# geneInfo

ensembl_gene_id: JNB_00020
symbol: JNB_00020
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: JNB_00025
symbol: JNB_00025
gene_biotype: protein_coding
description:
  COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: JNB_00030
symbol: JNB_00030
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: JNB_00135
symbol: plsY
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: JNB_00180
symbol: lexA
gene_biotype: protein_coding
description:
  LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: JNB_00230
symbol: nrdR
gene_biotype: protein_coding
description:
  Hypothetical protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: JNB_00235
symbol: JNB_00235
gene_biotype: protein_coding
description:
  Ribonucleotide-diphosphate reductase alpha subunit; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: JNB_00275
symbol: JNB_00275
gene_biotype: protein_coding
description:
  Modification methylase (Cytosine-specific methyltransferase); COG0270 Site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: JNB_00340
symbol: JNB_00340
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.


ensembl_gene_id: JNB_00375
symbol: JNB_00375
gene_biotype: protein_coding
description:
  Putative two-component system response regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_00385
symbol: JNB_00385
gene_biotype: protein_coding
description:
  Possible alkyldihydroxyacetonephospate synthase; COG0277 FAD/FMN-containing dehydrogenases; alkyl-dhapsynthase; alkylglycerone-phosphate synthase.


ensembl_gene_id: JNB_00450
symbol: JNB_00450
gene_biotype: protein_coding
description:
  Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: JNB_00460
symbol: JNB_00460
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: JNB_00465
symbol: JNB_00465
gene_biotype: protein_coding
description:
  RocD1; COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: JNB_00570
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: JNB_00580
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: JNB_00590
symbol: JNB_00590
gene_biotype: protein_coding
description:
  Putative membrane protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).


ensembl_gene_id: JNB_00605
symbol: rsmH
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: JNB_00620
symbol: murE
gene_biotype: protein_coding
description:
  Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: JNB_00625
symbol: murF
gene_biotype: protein_coding
description:
  Putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: JNB_00630
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: JNB_00635
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: JNB_00645
symbol: murG
gene_biotype: protein_coding
description:
  N-acetylglucosaminyl transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: JNB_00660
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: JNB_00670
symbol: JNB_00670
gene_biotype: protein_coding
description:
  Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: JNB_00675
symbol: sepF
gene_biotype: protein_coding
description:
  Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: JNB_00695
symbol: lspA
gene_biotype: protein_coding
description:
  Putative signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: JNB_00700
symbol: JNB_00700
gene_biotype: protein_coding
description:
  Putative ribosomal large subunit pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: JNB_00735
symbol: JNB_00735
gene_biotype: protein_coding
description:
  Amidinotransferase family protein; COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain.


ensembl_gene_id: JNB_00740
symbol: mtnA
gene_biotype: protein_coding
description:
  Putative initiation factor eIF-2B alpha subunit; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: JNB_00745
symbol: JNB_00745
gene_biotype: protein_coding
description:
  L-fuculose phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.


ensembl_gene_id: JNB_00890
symbol: JNB_00890
gene_biotype: protein_coding
description:
  Chromosome segregation ATPase; COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.


ensembl_gene_id: JNB_00910
symbol: JNB_00910
gene_biotype: protein_coding
description:
  Regulatory protein; COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: JNB_00920
symbol: JNB_00920
gene_biotype: protein_coding
description:
  Putative IstB-like ATP-binding protein; COG1484 DNA replication protein; Belongs to the DnaA family.


ensembl_gene_id: JNB_00950
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl pyrophosphate phosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: JNB_00990
symbol: JNB_00990
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators.


ensembl_gene_id: JNB_00995
symbol: JNB_00995
gene_biotype: protein_coding
description:
  Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.


ensembl_gene_id: JNB_01075
symbol: JNB_01075
gene_biotype: protein_coding
description:
  Putative two component response regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_01110
symbol: JNB_01110
gene_biotype: protein_coding
description:
  Possible conserved membrane protein; COG0053 Predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: JNB_01235
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: JNB_01245
symbol: lipB-2
gene_biotype: protein_coding
description:
  Putative lipoate-protein ligase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: JNB_01265
symbol: JNB_01265
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; Belongs to the peptidase S51 family.


ensembl_gene_id: JNB_01270
symbol: JNB_01270
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: JNB_01300
symbol: JNB_01300
gene_biotype: protein_coding
description:
  Putative NAD dependent epimerase/dehydratase family protein; COG1090 Predicted nucleoside-diphosphate sugar epimerase.


ensembl_gene_id: JNB_01305
symbol: JNB_01305
gene_biotype: protein_coding
description:
  Dihydrolipoamide acetyltransferase; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.


ensembl_gene_id: JNB_01310
symbol: JNB_01310
gene_biotype: protein_coding
description:
  COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: JNB_01330
symbol: pepA
gene_biotype: protein_coding
description:
  Putative leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: JNB_01360
symbol: JNB_01360
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: JNB_01375
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: JNB_01395
symbol: JNB_01395
gene_biotype: protein_coding
description:
  Putative 2',3'-cyclic-nucleotide 2'-phosphodiesterase; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: JNB_01415
symbol: aat
gene_biotype: protein_coding
description:
  Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: JNB_01420
symbol: JNB_01420
gene_biotype: protein_coding
description:
  COG0425 Predicted redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: JNB_01425
symbol: JNB_01425
gene_biotype: protein_coding
description:
  Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.


ensembl_gene_id: JNB_01435
symbol: JNB_01435
gene_biotype: protein_coding
description:
  Cytochrome C oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: JNB_01440
symbol: JNB_01440
gene_biotype: protein_coding
description:
  Putative membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.


ensembl_gene_id: JNB_01455
symbol: JNB_01455
gene_biotype: protein_coding
description:
  COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.


ensembl_gene_id: JNB_01490
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: JNB_01570
symbol: JNB_01570
gene_biotype: protein_coding
description:
  Putative two-component system regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_01575
symbol: JNB_01575
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxyphosphoheptonate aldolase; COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; Belongs to the class-II DAHP synthase family.


ensembl_gene_id: JNB_01655
symbol: JNB_01655
gene_biotype: protein_coding
description:
  Putative polyprenyl synthase / dimethylallyltranstransferase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: JNB_01660
symbol: JNB_01660
gene_biotype: protein_coding
description:
  COG0685 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: JNB_01680
symbol: JNB_01680
gene_biotype: protein_coding
description:
  COG0587 DNA polymerase III, alpha subunit; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.


ensembl_gene_id: JNB_01700
symbol: dinB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: JNB_01720
symbol: JNB_01720
gene_biotype: protein_coding
description:
  DNA gyrase subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.


ensembl_gene_id: JNB_01730
symbol: JNB_01730
gene_biotype: protein_coding
description:
  Transcriptional regulator involved in degradation (LacI family protein); COG1609 Transcriptional regulators.


ensembl_gene_id: JNB_01785
symbol: hemH-2
gene_biotype: protein_coding
description:
  Putative ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: JNB_01790
symbol: JNB_01790
gene_biotype: protein_coding
description:
  Putative myo-inositol 1-monophosphatase; COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family.


ensembl_gene_id: JNB_01800
symbol: JNB_01800
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.


ensembl_gene_id: JNB_01835
symbol: JNB_01835
gene_biotype: protein_coding
description:
  COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: JNB_01890
symbol: JNB_01890
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase, C-terminal:Siroheme synthase,N-terminal; COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).


ensembl_gene_id: JNB_01900
symbol: JNB_01900
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: JNB_01905
symbol: JNB_01905
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase subunit 2; COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes.


ensembl_gene_id: JNB_01910
symbol: JNB_01910
gene_biotype: protein_coding
description:
  Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: JNB_01915
symbol: JNB_01915
gene_biotype: protein_coding
description:
  Putative ferredoxin-nitrite reductase; COG0155 Sulfite reductase, beta subunit (hemoprotein); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: JNB_01930
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: JNB_01960
symbol: JNB_01960
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.


ensembl_gene_id: JNB_01970
symbol: JNB_01970
gene_biotype: protein_coding
description:
  COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: JNB_01975
symbol: JNB_01975
gene_biotype: protein_coding
description:
  COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: JNB_01980
symbol: JNB_01980
gene_biotype: protein_coding
description:
  Putative 3-hydroxybutyrate dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: JNB_02020
symbol: hemE
gene_biotype: protein_coding
description:
  Putative uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: JNB_02030
symbol: JNB_02030
gene_biotype: protein_coding
description:
  Putative protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.


ensembl_gene_id: JNB_02040
symbol: JNB_02040
gene_biotype: protein_coding
description:
  Putative oxidoreductase; COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase.


ensembl_gene_id: JNB_02055
symbol: JNB_02055
gene_biotype: protein_coding
description:
  Putative proton transport protein; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: JNB_02060
symbol: JNB_02060
gene_biotype: protein_coding
description:
  Putative monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: JNB_02085
symbol: JNB_02085
gene_biotype: protein_coding
description:
  D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: JNB_02105
symbol: JNB_02105
gene_biotype: protein_coding
description:
  Pyruvate phosphate dikinase; COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: JNB_02125
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: JNB_02145
symbol: JNB_02145
gene_biotype: protein_coding
description:
  Putative two-component system response transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_02220
symbol: JNB_02220
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: JNB_02230
symbol: JNB_02230
gene_biotype: protein_coding
description:
  Probable transmembrane transport protein; COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: JNB_02235
symbol: JNB_02235
gene_biotype: protein_coding
description:
  Probable transmembrane transport protein; COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: JNB_02245
symbol: JNB_02245
gene_biotype: protein_coding
description:
  Putative acetyl-coa acyltransferase protein; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: JNB_02265
symbol: kdpA
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase A subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: JNB_02270
symbol: kdpB
gene_biotype: protein_coding
description:
  Putative high-affinity potassium transport system; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: JNB_02275
symbol: kdpC
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: JNB_02285
symbol: JNB_02285
gene_biotype: protein_coding
description:
  Putative two-component system response regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_02295
symbol: JNB_02295
gene_biotype: protein_coding
description:
  Putative D-alanine aminotransferase; COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.


ensembl_gene_id: JNB_02340
symbol: JNB_02340
gene_biotype: protein_coding
description:
  Thiolase family protein; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: JNB_02345
symbol: fabG
gene_biotype: protein_coding
description:
  3-ketoacyl-(acyl-carrier-protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: JNB_02380
symbol: JNB_02380
gene_biotype: protein_coding
description:
  Putative HIT family protein; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.


ensembl_gene_id: JNB_02385
symbol: JNB_02385
gene_biotype: protein_coding
description:
  Putative membrane transferase; COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: JNB_02405
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: JNB_02410
symbol: JNB_02410
gene_biotype: protein_coding
description:
  Formate dehydrogenase accessory protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.


ensembl_gene_id: JNB_02415
symbol: fdhD
gene_biotype: protein_coding
description:
  Putative formate dehydrogenase accessory protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: JNB_02420
symbol: JNB_02420
gene_biotype: protein_coding
description:
  Putative formate dehydrogenase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: JNB_02425
symbol: JNB_02425
gene_biotype: protein_coding
description:
  Probable kyurenine hydrolase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: JNB_02435
symbol: pdxT
gene_biotype: protein_coding
description:
  Putative amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: JNB_02445
symbol: ruvC
gene_biotype: protein_coding
description:
  Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: JNB_02450
symbol: ruvA
gene_biotype: protein_coding
description:
  DNA recombination protein, RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: JNB_02455
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: JNB_02465
symbol: secD
gene_biotype: protein_coding
description:
  SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: JNB_02470
symbol: secF
gene_biotype: protein_coding
description:
  Protein export protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: JNB_02475
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: JNB_02480
symbol: JNB_02480
gene_biotype: protein_coding
description:
  Putative ppGpp synthetase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: JNB_02495
symbol: JNB_02495
gene_biotype: protein_coding
description:
  COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.


ensembl_gene_id: JNB_02530
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: JNB_02540
symbol: JNB_02540
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: JNB_02545
symbol: JNB_02545
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: JNB_02550
symbol: JNB_02550
gene_biotype: protein_coding
description:
  Pseudouridine synthase, Rsu; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: JNB_02570
symbol: JNB_02570
gene_biotype: protein_coding
description:
  Putative 1-acylglycerol-3-phosphate O-acyltransferase; COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.


ensembl_gene_id: JNB_02585
symbol: der
gene_biotype: protein_coding
description:
  GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: JNB_02590
symbol: JNB_02590
gene_biotype: protein_coding
description:
  Response regulator domain, but no DNA binding domain-containing protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_02610
symbol: JNB_02610
gene_biotype: protein_coding
description:
  Phospholipase D/Transphosphatidylase; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.


ensembl_gene_id: JNB_02615
symbol: JNB_02615
gene_biotype: protein_coding
description:
  Putative transferase; COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities.


ensembl_gene_id: JNB_02620
symbol: JNB_02620
gene_biotype: protein_coding
description:
  COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: JNB_02640
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: JNB_02665
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: JNB_02675
symbol: sbcD
gene_biotype: protein_coding
description:
  Putative exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: JNB_02815
symbol: rbpA
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.


ensembl_gene_id: JNB_02830
symbol: lnt
gene_biotype: protein_coding
description:
  Putative polyprenol phosphate mannosyl transferase 2; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: JNB_02900
symbol: JNB_02900
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase.


