: E(): 4.7e-121, 59.13% id in 553 aa; Belongs to the TPP enzyme family.


ensembl_gene_id: BP3454
symbol: BP3454
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Comamonas testosteroni hypothetical protein OrfJ TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2.4e-43, 44.41% id in 322 aa, and to Rhizobium meliloti hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 7.9e-44, 40.68% id in 322 aa.


ensembl_gene_id: BP3455
symbol: BP3455
gene_biotype: protein_coding
description:
  Putative taurine dioxygenase; Similar to Escherichia coli alpha-ketoglutarate-dependent taurine dioxygenase TauD SW:TAUD_ECOLI (P37610) (282 aa) fasta scores: E(): 5.4e-31, 35.08% id in 285 aa, and to Pseudomonas aeruginosa taurine dioxygenase PA3935 TR:Q9HX81 (EMBL:AE004811) (277 aa) fasta scores: E(): 3.8e-35, 40.98% id in 283 aa.


ensembl_gene_id: BP3456
symbol: maeB-3
gene_biotype: protein_coding
description:
  Similar to Escherichia coli NADP-dependent malic enzyme MaeB SW:MAO2_ECOLI (P76558) (759 aa) fasta scores: E(): 1.6e-175, 60.07% id in 759 aa, and to Rhizobium meliloti NAD-dependent malic enzyme Dme SW:MAO1_RHIME (O30807) (770 aa) fasta scores: E(): 3.4e-169, 58.49% id in 759 aa.


ensembl_gene_id: BP3457
symbol: BP3457
gene_biotype: protein_coding
description:
  LysR family regulatory protein; Similar to Agrobacterium tumefaciens pca operon transcriptional activator PcaQ SW:PCAQ_AGRTU (P52668) (311 aa) fasta scores: E(): 4.6e-15, 28.8% id in 302 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA2206 TR:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: E(): 2.4e-23, 30.36% id in 303 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3458
symbol: BP3458
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): 6.4e-39, 37.22% id in 317 aa, and to Rhizobium sp probable peptide ABC transporter permease protein Y4TP SW:Y4TP_RHISN (Q53191) (313 aa) fasta scores: E(): 1.7e-58, 51.43% id in 313 aa.


ensembl_gene_id: BP3459
symbol: BP3459
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; Similar to Escherichia coli dipeptide transport system permease protein DppC SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 5.6e-34, 38.04% id in 276 aa, and to Rhizobium loti ABC transporter permease protein MLR6290 TR:Q989T2 (EMBL:AP003008) (280 aa) fasta scores: E(): 6.8e-51, 52.06% id in 267 aa.


ensembl_gene_id: BP3460
symbol: BP3460
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YliA SW:YLIA_ECOLI (P75796) (629 aa) fasta scores: E(): 9.7e-133, 62.29% id in 602 aa. C-terminal region is similar to Bacillus subtilis oligopeptide transport ATP-binding protein AppF SW:APPF_BACSU (P42065) (329 aa) fasta scores: E(): 1.5e-47, 47.07% id in 325 aa.


ensembl_gene_id: BP3462
symbol: BP3462
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein (pseudogene); Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.


ensembl_gene_id: BP3463
symbol: BP3463
gene_biotype: protein_coding
description:
  LysR family regulatory protein; Similar to Escherichia coli cyn operon transcriptional activator CynR SW:CYNR_ECOLI (P27111) (311 aa) fasta scores: E(): 7.6e-13, 25.08% id in 295 aa, and to Rhizobium leguminosarum LysR family regulatory protein TR:Q52868 (EMBL:U39409) (300 aa) fasta scores: E(): 1.1e-18, 31.54% id in 298 aa.


ensembl_gene_id: BP3464
symbol: BP3464
gene_biotype: protein_coding
description:
  Putative exported protein; Poor database matches. C-terminus is similar to an internal region of Bordetella bronchiseptica putative membrane protein BbLPS1.18c TR:O87991 (EMBL:AJ007747) (340 aa) fasta scores: E(): 1.2e-09, 30.3% id in 198 aa.


ensembl_gene_id: BP3465
symbol: BP3465
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein SMC01149 TR:CAC41808 (EMBL:AL591783) (160 aa) fasta scores: E(): 3.7e-20, 40.76% id in 157 aa, and to Caulobacter crescentus hypothetical protein CC3077 TR:Q9A3X4 (EMBL:AE005971) (158 aa) fasta scores: E(): 3.4e-18, 37.5% id in 152 aa.


ensembl_gene_id: BP3466
symbol: BP3466
gene_biotype: protein_coding
description:
  Putative ArsR family transcriptional regulator; Similar to Rhizobium loti transcriptional regulator MLL3772 TR:Q98FH5 (EMBL:AP003002) (111 aa) fasta scores: E(): 1.5e-16, 47.27% id in 110 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_C_3675p TR:AAK87782 (EMBL:AE008119) (124 aa) fasta scores: E(): 8.9e-17, 46.42% id in 112 aa. Also similar to BP2145, 43.137% identity (43.137% ungapped) in 102 aa overlap.


ensembl_gene_id: BP3467
symbol: BP3467
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Escherichia coli suppressor of OmpF assembly mutants, outer membrane protein AsmA SW:ASMA_ECOLI (P28249) (617 aa) fasta scores: E(): 0.0063, 23.79% id in 395 aa, and to Vibrio cholerae AsmA protein VC1039 TR:Q9KT66 (EMBL:AE004185) (703 aa) fasta scores: E(): 5.5e-20, 25.44% id in 837 aa.


ensembl_gene_id: BP3468
symbol: BP3468
gene_biotype: protein_coding
description:
  Hypothetical protein; Poor database matches. Similar to the N-terminal regions of Streptomyces coelicolor hypothetical protein SCG20A.02 TR:Q9K3N8 (EMBL:AL360055) (275 aa) fasta scores: E(): 0.025, 29.6% id in 125 aa, and Pseudomonas aeruginosa hypothetical protein PA3022 TR:Q9HZI4 (EMBL:AE004727) (268 aa) fasta scores: E(): 0.015, 31.06% id in 103 aa.


ensembl_gene_id: BP3469
symbol: BP3469
gene_biotype: protein_coding
description:
  Putative transport protein; Similar to Acinetobacter calcoaceticus benzoate membrane transport protein BenE SW:BENE_ACICA (P07775) (394 aa) fasta scores: E(): 1.1e-45, 40.21% id in 373 aa, and to Rhizobium loti hypothetical protein MLR5064 TR:Q98CP3 (EMBL:AP003005) (382 aa) fasta scores: E(): 3.5e-45, 39.72% id in 370 aa.


ensembl_gene_id: BP3470
symbol: fdx-3
gene_biotype: protein_coding
description:
  Ferredoxin; Similar to Chromatium vinosum ferredoxin Fdx SW:FER_CHRVI (P00208) (82 aa) fasta scores: E(): 1.2e-17, 61.25% id in 80 aa, and to Pseudomonas aeruginosa ferredoxin PA0362 TR:Q9I6D2 (EMBL:AE004474) (83 aa) fasta scores: E(): 2.7e-21, 66.26% id in 83 aa.


ensembl_gene_id: BP3471
symbol: coaD
gene_biotype: protein_coding
description:
  Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: BP3472
symbol: BP3472
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli putative methylase YhhF SW:YHHF_ECOLI (P10120) (198 aa) fasta scores: E(): 4.3e-24, 44.94% id in 198 aa, and to Salmonella enterica subspenterica serovar Typhi conserved hypothetical protein STY4239 TR:CAD08058 (EMBL:AL627281) (198 aa) fasta scores: E(): 1.2e-23, 45.02% id in 191 aa.


ensembl_gene_id: BP3473
symbol: ftsY
gene_biotype: protein_coding
description:
  Cell division protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: BP3476
symbol: BP3476
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); In-frame TGA stop codon in pertussis; TGG in parapertussis and bronchiseptica.


ensembl_gene_id: BP3477
symbol: BP3477
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; Similar to Escherichia coli phosphonates transport system permease protein PhnE SW:PHNE_ECOLI (P16683) (276 aa) fasta scores: E(): 4.8e-31, 39.54% id in 263 aa, and to Pseudomonas stutzeri putative inner membrane component of binding-protein-dependent phosphite transporter protein PtxC TR:O69053 (EMBL:AF061070) (275 aa) fasta scores: E(): 2.4e-26, 36.96% id in 257 aa.


ensembl_gene_id: BP3478
symbol: BP3478
gene_biotype: protein_coding
description:
  Putative transport system ATP-binding protein (pseudogene); ScanRegExp hit to PS00211, ABC transporters family signature. Confirmed by InterPro eMOTIF pattern match.


ensembl_gene_id: BP3481
symbol: BP3481
gene_biotype: protein_coding
description:
  Putative exported protein; Weakly similar to Escherichia coli phosphonates-binding periplasmic protein precursor PhnD SW:PHND_ECOLI (P16682) (338 aa) fasta scores: E(): 6.7e-09, 23.91% id in 276 aa, and to Pseudomonas stutzeri putative binding protein component of binding-protein-dependent phosphite transporter PtxB TR:O69052 (EMBL:AF061070) (287 aa) fasta scores: E(): 6.9e-14, 28.13% id in 263 aa.


ensembl_gene_id: BP3482
symbol: BP3482
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; Similar to Streptomyces coelicolor glycerol operon regulatory protein GylR SW:GYLR_STRCO (P15360) (254 aa) fasta scores: E(): 3.9e-09, 26.74% id in 258 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA2010 TR:Q9I2A1 (EMBL:AE004627) (267 aa) fasta scores: E(): 7.1e-22, 34.45% id in 267 aa.


ensembl_gene_id: BP3483
symbol: BP3483
gene_biotype: protein_coding
description:
  Haloacid dehalogenase-like hydrolase; Poor database matches. Weakly similar to Mycobacterium leprae hypothetical protein ML0089 TR:Q9CDB9 (EMBL:AL583917) (281 aa) fasta scores: E(): 2.2, 25.44% id in 279 aa, and to Streptomyces coelicolor conserved hypothetical protein SCD16A.02c TR:Q9XAS3 (EMBL:AL078618) (269 aa) fasta scores: E(): 6.9, 26.54% id in 275 aa.


ensembl_gene_id: BP3484
symbol: ribB-2
gene_biotype: protein_coding
description:
  Putative 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: BP3485
symbol: ribH
gene_biotype: protein_coding
description:
  Putative 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: BP3486
symbol: nusB
gene_biotype: protein_coding
description:
  N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: BP3487
symbol: thiL
gene_biotype: protein_coding
description:
  Putative thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: BP3488
symbol: BP3488
gene_biotype: protein_coding
description:
  Putative phosphatidylglycerophosphatase; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).


ensembl_gene_id: BP3489
symbol: BP3489
gene_biotype: protein_coding
description:
  Similar to Enterobacter agglomerans hypothetical protein SW:YGAD_ENTAG (P51967) (164 aa) fasta scores: E(): 7.4e-22, 50.6% id in 166 aa, and to the C-terminal region of Streptococcus pneumoniae putative competence-damage protein CinA SW:CINA_STRPN (P54184) (418 aa) fasta scores: E(): 5.1e-08, 37.33% id in 150 aa. CDS contains extra residues at the N-terminus in comparison to orthologues.


ensembl_gene_id: BP3490
symbol: pyrF
gene_biotype: protein_coding
description:
  Similar to Thermus aquaticus orotidine 5'-phosphate decarboxylase PyrF SW:DCOP_THETH (P96076) (241 aa) fasta scores: E(): 1e-22, 39.92% id in 258 aa, and to Halobacterium salinarum orotidine-5'-monophosphate decarboxylase VNG1673G TR:Q9P9M3 (EMBL:AF187997) (267 aa) fasta scores: E(): 2.5e-36, 44.2% id in 276 aa; Belongs to the OMP decarboxylase family. Type 2 subfamily.


ensembl_gene_id: BP3491
symbol: ndh
gene_biotype: protein_coding
description:
  Similar to Escherichia coli NADH dehydrogenase Ndh SW:DHNA_ECOLI (P00393) (433 aa) fasta scores: E(): 1.6e-60, 43.18% id in 433 aa, and to Pseudomonas fluorescens NADH dehydrogenase II Ndh TR:Q9KGX0 (EMBL:AF281147) (432 aa) fasta scores: E(): 3.5e-68, 46.89% id in 435 aa.


ensembl_gene_id: BP3492
symbol: dgkA
gene_biotype: protein_coding
description:
  Putative diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: BP3493
symbol: brkB
gene_biotype: protein_coding
description:
  Similar to Bordetella pertussis serum resistance protein BrkB TR:Q45339 (EMBL:U12276) (296 aa) fasta scores: E(): 3.8e-111, 100% id in 296 aa. Similar to the N-terminal region of Rhizobium loti hypothetical protein MLL2378 TR:Q98IJ2 (EMBL:AP002999) (339 aa) fasta scores: E(): 3.1e-35, 39.28% id in 280 aa.


ensembl_gene_id: BP3494
symbol: brkA
gene_biotype: protein_coding
description:
  Serum resistance protein; Inhibits the classical pathway of complement activation and prevents accumulation of deposited C4.


ensembl_gene_id: BP3495
symbol: cpn60
gene_biotype: protein_coding
description:
  60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: BP3496
symbol: cpn10
gene_biotype: protein_coding
description:
  10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: BP3497
symbol: BP3497
gene_biotype: protein_coding
description:
  Hypothetical protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal region of Agrobacterium tumefaciens AGR_L_563p TR:AAK88851 (EMBL:AE008228) (228 aa) fasta scores: E(): 8.2e-07, 36.58% id in 82 aa. Also similar to BP3499, 40.385% identity (41.584% ungapped) in 208 aa overlap.


ensembl_gene_id: BP3498
symbol: BP3498
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Bordetella bronchiseptica arylmalonate decarboxylase SW:AMDA_BORBR (Q05115) (240 aa) fasta scores: E(): 3.9e-06, 27.31% id in 216 aa, and to Pyrococcus horikoshii hypothetical arylmalonate decarboxylase PH1150 TR:O58884 (EMBL:AP000005) (236 aa) fasta scores: E(): 5.2e-15, 30% id in 210 aa. Possible alternative translational start site.


ensembl_gene_id: BP3499
symbol: BP3499
gene_biotype: protein_coding
description:
  Hypothetical protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal region of Agrobacterium tumefaciens AGR_L_563p TR:AAK88851 (EMBL:AE008228) (228 aa) fasta scores: E(): 9.4e-05, 38.15% id in 76 aa. Also similar to BP3497, 40.385% identity (41.584% ungapped) in 208 aa overlap.


ensembl_gene_id: BP3500
symbol: BP3500
gene_biotype: protein_coding
description:
  Putative dehydrogenase; Similar to Comamonas testosteroni 3-oxosteroid 1-dehydrogenase SW:3O1D_COMTE (Q06401) (573 aa) fasta scores: E(): 6.6e-37, 30.82% id in 584 aa, and to Pseudomonas aeruginosa hypothetical protein PA2243 TR:Q9I1M6 (EMBL:AE004650) (577 aa) fasta scores: E(): 8.4e-64, 37.32% id in 568 aa.


ensembl_gene_id: BP3501
symbol: BP3501
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein SMA1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5e-38, 39.22% id in 311 aa, and to Comamonas testosteroni hypothetical protein OrfJ TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.3e-35, 36.67% id in 319 aa.


ensembl_gene_id: BP3503
symbol: BP3503
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Caulobacter crescentus isoleucine biosynthesis transcriptional activator IlvR SW:ILVR_CAUCR (P52670) (296 aa) fasta scores: E(): 1.8e-12, 27.45% id in 244 aa, and to Neisseria meningitidis putative LysR-family transcriptional regulator NMA1437 TR:Q9JRJ3 (EMBL:AL162755) (304 aa) fasta scores: E(): 4.1e-16, 27.81% id in 284 aa.


ensembl_gene_id: BP3504
symbol: BP3504
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Comamonas testosteroni 3-oxosteroid 1-dehydrogenase SW:3O1D_COMTE (Q06401) (573 aa) fasta scores: E(): 2.8e-41, 29.56% id in 575 aa, and to Pseudomonas aeruginosa hypothetical protein PA2243 TR:Q9I1M6 (EMBL:AE004650) (577 aa) fasta scores: E(): 1.2e-64, 36.15% id in 567 aa.


ensembl_gene_id: BP3506
symbol: BP3506
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Escherichia coli pyrazinamidase/nicotinamidase [includes: pyrazinamidase; nicotinamidase] PncA SW:PNCA_ECOLI (P21369) (213 aa) fasta scores: E(): 2.1e-07, 31.81% id in 198 aa, and to Pseudomonas aeruginosa hypothetical protein PA4918 TR:Q9HUP5 (EMBL:AE004905) (219 aa) fasta scores: E(): 3.9e-49, 67.35% id in 193 aa.


