# geneInfo

ensembl_gene_id: RPE_3019
symbol: RPE_3019
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpd:RPD_0337 chemotaxis sensory transducer.


ensembl_gene_id: RPE_3021
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: RPE_3022
symbol: rnc
gene_biotype: protein_coding
description:
  RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: RPE_3023
symbol: RPE_3023
gene_biotype: protein_coding
description:
  Signal peptidase I. Serine peptidase. MEROPS family S26A; KEGG: rpb:RPB_2611 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S26 family.


ensembl_gene_id: RPE_3024
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: RPE_3025
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: RPE_3026
symbol: RPE_3026
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: RPE_3027
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: RPE_3030
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: RPE_3031
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: RPE_3032
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: RPE_3033
symbol: RPE_3033
gene_biotype: protein_coding
description:
  Transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rpc:RPC_2628 transcriptional regulator, BadM/Rrf2 family.


ensembl_gene_id: RPE_3034
symbol: RPE_3034
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2627 UbiE/COQ5 methyltransferase.


ensembl_gene_id: RPE_3036
symbol: RPE_3036
gene_biotype: protein_coding
description:
  PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpc:RPC_2625 dimethylmenaquinone methyltransferase.


ensembl_gene_id: RPE_3037
symbol: RPE_3037
gene_biotype: protein_coding
description:
  TIGRFAM: conserved hypothetical protein; PFAM: Allophanate hydrolase subunit 1; KEGG: rpc:RPC_2624 hypothetical protein.


ensembl_gene_id: RPE_3038
symbol: RPE_3038
gene_biotype: protein_coding
description:
  TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: rpc:RPC_2623 allophanate hydrolase subunit 2.


ensembl_gene_id: RPE_3039
symbol: pxpA
gene_biotype: protein_coding
description:
  LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: RPE_3040
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: RPE_3045
symbol: prfC
gene_biotype: protein_coding
description:
  Bacterial peptide chain release factor 3 (bRF-3); Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: RPE_3051
symbol: RPE_3051
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_2332 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3052
symbol: RPE_3052
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpc:RPC_2952 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3055
symbol: RPE_3055
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2275 putative branched-chain amino acid transport system ATP-binding protein.


ensembl_gene_id: RPE_3058
symbol: RPE_3058
gene_biotype: protein_coding
description:
  TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: rpa:RPA2272 hypothetical protein; Belongs to the ArsC family.


ensembl_gene_id: RPE_3060
symbol: RPE_3060
gene_biotype: protein_coding
description:
  Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: ret:RHE_CH03136 hypothetical protein.


ensembl_gene_id: RPE_3067
symbol: RPE_3067
gene_biotype: protein_coding
description:
  TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpa:RPA4459 putative flavocytochrome c sulfide dehydrogenase, flavoprotein subunit.


ensembl_gene_id: RPE_3068
symbol: RPE_3068
gene_biotype: protein_coding
description:
  Sulfide dehydrogenase (flavoprotein); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_4248 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: RPE_3070
symbol: RPE_3070
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: rpd:RPD_4250 protein of unknown function DUF395, YeeE/YedE.


ensembl_gene_id: RPE_3071
symbol: RPE_3071
gene_biotype: protein_coding
description:
  Sulfur dehydrogenase subunit SoxD; PFAM: cytochrome c, class I; KEGG: rpa:RPA4463 possible cytochrome.


ensembl_gene_id: RPE_3072
symbol: RPE_3072
gene_biotype: protein_coding
description:
  Sulfur dehydrogenase subunit SoxC; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rpd:RPD_4252 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_3073
symbol: RPE_3073
gene_biotype: protein_coding
description:
  Sulfate thiol esterase SoxB; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 5'-Nucleotidase domain protein; KEGG: rpb:RPB_4369 twin-arginine translocation pathway signal; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: RPE_3075
symbol: RPE_3075
gene_biotype: protein_coding
description:
  Thiosulfate-binding protein SoxY; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpd:RPD_4255 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_3079
symbol: RPE_3079
gene_biotype: protein_coding
description:
  Thioredoxin-related protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_4375 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_3080
symbol: RPE_3080
gene_biotype: protein_coding
description:
  PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rpd:RPD_4260 cytochrome c biogenesis protein, transmembrane region.


ensembl_gene_id: RPE_3082
symbol: RPE_3082
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: rpd:RPD_4262 regulatory protein, ArsR.


ensembl_gene_id: RPE_3083
symbol: RPE_3083
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: rpb:RPB_4379 protein of unknown function DUF395, YeeE/YedE.


ensembl_gene_id: RPE_3084
symbol: RPE_3084
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpb:RPB_4311 4Fe-4S ferredoxin, iron-sulfur binding.


ensembl_gene_id: RPE_3085
symbol: RPE_3085
gene_biotype: protein_coding
description:
  PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: bbr:BB4314 putative inner membrane transport protein.


ensembl_gene_id: RPE_3087
symbol: RPE_3087
gene_biotype: protein_coding
description:
  PFAM: cytochrome B561; KEGG: rpa:RPA2315 putative nickel-dependent hydrogenase, b-type cytochrome subunit.


ensembl_gene_id: RPE_3090
symbol: RPE_3090
gene_biotype: protein_coding
description:
  Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.


ensembl_gene_id: RPE_3091
symbol: RPE_3091
gene_biotype: protein_coding
description:
  PFAM: Ferritin, Dps family protein; KEGG: rpa:RPA2755 possible DNA-binding stress protein; Belongs to the Dps family.


ensembl_gene_id: RPE_3095
symbol: nosZ
gene_biotype: protein_coding
description:
  Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.


ensembl_gene_id: RPE_3096
symbol: RPE_3096
gene_biotype: protein_coding
description:
  PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: rpb:RPB_3143 periplasmic copper-binding.


ensembl_gene_id: RPE_3100
symbol: RPE_3100
gene_biotype: protein_coding
description:
  ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: RPE_3101
symbol: RPE_3101
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2980 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL.


ensembl_gene_id: RPE_3102
symbol: RPE_3102
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: RPE_3103
symbol: phnN
gene_biotype: protein_coding
description:
  Phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).


ensembl_gene_id: RPE_3104
symbol: RPE_3104
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; KEGG: rpb:RPB_4095 phosphonate metabolism PhnM.