ensembl_gene_id: JNB_02905
symbol: tatC
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: JNB_02910
symbol: tatA
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: JNB_02930
symbol: JNB_02930
gene_biotype: protein_coding
description:
  Putative FK-506 binding protein, peptidyl-prolyl cis-transisomerase; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.


ensembl_gene_id: JNB_02940
symbol: pafA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.


ensembl_gene_id: JNB_02955
symbol: prcA
gene_biotype: protein_coding
description:
  Putative 20S proteasome alpha-subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family.


ensembl_gene_id: JNB_02960
symbol: prcB
gene_biotype: protein_coding
description:
  Putative 20S proteasome beta-subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family.


ensembl_gene_id: JNB_02965
symbol: pup
gene_biotype: protein_coding
description:
  Hypothetical protein; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.


ensembl_gene_id: JNB_03045
symbol: JNB_03045
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.


ensembl_gene_id: JNB_03055
symbol: JNB_03055
gene_biotype: protein_coding
description:
  MetH; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: JNB_03085
symbol: cysS
gene_biotype: protein_coding
description:
  cysteinyl-tRNA synthetase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.


ensembl_gene_id: JNB_03100
symbol: JNB_03100
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.


ensembl_gene_id: JNB_03105
symbol: JNB_03105
gene_biotype: protein_coding
description:
  Putative integral membrane transport protein; COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.


ensembl_gene_id: JNB_03135
symbol: JNB_03135
gene_biotype: protein_coding
description:
  Putative FMN-dependent monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: JNB_03175
symbol: JNB_03175
gene_biotype: protein_coding
description:
  Putative MutT family protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.


ensembl_gene_id: JNB_03205
symbol: JNB_03205
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA.


ensembl_gene_id: JNB_03220
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: JNB_03225
symbol: JNB_03225
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: JNB_03240
symbol: JNB_03240
gene_biotype: protein_coding
description:
  Cyanophycin synthetase; COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; Belongs to the MurCDEF family.


ensembl_gene_id: JNB_03265
symbol: JNB_03265
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier protein] reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: JNB_03280
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: JNB_03285
symbol: JNB_03285
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase.


ensembl_gene_id: JNB_03340
symbol: JNB_03340
gene_biotype: protein_coding
description:
  Cysteine desulphurases, SufS; COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: JNB_03345
symbol: JNB_03345
gene_biotype: protein_coding
description:
  Multidrug Resistance Exporter; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.


ensembl_gene_id: JNB_03355
symbol: JNB_03355
gene_biotype: protein_coding
description:
  Putative iron-regulated ABC-type transporter; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.


ensembl_gene_id: JNB_03360
symbol: JNB_03360
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.


ensembl_gene_id: JNB_03370
symbol: JNB_03370
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--serine O-phosphatidyltransferase; COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: JNB_03375
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: JNB_03385
symbol: JNB_03385
gene_biotype: protein_coding
description:
  Putative integral membrane transport protein; COG0842 ABC-type multidrug transport system, permease component.


ensembl_gene_id: JNB_03440
symbol: ctaB
gene_biotype: protein_coding
description:
  Putative cytochrome oxidase assembly factor; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: JNB_03465
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.


ensembl_gene_id: JNB_03475
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: JNB_03490
symbol: rbpA-2
gene_biotype: protein_coding
description:
  Putative electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.


ensembl_gene_id: JNB_03495
symbol: JNB_03495
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: JNB_03500
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: JNB_03510
symbol: JNB_03510
gene_biotype: protein_coding
description:
  COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: JNB_03520
symbol: JNB_03520
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: JNB_03530
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: JNB_03535
symbol: JNB_03535
gene_biotype: protein_coding
description:
  Putative iron sulphur protein; COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.


ensembl_gene_id: JNB_03565
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: JNB_03580
symbol: JNB_03580
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].


ensembl_gene_id: JNB_03615
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: JNB_03625
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase/unknown domain fusion protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: JNB_03635
symbol: JNB_03635
gene_biotype: protein_coding
description:
  Two-component regulatory protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_03640
symbol: JNB_03640
gene_biotype: protein_coding
description:
  Iron ABC transporter substrate-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component.


ensembl_gene_id: JNB_03645
symbol: JNB_03645
gene_biotype: protein_coding
description:
  iron(III)-transport system permease protein sfuB; COG1178 ABC-type Fe3+ transport system, permease component.


ensembl_gene_id: JNB_03650
symbol: fbpC
gene_biotype: protein_coding
description:
  iron(III)-transport ATP-binding protein sfuC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.


ensembl_gene_id: JNB_03655
symbol: JNB_03655
gene_biotype: protein_coding
description:
  Putative inositol monophosphatase protein; COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family.


ensembl_gene_id: JNB_03670
symbol: JNB_03670
gene_biotype: protein_coding
description:
  COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: JNB_03760
symbol: JNB_03760
gene_biotype: protein_coding
description:
  Methylase involved in ubiquinone/menaquinonebiosynthesis-like protein; COG0500 SAM-dependent methyltransferases.


ensembl_gene_id: JNB_03765
symbol: JNB_03765
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.


ensembl_gene_id: JNB_03775
symbol: polA
gene_biotype: protein_coding
description:
  Putative DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: JNB_03810
symbol: JNB_03810
gene_biotype: protein_coding
description:
  Glutamate synthase, NADH/NADPH, small subunit 1; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.


ensembl_gene_id: JNB_03825
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: JNB_03840
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: JNB_03845
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: JNB_03865
symbol: trpE
gene_biotype: protein_coding
description:
  Putative anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high [...]


ensembl_gene_id: JNB_03870
symbol: hisI
gene_biotype: protein_coding
description:
  Probable phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: JNB_03880
symbol: hisF
gene_biotype: protein_coding
description:
  Putative cyclase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: JNB_03900
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: JNB_03910
symbol: ribH
gene_biotype: protein_coding
description:
  Riboflavin synthase subunit beta; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: JNB_03915
symbol: ribA
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family.  In the N-terminal section; belongs to the DHBP synthase family.


ensembl_gene_id: JNB_03930
symbol: JNB_03930
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: JNB_03945
symbol: JNB_03945
gene_biotype: protein_coding
description:
  Putative RNA-binding Sun protein; COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: JNB_03950
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: JNB_03955
symbol: priA
gene_biotype: protein_coding
description:
  Primosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: JNB_03960
symbol: JNB_03960
gene_biotype: protein_coding
description:
  Hydrolase, alpha/beta fold family protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: JNB_03965
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: JNB_03985
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: JNB_04000
symbol: pyrF
gene_biotype: protein_coding
description:
  COG0284 Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.


ensembl_gene_id: JNB_04010
symbol: JNB_04010
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase electron transfer subunit; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.


ensembl_gene_id: JNB_04025
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: JNB_04030
symbol: pyrB
gene_biotype: protein_coding
description:
  COG0540 Aspartate carbamoyltransferase, catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: JNB_04035
symbol: pyrR
gene_biotype: protein_coding
description:
  Pyrimidine regulatory protein PyrR; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.


ensembl_gene_id: JNB_04065
symbol: vapC
gene_biotype: protein_coding
description:
  Plasmid stability protein StbB; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: JNB_04080
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: JNB_04085
symbol: efp
gene_biotype: protein_coding
description:
  Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: JNB_04135
symbol: aroB-2
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: JNB_04140
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: JNB_04145
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: JNB_04185
symbol: mltG
gene_biotype: protein_coding
description:
  Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: JNB_04190
symbol: JNB_04190
gene_biotype: protein_coding
description:
  Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: JNB_04195
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: JNB_04200
symbol: JNB_04200
gene_biotype: protein_coding
description:
  Conserved ATP/GTP binding protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase.


ensembl_gene_id: JNB_04225
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: JNB_04245
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: JNB_04280
symbol: ppnK
gene_biotype: protein_coding
description:
  Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: JNB_04300
symbol: JNB_04300
gene_biotype: protein_coding
description:
  Putative hydrolase; COG0647 Predicted sugar phosphatases of the HAD superfamily; Belongs to the HAD-like hydrolase superfamily.


ensembl_gene_id: JNB_04315
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: JNB_04325
symbol: JNB_04325
gene_biotype: protein_coding
description:
  Metallophosphoesterase; COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.


ensembl_gene_id: JNB_04350
symbol: JNB_04350
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: JNB_04355
symbol: argD
gene_biotype: protein_coding
description:
  COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: JNB_04360
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: JNB_04365
symbol: argJ
gene_biotype: protein_coding
description:
  Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: JNB_04375
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: JNB_04380
symbol: JNB_04380
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier protein] reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: JNB_04385
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase beta subunit; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: JNB_04390
symbol: pheS
gene_biotype: protein_coding
description:
  COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: JNB_04395
symbol: JNB_04395
gene_biotype: protein_coding
description:
  Conserved membrane protein, putative permease; COG0477 Permeases of the major facilitator superfamily.


ensembl_gene_id: JNB_04400
symbol: JNB_04400
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.


ensembl_gene_id: JNB_04410
symbol: JNB_04410
gene_biotype: protein_coding
description:
  Putative rRNA methyltransferase; COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: JNB_04415
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: JNB_04425
symbol: infC
gene_biotype: protein_coding
description:
  Putative translation initiation factor; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: JNB_04435
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase.


ensembl_gene_id: JNB_04440
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: JNB_04455
symbol: hisC
gene_biotype: protein_coding
description:
  COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: JNB_04460
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: JNB_04465
symbol: glnE
gene_biotype: protein_coding
description:
  Putative glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the sign [...]


ensembl_gene_id: JNB_04480
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: JNB_04490
symbol: map
gene_biotype: protein_coding
description:
  Putative methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: JNB_04495
symbol: JNB_04495
gene_biotype: protein_coding
description:
  Polyphosphate glucokinase/transcriptional regulator; COG1940 Transcriptional regulator/sugar kinase.


ensembl_gene_id: JNB_04530
symbol: metZ
gene_biotype: protein_coding
description:
  Putative O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: JNB_04570
symbol: aceE
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase subunit E1; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: JNB_04575
symbol: JNB_04575
gene_biotype: protein_coding
description:
  Putative respose regulatory protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_04595
symbol: argG
gene_biotype: protein_coding
description:
  COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.


ensembl_gene_id: JNB_04615
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl carrier protein) synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: JNB_04620
symbol: acpP
gene_biotype: protein_coding
description:
  Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: JNB_04625
symbol: JNB_04625
gene_biotype: protein_coding
description:
  Putative 3-oxoacyl-ACP synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: JNB_04735
symbol: JNB_04735
gene_biotype: protein_coding
description:
  Glutamate uptake system ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.


ensembl_gene_id: JNB_04740
symbol: JNB_04740
gene_biotype: protein_coding
description:
  Glutamate-binding protein of ABC transporter system; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: JNB_04750
symbol: JNB_04750
gene_biotype: protein_coding
description:
  Putative glutamate transporter permease protein; COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: JNB_04760
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: JNB_04770
symbol: JNB_04770
gene_biotype: protein_coding
description:
  Deoxyguanosinetriphosphate triphosphohydrolase-like protein; COG0232 dGTP triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: JNB_04805
symbol: JNB_04805
gene_biotype: protein_coding
description:
  Putative oxidoreductase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: JNB_04815
symbol: glyQS
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: JNB_04825
symbol: JNB_04825
gene_biotype: protein_coding
description:
  Putative ABC-transporter metal-binding lipoprotein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: JNB_04835
symbol: JNB_04835
gene_biotype: protein_coding
description:
  Putative metal transport ABC transporter; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.


ensembl_gene_id: JNB_04845
symbol: JNB_04845
gene_biotype: protein_coding
description:
  Di-trans-poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: JNB_04855
symbol: JNB_04855
gene_biotype: protein_coding
description:
  Calcium/proton exchanger; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.


ensembl_gene_id: JNB_04885
symbol: menC
gene_biotype: protein_coding
description:
  N-acylamino acid racemase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).


ensembl_gene_id: JNB_04890
symbol: JNB_04890
gene_biotype: protein_coding
description:
  Hypothetical protein; COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.


ensembl_gene_id: JNB_04915
symbol: JNB_04915
gene_biotype: protein_coding
description:
  Putative aminotransferase protein; COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: JNB_04925
symbol: JNB_04925
gene_biotype: protein_coding
description:
  Probable dicarboxylic acid transport integral membrane protein kgtp (dicarboxylate; COG0477 Permeases of the major facilitator superfamily.


ensembl_gene_id: JNB_04930
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: JNB_04970
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: JNB_04975
symbol: JNB_04975
gene_biotype: protein_coding
description:
  Choline/carnitine/betaine transporter family protein; COG1292 Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: JNB_04980
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: JNB_04990
symbol: ybeY
gene_biotype: protein_coding
description:
  Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: JNB_05000
symbol: JNB_05000
gene_biotype: protein_coding
description:
  Putative protein kinase C inhibitor (HIT family protein); COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.


ensembl_gene_id: JNB_05015
symbol: JNB_05015
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: JNB_05020
symbol: dnaJ
gene_biotype: protein_coding
description:
  Putative DnaJ protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, Dn [...]


ensembl_gene_id: JNB_05025
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: JNB_05045
symbol: JNB_05045
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: JNB_05050
symbol: JNB_05050
gene_biotype: protein_coding
description:
  Ornithine cyclodeaminase/mu-crystallin family protein; COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.