ensembl_gene_id: BP3507
symbol: BP3507
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Limited database matches to the full length CDS. Similar to Escherichia coli hypothetical protein YhcK TR:P77793 (EMBL:AE000246) (460 aa) fasta scores: E(): 1.2e-52, 34.74% id in 449 aa. N-terminus is similar to the N-terminal region of Rhizobium loti response regulator protein mll0859 TR:Q98LV6 (EMBL:AP002995) (408 aa) fasta scores: E(): 5.9e-20, 48.48% id in 165 aa.


ensembl_gene_id: BP3508
symbol: BP3508
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to Bacillus halodurans hypothetical protein BH3794 TR:Q9K6D5 (EMBL:AP001520) (231 aa) fasta scores: E(): 2.9e-13, 31.76% id in 170 aa, and to the C-terminal region of Thermotoga maritima conserved hypothetical protein TM1699 TR:Q9X225 (EMBL:AE001810) (558 aa) fasta scores: E(): 3.3e-23, 42.1% id in 171 aa. Possible gene remnant resulting from the insertion of the upstream IS element and subsequent recombination events.


ensembl_gene_id: BP3515
symbol: BP3515
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); (CCGCG)2 in pertussis; (CCGCG)3 in parapertussis and bronchiseptica.


ensembl_gene_id: BP3517
symbol: BP3517
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium loti hypothetical protein MLL2445 TR:Q98ID9 (EMBL:AP002999) (200 aa) fasta scores: E(): 1.6, 24.61% id in 195 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_pAT_413p TR:AAK90663 (EMBL:AE007898) (199 aa) fasta scores: E(): 2, 26.37% id in 182 aa.


ensembl_gene_id: BP3518
symbol: BP3518
gene_biotype: protein_coding
description:
  Putative phospholipase D family protein; C-terminus is similar to the C-terminal region of Bacillus firmus cardiolipin synthetase Cls SW:CLS_BACFI (O66043) (503 aa) fasta scores: E(): 7.5e-18, 33.41% id in 389 aa, and to Bacillus subtilis probable cardiolipin synthetase 1 YwiE SW:CLS1_BACSU (P45860) (500 aa) fasta scores: E(): 9.5e-19, 32.11% id in 383 aa.


ensembl_gene_id: BP3521
symbol: BP3521
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA3602 TR:Q9HY24 (EMBL:AE004780) (536 aa) fasta scores: E(): 1.1e-144, 65.1% id in 533 aa. Internal region of the CDS is similar to an internal region of Porphyra purpurea ferredoxin-dependent glutamate synthase GltB SW:GLSF_PORPU (P51375) (1538 aa) fasta scores: E(): 6.9e-22, 32.84% id in 341 aa.


ensembl_gene_id: BP3522
symbol: BP3522
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA5430 TR:Q9HTD6 (EMBL:AE004955) (404 aa) fasta scores: E(): 1.7e-89, 63.59% id in 401 aa, and to Rhizobium meliloti hypothetical protein SMB21550 TR:CAC49391 (EMBL:AL603645) (413 aa) fasta scores: E(): 1.9e-74, 52.81% id in 409 aa. Possible alternative translational start site.


ensembl_gene_id: BP3523
symbol: BP3523
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Agrobacterium tumefaciens hypothetical protein AGR_C_3303p TR:AAK87565 (EMBL:AE008100) (312 aa) fasta scores: E(): 1.2e-22, 32.81% id in 320 aa, and to Rhizobium meliloti putative malonate transporter SMC00317 SW:MDCF_RHIME (P56949) (320 aa) fasta scores: E(): 7.4e-22, 31.94% id in 313 aa.


ensembl_gene_id: BP3524
symbol: BP3524
gene_biotype: protein_coding
description:
  Putative acetyltransferase; Similar to Bacillus halodurans hypothetical protein BH1438 TR:Q9KCY1 (EMBL:AP001512) (144 aa) fasta scores: E(): 4.1e-15, 38.73% id in 142 aa, and to Pseudomonas aeruginosa probable acetyl transferase PA2631 TR:Q9I0K7 (EMBL:AE004691) (141 aa) fasta scores: E(): 9.9e-15, 40.87% id in 137 aa. Possible alternative translational start site.


ensembl_gene_id: BP3525
symbol: BP3525
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA1424 TR:Q9I3S0 (EMBL:AE004572) (203 aa) fasta scores: E(): 2.8e-39, 58.91% id in 202 aa, and to Vibrio cholerae hypothetical protein VC1980 TR:Q9KQL8 (EMBL:AE004273) (200 aa) fasta scores: E(): 1.3e-15, 34.67% id in 199 aa.


ensembl_gene_id: BP3526
symbol: rnr
gene_biotype: protein_coding
description:
  Putative ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: BP3527
symbol: rlmB
gene_biotype: protein_coding
description:
  Putative tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.


ensembl_gene_id: BP3528
symbol: BP3528
gene_biotype: protein_coding
description:
  Cys/Met metabolism PLP-dependent enzyme; Similar to Corynebacterium glutamicum cystathionine gamma-synthase MetB TR:Q9RQ97 (EMBL:AF126953) (386 aa) fasta scores: E(): 1.2e-21, 32.43% id in 407 aa, and to Clostridium acetobutylicum O-acetylhomoserine sulfhydrylase CAC0102 TR:Q97MT9 (EMBL:AE007523) (409 aa) fasta scores: E(): 8.4e-46, 32.18% id in 407 aa.


ensembl_gene_id: BP3529
symbol: BP3529
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Previously sequenced as Bordetella bronchiseptica hypothetical protein TR:Q9S3N8 (EMBL:AJ132742) (226 aa) fasta scores: E(): 2e-91, 100% id in 226 aa. Similar to Pseudomonas aeruginosa hypothetical protein PA4515 TR:Q9HVQ7 (EMBL:AE004865) (226 aa) fasta scores: E(): 3.4e-61, 66.37% id in 226 aa.


ensembl_gene_id: BP3530
symbol: hupB
gene_biotype: protein_coding
description:
  DNA-binding protein Hu-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: BP3531
symbol: tonB
gene_biotype: protein_coding
description:
  Siderophore-mediated iron transport protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: BP3532
symbol: exbB
gene_biotype: protein_coding
description:
  MotA/TolQ/ExbB proton channel family protein; C-terminal region is similar to Escherichia coli inner membrane protein that maintains integrity of cell envelope and tolerance to group A colicins TolQ SW:TOLQ_ECOLI (P05828) (230 aa) fasta scores: E(): 2.1e-13, 31.87% id in 229 aa. Previously sequenced as Bordetella pertussis putative biopolymer transport protein ExbB TR:Q9S3M5 (EMBL:AJ132741) (325 aa) fasta scores: E(): 1.2e-103, 100% id in 325 aa.


ensembl_gene_id: BP3533
symbol: exbD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli biopolymer transport protein ExbD SW:EXBD_ECOLI (P18784) (141 aa) fasta scores: E(): 2.1e-09, 31.53% id in 130 aa. Previously sequenced as Bordetella pertussis putative biopolymer transport protein ExbD TR:Q9S3M4 (EMBL:AJ132741) (155 aa) fasta scores: E(): 4.4e-53, 100% id in 155 aa.


ensembl_gene_id: BP3534
symbol: basR
gene_biotype: protein_coding
description:
  Two-component regulatory system family, response regulator protein. Similar to Salmonella typhimurium transcriptional regulatory protein TctD SW:TCTD_SALTY (P22104) (224 aa) fasta scores: E(): 1.3e-29, 43.37% id in 219 aa. Previously sequenced as Bordetella pertussis transcriptional putative regulatory protein BasR TR:Q9S3M3 (EMBL:AJ132741) (223 aa) fasta scores: E(): 3.4e-81, 100% id in 223 aa. Similar to BP2547, 53.881% identity (53.881% ungapped) in 219 aa overlap.


ensembl_gene_id: BP3535
symbol: BP3535
gene_biotype: protein_coding
description:
  Sensor kinase protein; Two-component regulatory system family, sensor kinase protein. No significant database matches to the full length CDS. C-terminus is similar to the C-terminal regions of Escherichia coli sensor protein BasS SW:BASS_ECOLI (P30844) (363 aa) fasta scores: E(): 5.4e-19, 32.29% id in 288 aa, and Rhizobium loti two-component system, sensor protein MLL7952 TR:Q984L4 (EMBL:AP003013) (452 aa) fasta scores: E(): 3.9e-28, 38.83% id in 291 aa.


ensembl_gene_id: BP3536
symbol: kup
gene_biotype: protein_coding
description:
  Putative potassium uptake protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: BP3537
symbol: argG
gene_biotype: protein_coding
description:
  Similar to Escherichia coli argininosuccinate synthase ArgG SW:ASSY_ECOLI (P22767) (446 aa) fasta scores: E(): 2.9e-140, 80.27% id in 441 aa, and to Pasteurella multocida argininosuccinate synthase PM0813 SW:ASSY_PASMU (P57877) (445 aa) fasta scores: E(): 6.4e-145, 83.48% id in 442 aa; Belongs to the argininosuccinate synthase family. Type 2 subfamily.


ensembl_gene_id: BP3538
symbol: argF
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.


ensembl_gene_id: BP3539
symbol: argD
gene_biotype: protein_coding
description:
  Similar to Corynebacterium glutamicum acetylornithine aminotransferase ArgD SW:ARGD_CORGL (Q59282) (389 aa) fasta scores: E(): 5.5e-48, 41.43% id in 391 aa, and to Rhizobium meliloti putative acetylornithine aminotransferase protein TR:CAC45089 (EMBL:AL591784) (399 aa) fasta scores: E(): 3.2e-59, 48.26% id in 375 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: BP3540
symbol: BP3540
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum hypothetical protein rsc2555 rsc2555 or rs00734 SWALL:Q8XWB9 (EMBL:AL646070) (117 aa) fasta scores: E(): 6.2e-20, 60.63% id in 94 aa.


ensembl_gene_id: BP3541
symbol: BP3541
gene_biotype: protein_coding
description:
  LysR family regulatory protein; Similar to Pseudomonas aeruginosa probable transcriptional regulator PA2877 TR:Q9HZX0 (EMBL:AE004714) (297 aa) fasta scores: E(): 1e-67, 60.46% id in 301 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA2534 TR:Q9I0V0 (EMBL:AE004681) (303 aa) fasta scores: E(): 1.2e-45, 46.1% id in 295 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3542
symbol: BP3542
gene_biotype: protein_coding
description:
  Similar to Picea abies short-chain type dehydrogenase/reductase SW:SDR1_PICAB (Q08632) (271 aa) fasta scores: E(): 2.1e-15, 31.25% id in 240 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase PA2918 TR:Q9HZS9 (EMBL:AE004718) (257 aa) fasta scores: E(): 1.8e-69, 82.57% id in 241 aa.


ensembl_gene_id: BP3543
symbol: BP3543
gene_biotype: protein_coding
description:
  Putative D-isomer specific 2-hydroxyacid dehydrogenase; Similar to Hyphomicrobium methylovorum glycerate dehydrogenase SW:DHGY_HYPME (P36234) (321 aa) fasta scores: E(): 9.8e-27, 32.29% id in 322 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_L_379p TR:AAK88759 (EMBL:AE008217) (311 aa) fasta scores: E(): 1.6e-49, 47.26% id in 311 aa; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: BP3544
symbol: BP3544
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Rhizobium meliloti hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 9.7e-43, 39.62% id in 318 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_L_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 1.6e-39, 38.8% id in 317 aa.


ensembl_gene_id: BP3545
symbol: BP3545
gene_biotype: protein_coding
description:
  Hypothetical protein; Poor database matches. Similar to C-terminal region of Comamonas testosteroni hypothetical protein Orf5 TR:Q9S154 (EMBL:AB024335) (278 aa) fasta scores: E(): 0.21, 33.33% id in 54 aa. Possible gene remnant.


ensembl_gene_id: BP3546
symbol: BP3546
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Corynebacterium glutamicum dihydrodipicolinate synthase DapA SW:DAPA_CORGL (P19808) (301 aa) fasta scores: E(): 1.8, 20.35% id in 280 aa, and to Rhizobium meliloti hypothetical protein SMB20107 TR:CAC48507 (EMBL:AL603642) (318 aa) fasta scores: E(): 2.4e-43, 41.15% id in 294 aa.


ensembl_gene_id: BP3547
symbol: BP3547
gene_biotype: protein_coding
description:
  GntR family regulatory protein; Similar to Escherichia coli pyruvate dehydrogenase complex repressor PdhR SW:PDHR_ECOLI (P06957) (254 aa) fasta scores: E(): 1.3e-13, 33.9% id in 233 aa, and to Rhizobium meliloti putative transcription regulator protein SMC04143 TR:CAC41496 (EMBL:AL591782) (240 aa) fasta scores: E(): 4.9e-37, 49.15% id in 236 aa.


ensembl_gene_id: BP3550
symbol: BP3550
gene_biotype: protein_coding
description:
  Putative transport protein (pseudogene); 12 probable transmembrane helices predicted for BP3549 by TMHMM2.0 at aa 96-115, 120-139, 152-171, 175-197, 204-226, 236-258, 279-301, 321-340, 347-369, 374-396, 409-431 and 436-458.


ensembl_gene_id: BP3551
symbol: ahpD
gene_biotype: protein_coding
description:
  Putative antioxidant protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: BP3552
symbol: ahpC
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor alkyl hydroperoxide reductase AhpC SWALL:Q9RN72 (EMBL:AF186371) (184 aa) fasta scores: E(): 9.6e-31, 51.09% id in 182 aa, and to Ralstonia solanacearum putative alkyl hydroperoxide reductase AhpC2 or rsc1646 or rs04022 SWALL:Q8XYW0 (EMBL:AL646065) (230 aa) fasta scores: E(): 2.4e-63, 85.16% id in 182 aa.


ensembl_gene_id: BP3555
symbol: BP3555
gene_biotype: protein_coding
description:
  Putative acetyltransferase; N-terminal region is similar to Pseudomonas aeruginosa hypothetical protein PA3685 TR:Q9HXV5 (EMBL:AE004788) (226 aa) fasta scores: E(): 3.2e-14, 40% id in 235 aa. C-terminal region is similar to Escherichia coli ribosomal-protein-alanine acetyltransferase RimI SW:RIMI_ECOLI (P09453) (148 aa) fasta scores: E(): 9.7e-10, 36.84% id in 133 aa. Full length CDS is similar to Mycobacterium leprae hypothetical protein ML0378 SW:YY21_MYCLE (Q49857) (359 aa) fasta scores: E(): 1.8e-05, 30.4% id in 375 aa.


ensembl_gene_id: BP3556
symbol: BP3556
gene_biotype: protein_coding
description:
  Bacteriophage-related DNA polymerase; C-terminus is similar to the C-terminal regions of Rhizobium loti MLL7705 TR:Q985F0 (EMBL:AP003012) (291 aa) fasta scores: E(): 9.6e-24, 46.66% id in 255 aa, and Treponema pallidum bacteriophage-type DNA polymerase TP0229 TR:O83257 (EMBL:AE001204) (277 aa) fasta scores: E(): 5e-23, 46.18% id in 223 aa. Possible alternative translational start site.


ensembl_gene_id: BP3557
symbol: BP3557
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Escherichia coli hypothetical protein YgeD SW:YGED_ECOLI (P39196) (397 aa) fasta scores: E(): 4.7e-21, 37.19% id in 414 aa, and to Neisseria meningitidis putative integral membrane protein NMA1715 TR:Q9JTM1 (EMBL:AL162756) (436 aa) fasta scores: E(): 2.2e-05, 23.38% id in 449 aa.


ensembl_gene_id: BP3558
symbol: smc
gene_biotype: protein_coding
description:
  Putative chromosome partition protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: BP3559
symbol: BP3559
gene_biotype: protein_coding
description:
  Putative membrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.


ensembl_gene_id: BP3560
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: BP3561
symbol: BP3561
gene_biotype: protein_coding
description:
  Putative peptidyl-prolyl cis-trans isomerase; Similar to Campylobacter jejuni cell binding factor 2 precursor Cbf2 SW:CBF2_CAMJE (Q46105) (273 aa) fasta scores: E(): 8.7e-17, 30.25% id in 271 aa, and to Rhizobium meliloti putative outer membrane protein SMC02451 TR:CAC47205 (EMBL:AL591791) (284 aa) fasta scores: E(): 3.3e-16, 31.98% id in 272 aa.