ensembl_gene_id: RPE_3105
symbol: RPE_3105
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_4094 phosphonate C-P lyase system, PhnL; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: RPE_3106
symbol: RPE_3106
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_3829 phosphonate C-P lyase system, PhnK; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: RPE_3107
symbol: RPE_3107
gene_biotype: protein_coding
description:
  Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.


ensembl_gene_id: RPE_3111
symbol: RPE_3111
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rpd:RPD_3824 phosphonate C-P lyase system, transcriptional regulator PhnF.


ensembl_gene_id: RPE_3112
symbol: RPE_3112
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4087 phosphonate uptake transporter.


ensembl_gene_id: RPE_3113
symbol: RPE_3113
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4086 phosphonate uptake transporter.


ensembl_gene_id: RPE_3114
symbol: RPE_3114
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rpb:RPB_4085 phosphonate-binding periplasmic protein.


ensembl_gene_id: RPE_3117
symbol: RPE_3117
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rpc:RPC_4434 phosphonate metabolism PhnM.


ensembl_gene_id: RPE_3119
symbol: minE
gene_biotype: protein_coding
description:
  Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.


ensembl_gene_id: RPE_3120
symbol: RPE_3120
gene_biotype: protein_coding
description:
  TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bja:blr4212 putative cell division inhibitor protein.


ensembl_gene_id: RPE_3121
symbol: minC
gene_biotype: protein_coding
description:
  Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: RPE_3123
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: RPE_3128
symbol: RPE_3128
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: rpd:RPD_2924 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: RPE_3135
symbol: RPE_3135
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_1911 ATPase associated with various cellular activities, AAA_3.


ensembl_gene_id: RPE_3136
symbol: RPE_3136
gene_biotype: protein_coding
description:
  Methanol dehydrogenase, beta subunit; Catalyzes the oxidation of primary alcohols including methanol.


ensembl_gene_id: RPE_3138
symbol: RPE_3138
gene_biotype: protein_coding
description:
  SMART: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_1908 extracellular solute-binding protein, family 3.


ensembl_gene_id: RPE_3141
symbol: RPE_3141
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_1905 putative signal transduction histidine kinase.


ensembl_gene_id: RPE_3142
symbol: RPE_3142
gene_biotype: protein_coding
description:
  PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpc:RPC_1904 two component transcriptional regulator, LuxR family.


ensembl_gene_id: RPE_3145
symbol: RPE_3145
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpa:RPA2128 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: RPE_3146
symbol: RPE_3146
gene_biotype: protein_coding
description:
  PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpa:RPA2127 putative exbB, uptake of enterochelin; tonB-dependent uptake of B colicins.


ensembl_gene_id: RPE_3147
symbol: RPE_3147
gene_biotype: protein_coding
description:
  Heme utilization protein HuvX; PFAM: protein of unknown function DUF1008; KEGG: rpc:RPC_1975 protein of unknown function DUF1008.


ensembl_gene_id: RPE_3148
symbol: RPE_3148
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpc:RPC_1974 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: RPE_3149
symbol: RPE_3149
gene_biotype: protein_coding
description:
  TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_1973 TonB-dependent haem/haemoglobin receptor.


ensembl_gene_id: RPE_3150
symbol: RPE_3150
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: rpc:RPC_1972 NmrA-like.


ensembl_gene_id: RPE_3151
symbol: RPE_3151
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_1971 radical SAM.


ensembl_gene_id: RPE_3154
symbol: RPE_3154
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: rpc:RPC_1968 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: RPE_3155
symbol: hmuV
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.


ensembl_gene_id: RPE_3162
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: RPE_3163
symbol: RPE_3163
gene_biotype: protein_coding
description:
  PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rru:Rru_A1468 phosphate butyryltransferase.


ensembl_gene_id: RPE_3164
symbol: RPE_3164
gene_biotype: protein_coding
description:
  Enoyl-[acyl-carrier-protein] reductase (NADH); PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_1256 enoyl-(acyl carrier protein) reductase.


ensembl_gene_id: RPE_3165
symbol: RPE_3165
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA2052 putative phophinothricin N-acetyltransferase.


ensembl_gene_id: RPE_3166
symbol: RPE_3166
gene_biotype: protein_coding
description:
  PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rpa:RPA2051 putative ornithine decarboxylase.


ensembl_gene_id: RPE_3169
symbol: metE
gene_biotype: protein_coding
description:
  Methionine synthase (B12-independent); Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: RPE_3170
symbol: queH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).


ensembl_gene_id: RPE_3174
symbol: RPE_3174
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rpc:RPC_3514 transcriptional regulator, XRE family.


ensembl_gene_id: RPE_3175
symbol: RPE_3175
gene_biotype: protein_coding
description:
  TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rpc:RPC_3515 ribonucleoside-triphosphate reductase, anaerobic-like.


ensembl_gene_id: RPE_3176
symbol: RPE_3176
gene_biotype: protein_coding
description:
  TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; KEGG: rpc:RPC_3517 ribonucleoside-triphosphate reductase, anaerobic.


ensembl_gene_id: RPE_3183
symbol: RPE_3183
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_3224 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_3184
symbol: metN
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: RPE_3188
symbol: RPE_3188
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpa:RPA2617 possible vanadium nitrogenase associated protein VnfN (U51863).


ensembl_gene_id: RPE_3189
symbol: RPE_3189
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpa:RPA2616 possible nitrogenase iron-molybdenum cofactor biosynthesis protein NifE homolog.


ensembl_gene_id: RPE_3190
symbol: RPE_3190
gene_biotype: protein_coding
description:
  Nitrogenase; PFAM: NifH/frxC-family protein; KEGG: rpa:RPA2615 putative nitrogenase iron protein (nitrogenase component II) (nitrogenase reductase); Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: RPE_3192
symbol: RPE_3192
gene_biotype: protein_coding
description:
  KEGG: rpa:RPA2608 possible sulfonate binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3.


ensembl_gene_id: RPE_3193
symbol: ssuD
gene_biotype: protein_coding
description:
  Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.


ensembl_gene_id: RPE_3194
symbol: RPE_3194
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2611 putative aliphatic sulfonate transport membrane component. permease subunit of an ABC transporter.


ensembl_gene_id: RPE_3195
symbol: ssuB
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.


ensembl_gene_id: RPE_3197
symbol: RPE_3197
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sil:SPO0796 hypothetical protein.