ensembl_gene_id: JNB_05060
symbol: JNB_05060
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: JNB_05080
symbol: lepA
gene_biotype: protein_coding
description:
  Putative GTP-binding elongation factor; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: JNB_05145
symbol: hflX
gene_biotype: protein_coding
description:
  Putative ATP/GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: JNB_05155
symbol: JNB_05155
gene_biotype: protein_coding
description:
  Putative gamma-glutamyltranspeptidase (putative secreted protein); COG0405 Gamma-glutamyltransferase.


ensembl_gene_id: JNB_05160
symbol: dapF
gene_biotype: protein_coding
description:
  Putative diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: JNB_05165
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: JNB_05170
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: JNB_05180
symbol: miaB
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: JNB_05200
symbol: recA
gene_biotype: protein_coding
description:
  Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: JNB_05230
symbol: JNB_05230
gene_biotype: protein_coding
description:
  Probable conserved integral membrane transport protein; COG0477 Permeases of the major facilitator superfamily.


ensembl_gene_id: JNB_05265
symbol: JNB_05265
gene_biotype: protein_coding
description:
  Putative phosphatidyltransferase; COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: JNB_05270
symbol: rimO
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: JNB_05325
symbol: rnj
gene_biotype: protein_coding
description:
  Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: JNB_05330
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: JNB_05335
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: JNB_05340
symbol: JNB_05340
gene_biotype: protein_coding
description:
  Probable dihydrofolate reductase oxidoreductase protein; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: JNB_05345
symbol: JNB_05345
gene_biotype: protein_coding
description:
  Putative phenylacetic acid degradation NADH oxidoreductase PaaE; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.


ensembl_gene_id: JNB_05360
symbol: JNB_05360
gene_biotype: protein_coding
description:
  Putative membrane protein; COG1296 Predicted branched-chain amino acid permease (azaleucine resistance).


ensembl_gene_id: JNB_05400
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: JNB_05440
symbol: pnp
gene_biotype: protein_coding
description:
  Putative polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: JNB_05445
symbol: rpsO
gene_biotype: protein_coding
description:
  30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: JNB_05455
symbol: JNB_05455
gene_biotype: protein_coding
description:
  Ptp; COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: JNB_05525
symbol: JNB_05525
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding/permease protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: JNB_05530
symbol: JNB_05530
gene_biotype: protein_coding
description:
  Sugar metabolism cluster protein; COG0500 SAM-dependent methyltransferases; similar to quinone/porphyrin-methyltransferase (EC 2.1.1.-).


ensembl_gene_id: JNB_05570
symbol: JNB_05570
gene_biotype: protein_coding
description:
  Putative lipopolysaccharide biosynthesis protein; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: JNB_05575
symbol: JNB_05575
gene_biotype: protein_coding
description:
  Probable dtdp-glucose 4,6-dehydratase transmembrane protein; COG1086 Predicted nucleoside-diphosphate sugar epimerases.


ensembl_gene_id: JNB_05580
symbol: JNB_05580
gene_biotype: protein_coding
description:
  Conserved protein, putative metal-dependent hydrolase; COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.


ensembl_gene_id: JNB_05684
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: JNB_05724
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: JNB_05744
symbol: JNB_05744
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; COG1122 ABC-type cobalt transport system, ATPase component.


ensembl_gene_id: JNB_05749
symbol: JNB_05749
gene_biotype: protein_coding
description:
  Putative integral membrane protein; COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.


ensembl_gene_id: JNB_05764
symbol: JNB_05764
gene_biotype: protein_coding
description:
  Putative ATP/GTP binding protein (putative membrane protein); COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.


ensembl_gene_id: JNB_05814
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.


ensembl_gene_id: JNB_05844
symbol: JNB_05844
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).


ensembl_gene_id: JNB_05859
symbol: clpX
gene_biotype: protein_coding
description:
  ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: JNB_05869
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: JNB_05874
symbol: clpP-2
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit 1; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: JNB_05894
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: JNB_05904
symbol: trmB
gene_biotype: protein_coding
description:
  Possible S-adenosylmethionine-dependent methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: JNB_05974
symbol: JNB_05974
gene_biotype: protein_coding
description:
  Putative multidrug resistance efflux protein; COG0477 Permeases of the major facilitator superfamily.


ensembl_gene_id: JNB_06014
symbol: JNB_06014
gene_biotype: protein_coding
description:
  Putative transcriptional regulator/aminotransferase; COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.


ensembl_gene_id: JNB_06024
symbol: JNB_06024
gene_biotype: protein_coding
description:
  ABC-transporter ATP binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: JNB_06029
symbol: JNB_06029
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: JNB_06054
symbol: JNB_06054
gene_biotype: protein_coding
description:
  Putative glycogen debranching enzyme; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: JNB_06059
symbol: JNB_06059
gene_biotype: protein_coding
description:
  Putative 3-oxoacyl-ACP reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: JNB_06069
symbol: JNB_06069
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators.


ensembl_gene_id: JNB_06109
symbol: JNB_06109
gene_biotype: protein_coding
description:
  Hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: JNB_06114
symbol: JNB_06114
gene_biotype: protein_coding
description:
  Carbomycin resistance ATPase; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.


ensembl_gene_id: JNB_06139
symbol: JNB_06139
gene_biotype: protein_coding
description:
  Putative monooxygenase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.


ensembl_gene_id: JNB_06149
symbol: JNB_06149
gene_biotype: protein_coding
description:
  Putative hippurate hydrolase protein; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.


ensembl_gene_id: JNB_06159
symbol: orn
gene_biotype: protein_coding
description:
  Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: JNB_06184
symbol: JNB_06184
gene_biotype: protein_coding
description:
  Protein up-regulated by thyroid hormone-putative PQQ-dependent glucose dehydrogenase; COG2133 Glucose/sorbosone dehydrogenases.


ensembl_gene_id: JNB_06199
symbol: JNB_06199
gene_biotype: protein_coding
description:
  Putative transporter; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.


ensembl_gene_id: JNB_06204
symbol: JNB_06204
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.


ensembl_gene_id: JNB_06209
symbol: JNB_06209
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.


ensembl_gene_id: JNB_06254
symbol: JNB_06254
gene_biotype: protein_coding
description:
  Hypothetical protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: JNB_06259
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: JNB_06279
symbol: clpS-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: JNB_06284
symbol: JNB_06284
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: JNB_06289
symbol: JNB_06289
gene_biotype: protein_coding
description:
  Probable integral membrane nitrite extrusion protein NarU (nitrite facilitator); COG2223 Nitrate/nitrite transporter.


ensembl_gene_id: JNB_06294
symbol: JNB_06294
gene_biotype: protein_coding
description:
  Putative nitrate reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: JNB_06344
symbol: JNB_06344
gene_biotype: protein_coding
description:
  Putative nitrite reductase (NAD(P)H) subunit; COG1251 NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: JNB_06354
symbol: JNB_06354
gene_biotype: protein_coding
description:
  Putative uroporphyrin-III methyltransferase; COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).


ensembl_gene_id: JNB_06404
symbol: JNB_06404
gene_biotype: protein_coding
description:
  Putative fumarylacetoacetase; COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).


ensembl_gene_id: JNB_06429
symbol: JNB_06429
gene_biotype: protein_coding
description:
  ABC transporter (ATP-binding protein); COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: JNB_06499
symbol: JNB_06499
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1678 Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: JNB_06549
symbol: JNB_06549
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.


ensembl_gene_id: JNB_06569
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: JNB_06579
symbol: JNB_06579
gene_biotype: protein_coding
description:
  Putative cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: JNB_06614
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: JNB_06654
symbol: JNB_06654
gene_biotype: protein_coding
description:
  Putative type II/type IV pathway secretion protein; COG4962 Flp pilus assembly protein, ATPase CpaF.


ensembl_gene_id: JNB_06779
symbol: glgE
gene_biotype: protein_coding
description:
  Alpha amylase, catalytic subdomain; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.


ensembl_gene_id: JNB_06794
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: JNB_06844
symbol: JNB_06844
gene_biotype: protein_coding
description:
  Probable ABC transporter permease protein; COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: JNB_06854
symbol: JNB_06854
gene_biotype: protein_coding
description:
  Sugar ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: JNB_06949
symbol: JNB_06949
gene_biotype: protein_coding
description:
  Putative oxidoreductase protein; COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.


ensembl_gene_id: JNB_06964
symbol: nucS
gene_biotype: protein_coding
description:
  Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.


ensembl_gene_id: JNB_06974
symbol: JNB_06974
gene_biotype: protein_coding
description:
  Hypothetical protein; COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases.


ensembl_gene_id: JNB_07004
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase, epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: JNB_07009
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: JNB_07014
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase, gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: JNB_07019
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: JNB_07024
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: JNB_07029
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: JNB_07034
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: JNB_07039
symbol: atpB
gene_biotype: protein_coding
description:
  H+-transporting two-sector ATPase, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: JNB_07044
symbol: JNB_07044
gene_biotype: protein_coding
description:
  ATP synthase protein I; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: JNB_07054
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: JNB_07069
symbol: prmC
gene_biotype: protein_coding
description:
  Putative methylase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: JNB_07074
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: JNB_07094
symbol: JNB_07094
gene_biotype: protein_coding
description:
  Possible transcriptional regulatory protein (probably lrp/asnc-family protein); COG1522 Transcriptional regulators.


ensembl_gene_id: JNB_07104
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: JNB_07109
symbol: thrB
gene_biotype: protein_coding
description:
  Putative homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: JNB_07114
symbol: JNB_07114
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: JNB_07124
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: JNB_07159
symbol: kgd
gene_biotype: protein_coding
description:
  Alpha-ketoglutarate decarboxylase; COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.


ensembl_gene_id: JNB_07249
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: JNB_07254
symbol: rsgA
gene_biotype: protein_coding
description:
  Hypothetical protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: JNB_07259
symbol: JNB_07259
gene_biotype: protein_coding
description:
  Putative peptide ABC transporter, ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_07264
symbol: JNB_07264
gene_biotype: protein_coding
description:
  COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_07279
symbol: JNB_07279
gene_biotype: protein_coding
description:
  Putative peptide transport system secreted peptide-binding protein; COG4166 ABC-type oligopeptide transport system, periplasmic component.


ensembl_gene_id: JNB_07284
symbol: JNB_07284
gene_biotype: protein_coding
description:
  Putative inositol monophosphatase; COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family.


ensembl_gene_id: JNB_07389
symbol: whiB
gene_biotype: protein_coding
description:
  Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: JNB_07409
symbol: JNB_07409
gene_biotype: protein_coding
description:
  NADH pyrophosphatase; COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding.


ensembl_gene_id: JNB_07429
symbol: JNB_07429
gene_biotype: protein_coding
description:
  COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.


ensembl_gene_id: JNB_07489
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: JNB_07549
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: JNB_07554
symbol: JNB_07554
gene_biotype: protein_coding
description:
  COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: JNB_07599
symbol: JNB_07599
gene_biotype: protein_coding
description:
  RIO1/ZK632.3/MJ0444 family protein; COG1718 Serine/threonine protein kinase involved in cell cycle control.


ensembl_gene_id: JNB_07634
symbol: JNB_07634
gene_biotype: protein_coding
description:
  Citrate lyase, beta subunit, putative; COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: JNB_07654
symbol: JNB_07654
gene_biotype: protein_coding
description:
  Putative ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: JNB_07664
symbol: JNB_07664
gene_biotype: protein_coding
description:
  Putative protease; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.


ensembl_gene_id: JNB_07674
symbol: JNB_07674
gene_biotype: protein_coding
description:
  Putative ECF-subfamily sigma factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: JNB_07689
symbol: pepA-2
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: JNB_07719
symbol: JNB_07719
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1611 Predicted Rossmann fold nucleotide-binding protein; Belongs to the LOG family.


ensembl_gene_id: JNB_07734
symbol: dapD
gene_biotype: protein_coding
description:
  Probable transferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.


ensembl_gene_id: JNB_07764
symbol: JNB_07764
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: JNB_07779
symbol: JNB_07779
gene_biotype: protein_coding
description:
  Putative reductase; COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.


ensembl_gene_id: JNB_07784
symbol: JNB_07784
gene_biotype: protein_coding
description:
  Putative N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D- glucopyranoside deacetylase; COG2120 Uncharacterized proteins, LmbE homologs; Belongs to the MshB deacetylase family.


ensembl_gene_id: JNB_07789
symbol: JNB_07789
gene_biotype: protein_coding
description:
  Putative ABC transporter solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: JNB_07794
symbol: JNB_07794
gene_biotype: protein_coding
description:
  Small GTP-binding protein domain:GTP-binding protein TypA; COG1217 Predicted membrane GTPase involved in stress response.


ensembl_gene_id: JNB_07799
symbol: JNB_07799
gene_biotype: protein_coding
description:
  Putative mutT-like protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: JNB_07804
symbol: JNB_07804
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, peptide-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: JNB_07814
symbol: JNB_07814
gene_biotype: protein_coding
description:
  Probable ABC-transport protein, inner membrane component; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: JNB_07819
symbol: JNB_07819
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATP-binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_07824
symbol: JNB_07824
gene_biotype: protein_coding
description:
  Oligopeptide ABC transporter ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_07854
symbol: JNB_07854
gene_biotype: protein_coding
description:
  Putative sodium/proline symporter; COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: JNB_07874
symbol: JNB_07874
gene_biotype: protein_coding
description:
  TcrA; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_07909
symbol: vapC-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: JNB_07919
symbol: ychF
gene_biotype: protein_coding
description:
  Putative GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: JNB_07929
symbol: JNB_07929
gene_biotype: protein_coding
description:
  COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: JNB_07949
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: JNB_07964
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: JNB_07969
symbol: JNB_07969
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: JNB_07979
symbol: JNB_07979
gene_biotype: protein_coding
description:
  Putative fructose-1,6-bisphosphatase II; COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins.