ensembl_gene_id: BP3562
symbol: BP3562
gene_biotype: protein_coding
description:
  BolA-like protein; Similar to Escherichia coli general stress response protein and possible regulator of murein genes, BolA SW:BOLA_ECOLI (P15298) (105 aa) fasta scores: E(): 0.00043, 36.84% id in 76 aa, and to Neisseria meningitidis hypothetical protein NMA2143 TR:Q9JST5 (EMBL:AL162758) (92 aa) fasta scores: E(): 1.8e-09, 43.9% id in 82 aa; Belongs to the BolA/IbaG family.


ensembl_gene_id: BP3563
symbol: BP3563
gene_biotype: protein_coding
description:
  Putative intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: BP3564
symbol: msrB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli peptide methionine sulfoxide reductase MsrB or b1778 or z2817 or ecs2487 SWALL:MSRB_ECOLI (SWALL:P39903) (137 aa) fasta scores: E(): 6.9e-26, 49.21% id in 128 aa, and to Ralstonia solanacearum peptide methionine sulfoxide reductase MsrB or rsc1747 or rs02935 SWALL:MSRB_RALSO (SWALL:Q8XYL1) (128 aa) fasta scores: E(): 5.3e-34, 67.74% id in 124 aa.


ensembl_gene_id: BP3565
symbol: BP3565
gene_biotype: protein_coding
description:
  Similar to Deinococcus radiodurans ABC transporter, ATP-binding protein DR2469 TR:Q9RRL9 (EMBL:AE002076) (226 aa) fasta scores: E(): 5.9e-39, 59.72% id in 221 aa, and to Rhizobium meliloti putative ATP-binding ABC transporter protein SMC00962 TR:CAC45462 (EMBL:AL591785) (226 aa) fasta scores: E(): 1.9e-33, 52.25% id in 222 aa.


ensembl_gene_id: BP3566
symbol: BP3566
gene_biotype: protein_coding
description:
  Putative cobalt transport protein; Similar to Deinococcus radiodurans conserved hypothetical protein DR2468 TR:Q9RRM0 (EMBL:AE002076) (198 aa) fasta scores: E(): 1.1e-21, 46.76% id in 201 aa, and to Rhizobium meliloti hypothetical transmembrane protein SMC00963 TR:CAC45461 (EMBL:AL591785) (201 aa) fasta scores: E(): 2.5e-19, 43.41% id in 205 aa.


ensembl_gene_id: BP3567
symbol: BP3567
gene_biotype: protein_coding
description:
  BioY family protein; Similar to Bacillus sphaericus biotin synthase BioY SW:BIOY_BACSH (P22819) (196 aa) fasta scores: E(): 1.1e-08, 33.51% id in 188 aa, and to Rhizobium meliloti hypothetical transmembrane protein SMC00964 TR:CAC45460 (EMBL:AL591785) (187 aa) fasta scores: E(): 2e-28, 54.64% id in 183 aa.


ensembl_gene_id: BP3568
symbol: BP3568
gene_biotype: protein_coding
description:
  Putative exported protein; N-terminus is similar to the N-terminal region of Salmonella typhimurium Leu/Ile/Val/Thr-binding protein precursor LivJ SW:LIVJ_SALTY (P17215) (365 aa) fasta scores: E(): 3.1e-06, 23.12% id in 294 aa. Full length CDS is similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, periplasmic amino acid- binding protein DRA0263 TR:Q9RYP6 (EMBL:AE001863) (424 aa) fasta scores: E(): 4.5e-83, 57.25% id in 400 aa. Similar to BP1506, 52.926% identity (53.495% ungapped) in 376 aa overlap.


ensembl_gene_id: BP3569
symbol: BP3569
gene_biotype: protein_coding
description:
  Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 2.4e-11, 27.62% id in 333 aa, and to Deinococcus radiodurans branched-chain amino acid ABC transporter, permease protein DRA0262 TR:Q9RYP7 (EMBL:AE001863) (349 aa) fasta scores: E(): 5.4e-63, 59.88% id in 344 aa.


ensembl_gene_id: BP3570
symbol: BP3570
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative branched amino acid transport system permease sco7184 or sc8a11.12 SWALL:Q9FBZ8 (EMBL:AL391041) (349 aa) fasta scores: E(): 9e-21, 32.23% id in 335 aa; Due to a large deletion following codon 519, this CDS may have resulted from the fusion of two adjacent CDSs. N-terminal region is similar to Streptomyces coelicolor putative branched amino acid transport system permease sco7184 or sc8a11.12 SWALL:Q9FBZ8 (EMBL:AL391041) (349 aa) fasta scores: E(): 9e-21, 32.23% id in 335 aa. C-terminal region is similar to Escherichia coli high-affinity branch [...]


ensembl_gene_id: BP3571
symbol: BP3571
gene_biotype: protein_coding
description:
  Putative aminotransferase; Similar to Escherichia coli branched-chain amino acid aminotransferase IlvE SW:ILVE_ECOLI (P00510) (308 aa) fasta scores: E(): 3.2e-12, 26.82% id in 287 aa, and to Rhizobium loti branched-chain amino acid aminotransferase MLR7635 TR:Q985K4 (EMBL:AP003012) (292 aa) fasta scores: E(): 9e-45, 44.64% id in 271 aa. Possible alternative upstream translational start site.


ensembl_gene_id: BP3572
symbol: BP3572
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glycine betaine-binding periplasmic protein precursor ProX SW:PROX_ECOLI (P14177) (330 aa) fasta scores: E(): 1.8e-07, 23.07% id in 338 aa, and to Rhizobium meliloti putative periplasmic binding transmembrane protein SMC02378 TR:CAC45606 (EMBL:AL591785) (332 aa) fasta scores: E(): 5.6e-37, 32.51% id in 326 aa. Also similar to BP2055, 53.012% identity (53.659% ungapped) in 332 aa overlap.


ensembl_gene_id: BP3573
symbol: BP3573
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid transport permease; Similar to Agrobacterium tumefaciens hypothetical protein AGR_L_1453p TR:AAK89305 (EMBL:AE008271) (335 aa) fasta scores: E(): 1.2e-57, 58.87% id in 321 aa, and to Rhizobium meliloti putative permease ABC transporter protein SMC03117 TR:CAC47555 (EMBL:AL591792) (330 aa) fasta scores: E(): 1.3e-56, 60.46% id in 301 aa.


ensembl_gene_id: BP3574
symbol: BP3574
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti putative permease ABC transporter protein SMC03118 TR:CAC47554 (EMBL:AL591792) (295 aa) fasta scores: E(): 5.6e-77, 72.1% id in 294 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_L_1455p TR:AAK89306 (EMBL:AE008271) (295 aa) fasta scores: E(): 1.3e-76, 71.42% id in 294 aa.


ensembl_gene_id: BP3575
symbol: BP3575
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): 0.0012, 20.4% id in 343 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_L_1462p TR:AAK89309 (EMBL:AE008271) (402 aa) fasta scores: E(): 1e-77, 51.25% id in 400 aa.


ensembl_gene_id: BP3576
symbol: BP3576
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG SW:BRAG_PSEAE (P21630) (233 aa) fasta scores: E(): 3.1e-24, 39.91% id in 233 aa, and to Rhizobium meliloti putative ATP-binding ABC transporter protein SMC03119 TR:CAC47553 (EMBL:AL591792) (233 aa) fasta scores: E(): 3.3e-50, 59.65% id in 233 aa.


ensembl_gene_id: BP3577
symbol: BP3577
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraF SW:BRAF_PSEAE (P21629) (255 aa) fasta scores: E(): 2.7e-27, 39.84% id in 256 aa, and to Rhizobium meliloti putative ATP-binding ABC transporter protein SMC03120 TR:CAC47552 (EMBL:AL591792) (262 aa) fasta scores: E(): 4.8e-45, 57.61% id in 243 aa.


ensembl_gene_id: BP3578
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: BP3579
symbol: BP3579
gene_biotype: protein_coding
description:
  Putative ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: BP3580
symbol: BP3580
gene_biotype: protein_coding
description:
  Intracellular PHB depolymerase; Similar to Alcaligenes eutrophus intracellular poly[D(-)-3-hydroxybutyrate] (PHB) depolymerase PhaZ TR:O87189 (EMBL:AB017612) (419 aa) fasta scores: E(): 1.2e-107, 64.8% id in 412 aa, and to Rhizobium meliloti hypothetical protein SMC02770 TR:CAC41411 (EMBL:AL591782) (424 aa) fasta scores: E(): 6.4e-85, 52.69% id in 408 aa.


ensembl_gene_id: BP3581
symbol: BP3581
gene_biotype: protein_coding
description:
  Similar to Azotobacter vinelandii ferredoxin--NADP reductase Fpr SW:FENR_AZOVI (Q44532) (257 aa) fasta scores: E(): 1.4e-28, 37.59% id in 258 aa, and to Pseudomonas aeruginosa probable oxidoreductase PA4615 TR:Q9HVH6 (EMBL:AE004875) (258 aa) fasta scores: E(): 9.6e-43, 46.81% id in 267 aa. Also similar to BP1606, 40.385% identity (42.276% ungapped) in 260 aa overlap.


ensembl_gene_id: BP3582
symbol: BP3582
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: BP3583
symbol: pncB
gene_biotype: protein_coding
description:
  Pututative nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.


ensembl_gene_id: BP3584
symbol: BP3584
gene_biotype: protein_coding
description:
  Similar to Haemophilus ducreyi hypothetical protein Hypo117 SW:Y117_HAEDU (O30825) (117 aa) fasta scores: E(): 3e-25, 60.17% id in 113 aa, and to Xylella fastidiosa hypothetical protein XF1711 TR:Q9PCR7 (EMBL:AE003995) (117 aa) fasta scores: E(): 6.2e-23, 59.29% id in 113 aa.


ensembl_gene_id: BP3585
symbol: BP3585
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor hypothetical protein SCF56.21 TR:Q9RD46 (EMBL:AL133424) (151 aa) fasta scores: E(): 2.6e-12, 40.47% id in 168 aa, and to Mycobacterium leprae hypothetical protein ML1525 TR:Q9CBV8 (EMBL:AL583922) (151 aa) fasta scores: E(): 4.1e-10, 38.78% id in 165 aa.


ensembl_gene_id: BP3586
symbol: BP3586
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA4030 TR:Q9HWZ7 (EMBL:AE004820) (276 aa) fasta scores: E(): 2.8e-06, 40.97% id in 266 aa, and to Escherichia coli hypothetical protein YeeI SW:YEEI_ECOLI (P76346) (265 aa) fasta scores: E(): 0.0081, 32.61% id in 279 aa; Belongs to the MtfA family.


ensembl_gene_id: BP3587
symbol: relA
gene_biotype: protein_coding
description:
  Putative GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: BP3588
symbol: BP3588
gene_biotype: protein_coding
description:
  Putative peptidase; Similar to Escherichia coli acetylornithine deacetylase ArgE SW:ARGE_ECOLI (P23908) (383 aa) fasta scores: E(): 6.6e-27, 36.87% id in 358 aa, and to Pseudomonas aeruginosa probable peptidic bond hydrolase PA5390 TR:Q9HTH4 (EMBL:AE004951) (384 aa) fasta scores: E(): 3e-69, 49.33% id in 377 aa. Similar to BP0655 (50.134% identity in 373 aa overlap).


ensembl_gene_id: BP3589
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: BP3590
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: BP3591
symbol: accD
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: BP3593
symbol: BP3593
gene_biotype: protein_coding
description:
  Putative lipoprotein (pseudogene); Pseudogene. This CDS appears to have a frameshift mutation following codon 32. Similar to Pseudomonas aeruginosa hypothetical protein Pa4661 SWALL:Q9HVD1 (EMBL:AE004880) (173 aa) fasta scores: E(): 5.3e-11, 32.18% id in 174 aa, and to Ralstonia solanacearum probable signal peptide protein Rsp1201 or Rs03145 SWALL:Q8XQM1 (EMBL:AL646083) (187 aa) fasta scores: E(): 8e-09, 30.1% id in 186 aa.


ensembl_gene_id: BP3594
symbol: metH
gene_biotype: protein_coding
description:
  5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: BP3595
symbol: BP3595
gene_biotype: protein_coding
description:
  Putative outer membrane protein; Similar to Salmonella typhimurium vitamin B12 receptor precursor BtuB SW:BTUB_SALTY (P37409) (614 aa) fasta scores: E(): 5.4e-37, 28.33% id in 614 aa, and to Pseudomonas aeruginosa probable tonb-dependent receptor PA1271 TR:Q9I473 (EMBL:AE004557) (616 aa) fasta scores: E(): 3.2e-39, 35.2% id in 625 aa.


ensembl_gene_id: BP3596
symbol: BP3596
gene_biotype: protein_coding
description:
  Periplasmic binding protein; Similar to Salmonella typhimurium cobalamin periplasmic binding protein BtuF TR:Q9ZFP9 (EMBL:AF096877) (266 aa) fasta scores: E(): 2.9e-15, 34.66% id in 251 aa, and to Vibrio cholerae hypothetical protein VC2381 TR:Q9KPI6 (EMBL:AE004308) (276 aa) fasta scores: E(): 4e-24, 38.82% id in 255 aa.


ensembl_gene_id: BP3597
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole biosynthesis protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: BP3598
symbol: thiD-2
gene_biotype: protein_coding
description:
  Similar to Escherichia coli phosphomethylpyrimidine kinase ThiD SW:THID_ECOLI (P76422) (266 aa) fasta scores: E(): 3e-44, 51.47% id in 272 aa, and to Rhizobium meliloti phosphomethylpyrimidine kinase SMB20962 TR:CAC49487 (EMBL:AF070520) (266 aa) fasta scores: E(): 2.1e-43, 52.07% id in 265 aa. CDS contains extra residues at the N-terminus in comparison to orthologues.


ensembl_gene_id: BP3599
symbol: BP3599
gene_biotype: protein_coding
description:
  Similar to Escherichia coli protein-L-isoaspartate O-methyltransferase Pcm SW:PIMT_ECOLI (P24206) (207 aa) fasta scores: E(): 2.9e-16, 39.42% id in 175 aa, and to Neisseria meningitidis protein-L-isoaspartate O-methyltransferase NMB1885 TR:Q9JXU0 (EMBL:AE002538) (218 aa) fasta scores: E(): 8e-28, 46.81% id in 220 aa.


ensembl_gene_id: BP3602
symbol: BP3602
gene_biotype: protein_coding
description:
  Putative outer membrane protein (pseudogene); Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.


ensembl_gene_id: BP3603
symbol: BP3603
gene_biotype: protein_coding
description:
  Transposase for IS1663; Similar to Neisseria meningitidis putative invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) (318 aa) fasta scores: E(): 3.3e-17, 28.165% id in 316 aa and Acinetobacter spSE19. pilin inverting protein ChnY TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): 7.4e-50, 47.205% id in 322 aa.


ensembl_gene_id: BP3604
symbol: BP3604
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Rhizobium meliloti hypothetical protein SMA0447 TR:AAK64892 (EMBL:AE007216) (373 aa) fasta scores: E(): 1.4e-29, 33.61% id in 357 aa, and to Pseudomonas aeruginosa hypothetical protein PA1625 TR:Q9I397 (EMBL:AE004590) (355 aa) fasta scores: E(): 2.7e-22, 29.22% id in 349 aa.


ensembl_gene_id: BP3605
symbol: BP3605
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Poor database matches. Weakly similar to Homo sapiens peroxisomal phytanoyl-CoA dioxygenase PHYH SW:PAHX_HUMAN (O14832) (338 aa) fasta scores: E(): 1.4e-08, 24.08% id in 245 aa, and to Caenorhabditis elegans probable phytanoyl-CoA dioxygenase ZK550.6 SW:PAHX_CAEEL (O62515) (312 aa) fasta scores: E(): 3.7e-06, 21.81% id in 243 aa.


ensembl_gene_id: BP3606
symbol: BP3606
gene_biotype: protein_coding
description:
  Similar to Escherichia coli putative potassium channel protein Kch SW:KCH_ECOLI (P31069) (417 aa) fasta scores: E(): 5.6e-43, 39.73% id in 375 aa, and to Halobacterium sp potassium channel homologue VNG1847G TR:Q9HP16 (EMBL:AE005085) (411 aa) fasta scores: E(): 2.2e-19, 29.42% id in 333 aa. Possibly truncated at the C-terminus by the insertion of the downstream IS element.


ensembl_gene_id: BP3609
symbol: rpsG
gene_biotype: protein_coding
description:
  30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: BP3610
symbol: fusA-3
gene_biotype: protein_coding
description:
  Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: BP3611
symbol: tuf
gene_biotype: protein_coding
description:
  Elongation factor Tu; Similar to Escherichia coli elongation factor Tu (EF-Tu) TufA or TufB (duplicate of TufA) SW:EFTU_ECOLI (P02990) (393 aa) fasta scores: E(): 1.1e-122, 81.47% id in 394 aa, and to Burkholderia cepacia elongation factor Tu Tuf SW:EFTU_BURCE (P33167) (396 aa) fasta scores: E(): 3.4e-139, 92.65% id in 395 aa. Identical to BP0007, 100.000% identity (100.000% ungapped) in 396 aa overlap.