ensembl_gene_id: RPE_3200
symbol: RPE_3200
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: afu:AF2100 acetolactate synthase large subunit.


ensembl_gene_id: RPE_3201
symbol: RPE_3201
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: sme:SMb21530 acetolactate synthase large subunit.


ensembl_gene_id: RPE_3203
symbol: RPE_3203
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase (ADP-forming) beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: ttj:TTHA0538 succinyl-CoA synthetase beta chain.


ensembl_gene_id: RPE_3205
symbol: RPE_3205
gene_biotype: protein_coding
description:
  KEGG: pst:PSPTO2423 ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3.


ensembl_gene_id: RPE_3207
symbol: RPE_3207
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3423 ABC transporter ATP-binding protein.


ensembl_gene_id: RPE_3208
symbol: RPE_3208
gene_biotype: protein_coding
description:
  ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3424 ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3209
symbol: RPE_3209
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bja:bll3425 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3211
symbol: RPE_3211
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bja:bll3426 ABC transporter substrate-binding protein.


ensembl_gene_id: RPE_3212
symbol: RPE_3212
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: eba:ebA2066 putative CoA-transferase protein, (family III); Belongs to the CoA-transferase III family.


ensembl_gene_id: RPE_3213
symbol: RPE_3213
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: eba:ebA2064 large subunit of molybdenum enzyme.


ensembl_gene_id: RPE_3214
symbol: RPE_3214
gene_biotype: protein_coding
description:
  PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA2063 small Fe/S-containing subunit of molybdenum enzyme.


ensembl_gene_id: RPE_3215
symbol: RPE_3215
gene_biotype: protein_coding
description:
  PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: eba:ebA2062 medium FAD-binding subunit of molybdenum enzyme.


ensembl_gene_id: RPE_3216
symbol: RPE_3216
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: eba:ebA2053 hydantoin utilization protein B.


ensembl_gene_id: RPE_3217
symbol: RPE_3217
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: eba:ebA2051 hydantoin utilization protein A.


ensembl_gene_id: RPE_3218
symbol: RPE_3218
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA2050 putative ADP-producing CoA ligase, similar to feruloyl-CoA synthetase.


ensembl_gene_id: RPE_3219
symbol: RPE_3219
gene_biotype: protein_coding
description:
  PFAM: Thiolase; KEGG: eba:ebA2049 putative beta-oxoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RPE_3220
symbol: RPE_3220
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: eba:ebA2047 transcriptional regulator, GntR family.


ensembl_gene_id: RPE_3222
symbol: RPE_3222
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA2055 putative acyl-CoA dehydrogenase.


ensembl_gene_id: RPE_3223
symbol: RPE_3223
gene_biotype: protein_coding
description:
  TIGRFAM: Methylmalonyl-CoA mutase-like; PFAM: cobalamin B12-binding domain protein; KEGG: eba:ebD52 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).


ensembl_gene_id: RPE_3224
symbol: RPE_3224
gene_biotype: protein_coding
description:
  KEGG: eba:ebA2060 methylmalonyl-CoA mutase subunit alpha; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.


ensembl_gene_id: RPE_3225
symbol: RPE_3225
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: eba:ebA2038 fusion of 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RPE_3228
symbol: RPE_3228
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rso:RS02008 probable oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_3229
symbol: RPE_3229
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase, FAD-binding; KEGG: bja:blr3436 hypothetical protein.


ensembl_gene_id: RPE_3233
symbol: RPE_3233
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: mlo:msl7485 hypothetical protein.


ensembl_gene_id: RPE_3240
symbol: RPE_3240
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pae:PA0675 probable sigma-70 factor, ECF subfamily.


ensembl_gene_id: RPE_3253
symbol: RPE_3253
gene_biotype: protein_coding
description:
  T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.


ensembl_gene_id: RPE_3254
symbol: RPE_3254
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_4264 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: RPE_3261
symbol: RPE_3261
gene_biotype: protein_coding
description:
  PFAM: phage integrase family protein; KEGG: dar:Daro_2336 phage integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: RPE_3263
symbol: RPE_3263
gene_biotype: protein_coding
description:
  PFAM: Fmu (Sun) domain protein; KEGG: rpc:RPC_3064 Fmu (Sun); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: RPE_3266
symbol: RPE_3266
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: rpc:RPC_3068 alcohol dehydrogenase, zinc-binding.


ensembl_gene_id: RPE_3268
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: RPE_3271
symbol: RPE_3271
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_3075 major facilitator superfamily MFS_1.


ensembl_gene_id: RPE_3272
symbol: rlmE
gene_biotype: protein_coding
description:
  Ribosomal RNA methyltransferase RrmJ/FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: RPE_3275
symbol: RPE_3275
gene_biotype: protein_coding
description:
  Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)))/Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: rpb:RPB_2497 bifunctional oxaloacetate decarboxylating malate dehydrogenase (NADP+)/phosphate acetyltransferase.


ensembl_gene_id: RPE_3276
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: RPE_3277
symbol: selO
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: RPE_3278
symbol: rnd
gene_biotype: protein_coding
description:
  Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.


ensembl_gene_id: RPE_3281
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: RPE_3282
symbol: RPE_3282
gene_biotype: protein_coding
description:
  Regulatory inactivation of DnaA Hda protein; KEGG: rpc:RPC_2328 chromosomal replication initiator, DnaA; Belongs to the DnaA family.


ensembl_gene_id: RPE_3284
symbol: purM
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2326 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein.


ensembl_gene_id: RPE_3285
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: RPE_3286
symbol: RPE_3286
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpa:RPA3053 cold shock DNA binding protein.


ensembl_gene_id: RPE_3287
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: RPE_3290
symbol: RPE_3290
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase III chi subunit, HolC; KEGG: rpc:RPC_2315 DNA polymerase III chi subunit, HolC.


ensembl_gene_id: RPE_3291
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: RPE_3294
symbol: lptD
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.


ensembl_gene_id: RPE_3296
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: RPE_3297
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: RPE_3298
symbol: RPE_3298
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_2307 alcohol dehydrogenase, zinc-binding.


ensembl_gene_id: RPE_3302
symbol: RPE_3302
gene_biotype: protein_coding
description:
  TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rpc:RPC_2304 conserved hypothetical protein 255.