ensembl_gene_id: JNB_07984
symbol: JNB_07984
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0524 Sugar kinases, ribokinase family; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: JNB_07989
symbol: JNB_07989
gene_biotype: protein_coding
description:
  Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: JNB_08019
symbol: JNB_08019
gene_biotype: protein_coding
description:
  Putative ABC transporter substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: JNB_08024
symbol: JNB_08024
gene_biotype: protein_coding
description:
  Putative ABC transporter permease protein; COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: JNB_08029
symbol: JNB_08029
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.


ensembl_gene_id: JNB_08034
symbol: glmM
gene_biotype: protein_coding
description:
  Putative phosphoglucomutase/phosphomannomutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: JNB_08044
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: JNB_08059
symbol: JNB_08059
gene_biotype: protein_coding
description:
  Monooxygenase, flavin-binding family protein; COG2072 Predicted flavoprotein involved in K+ transport.


ensembl_gene_id: JNB_08064
symbol: JNB_08064
gene_biotype: protein_coding
description:
  Putative secreted bifunctional (alpha-amylase andendo-alpha-glucosidase) protein; COG0366 Glycosidases.


ensembl_gene_id: JNB_08074
symbol: truA-2
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: JNB_08099
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: JNB_08104
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: JNB_08109
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: JNB_08114
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: JNB_08124
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: JNB_08139
symbol: JNB_08139
gene_biotype: protein_coding
description:
  Arginine/ornithine transport system ATPase; COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family.


ensembl_gene_id: JNB_08184
symbol: JNB_08184
gene_biotype: protein_coding
description:
  Alkanal monooxygenase (bacterial liciferase alpha chain) likeprotein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: JNB_08189
symbol: map-3
gene_biotype: protein_coding
description:
  Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: JNB_08204
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: JNB_08209
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: JNB_08214
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: JNB_08224
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: JNB_08229
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: JNB_08234
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: JNB_08239
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: JNB_08244
symbol: rpsZ
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: JNB_08249
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: JNB_08254
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: JNB_08259
symbol: rplN
gene_biotype: protein_coding
description:
  Putative ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: JNB_08264
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: JNB_08274
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: JNB_08279
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: JNB_08284
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: JNB_08289
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: JNB_08294
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: JNB_08299
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: JNB_08309
symbol: rplC
gene_biotype: protein_coding
description:
  Putative ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: JNB_08314
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: JNB_08329
symbol: tuf-2
gene_biotype: protein_coding
description:
  Elongation factor; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: JNB_08334
symbol: fusA
gene_biotype: protein_coding
description:
  Elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: JNB_08339
symbol: rpsG
gene_biotype: protein_coding
description:
  30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: JNB_08344
symbol: rpsL
gene_biotype: protein_coding
description:
  30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: JNB_08354
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: JNB_08359
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: JNB_08364
symbol: rplL
gene_biotype: protein_coding
description:
  50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: JNB_08369
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: JNB_08389
symbol: JNB_08389
gene_biotype: protein_coding
description:
  Putative mce-related protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.


ensembl_gene_id: JNB_08419
symbol: JNB_08419
gene_biotype: protein_coding
description:
  Putative ABC transporter integral membrane protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.


ensembl_gene_id: JNB_08429
symbol: JNB_08429
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.


ensembl_gene_id: JNB_08434
symbol: rplA
gene_biotype: protein_coding
description:
  50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: JNB_08439
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: JNB_08444
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: JNB_08449
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: JNB_08459
symbol: JNB_08459
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.


ensembl_gene_id: JNB_08464
symbol: JNB_08464
gene_biotype: protein_coding
description:
  Adenosine deaminase; COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase).


ensembl_gene_id: JNB_08504
symbol: JNB_08504
gene_biotype: protein_coding
description:
  COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: JNB_08514
symbol: JNB_08514
gene_biotype: protein_coding
description:
  Putative polyamine ABC-transporter integral membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.


ensembl_gene_id: JNB_08519
symbol: JNB_08519
gene_biotype: protein_coding
description:
  Putative polyamine ABC transporter permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.


ensembl_gene_id: JNB_08524
symbol: JNB_08524
gene_biotype: protein_coding
description:
  Putative polyamine ABC transporter ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_08529
symbol: JNB_08529
gene_biotype: protein_coding
description:
  Putative ABC-transporter polyamine-binding lipoprotein; COG0687 Spermidine/putrescine-binding periplasmic protein.


ensembl_gene_id: JNB_08544
symbol: JNB_08544
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: JNB_08569
symbol: speE
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.


ensembl_gene_id: JNB_08614
symbol: JNB_08614
gene_biotype: protein_coding
description:
  Putative short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: JNB_08649
symbol: JNB_08649
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_08654
symbol: icmF
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase, N-terminal; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.


ensembl_gene_id: JNB_08669
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: JNB_08689
symbol: JNB_08689
gene_biotype: protein_coding
description:
  COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.


ensembl_gene_id: JNB_08744
symbol: JNB_08744
gene_biotype: protein_coding
description:
  Putative zinc-type alcohol dehydrogenase transmembrane protein; COG1062 Zn-dependent alcohol dehydrogenases, class III.


ensembl_gene_id: JNB_08789
symbol: htpX
gene_biotype: protein_coding
description:
  Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.


ensembl_gene_id: JNB_08794
symbol: JNB_08794
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine N-acetyltransferase; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: JNB_08809
symbol: JNB_08809
gene_biotype: protein_coding
description:
  COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.


ensembl_gene_id: JNB_08814
symbol: nuoK
gene_biotype: protein_coding
description:
  Hypothetical protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: JNB_08819
symbol: JNB_08819
gene_biotype: protein_coding
description:
  Hypothetical protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: JNB_08824
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: JNB_08829
symbol: nuoH
gene_biotype: protein_coding
description:
  Putative NADH dehydrogenase I chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: JNB_08849
symbol: JNB_08849
gene_biotype: protein_coding
description:
  Sugar ABC transporter, sugar-binding protein, putative; COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: JNB_08864
symbol: nuoB
gene_biotype: protein_coding
description:
  Putative NADH dehydrogenase I chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: JNB_08894
symbol: JNB_08894
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.


ensembl_gene_id: JNB_08914
symbol: JNB_08914
gene_biotype: protein_coding
description:
  COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.


ensembl_gene_id: JNB_08919
symbol: JNB_08919
gene_biotype: protein_coding
description:
  Ferrodoxin oxidoreductase beta subunit; COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.


ensembl_gene_id: JNB_08949
symbol: JNB_08949
gene_biotype: protein_coding
description:
  Putative integral membrane transport protein; COG0477 Permeases of the major facilitator superfamily.


ensembl_gene_id: JNB_08954
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: JNB_08959
symbol: JNB_08959
gene_biotype: protein_coding
description:
  Putative polyprenyl diphosphate synthase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: JNB_08964
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: JNB_08979
symbol: nuoK-2
gene_biotype: protein_coding
description:
  NADH dehydrogenase kappa subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: JNB_08984
symbol: JNB_08984
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: JNB_08989
symbol: nuoI-2
gene_biotype: protein_coding
description:
  NuoI, NADH dehydrogenase subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: JNB_08994
symbol: nuoH-2
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: JNB_08999
symbol: JNB_08999
gene_biotype: protein_coding
description:
  NADH dehydrogenase gamma subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: JNB_09004
symbol: JNB_09004
gene_biotype: protein_coding
description:
  Putative NADH dehydrogenase I chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: JNB_09014
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase delta subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: JNB_09019
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: JNB_09024
symbol: nuoB-2
gene_biotype: protein_coding
description:
  NADH dehydrogenase beta subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: JNB_09029
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH dehydrogenase alpha subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: JNB_09034
symbol: menG
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).


ensembl_gene_id: JNB_09044
symbol: JNB_09044
gene_biotype: protein_coding
description:
  Conserved membrane-associated protein (OmpA family protein); COG2949 Uncharacterized membrane protein.


ensembl_gene_id: JNB_09074
symbol: menD
gene_biotype: protein_coding
description:
  2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.


ensembl_gene_id: JNB_09129
symbol: JNB_09129
gene_biotype: protein_coding
description:
  Putative RNA-polymerase sigma factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: JNB_09184
symbol: menC-2
gene_biotype: protein_coding
description:
  O-succinylbenzoate-CoA synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).


ensembl_gene_id: JNB_09194
symbol: menB
gene_biotype: protein_coding
description:
  Putative naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.


ensembl_gene_id: JNB_09219
symbol: menA
gene_biotype: protein_coding
description:
  1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.


ensembl_gene_id: JNB_09234
symbol: JNB_09234
gene_biotype: protein_coding
description:
  Putative cytochrome C assembly protein; COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component.


ensembl_gene_id: JNB_09239
symbol: JNB_09239
gene_biotype: protein_coding
description:
  Conserved protein, putative c-type cytochrome biogenesis protein; COG1333 ResB protein required for cytochrome c biosynthesis.


ensembl_gene_id: JNB_09279
symbol: JNB_09279
gene_biotype: protein_coding
description:
  Putative uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase; COG0007 Uroporphyrinogen-III methylase.


ensembl_gene_id: JNB_09284
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: JNB_09289
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: JNB_09294
symbol: rex
gene_biotype: protein_coding
description:
  Redox-sensing transcriptional repressor Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: JNB_09324
symbol: JNB_09324
gene_biotype: protein_coding
description:
  Putative acetoin utilization protein; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.


ensembl_gene_id: JNB_09344
symbol: proC
gene_biotype: protein_coding
description:
  Delta 1-pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: JNB_09359
symbol: JNB_09359
gene_biotype: protein_coding
description:
  Putative ABC transporter permease protein; COG0842 ABC-type multidrug transport system, permease component.


ensembl_gene_id: JNB_09404
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: JNB_09409
symbol: panC
gene_biotype: protein_coding
description:
  Putative pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: JNB_09434
symbol: nuoD-2
gene_biotype: protein_coding
description:
  Putative NADH dehydrogenase I chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: JNB_09459
symbol: JNB_09459
gene_biotype: protein_coding
description:
  Putative dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: JNB_09469
symbol: ftsH
gene_biotype: protein_coding
description:
  Putative cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: JNB_09474
symbol: JNB_09474
gene_biotype: protein_coding
description:
  Putative metallo-beta-lactamase-like protein; COG0491 Zn-dependent hydrolases, including glyoxylases.


ensembl_gene_id: JNB_09479
symbol: JNB_09479
gene_biotype: protein_coding
description:
  COG0634 Hypoxanthine-guanine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: JNB_09494
symbol: tilS
gene_biotype: protein_coding
description:
  Helix-turn-helix, Fis-type protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: JNB_09509
symbol: ppa
gene_biotype: protein_coding
description:
  Putative inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: JNB_09514
symbol: JNB_09514
gene_biotype: protein_coding
description:
  GCN5-related N-acetyltransferase; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: JNB_09549
symbol: JNB_09549
gene_biotype: protein_coding
description:
  Proteinase (putative secreted protein); COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: JNB_09559
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: JNB_09574
symbol: JNB_09574
gene_biotype: protein_coding
description:
  Putative zinc-binding oxidoreductase; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: JNB_09579
symbol: aroE
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: JNB_09584
symbol: topA
gene_biotype: protein_coding
description:
  Putative DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing [...]


ensembl_gene_id: JNB_09644
symbol: JNB_09644
gene_biotype: protein_coding
description:
  Regulatory protein, LuxR:Response regulator receiver; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_09649
symbol: JNB_09649
gene_biotype: protein_coding
description:
  Conserved protein with diacylglycerol kinase catalytic domain; COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase.


ensembl_gene_id: JNB_09699
symbol: JNB_09699
gene_biotype: protein_coding
description:
  Putative ABC transporter; COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: JNB_09714
symbol: JNB_09714
gene_biotype: protein_coding
description:
  Putative transferase; COG2890 Methylase of polypeptide chain release factors; Belongs to the methyltransferase superfamily.


ensembl_gene_id: JNB_09724
symbol: hppA
gene_biotype: protein_coding
description:
  Putative pyrophosphate synthase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: JNB_09729
symbol: JNB_09729
gene_biotype: protein_coding
description:
  COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: JNB_09734
symbol: JNB_09734
gene_biotype: protein_coding
description:
  Putative ATP-dependent RNA helicase; COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster.


ensembl_gene_id: JNB_09814
symbol: JNB_09814
gene_biotype: protein_coding
description:
  Putative transporter; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: JNB_09829
symbol: JNB_09829
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; COG1178 ABC-type Fe3+ transport system, permease component.


ensembl_gene_id: JNB_09834
symbol: JNB_09834
gene_biotype: protein_coding
description:
  iron(III) ABC transporter, ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_09859
symbol: JNB_09859
gene_biotype: protein_coding
description:
  2-amino-3-ketobutyrate coenzyme A ligase; COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.