ensembl_gene_id: BP3612
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: BP3613
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: BP3614
symbol: rplD
gene_biotype: protein_coding
description:
  50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.


ensembl_gene_id: BP3615
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: BP3616
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: BP3617
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: BP3618
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).


ensembl_gene_id: BP3619
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: BP3620
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: BP3621
symbol: rpmC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 50S ribosomal protein L29 RpmC SW:RL29_ECOLI (P02429) (63 aa) fasta scores: E(): 7.4e-10, 59.67% id in 62 aa, and to Neisseria meningitidis 50S ribosomal protein L29 NMA0121 SW:RL29_NEIMA (Q9JQX4) (63 aa) fasta scores: E(): 1.2e-10, 60.31% id in 63 aa; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: BP3622
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: BP3623
symbol: BP3623
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to Acidovorax sp. SA1 D-(-)-3-hydroxybutyrate oligomer hydrolase TR:Q9F1T8 (EMBL:AB044565) (291 aa) fasta scores: E(): 1.3e-65, 58.8% id in 284 aa, and to Rickettsia conorii hypothetical protein RC0617 TR:AAL03155 (EMBL:AE008622) (290 aa) fasta scores: E(): 3e-15, 27.44% id in 266 aa.


ensembl_gene_id: BP3624
symbol: BP3624
gene_biotype: protein_coding
description:
  Putative aldehyde dehydrogenase; Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD SW:GABD_ECOLI (P25526) (482 aa) fasta scores: E(): 3.4e-75, 43.12% id in 473 aa, and to Acinetobacter sp. 6-oxohexanoate dehydrogenase ChnE TR:BAB61739 (EMBL:AB006902) (477 aa) fasta scores: E(): 1.2e-117, 60.75% id in 474 aa.


ensembl_gene_id: BP3626
symbol: rplN
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: BP3627
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: BP3628
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: BP3629
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: BP3630
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: BP3631
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: BP3632
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: BP3633
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: BP3634
symbol: rpmD
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 50S ribosomal protein L30 RpmD SW:RL30_ECOLI (P02430) (58 aa) fasta scores: E(): 2e-07, 49.12% id in 57 aa, and to Streptomyces coelicolor 50S ribosomal protein L30 SCD31.45 SW:RL30_STRCO (P46789) (60 aa) fasta scores: E(): 1.1e-10, 57.14% id in 56 aa.


ensembl_gene_id: BP3635
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: BP3636
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: BP3638
symbol: rpmJ
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 50S ribosomal protein L36 RpmJ SW:RL36_ECOLI (P21194) (38 aa) fasta scores: E(): 8.8e-12, 71.05% id in 38 aa, and to Vibrio cholerae 50S ribosomal protein L36 VC2575 SW:RL36_VIBCH (P78001) (37 aa) fasta scores: E(): 1.5e-13, 83.78% id in 37 aa; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: BP3639
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: BP3640
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: BP3641
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: BP3642
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: BP3643
symbol: rplQ
gene_biotype: protein_coding
description:
  Similar to Escherichia coli 50S ribosomal protein L17 RplQ SW:RL17_ECOLI (P02416) (127 aa) fasta scores: E(): 5.3e-32, 68.5% id in 127 aa, and to Neisseria meningitidis 50S ribosomal protein L17 NMB0169 TR:Q9K1I1 (EMBL:AE002374) (122 aa) fasta scores: E(): 2.5e-35, 75.41% id in 122 aa.


ensembl_gene_id: BP3646
symbol: dsbD
gene_biotype: protein_coding
description:
  Thiol:disulfide interchange protein; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily.


ensembl_gene_id: BP3647
symbol: BP3647
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Bacillus halodurans hypothetical protein BH1741 TR:Q9KC33 (EMBL:AP001513) (306 aa) fasta scores: E(): 3.1e-22, 33.21% id in 283 aa, and to Pseudomonas aeruginosa hypothetical protein PA4287 TR:Q9HWB3 (EMBL:AE004845) (296 aa) fasta scores: E(): 2e-16, 31.59% id in 307 aa.


ensembl_gene_id: BP3648
symbol: hemB
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa delta-aminolevulinic acid dehydratase HemB or Pa5243 SW:HEM2_PSEAE (Q59643) (337 aa) fasta scores: E(): 1.2e-78, 65.15% id in 330 aa, and to Neisseria meningitidis delta-aminolevulinic acid dehydratase NMB0801 TR:Q9K025 (EMBL:AE002433) (333 aa) fasta scores: E(): 2.1e-86, 71.77% id in 326 aa; Belongs to the ALAD family.


ensembl_gene_id: BP3649
symbol: engB
gene_biotype: protein_coding
description:
  Putative GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: BP3650
symbol: BP3650
gene_biotype: protein_coding
description:
  Similar to Azotobacter vinelandii cytochrome c4 precursor CycA SW:CYC4_AZOVI (P43302) (210 aa) fasta scores: E(): 2.2e-18, 39.89% id in 193 aa, and to Pseudomonas stutzeri cytochrome c4 precursor CC4 SW:CYC4_PSEST (Q52369) (210 aa) fasta scores: E(): 9.6e-18, 37.82% id in 193 aa. Possible alternative translational start sites.


ensembl_gene_id: BP3651
symbol: BP3651
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Neisseria meningitidis putative cytochrome c-type biogenesis protein NMB1804 TR:Q9JY04 (EMBL:AE002530) (671 aa) fasta scores: E(): 3.1e-46, 37.75% id in 694 aa, and to Thiobacillus ferrooxidans putative cytochrome c-type maturation protein ResB TR:Q9ZG10 (EMBL:AF220499) (591 aa) fasta scores: E(): 2.1e-39, 31.79% id in 673 aa.


ensembl_gene_id: BP3652
symbol: BP3652
gene_biotype: protein_coding
description:
  Putative cytochrome c asssembly protein; C-terminus is similar to the C-terminal region of Chlamydomonas reinhardtii cytochrome c biogenesis protein CcsA SW:CCSA_CHLRE (P48269) (353 aa) fasta scores: E(): 1.4e-16, 32.75% id in 287 aa. Similar to Neisseria meningitidis putative cytochrome c-type biogenesis protein NMB1803 TR:Q9JY05 (EMBL:AE002530) (395 aa) fasta scores: E(): 1.3e-41, 48.81% id in 422 aa.


ensembl_gene_id: BP3653
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: BP3654
symbol: cyaY
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.


ensembl_gene_id: BP3655
symbol: BP3655
gene_biotype: protein_coding
description:
  Similar to Escherichia coli penicillin-binding protein 1A MrcA SW:PBPA_ECOLI (P02918) (850 aa) fasta scores: E(): 2.2e-84, 37.45% id in 841 aa, and to Pseudomonas aeruginosa penicillin-binding protein 1A PA5045 SW:PBPA_PSEAE (Q07806) (822 aa) fasta scores: E(): 2.6e-85, 40.69% id in 774 aa. Similar to BP0905, 67.640% identity (68.473% ungapped) in 822 aa overlap.


ensembl_gene_id: BP3656
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: BP3657
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.


ensembl_gene_id: BP3658
symbol: BP3658
gene_biotype: protein_coding
description:
  Putative phosphohydrolase; Weakly similar to Escherichia coli deoxyguanosinetriphosphate triphosphohydrolase Dgt SW:DGTP_ECOLI (P15723) (504 aa) fasta scores: E(): 0.00029, 25.37% id in 469 aa. Similar to Caulobacter crescentus putative deoxyguanosinetriphosphate triphosphohydrolase CC2008 TR:Q9A6S5 (EMBL:AE005874) (394 aa) fasta scores: E(): 4.3e-58, 49.61% id in 385 aa; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: BP3659
symbol: BP3659
gene_biotype: protein_coding
description:
  Similar to Dianthus caryophyllus glutathione S-transferase 1 Gst1 SW:GTZ1_DIACA (P28342) (221 aa) fasta scores: E(): 2.2e-07, 31.6% id in 174 aa, and to Rhizobium meliloti putative glutathione S-transferase protein TR:CAC47844 (EMBL:AL591793) (215 aa) fasta scores: E(): 1.3e-35, 50.23% id in 211 aa.


ensembl_gene_id: BP3660
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: BP3661
symbol: BP3661
gene_biotype: protein_coding
description:
  Putative transport protein; Weakly similar to Escherichia coli tetracycline resistance protein TetA SW:TCR3_ECOLI (P02981) (396 aa) fasta scores: E(): 5.4e-10, 26.78% id in 392 aa. Similar to the N-terminal region of Pseudomonas aeruginosa probable MFS transporter PA4233 TR:Q9HWG1 (EMBL:AE004840) (462 aa) fasta scores: E(): 2.2e-58, 48.07% id in 389 aa.


ensembl_gene_id: BP3662
symbol: ssb
gene_biotype: protein_coding
description:
  Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: BP3663
symbol: bfrC
gene_biotype: protein_coding
description:
  Ferric siderophore receptor; Similar to Vibrio anguillarum ferric anguibactin receptor precursor FatA SW:FATA_VIBAN (P11461) (726 aa) fasta scores: E(): 1.9e-33, 24.84% id in 664 aa, and to Pseudomonas aeruginosa probable TonB-dependent receptor protein PA1910 TR:Q9I2J4 (EMBL:AE004617) (804 aa) fasta scores: E(): 6.2e-37, 28.2% id in 741 aa. Highly similar to Bordetella bronchiseptica unidentified ferric siderophore receptor BfrC TR:P94274 (EMBL:U79564) (724 aa) fasta scores: E(): 0, 98.61% id in 724 aa.


ensembl_gene_id: BP3664
symbol: BP3664
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA4095 TR:Q9HWT3 (EMBL:AE004825) (177 aa) fasta scores: E(): 2e-14, 32.23% id in 152 aa, and to Alcaligenes sp. 2,4'-dihydroxyacetophenone dioxygenase Dad TR:Q9REI7 (EMBL:AJ133820) (176 aa) fasta scores: E(): 3.3e-12, 31.69% id in 142 aa.


ensembl_gene_id: BP3666
symbol: BP3666
gene_biotype: protein_coding
description:
  Putative aldolase (Pseudogene); ~60 bp deletion in pertussis relative to parapertussis and bronchiseptica.


ensembl_gene_id: BP3667
symbol: BP3667
gene_biotype: protein_coding
description:
  Similar to Streptomyces coelicolor putative GntR-family regulatory protein SC6F7.27c TR:Q9KZB5 (EMBL:AL353870) (261 aa) fasta scores: E(): 3e-05, 28% id in 250 aa, and to Deinococcus radiodurans GntR family transcriptional regulator DRA0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 2.3e-07, 28.38% id in 229 aa.


ensembl_gene_id: BP3668
symbol: BP3668
gene_biotype: protein_coding
description:
  Transcriptional regulator; Similar to Pseudomonas putida plasmid NAH7 transcriptional activator protein NahR SW:NAHR_PSEPU (P10183) (300 aa) fasta scores: E(): 3.5e-26, 33.09% id in 278 aa, and to Ralstonia sp. U2 plasmid pWWU2 LysR-like regulator protein NagR TR:Q9EXL7 (EMBL:AF036940) (301 aa) fasta scores: E(): 2.2e-26, 35.12% id in 279 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3669
symbol: BP3669
gene_biotype: protein_coding
description:
  Putative chlorohydrolase; Similar to Pseudomonas sp. hydroxydechloroatrazine ethylaminohydrolase AtzB SW:ATZB_PSESD (P95442) (481 aa) fasta scores: E(): 5.8e-07, 25.27% id in 463 aa, and to Agrobacterium tumefaciens N-ethylammeline chlorohydrolase AGR_L_363p TR:AAK88751 (EMBL:AE008216) (498 aa) fasta scores: E(): 2.6e-17, 33.13% id in 510 aa.


ensembl_gene_id: BP3670
symbol: BP3670
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.6e-35, 36.84% id in 323 aa, and to Comamonas testosteroni hypothetical protein OrfJ TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 3e-34, 36.19% id in 326 aa.


ensembl_gene_id: BP3671
symbol: BP3671
gene_biotype: protein_coding
description:
  Putative glycosyl transferases; Similar to Xylella fastidiosa hypothetical protein XF1470 TR:Q9PDA9 (EMBL:AE003977) (376 aa) fasta scores: E(): 4e-28, 43.31% id in 374 aa. Weak similarity to Rhizobium meliloti lipopolysaccharide core biosynthesis glycosyl transferase LpsE SW:LPSE_RHIME (Q9R9N1) (340 aa) fasta scores: E(): 1.1e-11, 29.49% id in 339 aa. Similar to BP2331, 69.315% identity (69.315% ungapped) in 365 aa overlap.


ensembl_gene_id: BP3672
symbol: BP3672
gene_biotype: protein_coding
description:
  Hypothetical protein; Poor database matches. Weakly similar to Escherichia coli hypothetical protein YrbL SW:YRBL_ECOLI (P46021) (210 aa) fasta scores: E(): 0.024, 25.88% id in 197 aa. Also similar to BP2342, 45.673% identity (47.500% ungapped) in 208 aa overlap.


ensembl_gene_id: BP3673
symbol: BP3673
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Salmonella typhimurium transcriptional activator protein MetR SW:METR_SALTY (P05984) (317 aa) fasta scores: E(): 1.9e-09, 25.67% id in 296 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores: E(): 4e-11, 27.39% id in 303 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3674
symbol: BP3674
gene_biotype: protein_coding
description:
  Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA SW:TAUA_ECOLI (Q47537) (320 aa) fasta scores: E(): 5.4e-18, 31.84% id in 292 aa, and to Rhizobium meliloti putative taurine uptake ABC transporter periplasmic solute-binding protein TR:CAC49365 (EMBL:AL603645) (339 aa) fasta scores: E(): 1.7e-17, 31.02% id in 332 aa.


ensembl_gene_id: BP3675
symbol: BP3675
gene_biotype: protein_coding
description:
  Similar to Escherichia coli taurine transport system permease protein TauC SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 3.3e-34, 37.34% id in 241 aa, and to Pseudomonas aeruginosa probable permease of ABC taurine transporter PA3936 TR:Q9HX80 (EMBL:AE004811) (272 aa) fasta scores: E(): 1e-37, 39.5% id in 243 aa.


ensembl_gene_id: BP3676
symbol: BP3676
gene_biotype: protein_coding
description:
  Similar to Escherichia coli taurine transport ATP-binding protein TauB SW:TAUB_ECOLI (Q47538) (255 aa) fasta scores: E(): 3.2e-30, 41.5% id in 253 aa, and to Rhizobium loti ATP-binding protein of ABC transporter MLL1253 TR:Q98KZ4 (EMBL:AP002997) (267 aa) fasta scores: E(): 8.4e-44, 47.65% id in 256 aa.


ensembl_gene_id: BP3677
symbol: BP3677
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA4186 TR:Q9HWJ5 (EMBL:AE004835) (439 aa) fasta scores: E(): 9.9e-53, 37.26% id in 432 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_L_1791p TR:AAK89468 (EMBL:AE008288) (468 aa) fasta scores: E(): 2.6e-27, 33.18% id in 446 aa.


ensembl_gene_id: BP3679
symbol: BP3679
gene_biotype: protein_coding
description:
  TetR-family transcriptional regulator; Similar to Streptomyces coelicolor positive regulator of secondary metabolite formation and sporulation CprA TR:O66121 (EMBL:AB000384) (215 aa) fasta scores: E(): 0.0019, 25% id in 164 aa, and to Streptomyces coelicolor putative TetR-family transcriptional regulator SCK13.32 TR:Q9AD73 (EMBL:AL512667) (200 aa) fasta scores: E(): 9.3e-12, 30.61% id in 196 aa. Possible alternative translational start sites.


ensembl_gene_id: BP3680
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: BP3682
symbol: glcC
gene_biotype: protein_coding
description:
  GntR-family transcriptional regulator (pseudogene); (A)2 in pertussis; (A)1 in parapertussis and bronchiseptica.


ensembl_gene_id: BP3683
symbol: BP3683
gene_biotype: protein_coding
description:
  Putative exported protein; No significant database matches. Similar to N-terminal region of Ralstonia solanacearum probable flagellar hook-length control protein FliK TR:CAD17546 (EMBL:AL646078) (516 aa) fasta scores: E(): 9.2, 43.59% id in 39 aa. Similar to BP0266, BP1766, BP2719, BP3090, and BP3731.