ensembl_gene_id: RPE_3303
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: RPE_3304
symbol: RPE_3304
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: RPE_3305
symbol: acpP
gene_biotype: protein_coding
description:
  Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: RPE_3306
symbol: RPE_3306
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_3307
symbol: RPE_3307
gene_biotype: protein_coding
description:
  [Acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: bja:blr4082 malonyl-CoA:acyl carrier protein transacylase.


ensembl_gene_id: RPE_3308
symbol: RPE_3308
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpa:RPA3076 putative diguanylate cyclase (GGDEF).


ensembl_gene_id: RPE_3310
symbol: rpsR
gene_biotype: protein_coding
description:
  SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: RPE_3317
symbol: RPE_3317
gene_biotype: protein_coding
description:
  Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: RPE_3320
symbol: RPE_3320
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative.


ensembl_gene_id: RPE_3321
symbol: RPE_3321
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVUA0022 ABC transporter, ATP-binding protein.


ensembl_gene_id: RPE_3323
symbol: RPE_3323
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpa:RPA2367 two component sensor histidine kinase, possible AdeS.


ensembl_gene_id: RPE_3324
symbol: RPE_3324
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_2735 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_3326
symbol: RPE_3326
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpa:RPA2371 putative RND multidrug efflux membrane fusion protein MexA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_3327
symbol: RPE_3327
gene_biotype: protein_coding
description:
  TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rpa:RPA2372 RND multidrug efflux transporter MexB.


ensembl_gene_id: RPE_3333
symbol: RPE_3333
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpb:RPB_2521 diguanylate cyclase.


ensembl_gene_id: RPE_3334
symbol: RPE_3334
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: RPE_3338
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: RPE_3340
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: RPE_3341
symbol: RPE_3341
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_2281 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_3344
symbol: RPE_3344
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rpc:RPC_2280 major facilitator superfamily MFS_1.


ensembl_gene_id: RPE_3345
symbol: der
gene_biotype: protein_coding
description:
  Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: RPE_3348
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: RPE_3350
symbol: RPE_3350
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized protein UPF0065; KEGG: rpd:RPD_3010 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_3356
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: RPE_3358
symbol: gatA
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: RPE_3362
symbol: gatC
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: RPE_3367
symbol: RPE_3367
gene_biotype: protein_coding
description:
  PFAM: 67 kDa myosin-cross-reactive antigen family protein; KEGG: rpb:RPB_2430 myosin-cross-reactive antigen.


ensembl_gene_id: RPE_3368
symbol: RPE_3368
gene_biotype: protein_coding
description:
  Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: RPE_3372
symbol: ddpX
gene_biotype: protein_coding
description:
  vanX D-Ala-D-Ala dipeptidase. Metallo peptidase. MEROPS family M15D; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.


ensembl_gene_id: RPE_3373
symbol: pyrB
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2247 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: RPE_3374
symbol: RPE_3374
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: rpc:RPC_2246 dihydroorotase, multifunctional complex type.


ensembl_gene_id: RPE_3375
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol-3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: RPE_3377
symbol: RPE_3377
gene_biotype: protein_coding
description:
  TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rpc:RPC_2244 DNA processing protein DprA, putative.


ensembl_gene_id: RPE_3379
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: RPE_3380
symbol: rnr
gene_biotype: protein_coding
description:
  RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: RPE_3383
symbol: rpmG
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L33; KEGG: rpa:RPA3129 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: RPE_3385
symbol: RPE_3385
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rpc:RPC_3308 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_3386
symbol: RPE_3386
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_3309 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_3388
symbol: dinB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: RPE_3392
symbol: RPE_3392
gene_biotype: protein_coding
description:
  PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rpc:RPC_3314 glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: RPE_3399
symbol: RPE_3399
gene_biotype: protein_coding
description:
  PFAM: Sporulation domain protein; Lytic transglycosylase, catalytic; KEGG: rpc:RPC_3321 lytic transglycosylase, catalytic.


ensembl_gene_id: RPE_3400
symbol: RPE_3400
gene_biotype: protein_coding
description:
  8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: nha:Nham_2816 8-amino-7-oxononanoate synthase.


ensembl_gene_id: RPE_3401
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: RPE_3402
symbol: RPE_3402
gene_biotype: protein_coding
description:
  Aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: nha:Nham_2814 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RPE_3404
symbol: RPE_3404
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_2396 AAA_5 ATPase; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.


ensembl_gene_id: RPE_3407
symbol: RPE_3407
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: rpc:RPC_3328 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.


ensembl_gene_id: RPE_3410
symbol: RPE_3410
gene_biotype: protein_coding
description:
  TIGRFAM: mobile mystery protein B; PFAM: filamentation induced by cAMP protein Fic; KEGG: atc:AGR_pTi_bx97 hypothetical protein.


ensembl_gene_id: RPE_3411
symbol: RPE_3411
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; TIGRFAM: mobile mystery protein A; PFAM: helix-turn-helix domain protein; KEGG: atc:AGR_pTi_183 DNA-binding protein.


ensembl_gene_id: RPE_3413
symbol: panC
gene_biotype: protein_coding
description:
  Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: RPE_3414
symbol: RPE_3414
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised conserved protein UCP032025; KEGG: rpc:RPC_3333 uncharacterised conserved protein UCP032025.


ensembl_gene_id: RPE_3417
symbol: RPE_3417
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpc:RPC_3336 glutathione S-transferase-like.


ensembl_gene_id: RPE_3421
symbol: RPE_3421
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rpb:RPB_2380 transcriptional regulator, XRE family.


ensembl_gene_id: RPE_3427
symbol: RPE_3427
gene_biotype: protein_coding
description:
  Citrate lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.


ensembl_gene_id: RPE_3429
symbol: RPE_3429
gene_biotype: protein_coding
description:
  KEGG: rfr:Rfer_2408 citrate lyase, beta subunit; TIGRFAM: citrate lyase, beta subunit; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: RPE_3430
symbol: RPE_3430
gene_biotype: protein_coding
description:
  KEGG: rfr:Rfer_2407 citrate lyase, alpha subunit; TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase, alpha subunit.


ensembl_gene_id: RPE_3431
symbol: RPE_3431
gene_biotype: protein_coding
description:
  Holo-ACP synthase; PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; KEGG: rfr:Rfer_2406 holo-citrate lyase synthase.


ensembl_gene_id: RPE_3432
symbol: citG
gene_biotype: protein_coding
description:
  PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: rfr:Rfer_2405 triphosphoribosyl-dephospho-CoA synthase.