ensembl_gene_id: JNB_09864
symbol: kbl
gene_biotype: protein_coding
description:
  Putative 2-amino-3-oxobutyrate:CoA ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.


ensembl_gene_id: JNB_09899
symbol: JNB_09899
gene_biotype: protein_coding
description:
  Putative two component system response regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_09919
symbol: tdh
gene_biotype: protein_coding
description:
  L-threonine 3-dehydrogenase; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.


ensembl_gene_id: JNB_09994
symbol: JNB_09994
gene_biotype: protein_coding
description:
  Putative ABC transporter, ATP-binding subunit; COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: JNB_09999
symbol: JNB_09999
gene_biotype: protein_coding
description:
  Putative integral membrane protein; COG0842 ABC-type multidrug transport system, permease component.


ensembl_gene_id: JNB_10004
symbol: acsA
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: JNB_10019
symbol: JNB_10019
gene_biotype: protein_coding
description:
  COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: JNB_10044
symbol: nhaA
gene_biotype: protein_coding
description:
  Putative sodium/proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: JNB_10059
symbol: nth
gene_biotype: protein_coding
description:
  Putative endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: JNB_10064
symbol: JNB_10064
gene_biotype: protein_coding
description:
  Putative transcriptional regulator with cyclic nucleotide-binding domain protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: JNB_10104
symbol: whiB-2
gene_biotype: protein_coding
description:
  Putative regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: JNB_10139
symbol: pfp
gene_biotype: protein_coding
description:
  Pyrophosphate--fructose 6-phosphate 1-phosphotransferase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: JNB_10149
symbol: JNB_10149
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase, USG-1 related; COG0136 Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: JNB_10159
symbol: JNB_10159
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: JNB_10169
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: JNB_10174
symbol: JNB_10174
gene_biotype: protein_coding
description:
  1-acylglycerol-3-phosphate O-acyltransferase; COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.


ensembl_gene_id: JNB_10179
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: JNB_10184
symbol: JNB_10184
gene_biotype: protein_coding
description:
  ATP-binding protein of sugar ABC transporter; COG3839 ABC-type sugar transport systems, ATPase components.


ensembl_gene_id: JNB_10219
symbol: JNB_10219
gene_biotype: protein_coding
description:
  Protein disulfide isomerase (S-S rearrangase); COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.


ensembl_gene_id: JNB_10234
symbol: murQ
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.


ensembl_gene_id: JNB_10259
symbol: JNB_10259
gene_biotype: protein_coding
description:
  beta-N-acetylglucosaminidase (putative secreted protein); COG1472 Beta-glucosidase-related glycosidases.


ensembl_gene_id: JNB_10264
symbol: JNB_10264
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.


ensembl_gene_id: JNB_10354
symbol: JNB_10354
gene_biotype: protein_coding
description:
  Putative secreted solute binding protein; COG1879 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: JNB_10359
symbol: JNB_10359
gene_biotype: protein_coding
description:
  Putative ABC transporter integral membrane protein; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.


ensembl_gene_id: JNB_10374
symbol: JNB_10374
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase-related protein; COG2222 Predicted phosphosugar isomerases.


ensembl_gene_id: JNB_10449
symbol: JNB_10449
gene_biotype: protein_coding
description:
  COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: JNB_10454
symbol: JNB_10454
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: JNB_10499
symbol: JNB_10499
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.


ensembl_gene_id: JNB_10574
symbol: JNB_10574
gene_biotype: protein_coding
description:
  Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: JNB_10604
symbol: JNB_10604
gene_biotype: protein_coding
description:
  Putative cyclohex-1-ene-1-carboxylate:CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.


ensembl_gene_id: JNB_10609
symbol: JNB_10609
gene_biotype: protein_coding
description:
  Probable short-chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: JNB_10644
symbol: JNB_10644
gene_biotype: protein_coding
description:
  FadA6_3; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: JNB_10674
symbol: JNB_10674
gene_biotype: protein_coding
description:
  Putative fatty acid-CoA racemase; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.


ensembl_gene_id: JNB_10714
symbol: JNB_10714
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.


ensembl_gene_id: JNB_10769
symbol: tadA
gene_biotype: protein_coding
description:
  Possible cytidine and deoxycytidylate deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: JNB_10774
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: JNB_10799
symbol: pntB
gene_biotype: protein_coding
description:
  Pyridine nucleotide transhydrogenase; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: JNB_10864
symbol: crcB
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: JNB_10869
symbol: crcB-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: JNB_10924
symbol: JNB_10924
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.


ensembl_gene_id: JNB_10929
symbol: JNB_10929
gene_biotype: protein_coding
description:
  Probable oxidoreductase protein; COG4221 Short-chain alcohol dehydrogenase of unknown specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: JNB_10934
symbol: JNB_10934
gene_biotype: protein_coding
description:
  K+ channel beta subunit; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).


ensembl_gene_id: JNB_10959
symbol: JNB_10959
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.


ensembl_gene_id: JNB_10999
symbol: JNB_10999
gene_biotype: protein_coding
description:
  Putative 2-hydroxyacid-family dehydrogenase; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: JNB_11004
symbol: JNB_11004
gene_biotype: protein_coding
description:
  Putative binding protein-dependent transport protein; COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: JNB_11009
symbol: JNB_11009
gene_biotype: protein_coding
description:
  Putative binding protein dependent transport protein; COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: JNB_11014
symbol: JNB_11014
gene_biotype: protein_coding
description:
  Probable solute-binding lipoprotein; COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: JNB_11049
symbol: JNB_11049
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis protein (HesA/MoeB/ThiF familyprotein), putative; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.


ensembl_gene_id: JNB_11079
symbol: JNB_11079
gene_biotype: protein_coding
description:
  Possible dipeptide ABC transporter (dipeptide-binding protein); COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: JNB_11084
symbol: JNB_11084
gene_biotype: protein_coding
description:
  ABC transporter permease protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: JNB_11094
symbol: JNB_11094
gene_biotype: protein_coding
description:
  ABC peptide transporter, fused ATPase domains; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.


ensembl_gene_id: JNB_11099
symbol: JNB_11099
gene_biotype: protein_coding
description:
  AppF; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_11104
symbol: JNB_11104
gene_biotype: protein_coding
description:
  Monooxygenase, NtaA/SnaA/SoxA family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: JNB_11109
symbol: JNB_11109
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: JNB_11119
symbol: JNB_11119
gene_biotype: protein_coding
description:
  COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.


ensembl_gene_id: JNB_11124
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: JNB_11144
symbol: JNB_11144
gene_biotype: protein_coding
description:
  Putative fatty acid oxidative multifunctional enzyme; COG1024 Enoyl-CoA hydratase/carnithine racemase.


ensembl_gene_id: JNB_11149
symbol: JNB_11149
gene_biotype: protein_coding
description:
  L-carnitine dehydratase/bile acid-inducible protein F; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.


ensembl_gene_id: JNB_11164
symbol: JNB_11164
gene_biotype: protein_coding
description:
  Putative two component system response regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_11174
symbol: JNB_11174
gene_biotype: protein_coding
description:
  Putative integral membrane protein; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.


ensembl_gene_id: JNB_11194
symbol: JNB_11194
gene_biotype: protein_coding
description:
  Putative methylated-DNA--protein-cysteine S-methyltransferase; COG0350 Methylated DNA-protein cysteine methyltransferase.


ensembl_gene_id: JNB_11219
symbol: JNB_11219
gene_biotype: protein_coding
description:
  Putative permease abc transporter protein; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.


ensembl_gene_id: JNB_11234
symbol: JNB_11234
gene_biotype: protein_coding
description:
  Levanase; COG1621 Beta-fructosidases (levanase/invertase); Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: JNB_11264
symbol: JNB_11264
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.


ensembl_gene_id: JNB_11304
symbol: JNB_11304
gene_biotype: protein_coding
description:
  Putative sigma factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: JNB_11324
symbol: JNB_11324
gene_biotype: protein_coding
description:
  COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).


ensembl_gene_id: JNB_11339
symbol: JNB_11339
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding subunit; COG1125 ABC-type proline/glycine betaine transport systems, ATPase components.


ensembl_gene_id: JNB_11344
symbol: JNB_11344
gene_biotype: protein_coding
description:
  Probable glycerol-3-phosphate ABC transporter, permease; COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: JNB_11349
symbol: JNB_11349
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate ABC transporter permease protein; COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: JNB_11354
symbol: JNB_11354
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate ABC transporter substarate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: JNB_11359
symbol: JNB_11359
gene_biotype: protein_coding
description:
  Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; Belongs to the amidase family.


ensembl_gene_id: JNB_11384
symbol: JNB_11384
gene_biotype: protein_coding
description:
  ABC transporter substrate binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: JNB_11394
symbol: JNB_11394
gene_biotype: protein_coding
description:
  ABC transporter permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: JNB_11399
symbol: anmK
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: JNB_11409
symbol: JNB_11409
gene_biotype: protein_coding
description:
  DppD_1; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_11424
symbol: dcd
gene_biotype: protein_coding
description:
  Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.


ensembl_gene_id: JNB_11494
symbol: JNB_11494
gene_biotype: protein_coding
description:
  Transmembrane serine/threonine-protein kinase a pkna (proteinkinase a) (stpk a); COG0515 Serine/threonine protein kinase.


ensembl_gene_id: JNB_11499
symbol: JNB_11499
gene_biotype: protein_coding
description:
  Conserved hypothetical, predicted membrane protein (TMS6); COG0671 Membrane-associated phospholipid phosphatase.


ensembl_gene_id: JNB_11589
symbol: JNB_11589
gene_biotype: protein_coding
description:
  COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.


ensembl_gene_id: JNB_11594
symbol: JNB_11594
gene_biotype: protein_coding
description:
  Putative branched-chain alpha keto acid dehydrogenase E1 beta subunit; COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.


ensembl_gene_id: JNB_11599
symbol: JNB_11599
gene_biotype: protein_coding
description:
  COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.


ensembl_gene_id: JNB_11609
symbol: JNB_11609
gene_biotype: protein_coding
description:
  Putative hydrolase transmembrane protein; COG1680 Beta-lactamase class C and other penicillin binding proteins.


ensembl_gene_id: JNB_11634
symbol: pat
gene_biotype: protein_coding
description:
  Putative histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: JNB_11644
symbol: JNB_11644
gene_biotype: protein_coding
description:
  Von Willebrand factor, type A; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.


ensembl_gene_id: JNB_11664
symbol: JNB_11664
gene_biotype: protein_coding
description:
  Putative ABC transporter; COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.


ensembl_gene_id: JNB_11669
symbol: JNB_11669
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: JNB_11684
symbol: JNB_11684
gene_biotype: protein_coding
description:
  Putative low molecular weight protein tyrosine phosphatase; COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: JNB_11699
symbol: JNB_11699
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.


ensembl_gene_id: JNB_11714
symbol: JNB_11714
gene_biotype: protein_coding
description:
  COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: JNB_11729
symbol: JNB_11729
gene_biotype: protein_coding
description:
  The iron-vibriobactin/enterobactin uptake porter; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.


ensembl_gene_id: JNB_11734
symbol: JNB_11734
gene_biotype: protein_coding
description:
  ABC Fe+3-siderophore transporter, inner membrane subunit; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: JNB_11739
symbol: JNB_11739
gene_biotype: protein_coding
description:
  Putative iron transporter; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: JNB_11744
symbol: JNB_11744
gene_biotype: protein_coding
description:
  Iron ABC transporter, substrate binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.


ensembl_gene_id: JNB_11759
symbol: JNB_11759
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; COG4152 ABC-type uncharacterized transport system, ATPase component.


ensembl_gene_id: JNB_11779
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: JNB_11829
symbol: JNB_11829
gene_biotype: protein_coding
description:
  Putative membrane protein; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.


ensembl_gene_id: JNB_11864
symbol: JNB_11864
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.


ensembl_gene_id: JNB_11934
symbol: JNB_11934
gene_biotype: protein_coding
description:
  COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family.


ensembl_gene_id: JNB_12119
symbol: JNB_12119
gene_biotype: protein_coding
description:
  Putative serine protease (putative secreted protein); COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.


ensembl_gene_id: JNB_12124
symbol: JNB_12124
gene_biotype: protein_coding
description:
  Putative rifampin monooxygenase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.


ensembl_gene_id: JNB_12214
symbol: JNB_12214
gene_biotype: protein_coding
description:
  Zinc metalloprotein; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: JNB_12294
symbol: JNB_12294
gene_biotype: protein_coding
description:
  Hypothetical protein; COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.


ensembl_gene_id: JNB_12319
symbol: JNB_12319
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.


ensembl_gene_id: JNB_12369
symbol: JNB_12369
gene_biotype: protein_coding
description:
  Glutathione peroxidase-like protein; COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family.


ensembl_gene_id: JNB_12379
symbol: JNB_12379
gene_biotype: protein_coding
description:
  Putave phosphosugar isomerase; COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains.


ensembl_gene_id: JNB_12389
symbol: JNB_12389
gene_biotype: protein_coding
description:
  Tagatose 6-phosphate kinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB).


ensembl_gene_id: JNB_12409
symbol: JNB_12409
gene_biotype: protein_coding
description:
  AraC type helix-turn-helix:ThiJ/PfpI family protein; COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.


ensembl_gene_id: JNB_12483
symbol: JNB_12483
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.