ensembl_gene_id: BP3684
symbol: ubiA
gene_biotype: protein_coding
description:
  UbiA prenyltransferase family protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: BP3685
symbol: BP3685
gene_biotype: protein_coding
description:
  Putative aminotransferase; Similar to Thermococcus litoralis alanine glyoxylate transaminase Agt TR:Q9C4M4 (EMBL:AB033996) (407 aa) fasta scores: E(): 5.7e-34, 34.76% id in 397 aa, and to Pyrococcus abyssi aminotransferase PAB2227 TR:Q9V282 (EMBL:AJ248283) (410 aa) fasta scores: E(): 5.1e-68, 47.44% id in 392 aa.


ensembl_gene_id: BP3686
symbol: BP3686
gene_biotype: protein_coding
description:
  Similar to Xylella fastidiosa hypothetical protein XF1230 TR:Q9PDZ8 (EMBL:AE003957) (162 aa) fasta scores: E(): 6.4e-38, 60.39% id in 154 aa. N-terminal region is weakly similar to N-terminus of Escherichia coli xanthosine phosphorylase XapA SW:XAPA_ECOLI (P45563) (277 aa) fasta scores: E(): 2.1, 29.32% id in 133 aa.


ensembl_gene_id: BP3687
symbol: BP3687
gene_biotype: protein_coding
description:
  Similar to Nicotiana sylvestris dihydrodipicolinate synthase DHDPS-R1 TR:Q42940 (EMBL:X79060) (308 aa) fasta scores: E(): 4e-07, 26.61% id in 263 aa, and to Neisseria meningitidis dihydrodipicolinate synthase NMA1124 SW:DAPA_NEIMA (Q9JUU9) (291 aa) fasta scores: E(): 3.2e-13, 32.39% id in 284 aa; Belongs to the DapA family.


ensembl_gene_id: BP3690
symbol: BP3690
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Weakly similar to Pseudomonas aeruginosa hypothetical protein PA0380 TR:Q9I6B5 (EMBL:AE004475) (66 aa) fasta scores: E(): 9.2e-10, 54.54% id in 66 aa, and to Caulobacter crescentus hypothetical protein CC1881 TR:Q9A745 (EMBL:AE005862) (66 aa) fasta scores: E(): 4.8e-09, 50% id in 66 aa.


ensembl_gene_id: BP3691
symbol: BP3691
gene_biotype: protein_coding
description:
  Prolyl iminopeptidase; Similar to Serratia marcescens proline iminopeptidase Pip SW:PIP_SERMA (O32449) (317 aa) fasta scores: E(): 3.1e-81, 63.34% id in 311 aa, and to Rhizobium meliloti putative proline iminopeptidase protein TR:CAC45694 (EMBL:AL591786) (316 aa) fasta scores: E(): 1.8e-86, 66.77% id in 310 aa; Belongs to the peptidase S33 family.


ensembl_gene_id: BP3692
symbol: trmB
gene_biotype: protein_coding
description:
  Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: BP3693
symbol: BP3693
gene_biotype: protein_coding
description:
  LysR family regulatoy protein; Similar to Rhodobacter capsulatus LysR-type transcriptional activator CbbRI TR:O34014 (EMBL:U87283) (298 aa) fasta scores: E(): 1.1e-17, 31.89% id in 301 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA0877 TR:Q9I568 (EMBL:AE004522) (298 aa) fasta scores: E(): 3.7e-42, 42.21% id in 289 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3695
symbol: BP3695
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); (AG)2 in pertussis; (AG)1 in parapertussis and bronchiseptica.


ensembl_gene_id: BP3696
symbol: BP3696
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.7e-36, 43.35% id in 256 aa, and to Agrobacterium tumefaciens AGR_L_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 2e-33, 39.4% id in 269 aa.


ensembl_gene_id: BP3698
symbol: BP3698
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Pseudogene); Pseudogene. This CDS lacks a stop codon. The sequence has been checked and believed to be correct. Similar to Rhizobium loti hypothetical protein MLL3526 TR:Q98G19 (EMBL:AP003002) (156 aa) fasta scores: E(): 5.6e-23, 69.23% id in 78 aa near C-terminus, and to Yersinia pestis putative transposase y0084 or ypcd1.93 TR:O68709 (EMBL:AF053946) (88 aa) fasta scores: E(): 0.04, 46.34% id in 41 aa near N-terminus.


ensembl_gene_id: BP3699
symbol: BP3699
gene_biotype: protein_coding
description:
  Weakly similar to Rhizobium loti transcriptional regulator MLL4768 TR:Q98DC1 (EMBL:AP003004) (260 aa) fasta scores: E(): 1.1e-06, 24.49% id in 245 aa, and to Agrobacterium tumefaciens AGR_L_2068p agr_l_2068 TR:AAK89608 (EMBL:AE008303) (327 aa) fasta scores: E(): 1.2e-06, 26.31% id in 228 aa. Possible alternative translational start sites. Also similar to BP3702, 45.353% identity (46.743% ungapped) in 269 aa overlap.


ensembl_gene_id: BP3700
symbol: BP3700
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.7e-37, 37.23% id in 325 aa, and to Agrobacterium tumefaciens AGR_L_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 2.9e-35, 35.86% id in 329 aa.


ensembl_gene_id: BP3701
symbol: BP3701
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Bacillus subtilis putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_BACSU (P40400) (332 aa) fasta scores: E(): 2.1e-12, 28.88% id in 270 aa, and to Rhizobium loti taurine transport system periplasmic protein MLR4517 TR:Q98DW7 (EMBL:AP003004) (337 aa) fasta scores: E(): 2.5e-10, 25.07% id in 351 aa. Also similar to BP3704, 53.666% identity (54.464% ungapped) in 341 aa overlap.


ensembl_gene_id: BP3702
symbol: BP3702
gene_biotype: protein_coding
description:
  GntR-family transcriptional regulator; Similar to Pseudomonas putida histidine utilization repressor HutC SW:HUTC_PSEPU (P22773) (248 aa) fasta scores: E(): 3.5e-06, 27.38% id in 252 aa, and to Pseudomonas syringae HutC-like protein TR:Q9AGU6 (EMBL:AF326719) (249 aa) fasta scores: E(): 2.8e-07, 26.64% id in 274 aa. Also similar to BP3699, 45.353% identity (46.743% ungapped) in 269 aa overlap.


ensembl_gene_id: BP3703
symbol: BP3703
gene_biotype: protein_coding
description:
  Similar to Escherichia coli taurine transport system permease protein TauC SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 1.9e-33, 36.32% id in 256 aa, and to Pseudomonas aeruginosa probable permease of ABC taurine transporter PA3936 TR:Q9HX80 (EMBL:AE004811) (272 aa) fasta scores: E(): 1.4e-30, 37.34% id in 241 aa.


ensembl_gene_id: BP3704
symbol: BP3704
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti taurine transport system periplasmic protein MLR4517 TR:Q98DW7 (EMBL:AP003004) (337 aa) fasta scores: E(): 7e-07, 25.44% id in 334 aa> N-terminus is similar to the N-terminal region of Bacillus subtilis putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_BACSU (P40400) (332 aa) fasta scores: E(): 1.1e-09, 28.33% id in 240 aa. Also similar to BP3701, 54.227% identity (55.689% ungapped) in 343 aa overlap.


ensembl_gene_id: BP3705
symbol: BP3705
gene_biotype: protein_coding
description:
  Similar to Escherichia coli taurine transport ATP-binding protein TauB SW:TAUB_ECOLI (Q47538) (255 aa) fasta scores: E(): 4.8e-33, 44.04% id in 252 aa, and to Rhizobium loti ATP-binding protein of ABC transporter MLL1253 TR:Q98KZ4 (EMBL:AP002997) (267 aa) fasta scores: E(): 2.1e-43, 49.07% id in 271 aa.


ensembl_gene_id: BP3706
symbol: BP3706
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase/isomerase family protein; Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase Crt SW:CRT_CLOAB (P52046) (261 aa) fasta scores: E(): 6.5e-26, 38.95% id in 249 aa, and to Thauera aromatica putative E-phenylitaconyl-CoA hydratase BbsH TR:Q9KJE7 (EMBL:AF173961) (256 aa) fasta scores: E(): 9e-28, 39.84% id in 256 aa; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: BP3707
symbol: BP3707
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Comamonas testosteroni hypothetical protein Orf4 TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 4.6e-34, 36.36% id in 319 aa, and to Rhizobium meliloti hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 8.8e-36, 36.65% id in 311 aa.


ensembl_gene_id: BP3708
symbol: BP3708
gene_biotype: protein_coding
description:
  Putative zinc-binding dehydrogenase; Similar to Caulobacter crescentus zinc-containing alcohol dehydrogenase CC0770 TR:Q9AA38 (EMBL:AE005752) (325 aa) fasta scores: E(): 8.5e-43, 43.71% id in 334 aa, and to Rhodocyclus gelatinosus hypothetical protein TR:Q9JP93 (EMBL:AB034704) (326 aa) fasta scores: E(): 1.7e-42, 42.9% id in 331 aa.


ensembl_gene_id: BP3709
symbol: BP3709
gene_biotype: protein_coding
description:
  Putative racemase; Similar to Rhodococcus sp. AD45 putative racemase IsoG TR:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): 1.1e-50, 38% id in 400 aa, and to Streptomyces coelicolor putative racemase SCF41.21 TR:Q9RJU8 (EMBL:AL117387) (403 aa) fasta scores: E(): 4.8e-41, 37.56% id in 402 aa. Similar to BP0416, 52.525% identity (53.061% ungapped) in 396 aa overlap; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP3710
symbol: BP3710
gene_biotype: protein_coding
description:
  TetR-family transcriptional regulator; Similar to Mycobacterium tuberculosis hypothetical protein MTV032.01 TR:O53641 (EMBL:AL021927) (214 aa) fasta scores: E(): 1.4e-07, 30.39% id in 204 aa, and to Streptomyces coelicolor putative TetR transcriptional regulator SCI30A.12c TR:Q9S261 (EMBL:AL096811) (251 aa) fasta scores: E(): 3.3e-05, 29.26% id in 205 aa.


ensembl_gene_id: BP3711
symbol: nudC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli NADH pyrophosphatase NudC SW:NUDC_ECOLI (P32664) (257 aa) fasta scores: E(): 2.8e-27, 46.98% id in 166 aa. Similar to Pasteurella multocida NADH pyrophosphatase PM1735 SW:NUDC_PASMU (P57965) (264 aa) fasta scores: E(): 5e-31, 39.18% id in 245 aa.


ensembl_gene_id: BP3712
symbol: BP3712
gene_biotype: protein_coding
description:
  Putative oxidoreductase; Similar to Pseudomonas pseudoalcaligenes phenoxybenzoate dioxygenase beta subunit PobB SW:POBB_PSEPS (Q52186) (319 aa) fasta scores: E(): 4.9e-32, 40.88% id in 318 aa, and to Pseudomonas sp CA10 reductase component TR:Q9AQN2 (EMBL:AB047548) (315 aa) fasta scores: E(): 2.9e-44, 49.13% id in 289 aa.


ensembl_gene_id: BP3713
symbol: BP3713
gene_biotype: protein_coding
description:
  Putative amidase; Similar to Pseudomonas putida amidase SW:AMID_PSEPU (O69768) (466 aa) fasta scores: E(): 1.1e-18, 32.71% id in 434 aa, and to Bradyrhizobium japonicum malonamidase E2 TR:Q9ZIV5 (EMBL:AF012735) (432 aa) fasta scores: E(): 1.1e-39, 39.53% id in 387 aa. Also similar toBP0130, 45.679% identity (47.804% ungapped) in 405 aa overlap.


ensembl_gene_id: BP3714
symbol: BP3714
gene_biotype: protein_coding
description:
  Putative zinc-binding dehydrogenases; No significant database matches to the full length CDS. C-terminal region is similar to an internal region of Pseudomonas aeruginosa probable oxidoreductase PA5234 TR:Q9HTV6 (EMBL:AE004936) (325 aa) fasta scores: E(): 2.8e-05, 27.45% id in 204 aa, and Pseudomonas aeruginosa probable oxidoreductase PA3256 TR:Q9HYY4 (EMBL:AE004748) (320 aa) fasta scores: E(): 9.5e-05, 26.75% id in 228 aa.


ensembl_gene_id: BP3715
symbol: BP3715
gene_biotype: protein_coding
description:
  LysR-family transcriptional regulator; Similar to Erwinia chrysanthemi hydrogen peroxide-inducible genes activator OxyR SW:OXYR_ERWCH (Q9X725) (305 aa) fasta scores: E(): 2.9e-15, 27.92% id in 308 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA0218 TR:Q9I6S0 (EMBL:AE004459) (306 aa) fasta scores: E(): 1.6e-29, 34.42% id in 305 aa; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: BP3716
symbol: BP3716
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Salmonella typhimurium Leu/Ile/Val/Thr-binding protein precursor LivJ SW:LIVJ_SALTY (P17215) (365 aa) fasta scores: E(): 6.8e-10, 24.49% id in 343 aa, and to Streptomyces coelicolor putative branched amino acid binding secreted protein SC8A11.13 TR:Q9FBZ7 (EMBL:AL391041) (396 aa) fasta scores: E(): 6.9e-25, 29.91% id in 361 aa.


ensembl_gene_id: BP3717
symbol: BP3717
gene_biotype: protein_coding
description:
  Similar to Escherichia coli hypothetical protein YlbE SW:YLBE_ECOLI (P77129) (419 aa) fasta scores: E(): 2.8e-27, 32.27% id in 409 aa, and to Streptomyces coelicolor hypothetical protein SC3F9.09 TR:O69949 (EMBL:AL023862) (363 aa) fasta scores: E(): 0.11, 29.28% id in 379 aa.


ensembl_gene_id: BP3718
symbol: BP3718
gene_biotype: protein_coding
description:
  N-terminal region is similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraF SW:BRAF_PSEAE (P21629) (255 aa) fasta scores: E(): 7.3e-23, 38.15% id in 249 aa. Full length CDS is similar to Agrobacterium tumefaciens hypothetical protein AGR_pTi_138p TR:AAK91029 (EMBL:AE007933) (528 aa) fasta scores: E(): 1.6e-23, 29.79% id in 527 aa. CDS appears to contain two similar domains, N-terminal half of the protein is similar to the C-terminal half.


ensembl_gene_id: BP3719
symbol: BP3719
gene_biotype: protein_coding
description:
  Similar to the C-terminal region of Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivM SW:LIVM_ECOLI (P22729) (425 aa) fasta scores: E(): 8.4e-09, 29.73% id in 333 aa, and to the full length Streptomyces coelicolor putative branched amino acid transport system permease SC8A11.12 TR:Q9FBZ8 (EMBL:AL391041) (349 aa) fasta scores: E(): 7.1e-26, 32.09% id in 324 aa.


ensembl_gene_id: BP3720
symbol: BP3720
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease protein BraD SW:BRAD_PSEAE (P21627) (307 aa) fasta scores: E(): 1.3e-18, 34.88% id in 301 aa, and to Streptomyces coelicolor putative branched amino acid transport system permease SC8A11.11 TR:Q9FBZ9 (EMBL:AL391041) (290 aa) fasta scores: E(): 4.4e-34, 40.78% id in 282 aa.


ensembl_gene_id: BP3722
symbol: BP3722
gene_biotype: protein_coding
description:
  Iron-sulphur protein; N-terminal region is similar to Pseudomonas pseudoalcaligenes phenoxybenzoate dioxygenase alpha subunit PobA SW:POBA_PSEPS (Q52185) (409 aa) fasta scores: E(): 6.4e-32, 36.9% id in 401 aa, and Pseudomonas putida phthalate 4,5-dioxygenase oxygenase subunit Pht3 SW:PHT3_PSEPU (Q05183) (439 aa) fasta scores: E(): 1.5e-24, 31.07% id in 399 aa.


ensembl_gene_id: BP3724
symbol: BP3724
gene_biotype: protein_coding
description:
  Similar to Agrobacterium tumefaciens conserved hypothetical protein AGR_L_1509p TR:AAK89332 (EMBL:AE008274) (315 aa) fasta scores: E(): 1.8e-71, 60.81% id in 319 aa, and to Rhizobium loti hypothetical protein MLL5836 TR:Q98AV6 (EMBL:AP003007) (319 aa) fasta scores: E(): 8.1e-71, 63.15% id in 304 aa.


ensembl_gene_id: BP3725
symbol: nadC
gene_biotype: protein_coding
description:
  Similar to Mycobacterium tuberculosis nicotinate-nucleotide pyrophosphorylase [carboxylating] NadC SW:NADC_MYCTU (O06594) (285 aa) fasta scores: E(): 1.6e-36, 50.18% id in 267 aa, and to Rhizobium loti nicotinate-mononucleotide pyrophosphorylase MLL9102 TR:Q982F4 (EMBL:AP003015) (284 aa) fasta scores: E(): 2.4e-68, 71.11% id in 277 aa. Possible alternative translational start site; Belongs to the NadC/ModD family.