ensembl_gene_id: RPE_3435
symbol: RPE_3435
gene_biotype: protein_coding
description:
  PFAM: surface presentation of antigens (SPOA) protein; KEGG: rpc:RPC_3347 surface presentation of antigens (SpoA) protein.


ensembl_gene_id: RPE_3436
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: RPE_3438
symbol: RPE_3438
gene_biotype: protein_coding
description:
  2,3-dimethylmalate lyase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase/PEP mutase superfamily. Oxaloacetate decarboxylase family.


ensembl_gene_id: RPE_3439
symbol: RPE_3439
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase L chain, ATP-binding protein; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: rpc:RPC_3352 carbamoyl-phosphate synthase L chain, ATP-binding.


ensembl_gene_id: RPE_3442
symbol: RPE_3442
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: rpc:RPC_3356 deoxyribodipyrimidine photolyase.


ensembl_gene_id: RPE_3444
symbol: RPE_3444
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_3358 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: RPE_3445
symbol: RPE_3445
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3360 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_3448
symbol: RPE_3448
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bja:blr4803 two-component hybrid sensor and regulator.


ensembl_gene_id: RPE_3449
symbol: RPE_3449
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:blr4802 two-component response regulator.


ensembl_gene_id: RPE_3460
symbol: RPE_3460
gene_biotype: protein_coding
description:
  PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpc:RPC_2913 PpiC-type peptidyl-prolyl cis-trans isomerase.


ensembl_gene_id: RPE_3465
symbol: RPE_3465
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_2919 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: RPE_3467
symbol: RPE_3467
gene_biotype: protein_coding
description:
  PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: rpc:RPC_2921 hemolysin activation/secretion protein.


ensembl_gene_id: RPE_3470
symbol: RPE_3470
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpc:RPC_2905 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_3477
symbol: RPE_3477
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2205 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_3479
symbol: RPE_3479
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2796 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_3480
symbol: RPE_3480
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_2797 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_3483
symbol: RPE_3483
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpd:RPD_2482 TonB-dependent receptor.


ensembl_gene_id: RPE_3487
symbol: RPE_3487
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; ABC-3 protein; KEGG: rpd:RPD_2479 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: RPE_3490
symbol: RPE_3490
gene_biotype: protein_coding
description:
  Transcriptional regulator, ModE family; TIGRFAM: Molybdenum-pterin binding; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: rpd:RPD_2476 ModE molybdate transport repressor domain.


ensembl_gene_id: RPE_3492
symbol: RPE_3492
gene_biotype: protein_coding
description:
  PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rpc:RPC_4239 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II.


ensembl_gene_id: RPE_3494
symbol: RPE_3494
gene_biotype: protein_coding
description:
  TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: ret:RHE_CH01358 putative teichoic acid biosynthesis, UDP-N-acetyl-D-mannosaminuronic acid transferase protein; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: RPE_3495
symbol: RPE_3495
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sme:SMb20458 putative dTDP-glucose 4,6-dehydratase protein.


ensembl_gene_id: RPE_3496
symbol: RPE_3496
gene_biotype: protein_coding
description:
  PFAM: polysaccharide export protein; KEGG: sme:SMb21073 putative OMA family outer membrane saccharide export protein, similar to ExoF.


ensembl_gene_id: RPE_3497
symbol: RPE_3497
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4235 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.


ensembl_gene_id: RPE_3503
symbol: RPE_3503
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: aba:Acid345_0895 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: RPE_3504
symbol: RPE_3504
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: ret:RHE_CH01359 putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein.


ensembl_gene_id: RPE_3508
symbol: RPE_3508
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rru:Rru_A1486 UDP-glucose 4-epimerase.


ensembl_gene_id: RPE_3511
symbol: RPE_3511
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3026 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: RPE_3512
symbol: RPE_3512
gene_biotype: protein_coding
description:
  TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_3025 type I secretion membrane fusion protein, HlyD.


ensembl_gene_id: RPE_3513
symbol: RPE_3513
gene_biotype: protein_coding
description:
  PFAM: Hemolysin-type calcium-binding region; KEGG: rpb:RPB_0805 glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: RPE_3514
symbol: RPE_3514
gene_biotype: protein_coding
description:
  PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: nha:Nham_3000 two component transcriptional regulator, LuxR family.


ensembl_gene_id: RPE_3521
symbol: RPE_3521
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_3378 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_3523
symbol: RPE_3523
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rpa:RPA2404 probable transcriptional regulator, AraC family.


ensembl_gene_id: RPE_3524
symbol: RPE_3524
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3384 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_3527
symbol: RPE_3527
gene_biotype: protein_coding
description:
  PFAM: dihydrodipicolinate synthetase; KEGG: rpc:RPC_3385 dihydrodipicolinate synthetase; Belongs to the DapA family.


ensembl_gene_id: RPE_3529
symbol: RPE_3529
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rpc:RPC_3387 pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: RPE_3535
symbol: RPE_3535
gene_biotype: protein_coding
description:
  PFAM: DNA/RNA non-specific endonuclease; Peptidase S7, flavivirus helicase (NS3); KEGG: mac:MA3330 hypothetical protein.


ensembl_gene_id: RPE_3536
symbol: RPE_3536
gene_biotype: protein_coding
description:
  PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rru:Rru_A2643 glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: RPE_3542
symbol: RPE_3542
gene_biotype: protein_coding
description:
  Beta-lactamase; PFAM: penicillin-binding protein, transpeptidase; KEGG: rpc:RPC_3398 beta-lactamase.


ensembl_gene_id: RPE_3547
symbol: RPE_3547
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rpb:RPB_2335 pseudouridine synthase, RluD; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: RPE_3556
symbol: RPE_3556
gene_biotype: protein_coding
description:
  Recombination protein MgsA; PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpb:RPB_2324 AAA_5 ATPase.


ensembl_gene_id: RPE_3557
symbol: RPE_3557
gene_biotype: protein_coding
description:
  TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rpc:RPC_3417 peptidase S1C, Do; Belongs to the peptidase S1C family.


ensembl_gene_id: RPE_3558
symbol: RPE_3558
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_3419 alcohol dehydrogenase GroES-like; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.