ensembl_gene_id: JNB_12503
symbol: JNB_12503
gene_biotype: protein_coding
description:
  Ribose ABC transporter, permease protein (rbsC-2); COG1079 Uncharacterized ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: JNB_12508
symbol: JNB_12508
gene_biotype: protein_coding
description:
  Sugar ABC transporter, permease protein; COG4603 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: JNB_12518
symbol: JNB_12518
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.


ensembl_gene_id: JNB_12553
symbol: JNB_12553
gene_biotype: protein_coding
description:
  Putative ATP/GTP-binding protein; COG1764 Predicted redox protein, regulator of disulfide bond formation.


ensembl_gene_id: JNB_12558
symbol: JNB_12558
gene_biotype: protein_coding
description:
  Putative methyltransferase, S-Adenosyl-L-methionine (SAM)-MTase protein; COG0500 SAM-dependent methyltransferases.


ensembl_gene_id: JNB_12598
symbol: JNB_12598
gene_biotype: protein_coding
description:
  Putative oxidoreductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: JNB_12633
symbol: JNB_12633
gene_biotype: protein_coding
description:
  Bifunctional acetyltransferase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.


ensembl_gene_id: JNB_12693
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: JNB_12698
symbol: JNB_12698
gene_biotype: protein_coding
description:
  Putative ferric uptake regulator; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.


ensembl_gene_id: JNB_12713
symbol: JNB_12713
gene_biotype: protein_coding
description:
  Putative lipase; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.


ensembl_gene_id: JNB_12773
symbol: whiB-3
gene_biotype: protein_coding
description:
  Probable transcriptional regulatory protein whib-like; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: JNB_12788
symbol: JNB_12788
gene_biotype: protein_coding
description:
  Base-excision DNA repair protein; COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.


ensembl_gene_id: JNB_12988
symbol: JNB_12988
gene_biotype: protein_coding
description:
  Putative magnesium or manganese-dependent protein phosphatase; COG0631 Serine/threonine protein phosphatase.


ensembl_gene_id: JNB_13003
symbol: JNB_13003
gene_biotype: protein_coding
description:
  Putative transporter substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: JNB_13083
symbol: JNB_13083
gene_biotype: protein_coding
description:
  Putative transmembrane transport protein; COG0559 Branched-chain amino acid ABC-type transport system, permease components.


ensembl_gene_id: JNB_13118
symbol: JNB_13118
gene_biotype: protein_coding
description:
  Putative short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: JNB_13163
symbol: JNB_13163
gene_biotype: protein_coding
description:
  UDP-glucose:sterol glucosyltransferase; COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.


ensembl_gene_id: JNB_13198
symbol: JNB_13198
gene_biotype: protein_coding
description:
  Putative FtsW/RodA/SpoVE family cell cycle protein; COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.


ensembl_gene_id: JNB_13208
symbol: JNB_13208
gene_biotype: protein_coding
description:
  Tyrosine protein kinase:Serine/threonine protein kinase:PASTA; COG0515 Serine/threonine protein kinase.


ensembl_gene_id: JNB_13248
symbol: JNB_13248
gene_biotype: protein_coding
description:
  Probable peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: JNB_13273
symbol: JNB_13273
gene_biotype: protein_coding
description:
  Chromosome replication initiation inhibitor protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: JNB_13288
symbol: JNB_13288
gene_biotype: protein_coding
description:
  WD40-like Beta Propeller protein; COG0823 Periplasmic component of the Tol biopolymer transport system.


ensembl_gene_id: JNB_13318
symbol: gyrA
gene_biotype: protein_coding
description:
  Putative DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: JNB_13323
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: JNB_13358
symbol: JNB_13358
gene_biotype: protein_coding
description:
  Putative lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: JNB_13368
symbol: JNB_13368
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.


ensembl_gene_id: JNB_13373
symbol: JNB_13373
gene_biotype: protein_coding
description:
  Putative integral membrane protein; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.


ensembl_gene_id: JNB_13388
symbol: JNB_13388
gene_biotype: protein_coding
description:
  Hypothetical protein; COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.


ensembl_gene_id: JNB_13393
symbol: recF
gene_biotype: protein_coding
description:
  Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: JNB_13403
symbol: JNB_13403
gene_biotype: protein_coding
description:
  DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of  [...]


ensembl_gene_id: JNB_13408
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: JNB_13418
symbol: JNB_13418
gene_biotype: protein_coding
description:
  Ribonuclease P protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: JNB_13423
symbol: JNB_13423
gene_biotype: protein_coding
description:
  Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: JNB_13428
symbol: JNB_13428
gene_biotype: protein_coding
description:
  Putative inner membrane protein translocase component YidC; COG0706 Preprotein translocase subunit YidC.


ensembl_gene_id: JNB_13438
symbol: rsmG
gene_biotype: protein_coding
description:
  Glucose-inhibited division protein B; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: JNB_13448
symbol: JNB_13448
gene_biotype: protein_coding
description:
  Putative ParB-like protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.


ensembl_gene_id: JNB_13493
symbol: JNB_13493
gene_biotype: protein_coding
description:
  COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: JNB_13553
symbol: JNB_13553
gene_biotype: protein_coding
description:
  Fibronectin-related protein; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).


ensembl_gene_id: JNB_13578
symbol: JNB_13578
gene_biotype: protein_coding
description:
  Putative transcriptional regulator PadR-like family protein; COG1695 Predicted transcriptional regulators.


ensembl_gene_id: JNB_13613
symbol: rpsR
gene_biotype: protein_coding
description:
  30S ribosomal protein S18-2; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: JNB_13633
symbol: radA
gene_biotype: protein_coding
description:
  Putative DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: JNB_13638
symbol: disA
gene_biotype: protein_coding
description:
  Putative DNA-binding protein; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process.


ensembl_gene_id: JNB_13653
symbol: JNB_13653
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1246 N-acetylglutamate synthase and related acetyltransferases; Belongs to the acetyltransferase family.


ensembl_gene_id: JNB_13668
symbol: JNB_13668
gene_biotype: protein_coding
description:
  Putative ATP-dependent Clp protease; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.


ensembl_gene_id: JNB_13718
symbol: ku
gene_biotype: protein_coding
description:
  Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: JNB_13818
symbol: iolG
gene_biotype: protein_coding
description:
  Putative myo-inositol dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).


ensembl_gene_id: JNB_13833
symbol: JNB_13833
gene_biotype: protein_coding
description:
  Oxidoreductase with transcriptional repressor domain; COG0673 Predicted dehydrogenases and related proteins.


ensembl_gene_id: JNB_13848
symbol: JNB_13848
gene_biotype: protein_coding
description:
  Putative transport system integral membrane protein; COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: JNB_13853
symbol: JNB_13853
gene_biotype: protein_coding
description:
  Putative transport system integral membrane protein; COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: JNB_13878
symbol: JNB_13878
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; COG3845 ABC-type uncharacterized transport systems, ATPase components.


ensembl_gene_id: JNB_13883
symbol: JNB_13883
gene_biotype: protein_coding
description:
  COG1079 Uncharacterized ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: JNB_13893
symbol: JNB_13893
gene_biotype: protein_coding
description:
  Basic membrane lipoprotein; COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.


ensembl_gene_id: JNB_13903
symbol: JNB_13903
gene_biotype: protein_coding
description:
  Putative N-ethylammeline chlorohydrolase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.


ensembl_gene_id: JNB_13908
symbol: JNB_13908
gene_biotype: protein_coding
description:
  Methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1-phosphate. Involved in the breakdown of S-methyl-5'-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine.


ensembl_gene_id: JNB_13948
symbol: JNB_13948
gene_biotype: protein_coding
description:
  Putative replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: JNB_13998
symbol: JNB_13998
gene_biotype: protein_coding
description:
  COG5013 Nitrate reductase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: JNB_14018
symbol: JNB_14018
gene_biotype: protein_coding
description:
  COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_14023
symbol: JNB_14023
gene_biotype: protein_coding
description:
  Possible two component system response sensor kinase membrane-associated protein PhoR; COG0642 Signal transduction histidine kinase.


ensembl_gene_id: JNB_14028
symbol: JNB_14028
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family protein; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).


ensembl_gene_id: JNB_14043
symbol: edd
gene_biotype: protein_coding
description:
  Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.


ensembl_gene_id: JNB_14083
symbol: JNB_14083
gene_biotype: protein_coding
description:
  Putative iron-sulfur protein; COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain.


ensembl_gene_id: JNB_14093
symbol: JNB_14093
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: JNB_14098
symbol: JNB_14098
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: JNB_14158
symbol: azoR
gene_biotype: protein_coding
description:
  Acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: JNB_14193
symbol: pxpA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: JNB_14233
symbol: idi
gene_biotype: protein_coding
description:
  Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).


ensembl_gene_id: JNB_14268
symbol: JNB_14268
gene_biotype: protein_coding
description:
  Glycosyl transferase, group 2 family protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.


ensembl_gene_id: JNB_14288
symbol: JNB_14288
gene_biotype: protein_coding
description:
  Putative two component response regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_14343
symbol: JNB_14343
gene_biotype: protein_coding
description:
  Putative sigma factor; COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.


ensembl_gene_id: JNB_14398
symbol: JNB_14398
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.


ensembl_gene_id: JNB_14463
symbol: JNB_14463
gene_biotype: protein_coding
description:
  COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: JNB_14483
symbol: kynA
gene_biotype: protein_coding
description:
  Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.


ensembl_gene_id: JNB_14488
symbol: JNB_14488
gene_biotype: protein_coding
description:
  Thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: JNB_14503
symbol: JNB_14503
gene_biotype: protein_coding
description:
  Putative N-acetyl-glucosamine catabolism protein; COG0647 Predicted sugar phosphatases of the HAD superfamily; Belongs to the HAD-like hydrolase superfamily.


ensembl_gene_id: JNB_14508
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: JNB_14518
symbol: JNB_14518
gene_biotype: protein_coding
description:
  Putative regulatory protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_14533
symbol: JNB_14533
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: JNB_14538
symbol: JNB_14538
gene_biotype: protein_coding
description:
  Putative thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.


ensembl_gene_id: JNB_14608
symbol: JNB_14608
gene_biotype: protein_coding
description:
  Putative sigma factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family.


ensembl_gene_id: JNB_14613
symbol: nadE
gene_biotype: protein_coding
description:
  NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: JNB_14803
symbol: JNB_14803
gene_biotype: protein_coding
description:
  Putative ABC transporter ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.


ensembl_gene_id: JNB_14838
symbol: JNB_14838
gene_biotype: protein_coding
description:
  Putative integral membrane sugar transport protein; COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: JNB_14888
symbol: JNB_14888
gene_biotype: protein_coding
description:
  PpiB; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: JNB_14903
symbol: JNB_14903
gene_biotype: protein_coding
description:
  Putative oxidoreductase (putative secreted protein); COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor.


ensembl_gene_id: JNB_14923
symbol: JNB_14923
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: JNB_14933
symbol: JNB_14933
gene_biotype: protein_coding
description:
  Putative quinone oxidoreductase; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: JNB_14968
symbol: JNB_14968
gene_biotype: protein_coding
description:
  Putative 2,5-diketo-D-gluconic acid reductase; COG0656 Aldo/keto reductases, related to diketogulonate reductase.


ensembl_gene_id: JNB_14998
symbol: JNB_14998
gene_biotype: protein_coding
description:
  SigG; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: JNB_15128
symbol: JNB_15128
gene_biotype: protein_coding
description:
  Putative two component system response regulator; COG4565 Response regulator of citrate/malate metabolism.


ensembl_gene_id: JNB_15133
symbol: JNB_15133
gene_biotype: protein_coding
description:
  Putative two component system histidine kinase; COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism.


ensembl_gene_id: JNB_15143
symbol: JNB_15143
gene_biotype: protein_coding
description:
  Putative integral membrane protein; COG0609 ABC-type Fe3+-siderophore transport system, permease component.


ensembl_gene_id: JNB_15158
symbol: JNB_15158
gene_biotype: protein_coding
description:
  Ribonuclease activity regulator protein RraA; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.


ensembl_gene_id: JNB_15198
symbol: JNB_15198
gene_biotype: protein_coding
description:
  Putative amino acid hydrolase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: JNB_15238
symbol: JNB_15238
gene_biotype: protein_coding
description:
  Endopeptidase; Cell wall lytic activity; COG3409 Putative peptidoglycan-binding domain-containing protein.


ensembl_gene_id: JNB_15298
symbol: JNB_15298
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold:Esterase/lipase/thioesterase, active site protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: JNB_15378
symbol: grpE
gene_biotype: protein_coding
description:
  Heat shock protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depen [...]


ensembl_gene_id: JNB_15403
symbol: JNB_15403
gene_biotype: protein_coding
description:
  Multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter; COG1129 ABC-type sugar transport system, ATPase component.


ensembl_gene_id: JNB_15408
symbol: JNB_15408
gene_biotype: protein_coding
description:
  L-arabinose ABC transporter, permease protein; COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: JNB_15413
symbol: JNB_15413
gene_biotype: protein_coding
description:
  Multiple sugar-binding periplasmic receptor; COG4213 ABC-type xylose transport system, periplasmic component.


ensembl_gene_id: JNB_15423
symbol: JNB_15423
gene_biotype: protein_coding
description:
  ABC sugar transporter, periplasmic ligand binding protein; COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: JNB_15428
symbol: JNB_15428
gene_biotype: protein_coding
description:
  Probable ABC transporter permease protein; COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: JNB_15438
symbol: JNB_15438
gene_biotype: protein_coding
description:
  Mandelate racemase/muconate lactonizing enzyme family protein; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.