ensembl_gene_id: BP3727
symbol: BP3727
gene_biotype: protein_coding
description:
  Putative glycosyl transferases; Weakly similar to Rhizobium meliloti lipopolysaccharide core biosynthesis glycosyl transferase LpsD SW:LPSD_RHIME (Q9R9N0) (343 aa) fasta scores: E(): 0.0003, 23.14% id in 363 aa, and to Rhizobium meliloti putative glycosyltransferase protein SMB21242 TR:CAC49146 (EMBL:AL603644) (374 aa) fasta scores: E(): 3.9e-10, 27.92% id in 351 aa.


ensembl_gene_id: BP3728
symbol: rkpK
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti udp-glucose 6-dehydrogenase RkpK SW:UDG_RHIME (O54068) (437 aa) fasta scores: E(): 1e-76, 48.19% id in 442 aa, and to Burkholderia pseudomallei putative UDP-glucose dehydrogenase Udg TR:Q9WWX8 (EMBL:AF159428) (466 aa) fasta scores: E(): 8.3e-108, 63.07% id in 455 aa.


ensembl_gene_id: BP3729
symbol: BP3729
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Streptomyces coelicolor methylenomycin A resistance protein Mmr SW:MMR_STRCO (P11545) (475 aa) fasta scores: E(): 1e-23, 28.69% id in 453 aa, and to Escherichia coli hypothetical transport protein YebQ SW:YEBQ_ECOLI (P76269) (457 aa) fasta scores: E(): 6.1e-68, 44.69% id in 443 aa.


ensembl_gene_id: BP3730
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine synthesis bifunctional protein; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: BP3731
symbol: BP3731
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum hypothetical protein rsc0305 rsc0305 or rs03272 SWALL:Q8Y2N0 (EMBL:AL646058) (294 aa) fasta scores: E(): 4e-07, 39.76% id in 259 aa.


ensembl_gene_id: BP3732
symbol: BP3732
gene_biotype: protein_coding
description:
  Putative exported protein; C-terminus is weakly similar to the C-terminal region of Salmonella typhimurium outer membrane lipoprotein precursor SlyB SW:SLYB_SALTY (Q53549) (155 aa) fasta scores: E(): 0.00012, 40% id in 105 aa, and to the full length Escherichia coli hypothetical protein YcfJ SW:YCFJ_ECOLI (P37796) (179 aa) fasta scores: E(): 1.3e-05, 31.48% id in 162 aa.


ensembl_gene_id: BP3733
symbol: BP3733
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum hypothetical protein Rsc3357 or Rs02632 SWALL:Q8XU37 (EMBL:AL646074) (75 aa) fasta scores: E(): 6.7e-14, 61.19% id in 67 aa.


ensembl_gene_id: BP3734
symbol: BP3734
gene_biotype: protein_coding
description:
  SCO1/SenC family protein; Similar to Caulobacter crescentus SCO1/2 family protein CC3503 TR:Q9A2Q3 (EMBL:AE006008) (190 aa) fasta scores: E(): 3.9e-28, 50% id in 170 aa, and to Rhizobium meliloti putative cytochrome c oxidase assembly factor transmembrane protein TR:CAC46733 (EMBL:AL591789) (199 aa) fasta scores: E(): 3e-20, 38.37% id in 172 aa.


ensembl_gene_id: BP3735
symbol: ctaB
gene_biotype: protein_coding
description:
  UbiA prenyltransferase family protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: BP3736
symbol: BP3736
gene_biotype: protein_coding
description:
  Putative cytochrome oxidase assembly protein; Similar to Pseudomonas aeruginosa hypothetical protein PA0112 TR:Q9I720 (EMBL:AE004449) (357 aa) fasta scores: E(): 5.1e-44, 44% id in 325 aa, and to Xylella fastidiosa hypothetical protein XF1359 TR:Q9PDM0 (EMBL:AE003967) (387 aa) fasta scores: E(): 2.6e-27, 33.77% id in 382 aa.


ensembl_gene_id: BP3737
symbol: BP3737
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Pseudomonas stutzeri hypothetical protein SW:YAPT_PSEST (P47206) (193 aa) fasta scores: E(): 0.061, 28.57% id in 182 aa, and to Pseudomonas aeruginosa hypothetical protein PA0111 TR:Q9I721 (EMBL:AE004449) (192 aa) fasta scores: E(): 3.2e-05, 27.88% id in 208 aa.


ensembl_gene_id: BP3738
symbol: BP3738
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to the C-terminal regions of Streptomyces coelicolor putative membrane protein SCI8.14 TR:Q9RJ39 (EMBL:AL132644) (290 aa) fasta scores: E(): 2.5e-06, 30.31% id in 254 aa, and Schizosaccharomyces pombe putative surf-family protein SPBC1215.01 TR:Q9Y810 (EMBL:AL096846) (290 aa) fasta scores: E(): 1.6e-05, 24.38% id in 242 aa. Possible alternative translational start sites.


ensembl_gene_id: BP3739
symbol: BP3739
gene_biotype: protein_coding
description:
  Putative membrane protein; Poor database matches. Similar to Pseudomonas aeruginosa hypothetical protein PA0109 TR:Q9I723 (EMBL:AE004449) (69 aa) fasta scores: E(): 0.0016, 35.48% id in 62 aa.


ensembl_gene_id: BP3740
symbol: coIII
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa cytochrome c oxidase, subunit III PA0108 TR:Q9I724 (EMBL:AE004449) (295 aa) fasta scores: E(): 1.4e-52, 50.34% id in 288 aa, and to Dinornis giganteus cytochrome c oxidase subunit III TR:Q9B6W4 (EMBL:AY016013) (261 aa) fasta scores: E(): 1.4e-27, 40.42% id in 282 aa.


ensembl_gene_id: BP3742
symbol: BP3742
gene_biotype: protein_coding
description:
  Putative membrane protein; Poor database matches. Similar to Rhizobium meliloti hypothetical transmembrane protein SMC00130 TR:CAC45479 (EMBL:AL591785) (46 aa) fasta scores: E(): 7.9, 44.82% id in 29 aa, and to Paracoccus denitrificans cox locus hypothetical protein 2 SW:YCO2_PARDE (P08302) (89 aa) fasta scores: E(): 8.7, 46.42% id in 28 aa.


ensembl_gene_id: BP3743
symbol: ctaD
gene_biotype: protein_coding
description:
  Cytochrome c oxidase polypeptide I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: BP3744
symbol: BP3744
gene_biotype: protein_coding
description:
  Putative bifunctional protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: BP3745
symbol: BP3745
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to the N-terminal region of Schizosaccharomyces pombe thiamine pyrophosphokinase TNR3 SW:TNR3_SCHPO (P41888) (569 aa) fasta scores: E(): 2.8e-05, 23.9% id in 251 aa, and to the full length Neisseria meningitidis hypothetical protein NMA0394 TR:Q9JWF6 (EMBL:AL162753) (291 aa) fasta scores: E(): 7.8e-16, 32.63% id in 239 aa.


ensembl_gene_id: BP3746
symbol: BP3746
gene_biotype: protein_coding
description:
  Putative sodium/hydrogen exchanger family; N-terminus is similar to the N-terminal region of Oncorhynchus mykiss sodium-hydrogen exchange protein-beta SW:NAHB_ONCMY (Q01345) (759 aa) fasta scores: E(): 2.6e-22, 25.95% id in 447 aa, and to the full length Synechocystis sp. eukaryotic Na+/H+ exchanger SLR1727 TR:P73863 (EMBL:D90910) (527 aa) fasta scores: E(): 9e-32, 29.15% id in 511 aa. C-terminal region conatains a cyclic nucleotide-binding domain.


ensembl_gene_id: BP3747
symbol: cpdA-2
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: BP3748
symbol: rpoH
gene_biotype: protein_coding
description:
  RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: BP3749
symbol: BP3749
gene_biotype: protein_coding
description:
  Putative membrane protein; Poor database matches. Similar to Pseudomonas aeruginosa hypothetical protein PA1825 TR:Q9I2S0 (EMBL:AE004609) (214 aa) fasta scores: E(): 1.1e-07, 28.64% id in 199 aa.


ensembl_gene_id: BP3751
symbol: adhI
gene_biotype: protein_coding
description:
  Similar to Rhodobacter sphaeroides alcohol dehydrogenase class III AdhI SW:ADHI_RHOSH (P72324) (376 aa) fasta scores: E(): 3.6e-113, 75.79% id in 376 aa, and to Anabaena azollae glutathione dependent formaldehyde dehydrogenase GDFALDH TR:O24687 (EMBL:U89767) (369 aa) fasta scores: E(): 5.2e-112, 75.33% id in 369 aa; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.


ensembl_gene_id: BP3752
symbol: BP3752
gene_biotype: protein_coding
description:
  Similar to Ralstonia solanacearum hypothetical protein Rsc2966 or Rs01331 SWALL:Q8XV65 (EMBL:AL646072) (241 aa) fasta scores: E(): 1.6e-25, 40.16% id in 249 aa, and to Rhizobium loti hypothetical protein MLL6832 TR:Q988A1 (EMBL:AP003010) (220 aa) fasta scores: E(): 7.7e-07, 30.3% id in 231 aa, and to Caulobacter crescentus hypothetical protein CC1445 TR:Q9A8A9 (EMBL:AE005819) (221 aa) fasta scores: E(): 0.00026, 25.53% id in 235 aa.


ensembl_gene_id: BP3753
symbol: gltB
gene_biotype: protein_coding
description:
  Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB SW:GLTB_ECOLI (P09831) (1517 aa) fasta scores: E(): 8.3e-106, 44.45% id in 1597 aa, and to Deinococcus radiodurans glutamate synthase, large subunit DR0183 TR:Q9RXX2 (EMBL:AE001880) (1615 aa) fasta scores: E(): 0, 70.42% id in 1579 aa.


ensembl_gene_id: BP3754
symbol: GltD
gene_biotype: protein_coding
description:
  Similar to Azospirillum brasilense glutamate synthase [NADPH] small chain gltD SW:GLTD_AZOBR (Q05756) (480 aa) fasta scores: E(): 2.1e-35, 38.58% id in 482 aa, and to the C-terminal region of Medicago sativa NADH-glutamate synthase, chloroplast precursor SW:GLSN_MEDSA (Q03460) (2194 aa) fasta scores: E(): 2.5e-84, 50.1% id in 493 aa.


ensembl_gene_id: BP3755
symbol: BP3755
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae outer membrane protein OmpW SW:OMPW_VIBCH (P17266) (217 aa) fasta scores: E(): 2.3e-18, 44.6% id in 213 aa, and to Escherichia coli outer membrane protein OmpW SW:OMPW_ECOLI (P21364) (212 aa) fasta scores: E(): 6.9e-32, 46.6% id in 206 aa.


ensembl_gene_id: BP3756
symbol: BP3756
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.5e-48, 42.18% id in 320 aa, and to Pseudomonas chlororaphis hypothetical protein TR:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta scores: E(): 3.1e-45, 42.94% id in 312 aa.


ensembl_gene_id: BP3757
symbol: BP3757
gene_biotype: protein_coding
description:
  Similar to Vibrio cholerae ABC transporter, ATP-binding protein VC2520 TR:Q9KP56 (EMBL:AE004321) (267 aa) fasta scores: E(): 4.6e-41, 51.16% id in 258 aa, and to Neisseria meningitidis ABC transporter, ATP-binding protein NMB1966 TR:Q9JXN0 (EMBL:AE002544) (266 aa) fasta scores: E(): 2.4e-40, 51.4% id in 249 aa.


ensembl_gene_id: BP3758
symbol: BP3758
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas putida toluene tolerance protein Ttg2B TR:Q9Z401 (EMBL:AF106002) (265 aa) fasta scores: E(): 6.1e-45, 57.02% id in 242 aa, and to Pasteurella multocida hypothetical protein PM0175 TR:Q9CP79 (EMBL:AE006052) (261 aa) fasta scores: E(): 2.6e-48, 60.9% id in 243 aa.


ensembl_gene_id: BP3759
symbol: BP3759
gene_biotype: protein_coding
description:
  Mce related protein; Similar to Pseudomonas putida toluene tolerance protein Ttg2C TR:Q9Z400 (EMBL:AF106002) (161 aa) fasta scores: E(): 4.7e-22, 46.54% id in 159 aa, and to Neisseria meningitidis putative outer membrane transport protein NMA0487 TR:Q9JR43 (EMBL:AL162753) (164 aa) fasta scores: E(): 3.3e-28, 53.04% id in 164 aa.


ensembl_gene_id: BP3760
symbol: BP3760
gene_biotype: protein_coding
description:
  Similar to Shigella flexneri lipoprotein required for intercellular spreading, VacJ SW:VACJ_SHIFL (P43262) (251 aa) fasta scores: E(): 2e-22, 35.77% id in 246 aa, and to Pseudomonas aeruginosa hypothetical protein PA2800 TR:Q9I043 (EMBL:AE004707) (234 aa) fasta scores: E(): 1.7e-27, 40.26% id in 231 aa.


ensembl_gene_id: BP3761
symbol: BP3761
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Neisseria meningitidis putative periplasmic transport protein NMA0488 TR:Q9JW92 (EMBL:AL162753) (196 aa) fasta scores: E(): 4.3e-16, 33.82% id in 204 aa, and to Escherichia coli hypothetical protein YrbC SW:YRBC_ECOLI (P45390) (211 aa) fasta scores: E(): 1.8e-12, 29.41% id in 204 aa.


ensembl_gene_id: BP3764
symbol: BP3764
gene_biotype: protein_coding
description:
  Probable ATP-binding ABC transporter protein (pseudogene); (C)8 in pertussis; (C)6 in parapertussis and bronchiseptica.


ensembl_gene_id: BP3765
symbol: BP3765
gene_biotype: protein_coding
description:
  BolA-like protein; Similar to Escherichia coli putative general stress response and morphology regulator BolA SW:BOLA_ECOLI (P15298) (105 aa) fasta scores: E(): 0.00069, 38.46% id in 52 aa, and to Neisseria meningitidis hypothetical protein NMA0256 TR:Q9JWS9 (EMBL:AL162752) (82 aa) fasta scores: E(): 3.3e-10, 52.63% id in 76 aa; Belongs to the BolA/IbaG family.


ensembl_gene_id: BP3766
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: BP3767
symbol: hisG
gene_biotype: protein_coding
description:
  Putative ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: BP3768
symbol: hisD
gene_biotype: protein_coding
description:
  Putative histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: BP3769
symbol: hisC
gene_biotype: protein_coding
description:
  Similar to Escherichia coli histidinol-phosphate aminotransferase HisC SW:HIS8_ECOLI (P06986) (356 aa) fasta scores: E(): 2.3e-20, 31.4% id in 363 aa, and to Neisseria meningitidis histidinol-phosphate aminotransferase NMA1771 TR:Q9JTH8 (EMBL:AL162757) (365 aa) fasta scores: E(): 3.7e-48, 40.84% id in 355 aa; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: BP3770
symbol: hisB
gene_biotype: protein_coding
description:
  Imidazoleglycerol-phosphate dehydratase; Similar to C-terminal region of Escherichia coli histidine biosynthesis bifunctional protein hisB [includes: histidinol-phosphatase and imidazoleglycerolphosphate dehydratase] HisB SW:HIS7_ECOLI (P06987) (355 aa) fasta scores: E(): 3.6e-32, 50% id in 194 aa, and to the full length Pseudomonas aeruginosa imidazoleglycerol-phosphate dehydratase PA5143 TR:Q9HU41 (EMBL:AE004927) (197 aa) fasta scores: E(): 1.7e-56, 74.74% id in 194 aa.


ensembl_gene_id: BP3771
symbol: hisH
gene_biotype: protein_coding
description:
  Amidotransferase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: BP3772
symbol: hisA
gene_biotype: protein_coding
description:
  Histidine biosynthesis protein; Similar to Escherichia coli phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA SW:HIS4_ECOLI (P10371) (245 aa) fasta scores: E(): 6.9e-21, 33.87% id in 245 aa, and to Neisseria meningitidis putative phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase NMA0839 TR:Q9JVH4 (EMBL:AL162754) (245 aa) fasta scores: E(): 1.3e-62, 69.26% id in 244 aa.