ensembl_gene_id: RPE_3559
symbol: RPE_3559
gene_biotype: protein_coding
description:
  PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rpc:RPC_3420 glutathione-dependent formaldehyde-activating, GFA.


ensembl_gene_id: RPE_3560
symbol: RPE_3560
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpa:RPA3224 putative short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_3562
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: RPE_3563
symbol: rpsK
gene_biotype: protein_coding
description:
  SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: RPE_3564
symbol: rpsM
gene_biotype: protein_coding
description:
  SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: RPE_3565
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: RPE_3566
symbol: secY
gene_biotype: protein_coding
description:
  Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: RPE_3567
symbol: rplO
gene_biotype: protein_coding
description:
  LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: RPE_3569
symbol: rpsE
gene_biotype: protein_coding
description:
  SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: RPE_3570
symbol: rplR
gene_biotype: protein_coding
description:
  LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: RPE_3571
symbol: rplF
gene_biotype: protein_coding
description:
  LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: RPE_3572
symbol: rpsH
gene_biotype: protein_coding
description:
  SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: RPE_3573
symbol: rpsN
gene_biotype: protein_coding
description:
  SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: RPE_3574
symbol: rplE
gene_biotype: protein_coding
description:
  LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: RPE_3575
symbol: rplX
gene_biotype: protein_coding
description:
  LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: RPE_3576
symbol: rplN
gene_biotype: protein_coding
description:
  LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: RPE_3577
symbol: rpsQ
gene_biotype: protein_coding
description:
  SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: RPE_3578
symbol: rpmC
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L29; KEGG: rpa:RPA3242 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: RPE_3579
symbol: rplP
gene_biotype: protein_coding
description:
  LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: RPE_3580
symbol: rpsC
gene_biotype: protein_coding
description:
  SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: RPE_3581
symbol: rplV
gene_biotype: protein_coding
description:
  LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).


ensembl_gene_id: RPE_3582
symbol: rpsS
gene_biotype: protein_coding
description:
  SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: RPE_3583
symbol: rplB
gene_biotype: protein_coding
description:
  LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: RPE_3584
symbol: rplW
gene_biotype: protein_coding
description:
  LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: RPE_3585
symbol: rplD
gene_biotype: protein_coding
description:
  LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.


ensembl_gene_id: RPE_3586
symbol: rplC
gene_biotype: protein_coding
description:
  LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: RPE_3587
symbol: rpsJ
gene_biotype: protein_coding
description:
  SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: RPE_3588
symbol: tuf1
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: RPE_3589
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]


ensembl_gene_id: RPE_3590
symbol: rpsG
gene_biotype: protein_coding
description:
  SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: RPE_3593
symbol: RPE_3593
gene_biotype: protein_coding
description:
  PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: nha:Nham_1535 monooxygenase, FAD-binding.


ensembl_gene_id: RPE_3594
symbol: RPE_3594
gene_biotype: protein_coding
description:
  PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_3455 ABC transporter related.


ensembl_gene_id: RPE_3596
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: RPE_3597
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: RPE_3598
symbol: rplL
gene_biotype: protein_coding
description:
  LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: RPE_3599
symbol: rplJ
gene_biotype: protein_coding
description:
  LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: RPE_3603
symbol: RPE_3603
gene_biotype: protein_coding
description:
  TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_3464 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_3605
symbol: RPE_3605
gene_biotype: protein_coding
description:
  PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpb:RPB_2279 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.


ensembl_gene_id: RPE_3606
symbol: rplA
gene_biotype: protein_coding
description:
  LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: RPE_3607
symbol: rplK
gene_biotype: protein_coding
description:
  LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: RPE_3608
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: RPE_3609
symbol: secE
gene_biotype: protein_coding
description:
  Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: RPE_3610
symbol: RPE_3610
gene_biotype: protein_coding
description:
  PFAM: Rare lipoprotein A; nuclease (SNase domain protein); KEGG: rpa:RPA2332 rare lipoprotein A:Staphylococcus nuclease (SNase-like).


ensembl_gene_id: RPE_3611
symbol: RPE_3611
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_3475 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_3612
symbol: RPE_3612
gene_biotype: protein_coding
description:
  TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu domain protein domain protein; elongation factor Tu, domain 2 protein; KEGG: rpc:RPC_3450 translation elongation factor Tu.


ensembl_gene_id: RPE_3614
symbol: RPE_3614
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3478 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_3616
symbol: RPE_3616
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_3208 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_3619
symbol: RPE_3619
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA3289 acyl-CoA dehydrogenase.


ensembl_gene_id: RPE_3620
symbol: RPE_3620
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: rpd:RPD_3211 regulatory protein, TetR.


ensembl_gene_id: RPE_3624
symbol: RPE_3624
gene_biotype: protein_coding
description:
  TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpc:RPC_3639 cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: RPE_3627
symbol: RPE_3627
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4603 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_3629
symbol: RPE_3629
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_4605 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_3631
symbol: RPE_3631
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4607 CheA signal transduction histidine kinases.


ensembl_gene_id: RPE_3632
symbol: RPE_3632
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_4608 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_3634
symbol: RPE_3634
gene_biotype: protein_coding
description:
  PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rpc:RPC_4610 PBS lyase heat-like repeat.


ensembl_gene_id: RPE_3637
symbol: RPE_3637
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: rpc:RPC_4613 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_3639
symbol: RPE_3639
gene_biotype: protein_coding
description:
  TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rpc:RPC_4597 ribonuclease BN, putative.


ensembl_gene_id: RPE_3643
symbol: RPE_3643
gene_biotype: protein_coding
description:
  PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_4596 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: RPE_3644
symbol: RPE_3644
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; KEGG: rfr:Rfer_2156 malto-oligosyltrehalose synthase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77.


ensembl_gene_id: RPE_3645
symbol: RPE_3645
gene_biotype: protein_coding
description:
  Catalase; PFAM: manganese containing catalase; protein of unknown function DUF892; KEGG: bja:bll3758 Mn-containing catalase.


ensembl_gene_id: RPE_3647
symbol: RPE_3647
gene_biotype: protein_coding
description:
  TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpd:RPD_0579 exodeoxyribonuclease III (xth).


ensembl_gene_id: RPE_3648
symbol: RPE_3648
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpb:RPB_1505 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_3649
symbol: RPE_3649
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_1223 alcohol dehydrogenase, zinc-binding.