ensembl_gene_id: JNB_15453
symbol: JNB_15453
gene_biotype: protein_coding
description:
  Probable starvation sensing protein; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.


ensembl_gene_id: JNB_15478
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent protease ATP-binding subunit; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: JNB_15493
symbol: JNB_15493
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase).


ensembl_gene_id: JNB_15498
symbol: JNB_15498
gene_biotype: protein_coding
description:
  Aminoglycosides/tetracycline-transport integral membrane protein; COG0477 Permeases of the major facilitator superfamily.


ensembl_gene_id: JNB_15528
symbol: JNB_15528
gene_biotype: protein_coding
description:
  Putative lipase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: JNB_15538
symbol: JNB_15538
gene_biotype: protein_coding
description:
  COG0300 Short-chain dehydrogenases of various substrate specificities; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: JNB_15543
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: JNB_15588
symbol: JNB_15588
gene_biotype: protein_coding
description:
  Two-component system, regulatory protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_15603
symbol: JNB_15603
gene_biotype: protein_coding
description:
  Conserved membrane protein (DedA family protein); COG0586 Uncharacterized membrane-associated protein.


ensembl_gene_id: JNB_15628
symbol: JNB_15628
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_15653
symbol: JNB_15653
gene_biotype: protein_coding
description:
  Hypothetical protein; COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.


ensembl_gene_id: JNB_15658
symbol: JNB_15658
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: JNB_15663
symbol: JNB_15663
gene_biotype: protein_coding
description:
  Ketose-bisphosphate aldolase, class-II:Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.


ensembl_gene_id: JNB_15673
symbol: JNB_15673
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: JNB_15678
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: JNB_15693
symbol: purD
gene_biotype: protein_coding
description:
  Putative phosphoribosylglycinamide synthetase; COG0151 Phosphoribosylamine-glycine ligase; Belongs to the GARS family.


ensembl_gene_id: JNB_15718
symbol: JNB_15718
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.


ensembl_gene_id: JNB_15743
symbol: hemH
gene_biotype: protein_coding
description:
  COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; Belongs to the SAICAR synthetase family.


ensembl_gene_id: JNB_15758
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: JNB_15783
symbol: JNB_15783
gene_biotype: protein_coding
description:
  COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: JNB_15833
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: JNB_15848
symbol: JNB_15848
gene_biotype: protein_coding
description:
  Transport-protein, putative permease for cytosine/purines; COG1457 Purine-cytosine permease and related proteins; Belongs to the purine-cytosine permease (2.A.39) family.


ensembl_gene_id: JNB_15858
symbol: JNB_15858
gene_biotype: protein_coding
description:
  Putative valine dehydrogenase (NADP+); COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: JNB_15883
symbol: fgd
gene_biotype: protein_coding
description:
  Putative F420-dependent glucose-6-phosphate dehydrogenase; Catalyzes the coenzyme F420-dependent oxidation of glucose 6- phosphate (G6P) to 6-phosphogluconolactone.


ensembl_gene_id: JNB_15903
symbol: JNB_15903
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: JNB_15948
symbol: JNB_15948
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulphide oxidoreductase; COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: JNB_15968
symbol: JNB_15968
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family protein; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: JNB_15998
symbol: JNB_15998
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: JNB_16023
symbol: JNB_16023
gene_biotype: protein_coding
description:
  Putative RNA polymerase sigma factor (ECF family); COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: JNB_16188
symbol: pstB
gene_biotype: protein_coding
description:
  Putative phosphate transport ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: JNB_16203
symbol: JNB_16203
gene_biotype: protein_coding
description:
  Putative phosphate transport system permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: JNB_16208
symbol: JNB_16208
gene_biotype: protein_coding
description:
  Phosphate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: JNB_16234
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: JNB_16244
symbol: JNB_16244
gene_biotype: protein_coding
description:
  Putative peptidoglycan pentaglycine interpeptide biosynthesisprotein; COG2348 Uncharacterized protein involved in methicillin resistance.


ensembl_gene_id: JNB_16259
symbol: mshD
gene_biotype: protein_coding
description:
  Putative acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.


ensembl_gene_id: JNB_16264
symbol: JNB_16264
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: JNB_16294
symbol: JNB_16294
gene_biotype: protein_coding
description:
  Putative iron uptake regulatory protein; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.


ensembl_gene_id: JNB_16299
symbol: JNB_16299
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0354 Predicted aminomethyltransferase related to GcvT; Belongs to the GcvT family.


ensembl_gene_id: JNB_16329
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: JNB_16349
symbol: mshA
gene_biotype: protein_coding
description:
  Putative glycosyl transferase; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.


ensembl_gene_id: JNB_16399
symbol: JNB_16399
gene_biotype: protein_coding
description:
  Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.


ensembl_gene_id: JNB_16404
symbol: JNB_16404
gene_biotype: protein_coding
description:
  Putative oxidoreductase; COG4221 Short-chain alcohol dehydrogenase of unknown specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: JNB_16409
symbol: ispF
gene_biotype: protein_coding
description:
  Putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: JNB_16429
symbol: JNB_16429
gene_biotype: protein_coding
description:
  Putative tRNA/rRNA methyltransferase; COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: JNB_16454
symbol: JNB_16454
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_16539
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: JNB_16569
symbol: JNB_16569
gene_biotype: protein_coding
description:
  Putative arsenate reductase; COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: JNB_16609
symbol: groEL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: JNB_16619
symbol: JNB_16619
gene_biotype: protein_coding
description:
  Putative ABC transporter integral membrane protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: JNB_16689
symbol: JNB_16689
gene_biotype: protein_coding
description:
  Putative hydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.


ensembl_gene_id: JNB_16754
symbol: JNB_16754
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: JNB_16769
symbol: JNB_16769
gene_biotype: protein_coding
description:
  Iron-dependent repressor, DxtR metalloregulatory family protein; COG1321 Mn-dependent transcriptional regulator.


ensembl_gene_id: JNB_16779
symbol: JNB_16779
gene_biotype: protein_coding
description:
  Protein containing cell-wall hydrolase domain; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).


ensembl_gene_id: JNB_16794
symbol: JNB_16794
gene_biotype: protein_coding
description:
  DSBA oxidoreductase; COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.


ensembl_gene_id: JNB_16861
symbol: deaD
gene_biotype: protein_coding
description:
  ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.


ensembl_gene_id: JNB_16883
symbol: JNB_16883
gene_biotype: protein_coding
description:
  Cell volume regulation protein CvrA; COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain.


ensembl_gene_id: JNB_16903
symbol: JNB_16903
gene_biotype: protein_coding
description:
  Molybdopterin binding domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: JNB_16908
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: JNB_16958
symbol: JNB_16958
gene_biotype: protein_coding
description:
  Putative integral membrane protein; COG1928 Dolichyl-phosphate-mannose--protein O-mannosyl transferase.


ensembl_gene_id: JNB_16963
symbol: rsmI
gene_biotype: protein_coding
description:
  Putative tetrapyrrole methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: JNB_17043
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: JNB_17058
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: JNB_17068
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: JNB_17073
symbol: JNB_17073
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding subunit; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.


ensembl_gene_id: JNB_17088
symbol: JNB_17088
gene_biotype: protein_coding
description:
  Putative trans-aconitate methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.


ensembl_gene_id: JNB_17123
symbol: glmU
gene_biotype: protein_coding
description:
  Putative UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: JNB_17128
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: JNB_17143
symbol: rplY
gene_biotype: protein_coding
description:
  Putative ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: JNB_17148
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: JNB_17153
symbol: mfd
gene_biotype: protein_coding
description:
  Putative transcriptional-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: JNB_17178
symbol: psuG
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.


ensembl_gene_id: JNB_17183
symbol: JNB_17183
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.


ensembl_gene_id: JNB_17188
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: JNB_17253
symbol: JNB_17253
gene_biotype: protein_coding
description:
  Possible transcriptional regulatory protein (probably tetr-family protein); COG1309 Transcriptional regulator.


ensembl_gene_id: JNB_17278
symbol: msrA
gene_biotype: protein_coding
description:
  Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: JNB_17338
symbol: JNB_17338
gene_biotype: protein_coding
description:
  Putative ABC transporter membrane protein; COG0842 ABC-type multidrug transport system, permease component.


ensembl_gene_id: JNB_17348
symbol: greA
gene_biotype: protein_coding
description:
  Putative transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: JNB_17358
symbol: mca
gene_biotype: protein_coding
description:
  Hypothetical protein; A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S- conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics; Belongs to the MshB deacetylase family. Mca subfamily.


ensembl_gene_id: JNB_17378
symbol: JNB_17378
gene_biotype: protein_coding
description:
  Putative ATP-binding protein; COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH.


ensembl_gene_id: JNB_17403
symbol: glmS
gene_biotype: protein_coding
description:
  D-fructose-6-phosphate amidotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: JNB_17408
symbol: acpS
gene_biotype: protein_coding
description:
  4'-phosphopantetheinyl transferase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: JNB_17413
symbol: nnrD
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.


ensembl_gene_id: JNB_17418
symbol: JNB_17418
gene_biotype: protein_coding
description:
  Putative alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: JNB_17433
symbol: JNB_17433
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.


ensembl_gene_id: JNB_17443
symbol: tsaD
gene_biotype: protein_coding
description:
  Putative O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: JNB_17463
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: JNB_17483
symbol: groES
gene_biotype: protein_coding
description:
  Co-chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: JNB_17528
symbol: whiB-4
gene_biotype: protein_coding
description:
  Putative transcription regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: JNB_17533
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: JNB_17578
symbol: JNB_17578
gene_biotype: protein_coding
description:
  Putative ABC transporter transmembrane protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: JNB_17598
symbol: guaA
gene_biotype: protein_coding
description:
  Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.


ensembl_gene_id: JNB_17638
symbol: JNB_17638
gene_biotype: protein_coding
description:
  Putative two-component system sensor kinase; COG1983 Putative stress-responsive transcriptional regulator.


ensembl_gene_id: JNB_17653
symbol: JNB_17653
gene_biotype: protein_coding
description:
  Quinone oxidoreductase, putative; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: JNB_17658
symbol: JNB_17658
gene_biotype: protein_coding
description:
  ModC; COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_17663
symbol: JNB_17663
gene_biotype: protein_coding
description:
  Probable molbdenum-transport integral membrane protein abctransporter modb; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: JNB_17668
symbol: JNB_17668
gene_biotype: protein_coding
description:
  Probable molybdate-binding lipoprotein moda; COG0725 ABC-type molybdate transport system, periplasmic component.


ensembl_gene_id: JNB_17718
symbol: JNB_17718
gene_biotype: protein_coding
description:
  LysM domain/M23/M37 peptidase domain protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).


ensembl_gene_id: JNB_17733
symbol: JNB_17733
gene_biotype: protein_coding
description:
  Putative secreted lipase; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.


ensembl_gene_id: JNB_17738
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: JNB_17743
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: JNB_17768
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: JNB_17783
symbol: JNB_17783
gene_biotype: protein_coding
description:
  Putative ABC transporter solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: JNB_17788
symbol: JNB_17788
gene_biotype: protein_coding
description:
  Putative ABC transporter permease protein; COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: JNB_17793
symbol: JNB_17793
gene_biotype: protein_coding
description:
  Putative ABC transporter integral membrane permease; COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: JNB_17803
symbol: purH
gene_biotype: protein_coding
description:
  Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful).


ensembl_gene_id: JNB_17813
symbol: JNB_17813
gene_biotype: protein_coding
description:
  Cyanuric acid amidohydrolase; Responsible for the hydrolysis of barbituric acid (2,4,6- trihydroxy-1,3-pyrimidine), an intermediate in the oxidative catabolism of pyrimidines. Catalyzes the hydrolytic opening of the pyrimidine ring of barbituric acid to yield ureidomalonic acid; Belongs to the cyclic amide hydrolase (CyAH) family.


ensembl_gene_id: JNB_17888
symbol: JNB_17888
gene_biotype: protein_coding
description:
  Probable dehydrogenase/oxidase; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.


ensembl_gene_id: JNB_17893
symbol: JNB_17893
gene_biotype: protein_coding
description:
  Probable 2Fe-2S ferredoxin; COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.


ensembl_gene_id: JNB_17908
symbol: JNB_17908
gene_biotype: protein_coding
description:
  Putative ROK-family transcriptional regulatory protein; COG1940 Transcriptional regulator/sugar kinase.


ensembl_gene_id: JNB_17943
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: JNB_17953
symbol: gshB
gene_biotype: protein_coding
description:
  COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: JNB_17978
symbol: mdh
gene_biotype: protein_coding
description:
  Mdh; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.


ensembl_gene_id: JNB_17988
symbol: JNB_17988
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.


ensembl_gene_id: JNB_18003
symbol: JNB_18003
gene_biotype: protein_coding
description:
  Aquaporin Z; COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: JNB_18023
symbol: JNB_18023
gene_biotype: protein_coding
description:
  O-antigen biosynthesis protein; COG0381 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: JNB_18048
symbol: JNB_18048
gene_biotype: protein_coding
description:
  Probable glycosyl transferase transmembrane protein; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.