ensembl_gene_id: BP3773
symbol: hisF
gene_biotype: protein_coding
description:
  Histidine biosynthesis protein; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: BP3774
symbol: hisI
gene_biotype: protein_coding
description:
  Putative phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: BP3775
symbol: hisE
gene_biotype: protein_coding
description:
  phosphoribosyl-ATP pyrophosphohydrolase; Similar to the C-terminal region of Escherichia coli histidine biosynthesis bifunctional protein [includes: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphatase] HisI SW:HIS2_ECOLI (P06989) (203 aa) fasta scores: E(): 0.0074, 32.22% id in 90 aa, and to the full length Neisseria meningitidis putative phosphoribosyl-ATP cyclohydrolase NMA0807 TR:Q9JVJ9 (EMBL:AL162754) (107 aa) fasta scores: E(): 9.6e-18, 53.77% id in 106 aa.


ensembl_gene_id: BP3776
symbol: BP3776
gene_biotype: protein_coding
description:
  MttA/Hcf106 family protein; Similar to Homo sapiens protein kinase C interacting protein 1, PKCI-1 SW:HINT_HUMAN (P49773) (125 aa) fasta scores: E(): 3.1e-16, 44.86% id in 107 aa, and to Neisseria gonorrhoeae histidine triad containing protein HitA SW:HITA_NEIGO (O07817) (107 aa) fasta scores: E(): 6.5e-18, 52.29% id in 109 aa.


ensembl_gene_id: BP3777
symbol: tatE
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: BP3778
symbol: tatB
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: BP3779
symbol: tatC
gene_biotype: protein_coding
description:
  Putative Sec-independent protein translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: BP3783
symbol: ptxA
gene_biotype: protein_coding
description:
  Pertussis toxin subunit 1 precursor; S1 is an NAD-dependent ADP-ribosyltransferase, which plays a crucial role in the pathogenesis of B.pertussis causing disruption of normal host cellular regulation. It catalyzes the ADP-ribosylation of a cysteine in the alpha subunit of host heterotrimeric G proteins. In the absence of G proteins it also catalyzes the cleavage of NAD(+) into ADP-ribose and nicotinamide. It irreversibly uncouples the G-alpha GTP- binding proteins from their membrane receptors.


ensembl_gene_id: BP3784
symbol: ptxB
gene_biotype: protein_coding
description:
  Pertussis toxin subunit 2 precursor; PTX oligomer B binds to receptors on the eukaryotic cell surface and facilitates the translocation of the toxic subunit across the cell membrane.


ensembl_gene_id: BP3785
symbol: ptxD
gene_biotype: protein_coding
description:
  Pertussis toxin subunit 4 precursor; PTX oligomer B binds to receptors on the eukaryotic cell surface and facilitates the translocation of the toxic subunit across the cell membrane.


ensembl_gene_id: BP3786
symbol: ptxE
gene_biotype: protein_coding
description:
  Pertussis toxin subunit 5 precursor; PTX oligomer B binds to receptors on the eukaryotic cell surface and facilitates the translocation of the toxic subunit across the cell membrane.


ensembl_gene_id: BP3787
symbol: ptxC
gene_biotype: protein_coding
description:
  Pertussis toxin subunit 3 precursor; PTX oligomer B binds to receptors on the eukaryotic cell surface and facilitates the translocation of the toxic subunit across the cell membrane.


ensembl_gene_id: BP3788
symbol: ptlA
gene_biotype: protein_coding
description:
  Pertussis toxin transport protein; Component of the type IV secretion system ptl required for secretion of assembled pertussis toxin (PTX) through the outer membrane.


ensembl_gene_id: BP3790
symbol: ptlC
gene_biotype: protein_coding
description:
  Putative bacterial secretion system protein; Component of the type IV secretion system ptl essential for secretion of assembled pertussis toxin (PTX) through the outer membrane.


ensembl_gene_id: BP3791
symbol: ptlD
gene_biotype: protein_coding
description:
  Putative membrane protein; Component of the type IV secretion system ptl required for secretion of assembled pertussis toxin (PTX) through the outer membrane.


ensembl_gene_id: BP3792
symbol: ptlI
gene_biotype: protein_coding
description:
  Putative bacterial secretion system protein; Component of the type IV secretion system ptl required for secretion of assembled pertussis toxin (PTX) through the outer membrane.


ensembl_gene_id: BP3793
symbol: ptlE
gene_biotype: protein_coding
description:
  Putative bacterial secretion system protein; Component of the type IV secretion system ptl required for secretion of assembled pertussis toxin (PTX) through the outer membrane. Could possess peptidoglycanase activity.


ensembl_gene_id: BP3794
symbol: ptlF
gene_biotype: protein_coding
description:
  Putative bacterial secretion system protein; Component of the type IV secretion system ptl required for secretion of assembled pertussis toxin (PTX) through the outer membrane; Belongs to the TrbG/VirB9 family.


ensembl_gene_id: BP3797
symbol: BP3797
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Escherichia coli probable amino acid metabolite efflux pump EamA SW:EAMA_ECOLI (P31125) (299 aa) fasta scores: E(): 2.9e-09, 27.39% id in 303 aa, and to Pseudomonas aeruginosa hypothetical protein PA3897 TR:Q9HXB6 (EMBL:AE004807) (300 aa) fasta scores: E(): 9.8e-78, 73.44% id in 290 aa.


ensembl_gene_id: BP3798
symbol: BP3798
gene_biotype: protein_coding
description:
  AraC family regulatory protein; Similar to Pseudomonas aeruginosa probable transcriptional regulator PA3898 TR:Q9HXB5 (EMBL:AE004807) (293 aa) fasta scores: E(): 1.4e-56, 53.1% id in 290 aa, and to Pantoea citrea regulatory protein GdhBR TR:Q9Z676 (EMBL:AF102513) (288 aa) fasta scores: E(): 2.5e-29, 36.95% id in 276 aa.


ensembl_gene_id: BP3799
symbol: BP3799
gene_biotype: protein_coding
description:
  Similar to Rhizobium meliloti hypothetical protein SMC03833 TR:CAC47795 (EMBL:AL591793) (125 aa) fasta scores: E(): 8.8e-09, 40.18% id in 107 aa, and to Rhizobium loti hypothetical protein MLR4351 TR:Q98E91 (EMBL:AP003003) (120 aa) fasta scores: E(): 1.6e-07, 39.78% id in 93 aa.


ensembl_gene_id: BP3800
symbol: BP3800
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA0345 TR:Q9I6E8 (EMBL:AE004472) (461 aa) fasta scores: E(): 1.1e-68, 49.78% id in 460 aa, and to Neisseria meningitidis putative integral membrane protein NMA1899 TR:Q9JTB3 (EMBL:AL162757) (449 aa) fasta scores: E(): 9.2e-20, 31.6% id in 443 aa.


ensembl_gene_id: BP3801
symbol: BP3801
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa hypothetical protein PA0344 TR:Q9I6E9 (EMBL:AE004472) (459 aa) fasta scores: E(): 6.6e-91, 58.07% id in 458 aa, and to Neisseria meningitidis hypothetical protein NMB1644 TR:Q9JYD1 (EMBL:AE002515) (446 aa) fasta scores: E(): 5.1e-40, 39.78% id in 465 aa.


ensembl_gene_id: BP3802
symbol: BP3802
gene_biotype: protein_coding
description:
  Putative extracellular solute-binding protein; Similar to Rhodobacter sphaeroides f. sp. denitrificans dipeptide transport protein DppA TR:Q9F1X4 (EMBL:AB036425) (533 aa) fasta scores: E(): 7.6e-14, 28.18% id in 550 aa, and to Rhizobium meliloti putative peptide-binding periplasmic ABC transporter protein SMC02417 TR:CAC47172 (EMBL:AL591791) (520 aa) fasta scores: E(): 1.3e-53, 37.81% id in 521 aa.


ensembl_gene_id: BP3803
symbol: BP3803
gene_biotype: protein_coding
description:
  Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): 3.4e-37, 38% id in 321 aa, and to Agrobacterium tumefaciens AGR_L_368p TR:AAK88754 (EMBL:AE008216) (332 aa) fasta scores: E(): 6.1e-73, 59.69% id in 325 aa. Similar to BP3236, 70.533% identity (70.533% ungapped) in 319 aa overlap.


ensembl_gene_id: BP3804
symbol: BP3804
gene_biotype: protein_coding
description:
  Similar to Escherichia coli dipeptide transport system permease protein DppC SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 6.7e-20, 39.79% id in 294 aa, and to Agrobacterium tumefaciens AGR_L_366p TR:AAK88753 (EMBL:AE008216) (315 aa) fasta scores: E(): 1.3e-63, 56% id in 300 aa.


ensembl_gene_id: BP3806
symbol: BP3806
gene_biotype: protein_coding
description:
  N-terminal region of a probable ABC transporter, ATP-binding protein (Pseudogene); ScanRegExp hit to PS00017, ATP/GTP-binding site motif A (P-loop).


ensembl_gene_id: BP3807
symbol: argJ
gene_biotype: protein_coding
description:
  Arginine biosynthesis bifunctional protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: BP3808
symbol: BP3808
gene_biotype: protein_coding
description:
  Similar to Neisseria meningitidis hypothetical protein NMA1415 TR:Q9JUA7 (EMBL:AL162755) (287 aa) fasta scores: E(): 6.7e-54, 56.38% id in 282 aa, and to Pseudomonas aeruginosa hypothetical protein PA2823 TR:Q9I020 (EMBL:AE004709) (296 aa) fasta scores: E(): 1.3e-48, 50% id in 288 aa.


ensembl_gene_id: BP3809
symbol: BP3809
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; N-terminus is similar to Proteus vulgaris mutator protein MutT SW:MUTT_PROVU (P32090) (112 aa) fasta scores: E(): 6.6e-08, 43.15% id in 95 aa, and to Xylella fastidiosa bifunctional dGTP-pyrophosphohydrolase/thiamine phosphate synthase XF1120 TR:Q9PEA8 (EMBL:AE003948) (320 aa) fasta scores: E(): 3.5e-29, 38.75% id in 320 aa; Belongs to the Nudix hydrolase family.


ensembl_gene_id: BP3812
symbol: BP3812
gene_biotype: protein_coding
description:
  Similar to Pseudomonas aeruginosa outer membrane protein precursor OprM SW:OPRM_PSEAE (Q51487) (485 aa) fasta scores: E(): 2.1e-35, 32.58% id in 488 aa, and to Pseudomonas aeruginosa probable outer membrane lipoprotein precursor PA2525 TR:Q9I0V8 (EMBL:AE004680) (498 aa) fasta scores: E(): 2e-79, 57.41% id in 479 aa.


ensembl_gene_id: BP3813
symbol: BP3813
gene_biotype: protein_coding
description:
  AcrB/AcrD/AcrF family protein; Similar to Escherichia coli hypothetical protein YegO SW:YEGO_ECOLI (P76399) (1025 aa) fasta scores: E(): 0, 60.8% id in 1023 aa, and to Pseudomonas aeruginosa probable RND efflux transporter PA2526 TR:Q9I0V7 (EMBL:AE004680) (1036 aa) fasta scores: E(): 0, 61.08% id in 1033 aa. Similar to BP3814, 50.193% identity (51.590% ungapped) in 1034 aa overlap; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: BP3814
symbol: BP3814
gene_biotype: protein_coding
description:
  AcrB/AcrD/AcrF family protein; Similar to Pseudomonas aeruginosa probable RND efflux transporter PA1436 TR:Q9I3R1 (EMBL:AE004573) (1036 aa) fasta scores: E(): 1.2e-171, 50.49% id in 1016 aa, and to Rhizobium loti RND efflux transporter MLL5779 TR:Q98B06 (EMBL:AP003007) (1038 aa) fasta scores: E(): 2.3e-168, 52.25% id in 1020 aa. Similar to BP3813, 50.193% identity (51.590% ungapped) in 1034 aa overlap; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: BP3815
symbol: BP3815
gene_biotype: protein_coding
description:
  HlyD family secretion protein; Similar to Pseudomonas aeruginosa probable RND efflux membrane fusion protein precursor PA2528 TR:Q9I0V5 (EMBL:AE004680) (426 aa) fasta scores: E(): 1.6e-64, 51.74% id in 402 aa, and to Burkholderia solanacearum putative resistance transmembrane protein RSP1197 TR:CAD18348 (EMBL:AL646083) (449 aa) fasta scores: E(): 1.6e-69, 51.71% id in 408 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: BP3816
symbol: zapD
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.


ensembl_gene_id: BP3817
symbol: coaE
gene_biotype: protein_coding
description:
  Putative dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: BP3818
symbol: BP3818
gene_biotype: protein_coding
description:
  Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.


ensembl_gene_id: BP3819
symbol: BP3819
gene_biotype: protein_coding
description:
  Hypothetical protein; Poor database matches. Weakly similar to Vibrio cholerae lipoprotein VC1962 TR:Q9KQN6 (EMBL:AE004271) (163 aa) fasta scores: E(): 0.065, 28.36% id in 141 aa.


ensembl_gene_id: BP3820
symbol: BP3820
gene_biotype: protein_coding
description:
  Putative regulatory protein; Similar to the C-terminal regions of Salmonella typhimurium transcriptional regulatory protein UhpA SW:UHPA_SALTY (P27667) (196 aa) fasta scores: E(): 2.6e-05, 47.29% id in 74 aa, and Escherichia coli transcriptional regulatory protein UhpA SW:UHPA_ECOLI (P10940) (196 aa) fasta scores: E(): 6.3e-05, 45.94% id in 74 aa.


ensembl_gene_id: BP3821
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: BP3822
symbol: BP3822
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: BP3823
symbol: BP3823
gene_biotype: protein_coding
description:
  Similar to Burkholderia solanacearum conserved hypothetical protein RSC2385 TR:CAD16092 (EMBL:AL646069) (62 aa) fasta scores: E(): 3.7e-09, 58.33% id in 60 aa, and to Neisseria meningitidis hypothetical protein NMA1654 TR:Q9JTS3 (EMBL:AL162756) (61 aa) fasta scores: E(): 6e-06, 44.06% id in 59 aa.


ensembl_gene_id: BP3824
symbol: BP3824
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Escherichia coli multidrug resistance protein B EmrB SW:EMRB_ECOLI (P27304) (512 aa) fasta scores: E(): 1.5e-26, 28.46% id in 411 aa, and to Rhizobium loti probable transporter MLL1728 TR:Q98JY3 (EMBL:AP002998) (477 aa) fasta scores: E(): 1.7e-75, 46.96% id in 477 aa. Possible alternative translational start site; Belongs to the major facilitator superfamily.


ensembl_gene_id: BP3825
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: BP3826
symbol: BP3826
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA0661 TR:Q9I5R0 (EMBL:AE004501) (140 aa) fasta scores: E(): 1.7e-05, 31.46% id in 143 aa, and to Rhizobium loti hypothetical protein MLL4486 TR:Q98DY7 (EMBL:AP003004) (162 aa) fasta scores: E(): 2.2e-05, 31.91% id in 141 aa. Possible alternative translational start site.


ensembl_gene_id: BP3827
symbol: BP3827
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Rhizobium meliloti hypothetical protein SMA1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.7e-48, 44.61% id in 334 aa, and to Agrobacterium tumefaciens AGR_L_312p TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): 2.2e-45, 43.28% id in 335 aa.


ensembl_gene_id: BP3828
symbol: BP3828
gene_biotype: protein_coding
description:
  Similar to Rhizobium leguminosarum general L-amino acid transport ATP-binding protein AapP SW:AAPP_RHILV (Q52815) (257 aa) fasta scores: E(): 1.7e-67, 77.95% id in 245 aa, and to Pseudomonas marginalis pv. alfalfae hypothetical protein TR:O68330 (EMBL:AF033673) (254 aa) fasta scores: E(): 2.9e-69, 80.32% id in 244 aa.. Similar to several B. pertussis CDSs: BP1181, BP0054, BP1534, BP1855, BP1575, BP1362, P0768, and BP1510.


ensembl_gene_id: BP3829
symbol: BP3829
gene_biotype: protein_coding
description:
  Similar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapM SW:AAPM_RHILV (Q52814) (384 aa) fasta scores: E(): 1.8e-59, 49.32% id in 369 aa, and to Pseudomonas marginalis pv. alfalfae hypothetical protein TR:O68329 (EMBL:AF033673) (365 aa) fasta scores: E(): 1.7e-71, 53.26% id in 368 aa.


ensembl_gene_id: BP3830
symbol: BP3830
gene_biotype: protein_coding
description:
  Similar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapQ SW:AAPQ_RHILV (Q52813) (400 aa) fasta scores: E(): 5.1e-67, 50.52% id in 378 aa, and to Vibrio cholerae amino acid ABC transporter, permease protein VC1361 TR:Q9KS98 (EMBL:AE004215) (401 aa) fasta scores: E(): 9.4e-70, 49.75% id in 402 aa.