ensembl_gene_id: RPE_3650
symbol: RPE_3650
gene_biotype: protein_coding
description:
  TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rpd:RPD_0346 oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: RPE_3652
symbol: RPE_3652
gene_biotype: protein_coding
description:
  Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: bxe:Bxe_C1346 putative cyclic beta 1-2 glucan synthetase.


ensembl_gene_id: RPE_3658
symbol: RPE_3658
gene_biotype: protein_coding
description:
  TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: rpd:RPD_3418 arsenate reductase.


ensembl_gene_id: RPE_3659
symbol: RPE_3659
gene_biotype: protein_coding
description:
  PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rpd:RPD_3419 low molecular weight phosphotyrosine protein phosphatase.


ensembl_gene_id: RPE_3674
symbol: RPE_3674
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: bja:blr7343 probable short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_3678
symbol: RPE_3678
gene_biotype: protein_coding
description:
  Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: rpc:RPC_2184 ribulose 1 5-bisphosphate carboxylase large subunit-like.


ensembl_gene_id: RPE_3679
symbol: RPE_3679
gene_biotype: protein_coding
description:
  TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: rpd:RPD_1058 ferrous iron transport protein B.


ensembl_gene_id: RPE_3682
symbol: RPE_3682
gene_biotype: protein_coding
description:
  TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: rpc:RPC_3641 RNA methyltransferase TrmH, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: RPE_3683
symbol: RPE_3683
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpc:RPC_3643 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: RPE_3684
symbol: RPE_3684
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3644 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_3685
symbol: RPE_3685
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3645 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_3687
symbol: RPE_3687
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_3647 ABC transporter related.


ensembl_gene_id: RPE_3688
symbol: RPE_3688
gene_biotype: protein_coding
description:
  PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpc:RPC_3648 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: RPE_3689
symbol: RPE_3689
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_3649 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_3690
symbol: RPE_3690
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpc:RPC_3650 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_3692
symbol: RPE_3692
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: rpc:RPC_4481 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.


ensembl_gene_id: RPE_3695
symbol: RPE_3695
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: neu:NE1909 diguanylate cyclase/phosphodiesterase domain 2 (EAL).


ensembl_gene_id: RPE_3701
symbol: RPE_3701
gene_biotype: protein_coding
description:
  PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_3661 excinuclease ABC, C subunit-like.


ensembl_gene_id: RPE_3703
symbol: RPE_3703
gene_biotype: protein_coding
description:
  PFAM: glutathione peroxidase; KEGG: rpc:RPC_3665 glutathione peroxidase; Belongs to the glutathione peroxidase family.


ensembl_gene_id: RPE_3706
symbol: RPE_3706
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3668 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family.


ensembl_gene_id: RPE_3707
symbol: RPE_3707
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: bja:blr6749 hypothetical protein.


ensembl_gene_id: RPE_3708
symbol: tal
gene_biotype: protein_coding
description:
  Glucose-6-phosphate isomerase / transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.


ensembl_gene_id: RPE_3709
symbol: RPE_3709
gene_biotype: protein_coding
description:
  TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpc:RPC_3671 6-phosphogluconate dehydrogenase related protein.


ensembl_gene_id: RPE_3710
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: RPE_3712
symbol: RPE_3712
gene_biotype: protein_coding
description:
  Gluconate kinase; KEGG: rpc:RPC_3674 carbohydrate kinase, thermoresistant glucokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase.


ensembl_gene_id: RPE_3713
symbol: RPE_3713
gene_biotype: protein_coding
description:
  TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: rpc:RPC_3675 Cof protein.


ensembl_gene_id: RPE_3715
symbol: RPE_3715
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3677 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77.


ensembl_gene_id: RPE_3716
symbol: glgE
gene_biotype: protein_coding
description:
  Alpha amylase, catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.


ensembl_gene_id: RPE_3717
symbol: RPE_3717
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3679 trehalose synthase-like; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.


ensembl_gene_id: RPE_3718
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: RPE_3719
symbol: RPE_3719
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3681 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: RPE_3720
symbol: RPE_3720
gene_biotype: protein_coding
description:
  Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: rpc:RPC_4629 hydroxypyruvate reductase.


ensembl_gene_id: RPE_3721
symbol: RPE_3721
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3682 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.


ensembl_gene_id: RPE_3724
symbol: RPE_3724
gene_biotype: protein_coding
description:
  PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rpc:RPC_3685 ATP dependent DNA ligase.


ensembl_gene_id: RPE_3727
symbol: RPE_3727
gene_biotype: protein_coding
description:
  PFAM: SirA family protein; KEGG: nha:Nham_3129 SirA-like; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: RPE_3728
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdenum cofactor guanylyltransferase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: RPE_3729
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: RPE_3730
symbol: ureE
gene_biotype: protein_coding
description:
  UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.


ensembl_gene_id: RPE_3731
symbol: RPE_3731
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpb:RPB_1865 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: RPE_3732
symbol: ureC
gene_biotype: protein_coding
description:
  Urease. Metallo peptidase. MEROPS family M38; KEGG: bja:blr1457 urease alpha subunit; TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.


ensembl_gene_id: RPE_3733
symbol: RPE_3733
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: rpa:RPA3661 metal dependent phosphohydrolase.


ensembl_gene_id: RPE_3734
symbol: ureB
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3695 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit; Belongs to the urease beta subunit family.


ensembl_gene_id: RPE_3735
symbol: ureA
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_1800 urease, gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit region; Belongs to the urease gamma subunit family.


ensembl_gene_id: RPE_3736
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: RPE_3739
symbol: RPE_3739
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpc:RPC_3700 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3740
symbol: RPE_3740
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpc:RPC_3701 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3741
symbol: RPE_3741
gene_biotype: protein_coding
description:
  Branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor; KEGG: rpd:RPD_3510 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_3742
symbol: RPE_3742
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_3703 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.


ensembl_gene_id: RPE_3743
symbol: infA
gene_biotype: protein_coding
description:
  Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: RPE_3744
symbol: RPE_3744
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpa:RPA3672 cold shock DNA binding protein.


ensembl_gene_id: RPE_3751
symbol: RPE_3751
gene_biotype: protein_coding
description:
  PFAM: type II and III secretion system protein; transport-associated; KEGG: rpc:RPC_3713 type II and III secretion system protein; Belongs to the bacterial secretin family.