ensembl_gene_id: JNB_18053
symbol: JNB_18053
gene_biotype: protein_coding
description:
  Putative aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: JNB_18063
symbol: JNB_18063
gene_biotype: protein_coding
description:
  Cell surface polysaccharide biosynthesis / Chain length determinant protein; COG3944 Capsular polysaccharide biosynthesis protein.


ensembl_gene_id: JNB_18068
symbol: JNB_18068
gene_biotype: protein_coding
description:
  COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: JNB_18088
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: JNB_18153
symbol: add
gene_biotype: protein_coding
description:
  COG1816 Adenosine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.


ensembl_gene_id: JNB_18218
symbol: JNB_18218
gene_biotype: protein_coding
description:
  Putative deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.


ensembl_gene_id: JNB_18228
symbol: JNB_18228
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family, putative; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: JNB_18248
symbol: JNB_18248
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: JNB_18253
symbol: fbpC-2
gene_biotype: protein_coding
description:
  ATP binding protein of ABC transporter-like protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.


ensembl_gene_id: JNB_18258
symbol: JNB_18258
gene_biotype: protein_coding
description:
  Possible permease of ABC transporter; COG1177 ABC-type spermidine/putrescine transport system, permease component II.


ensembl_gene_id: JNB_18263
symbol: JNB_18263
gene_biotype: protein_coding
description:
  Possible permease protein of ABC transporter system; COG4132 ABC-type uncharacterized transport system, permease component.


ensembl_gene_id: JNB_18268
symbol: JNB_18268
gene_biotype: protein_coding
description:
  Possible solute binding protein of ABC transporter system; COG1840 ABC-type Fe3+ transport system, periplasmic component.


ensembl_gene_id: JNB_18363
symbol: JNB_18363
gene_biotype: protein_coding
description:
  Putative secreted protein; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.


ensembl_gene_id: JNB_18393
symbol: JNB_18393
gene_biotype: protein_coding
description:
  Hypothetical protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: JNB_18403
symbol: JNB_18403
gene_biotype: protein_coding
description:
  Putative sodium/proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: JNB_18463
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase ATPase subunit PurK; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: JNB_18468
symbol: purE
gene_biotype: protein_coding
description:
  1-(5-Phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR)carboxylase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: JNB_18513
symbol: JNB_18513
gene_biotype: protein_coding
description:
  Putative ABC transporter membrane component; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.


ensembl_gene_id: JNB_18518
symbol: JNB_18518
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.


ensembl_gene_id: JNB_18538
symbol: JNB_18538
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.


ensembl_gene_id: JNB_18548
symbol: JNB_18548
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: JNB_18558
symbol: JNB_18558
gene_biotype: protein_coding
description:
  COG0381 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: JNB_18583
symbol: JNB_18583
gene_biotype: protein_coding
description:
  Putative UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: JNB_18608
symbol: JNB_18608
gene_biotype: protein_coding
description:
  Putative 3-oxoadipate CoA-transferase subunit A; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.


ensembl_gene_id: JNB_18623
symbol: JNB_18623
gene_biotype: protein_coding
description:
  Possible chromosome condensation protein; COG1741 Pirin-related protein; Belongs to the pirin family.


ensembl_gene_id: JNB_18633
symbol: JNB_18633
gene_biotype: protein_coding
description:
  Inositol monophosphatase family protein; COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family.


ensembl_gene_id: JNB_18663
symbol: JNB_18663
gene_biotype: protein_coding
description:
  COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.


ensembl_gene_id: JNB_18683
symbol: JNB_18683
gene_biotype: protein_coding
description:
  Dolichol-phosphate mannosyltransferase, fused to C-terminaluncharacterized domain; COG0463 Glycosyltransferases involved in cell wall biogenesis.


ensembl_gene_id: JNB_18693
symbol: JNB_18693
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: JNB_18698
symbol: JNB_18698
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis O-methyltransferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.


ensembl_gene_id: JNB_18738
symbol: whiB-5
gene_biotype: protein_coding
description:
  Putative WhiB-family transcriptional regulator, WhiB protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: JNB_18788
symbol: JNB_18788
gene_biotype: protein_coding
description:
  Probable conserved integral membrane protein; COG2354 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: JNB_18803
symbol: ahcY
gene_biotype: protein_coding
description:
  s-adenosyl-L-homocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: JNB_18873
symbol: JNB_18873
gene_biotype: protein_coding
description:
  Putative membrane protein; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.


ensembl_gene_id: JNB_18888
symbol: JNB_18888
gene_biotype: protein_coding
description:
  Putative beta-N-acetylhexosaminidase; COG1472 Beta-glucosidase-related glycosidases; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: JNB_18933
symbol: hpf
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: JNB_18958
symbol: secA
gene_biotype: protein_coding
description:
  Translocase; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: JNB_19018
symbol: JNB_19018
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type).


ensembl_gene_id: JNB_19038
symbol: whiB-6
gene_biotype: protein_coding
description:
  Hypothetical protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: JNB_19048
symbol: JNB_19048
gene_biotype: protein_coding
description:
  Putative glycosyl hydrolase (putative secreted protein); COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: JNB_19078
symbol: JNB_19078
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.


ensembl_gene_id: JNB_19083
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: JNB_19103
symbol: JNB_19103
gene_biotype: protein_coding
description:
  Putative integral membrane protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: JNB_19108
symbol: JNB_19108
gene_biotype: protein_coding
description:
  Putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.


ensembl_gene_id: JNB_19158
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: JNB_19178
symbol: JNB_19178
gene_biotype: protein_coding
description:
  Hypothetical protein; COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID.


ensembl_gene_id: JNB_19198
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: JNB_19203
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: JNB_19208
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: JNB_19228
symbol: JNB_19228
gene_biotype: protein_coding
description:
  COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: JNB_19268
symbol: JNB_19268
gene_biotype: protein_coding
description:
  COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].


ensembl_gene_id: JNB_19278
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: JNB_19298
symbol: JNB_19298
gene_biotype: protein_coding
description:
  Probable D-3-phosphoglycerate dehydrogenase; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: JNB_19303
symbol: JNB_19303
gene_biotype: protein_coding
description:
  DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: JNB_19313
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily.


ensembl_gene_id: JNB_19333
symbol: JNB_19333
gene_biotype: protein_coding
description:
  Putative dehydrogenase protein; COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.


ensembl_gene_id: JNB_19393
symbol: JNB_19393
gene_biotype: protein_coding
description:
  Putative 2-isopropylmalate synthase; COG0119 Isopropylmalate/homocitrate/citramalate synthases; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: JNB_19433
symbol: JNB_19433
gene_biotype: protein_coding
description:
  Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).


ensembl_gene_id: JNB_19463
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: JNB_19478
symbol: leuC
gene_biotype: protein_coding
description:
  Isopropylmalate isomerase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: JNB_19483
symbol: leuD
gene_biotype: protein_coding
description:
  Isopropylmalate isomerase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: JNB_19488
symbol: JNB_19488
gene_biotype: protein_coding
description:
  COG0776 Bacterial nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: JNB_19513
symbol: gpsA
gene_biotype: protein_coding
description:
  Putative glycerol-3-phosphate dehydrogenase, NAD(P)H-dependent; COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: JNB_19518
symbol: JNB_19518
gene_biotype: protein_coding
description:
  Putative L,L-Cystathionine gamma-Lyase; COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.


ensembl_gene_id: JNB_19538
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: JNB_19568
symbol: coaD
gene_biotype: protein_coding
description:
  Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: JNB_19583
symbol: rncS
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: JNB_19588
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: JNB_19613
symbol: smc
gene_biotype: protein_coding
description:
  Putative chromosome associated protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: JNB_19633
symbol: ftsY
gene_biotype: protein_coding
description:
  Putative prokaryotic docking protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: JNB_19668
symbol: glnD
gene_biotype: protein_coding
description:
  PII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.


ensembl_gene_id: JNB_19673
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: JNB_19678
symbol: JNB_19678
gene_biotype: protein_coding
description:
  Putative esterase/lipase YbfF; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: JNB_19708
symbol: JNB_19708
gene_biotype: protein_coding
description:
  Putative sulfate ABC transporter permease; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.


ensembl_gene_id: JNB_19718
symbol: cysA
gene_biotype: protein_coding
description:
  Putative sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: JNB_19758
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA-processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: JNB_19763
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA-(guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: JNB_19793
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: JNB_19813
symbol: JNB_19813
gene_biotype: protein_coding
description:
  Hypothetical protein; COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain.


ensembl_gene_id: JNB_19818
symbol: JNB_19818
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.


ensembl_gene_id: JNB_19858
symbol: JNB_19858
gene_biotype: protein_coding
description:
  Probable transcription regulator (lysR family); COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: JNB_19863
symbol: JNB_19863
gene_biotype: protein_coding
description:
  C4-dicarboxylate transporter/malic acid transport protein; COG1275 Tellurite resistance protein and related permeases.


ensembl_gene_id: JNB_19888
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: JNB_19903
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: JNB_19923
symbol: rlmN
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: JNB_19943
symbol: JNB_19943
gene_biotype: protein_coding
description:
  Succinate-semialdehyde dehydrogenase (NAD(P)+); COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: JNB_19963
symbol: JNB_19963
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: JNB_20018
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: JNB_20028
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: JNB_20043
symbol: JNB_20043
gene_biotype: protein_coding
description:
  Hypothetical protein; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.


ensembl_gene_id: JNB_20048
symbol: JNB_20048
gene_biotype: protein_coding
description:
  Hypothetical protein; COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains.


ensembl_gene_id: JNB_20068
symbol: JNB_20068
gene_biotype: protein_coding
description:
  Hypothetical protein; COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase.


ensembl_gene_id: JNB_20088
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: JNB_20118
symbol: cobD-2
gene_biotype: protein_coding
description:
  Putative cobalamin biosynthesis protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: JNB_20123
symbol: JNB_20123
gene_biotype: protein_coding
description:
  Probable bifunctional cobalamin biosynthesis protein cobu:cobinamide kinase + cobinamide phosphate; COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase.


ensembl_gene_id: JNB_20128
symbol: cobS
gene_biotype: protein_coding
description:
  Putative cobalamin (5'-phosphate) synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: JNB_20138
symbol: cobB
gene_biotype: protein_coding
description:
  Cobyrinic acid A,C-diamide synthase, CbiA; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: JNB_20158
symbol: JNB_20158
gene_biotype: protein_coding
description:
  Putative methyltransferase; COG2875 Precorrin-4 methylase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: JNB_20208
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: JNB_20213
symbol: JNB_20213
gene_biotype: protein_coding
description:
  Conserved protein, phosphoglycerate mutase family protein; COG0406 Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: JNB_20228
symbol: JNB_20228
gene_biotype: protein_coding
description:
  Putative thiamine biosynthesis lipoprotein precursor; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: JNB_20243
symbol: JNB_20243
gene_biotype: protein_coding
description:
  Possible peroxidase (Non-Heme peroxidase); COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: JNB_20248
symbol: JNB_20248
gene_biotype: protein_coding
description:
  Zinc-binding oxidoreductase; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: JNB_20263
symbol: JNB_20263
gene_biotype: protein_coding
description:
  Carboxylesterase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: JNB_20283
symbol: JNB_20283
gene_biotype: protein_coding
description:
  Putative oxidoreductase; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.


ensembl_gene_id: JNB_20288
symbol: JNB_20288
gene_biotype: protein_coding
description:
  Putative oxidoreductase with iron-sulfur subunit; COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.


ensembl_gene_id: JNB_20293
symbol: JNB_20293
gene_biotype: protein_coding
description:
  Putative sodium:dicarboxylate symporter; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: JNB_20298
symbol: JNB_20298
gene_biotype: protein_coding
description:
  Putative two-component sensor kinase; COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism.


ensembl_gene_id: JNB_20303
symbol: JNB_20303
gene_biotype: protein_coding
description:
  Putative two-component system response regulator; COG4565 Response regulator of citrate/malate metabolism.


ensembl_gene_id: JNB_20318
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: JNB_20323
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription elongation factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: JNB_20328
symbol: JNB_20328
gene_biotype: protein_coding
description:
  Hypothetical protein; COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination.


ensembl_gene_id: JNB_20333
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: JNB_20338
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: JNB_20343
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: JNB_20438
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: JNB_20453
symbol: obg
gene_biotype: protein_coding
description:
  Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: JNB_20458
symbol: proB
gene_biotype: protein_coding
description:
  Gamma-glutamyl kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: JNB_20478
symbol: pdxY
gene_biotype: protein_coding
description:
  Pyridoxine kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.


ensembl_gene_id: JNB_20483
symbol: proA
gene_biotype: protein_coding
description:
  Putative gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: JNB_20508
symbol: nadD-2
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: JNB_20513
symbol: rsfS
gene_biotype: protein_coding
description:
  Hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: JNB_20518
symbol: JNB_20518
gene_biotype: protein_coding
description:
  Putative phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: JNB_20523
symbol: JNB_20523
gene_biotype: protein_coding
description:
  Hypothetical protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.


ensembl_gene_id: JNB_20528
symbol: JNB_20528
gene_biotype: protein_coding
description:
  COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: JNB_20573
symbol: JNB_20573
gene_biotype: protein_coding
description:
  Putative peptide transport ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: JNB_20578
symbol: JNB_20578
gene_biotype: protein_coding
description:
  Putative peptide transport ATP-binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.