ensembl_gene_id: BP3831
symbol: BP3831
gene_biotype: protein_coding
description:
  Similar to Rhizobium leguminosarum general L-amino acid-binding periplasmic protein precursor AapJ SW:AAPJ_RHILV (Q52812) (341 aa) fasta scores: E(): 1.1e-74, 55.75% id in 339 aa, and to Vibrio cholerae amino acid ABC transporter periplasmic amino acid-binding protein VC1362 TR:Q9KS97 (EMBL:AE004216) (342 aa) fasta scores: E(): 4.7e-79, 58.63% id in 336 aa. Similar to BP1529, 67.059% identity (67.456% ungapped) in 340 aa overlap, and to BP0558, 66.471% identity (67.262% ungapped) in 340 aa overlap; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: BP3832
symbol: ftsE
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cell division ATP-binding protein FtsE SW:FTSE_ECOLI (P10115) (222 aa) fasta scores: E(): 9e-36, 50.9% id in 220 aa, and to Neisseria meningitidis ABC transporter ATP-binding protein NMA0254 TR:Q9JWT1 (EMBL:AL162752) (216 aa) fasta scores: E(): 1.6e-34, 48.83% id in 215 aa.


ensembl_gene_id: BP3833
symbol: BP3833
gene_biotype: protein_coding
description:
  Putative permease protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: BP3834
symbol: cheD
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: BP3836
symbol: mutY
gene_biotype: protein_coding
description:
  Putative pyruvate ferredoxin/flavodoxin oxidoreductase (pseudogene); Adenine glycosylase active on G-A mispairs.


ensembl_gene_id: BP3837
symbol: BP3837
gene_biotype: protein_coding
description:
  Similar to Rhizobium loti hypothetical protein MLL1636 TR:Q98K51 (EMBL:AP002997) (290 aa) fasta scores: E(): 5.6e-33, 36.12% id in 263 aa, and to Streptomyces coelicolor putative DNA-binding protein 2SCK31.04c TR:Q9ADL0 (EMBL:AL451182) (291 aa) fasta scores: E(): 4.5e-31, 42.58% id in 263 aa. Possible alternative translational start site.


ensembl_gene_id: BP3838
symbol: BP3838
gene_biotype: protein_coding
description:
  ubiE/COQ5 methyltransferase family protein; Similar to Erwinia herbicola biotin synthesis protein BioC SW:BIOC_ERWHE (O06898) (251 aa) fasta scores: E(): 9.1e-07, 31.4% id in 207 aa. C-terminal region is similar to Pseudomonas aeruginosa hypothetical protein PA3119 TR:O87011 (EMBL:U93274) (187 aa) fasta scores: E(): 1.1e-39, 62.08% id in 182 aa.


ensembl_gene_id: BP3841
symbol: BP3841
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (pseudogene); HMMPfam hit to PF02515, CAIB/BAIF family; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP3842
symbol: BP3842
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to Salmonella typhimurium 2-methylcitrate dehydratase PrpD SW:PRPD_SALTY (P74840) (483 aa) fasta scores: E(): 1.3e-07, 24.77% id in 436 aa, and to Agrobacterium tumefaciens AGR_L_2924p TR:AAK90029 (EMBL:AE008346) (448 aa) fasta scores: E(): 4e-23, 27.89% id in 441 aa.


ensembl_gene_id: BP3843
symbol: BP3843
gene_biotype: protein_coding
description:
  Putative lipoprotein; Similar to Comamonas testosteroni hypothetical protein Orf4 TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 1.6e-32, 35.87% id in 315 aa, and to Pseudomonas putida hypothetical protein SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 1.5e-28, 34.7% id in 317 aa.


ensembl_gene_id: BP3844
symbol: BP3844
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase/isomerase; Similar to Archaeoglobus fulgidus enoyl-CoA hydratase AF0963 TR:O29299 (EMBL:AE001038) (259 aa) fasta scores: E(): 1.4e-25, 36.51% id in 241 aa, and to Bacillus subtilis putative hydroxybutyryl-dehydratase FenO TR:Q9L7W1 (EMBL:AF218939) (260 aa) fasta scores: E(): 1.6e-25, 35.84% id in 265 aa; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: BP3845
symbol: BP3845
gene_biotype: protein_coding
description:
  Nitroreductase family protein; Similar to Burkholderia solanacearum probable oxidoreductase protein RSC1608 TR:CAD15310 (EMBL:AL646065) (235 aa) fasta scores: E(): 1.5e-35, 44.73% id in 228 aa, and to Rhizobium loti nitroreductase MLL1278 TR:Q98KX3 (EMBL:AP002997) (234 aa) fasta scores: E(): 9.1e-33, 44.14% id in 222 aa.


ensembl_gene_id: BP3846
symbol: BP3846
gene_biotype: protein_coding
description:
  Similar to Mycobacterium tuberculosis CDC1551 TetR family transcriptional regulator MT2581 TR:AAK46885 (EMBL:AE007094) (231 aa) fasta scores: E(): 1.1e-05, 28.77% id in 212 aa, and to Pseudomonas fluorescens putative transcriptional regulator Pfi2 TR:Q9RFR4 (EMBL:AF173683) (207 aa) fasta scores: E(): 3.7e-10, 27.58% id in 203 aa.


ensembl_gene_id: BP3847
symbol: BP3847
gene_biotype: protein_coding
description:
  Similar to Homo sapiens mitochondrial hydroxymethylglutaryl-CoA lyase precursor HMGCL SW:HMGL_HUMAN (P35914) (325 aa) fasta scores: E(): 4.7e-18, 35.94% id in 306 aa, and to Pseudomonas mevalonii hydroxymethylglutaryl-CoA lyase MvaB SW:HMGL_PSEMV (P13703) (301 aa) fasta scores: E(): 7.2e-17, 36.03% id in 308 aa.


ensembl_gene_id: BP3848
symbol: BP3848
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase/isomerase; Similar to Mus musculus AU-binding enoyl-CoA hydratase AUH TR:Q9JLZ3 (EMBL:AF118386) (314 aa) fasta scores: E(): 4.3e-15, 30.15% id in 262 aa, and to Mycobacterium tuberculosis hypothetical protein MTCY08D5.17 TR:P96404 (EMBL:Z92669) (262 aa) fasta scores: E(): 4.3e-23, 39.6% id in 250 aa.


ensembl_gene_id: BP3849
symbol: BP3849
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Agrobacterium tumefaciens AGR_C_3858p TR:AAK87874 (EMBL:AE008129) (419 aa) fasta scores: E(): 8.2e-40, 34.09% id in 393 aa, and to Rhizobium meliloti putative conserved membrane-anchored protein SMB21182 TR:CAC49248 (EMBL:AL603645) (394 aa) fasta scores: E(): 1.5e-37, 33.58% id in 396 aa. Possible alternative translational start site; Belongs to the CoA-transferase III family.


ensembl_gene_id: BP3852
symbol: katA
gene_biotype: protein_coding
description:
  Catalase; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide.


ensembl_gene_id: BP3853
symbol: BP3853
gene_biotype: protein_coding
description:
  ABC transporter permease protein; Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC SW:SSUC_ECOLI (P75851) (263 aa) fasta scores: E(): 2.5e-17, 29.48% id in 251 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter PA2307 TR:Q9I1G8 (EMBL:AE004657) (288 aa) fasta scores: E(): 1.1e-78, 74.46% id in 282 aa.


ensembl_gene_id: BP3854
symbol: BP3854
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Similar to Klebsiella pneumoniae nitrate transport protein NasD SW:NASD_KLEPN (P39459) (262 aa) fasta scores: E(): 2.4e-27, 42.15% id in 223 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter PA2308 TR:Q9I1G7 (EMBL:AE004657) (282 aa) fasta scores: E(): 4.8e-62, 72.76% id in 257 aa.


ensembl_gene_id: BP3855
symbol: BP3855
gene_biotype: protein_coding
description:
  Putative periplasmic protein; Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA SW:TAUA_ECOLI (Q47537) (320 aa) fasta scores: E(): 7.6, 23.31% id in 296 aa, and to Pseudomonas aeruginosa hypothetical protein PA2309 TR:Q9I1G6 (EMBL:AE004657) (340 aa) fasta scores: E(): 2.5e-86, 67.75% id in 338 aa.


ensembl_gene_id: BP3856
symbol: BP3856
gene_biotype: protein_coding
description:
  Similar to Escherichia coli alpha-ketoglutarate-dependent taurine dioxygenase TauD SW:TAUD_ECOLI (P37610) (282 aa) fasta scores: E(): 4.2e-34, 40.2% id in 291 aa, and to Pseudomonas aeruginosa hypothetical protein PA2310 TR:Q9I1G5 (EMBL:AE004657) (295 aa) fasta scores: E(): 1.6e-84, 69.36% id in 297 aa. Possible alternative translational start site.


ensembl_gene_id: BP3857
symbol: BP3857
gene_biotype: protein_coding
description:
  Putative hydrolase; Similar to Campylobacter jejuni hippurate hydrolase HipO SW:HIPO_CAMJE (P45493) (383 aa) fasta scores: E(): 9.4e-51, 42.17% id in 396 aa, and to Pseudomonas aeruginosa probable hydrolase PA4344 TR:Q9HW57 (EMBL:AE004850) (406 aa) fasta scores: E(): 2e-72, 52.15% id in 395 aa. Similar to BP2810, 57.179% identity (57.614% ungapped) in 397 aa overlap, and to BP3036, 50.000% identity (51.813% ungapped) in 400 aa overlap.


ensembl_gene_id: BP3858
symbol: BP3858
gene_biotype: protein_coding
description:
  Similar to Bacillus subtilis oligopeptide transport ATP-binding protein AppF SW:APPF_BACSU (P42065) (329 aa) fasta scores: E(): 6.9e-50, 51.86% id in 295 aa, and to Agrobacterium tumefaciens AGR_pAT_367p TR:AAK90631 (EMBL:AE007895) (329 aa) fasta scores: E(): 1.5e-64, 59.07% id in 325 aa. Similar to the C-terminal region of BP3297, 60.927% identity (61.130% ungapped) in 302 aa overlap; Belongs to the ABC transporter superfamily.


ensembl_gene_id: BP3859
symbol: BP3859
gene_biotype: protein_coding
description:
  Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD SW:OPPD_SALTY (P04285) (335 aa) fasta scores: E(): 1.8e-49, 47.44% id in 333 aa, and to Agrobacterium tumefaciens AGR_pAT_366p TR:AAK90630 (EMBL:AE007895) (324 aa) fasta scores: E(): 8.3e-63, 59.81% id in 316 aa. Similar to the N-terminal region of BP3297, 63.273% identity (63.273% ungapped) in 275 aa overlap; Belongs to the ABC transporter superfamily.


ensembl_gene_id: BP3860
symbol: BP3860
gene_biotype: protein_coding
description:
  Similar to Escherichia coli dipeptide transport system permease protein DppC SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 5.4e-40, 40.33% id in 295 aa, and to Agrobacterium tumefaciens AGR_pAT_365p TR:AAK90629 (EMBL:AE007895) (318 aa) fasta scores: E(): 2.4e-61, 57.24% id in 283 aa. Similar to BP3298, 60.000% identity (60.417% ungapped) in 290 aa overlap.


ensembl_gene_id: BP3861
symbol: BP3861
gene_biotype: protein_coding
description:
  Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): 1.6e-38, 37.18% id in 320 aa, and to Agrobacterium tumefaciens AGR_pAT_363p TR:AAK90628 (EMBL:AE007895) (323 aa) fasta scores: E(): 1.5e-65, 51.58% id in 316 aa. Similar to BP3299, 54.430% identity (54.430% ungapped) in 316 aa overlap.


ensembl_gene_id: BP3862
symbol: BP3862
gene_biotype: protein_coding
description:
  Putative extracellular solute-binding protein; Similar to Escherichia coli nickel-binding periplasmic protein precursor NikA SW:NIKA_ECOLI (P33590) (524 aa) fasta scores: E(): 1.2e-24, 26.8% id in 526 aa, and to Rhizobium meliloti putative oligopeptidemurein peptide ABC transporter periplasmic solute-binding protein SMB21037 TR:CAC49009 (EMBL:AL603644) (531 aa) fasta scores: E(): 5.8e-55, 37.34% id in 498 aa.


ensembl_gene_id: BP3863
symbol: trmE
gene_biotype: protein_coding
description:
  Putative tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: BP3864
symbol: BP3864
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to an internal region of Rattus norvegicus monocarboxylate transporter 4 MCT4 SW:MOT4_RAT (O35910) (471 aa) fasta scores: E(): 0.002, 24.23% id in 425 aa, and to the full length Pseudomonas aeruginosa hypothetical protein PA2589 TR:Q9I0P8 (EMBL:AE004687) (404 aa) fasta scores: E(): 4.2e-07, 26.05% id in 403 aa. Possible alternative translational start site.


ensembl_gene_id: BP3865
symbol: BP3865
gene_biotype: protein_coding
description:
  Two-component regulatory system family, response regulator protein. Similar to Salmonella typhimurium transcriptional regulatory protein TctD SW:TCTD_SALTY (P22104) (224 aa) fasta scores: E(): 2.4e-35, 48.18% id in 220 aa, and to Rhizobium loti two-component response regulator MLL7953 TR:Q984L3 (EMBL:AP003013) (223 aa) fasta scores: E(): 2.4e-34, 47.96% id in 221 aa. Similar to BP3350, 53.302% identity (53.555% ungapped) in 212 aa overlap, and to BP2547, 50.455% identity (50.685% ungapped) in 220 aa overlap.


ensembl_gene_id: BP3866
symbol: BP3866
gene_biotype: protein_coding
description:
  Two-component regulatory system family, sensor kinase protein. Similar to Burkholderia solanacearum putative transmembrane sensor kinase transcription regulator protein RSC2936 TR:CAD16643 (EMBL:AL646072) (500 aa) fasta scores: E(): 2e-59, 45.27% id in 466 aa, and to Pseudomonas aeruginosa probable two-component sensor PA0757 TR:Q9I5H2 (EMBL:AE004510) (460 aa) fasta scores: E(): 2.8e-41, 36.2% id in 453 aa.


ensembl_gene_id: BP3867
symbol: BP3867
gene_biotype: protein_coding
description:
  Putative exported protein; Similar to Salmonella enterica hypothetical protein TctC TR:Q9FA46 (EMBL:AF020810) (325 aa) fasta scores: E(): 3.2e-76, 63.93% id in 305 aa, and to Pseudomonas aeruginosa hypothetical protein PA0754 TR:Q9I5H5 (EMBL:AE004510) (327 aa) fasta scores: E(): 2e-73, 58.84% id in 328 aa.


ensembl_gene_id: BP3868
symbol: BP3868
gene_biotype: protein_coding
description:
  Putative membrane protein; Similar to Salmonella enterica hypothetical protein TctB TR:Q9FA45 (EMBL:AF020810) (144 aa) fasta scores: E(): 2.2e-15, 37.14% id in 140 aa, and to Pseudomonas aeruginosa hypothetical protein PA0753 TR:Q9I5H6 (EMBL:AE004510) (156 aa) fasta scores: E(): 7.7e-11, 31.54% id in 149 aa. Possible alternative translational start site.


ensembl_gene_id: BP3869
symbol: BP3869
gene_biotype: protein_coding
description:
  Putative tricarboxylic transport membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA0752 TR:Q9I5H7 (EMBL:AE004510) (505 aa) fasta scores: E(): 1.9e-113, 62.72% id in 499 aa, and to Salmonella enterica hypothetical protein TctA TR:Q9FA44 (EMBL:AF020810) (504 aa) fasta scores: E(): 6.9e-112, 60.56% id in 497 aa.


ensembl_gene_id: BP3870
symbol: BP3870
gene_biotype: protein_coding
description:
  Similar to aminotransferases from prokaryotes and eukaryotes, for example, Rattus norvegicus multifunctional aminotransferase TR:Q08415 (EMBL:Z49696) (457 aa) fasta scores: E(): 1.6e-32, 33.09% id in 411 aa, and to Thermus aquaticus aspartate aminotransferase AspC SW:AAT_THETH (Q56232) (385 aa) fasta scores: E(): 2.8e-29, 33.33% id in 366 aa.


ensembl_gene_id: BP3871
symbol: BP3871
gene_biotype: protein_coding
description:
  Similar to Escherichia coli cold shock-like protein CspC SW:CSPC_ECOLI (P36996) (68 aa) fasta scores: E(): 1.1e-14, 62.9% id in 62 aa, and to Salmonella typhimurium cold shock protein CspA SW:CSPA_SALTY (P37410) (69 aa) fasta scores: E(): 1.1e-14, 64.06% id in 64 aa. Similar to BP1770, 60.606% identity (60.606% ungapped) in 66 aa overlap, BP2757, 62.295% identity (62.295% ungapped) in 61 aa overlap, BP1772, 59.677% identity (59.677% ungapped) in 62 aa overlap, and to BP0426, 54.545% identity (54.545% ungapped) in 66 aa overlap.