ensembl_gene_id: RPE_3752
symbol: RPE_3752
gene_biotype: protein_coding
description:
  Caulobacter-type pilus biogenesis lipoprotein CpaD; TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: rpc:RPC_3714 pilus assembly protein CpaD.


ensembl_gene_id: RPE_3757
symbol: RPE_3757
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_3719 tetratricopeptide TPR_2.


ensembl_gene_id: RPE_3758
symbol: RPE_3758
gene_biotype: protein_coding
description:
  PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: rpc:RPC_3720 leucyl aminopeptidase; Belongs to the peptidase M17 family.


ensembl_gene_id: RPE_3760
symbol: RPE_3760
gene_biotype: protein_coding
description:
  TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: rpc:RPC_3722 nucleoside diphosphate pyrophosphatase.


ensembl_gene_id: RPE_3761
symbol: RPE_3761
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: nwi:Nwi_0292 ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RPE_3764
symbol: RPE_3764
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3726 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_3765
symbol: RPE_3765
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3727 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_3766
symbol: RPE_3766
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3728 extracellular solute-binding protein, family 5.


ensembl_gene_id: RPE_3767
symbol: RPE_3767
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3729 extracellular solute-binding protein, family 5.


ensembl_gene_id: RPE_3769
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: RPE_3772
symbol: RPE_3772
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_1765 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: RPE_3773
symbol: RPE_3773
gene_biotype: protein_coding
description:
  Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: RPE_3774
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: RPE_3775
symbol: RPE_3775
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_1750 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_3778
symbol: RPE_3778
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_1748 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RPE_3780
symbol: RPE_3780
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rpb:RPB_1746 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RPE_3782
symbol: RPE_3782
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr7823 ABC transporter ATP-binding protein.


ensembl_gene_id: RPE_3783
symbol: RPE_3783
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA3720 putative branched-chain amino acid transport system ATP-binding protein.


ensembl_gene_id: RPE_3784
symbol: RPE_3784
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_3557 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3785
symbol: RPE_3785
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_3558 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3786
symbol: RPE_3786
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_3559 extracellular ligand-binding receptor.


ensembl_gene_id: RPE_3787
symbol: RPE_3787
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA3724 possible high-affinity leucine-isoleucine-valine transport system; periplasmic binding protein.


ensembl_gene_id: RPE_3788
symbol: RPE_3788
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_3562 putative leucine/isoleucine/valine-binding protein precursor.


ensembl_gene_id: RPE_3789
symbol: RPE_3789
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_1898 extracellular ligand-binding receptor.


ensembl_gene_id: RPE_3791
symbol: RPE_3791
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rpd:RPD_1895 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: RPE_3794
symbol: RPE_3794
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: rpd:RPD_1893 regulatory protein, MarR.


ensembl_gene_id: RPE_3795
symbol: RPE_3795
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_1892 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3796
symbol: RPE_3796
gene_biotype: protein_coding
description:
  ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3572 branched-chain amino acid transport system ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3797
symbol: RPE_3797
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA1791 branched-chain amino acid transport system ATP-binding protein.


ensembl_gene_id: RPE_3798
symbol: RPE_3798
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: bba:Bd0203 methyl-accepting chemotaxis protein.


ensembl_gene_id: RPE_3799
symbol: RPE_3799
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpb:RPB_3574 diguanylate cyclase.


ensembl_gene_id: RPE_3805
symbol: RPE_3805
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpb:RPB_3580 TRAP dicarboxylate transporter DctM subunit.


ensembl_gene_id: RPE_3807
symbol: RPE_3807
gene_biotype: protein_coding
description:
  PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpb:RPB_3582 TRAP dicarboxylate transporter DctP subunit.


ensembl_gene_id: RPE_3808
symbol: RPE_3808
gene_biotype: protein_coding
description:
  KEGG: rpa:RPA1781 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.


ensembl_gene_id: RPE_3810
symbol: RPE_3810
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_2218 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_3811
symbol: RPE_3811
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpc:RPC_2217 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.


ensembl_gene_id: RPE_3819
symbol: RPE_3819
gene_biotype: protein_coding
description:
  PFAM: cyclic nucleotide-binding; KEGG: rpc:RPC_2203 cyclic nucleotide-binding domain (cNMP-BD) protein.


ensembl_gene_id: RPE_3825
symbol: RPE_3825
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpa:RPA1705 possible 3-hydroxyacyl-CoA dehydrogenase type II; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_3827
symbol: RPE_3827
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2194 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RPE_3830
symbol: RPE_3830
gene_biotype: protein_coding
description:
  TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: rpc:RPC_4652 outer membrane autotransporter barrel.


ensembl_gene_id: RPE_3833
symbol: RPE_3833
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_3737 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_3843
symbol: RPE_3843
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:blr7776 probable cation efflux system protein.


ensembl_gene_id: RPE_3846
symbol: RPE_3846
gene_biotype: protein_coding
description:
  PFAM: histone family protein DNA-binding protein; KEGG: rpc:RPC_3750 histone-like DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: RPE_3852
symbol: RPE_3852
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_3133 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3853
symbol: RPE_3853
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_3134 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_3854
symbol: RPE_3854
gene_biotype: protein_coding
description:
  ABC-type branched-chain amino acid transport systems periplasmic component; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_1944 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_3856
symbol: RPE_3856
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpb:RPB_3149 TonB-dependent receptor.


ensembl_gene_id: RPE_3857
symbol: RPE_3857
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA0131 putative sulfonate transport system ATP-binding protein.


ensembl_gene_id: RPE_3858
symbol: RPE_3858
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA0132 ABC sulfonate transport system, permease protein.


ensembl_gene_id: RPE_3859
symbol: RPE_3859
gene_biotype: protein_coding
description:
  TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpa:RPA0133 ABC sulfate transport system, periplasmic binding protein.


ensembl_gene_id: RPE_3860
symbol: RPE_3860
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: rpa:RPA0134 hydrogenase gamma-fused hydrogenase large and small subunit.


ensembl_gene_id: RPE_3861
symbol: RPE_3861
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpa:RPA0135 possible oxidoreductase.


ensembl_gene_id: RPE_3863
symbol: RPE_3863
gene_biotype: protein_coding
description:
  Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.


ensembl_gene_id: RPE_3866
symbol: RPE_3866
gene_biotype: protein_coding
description:
  PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_3850 cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: RPE_3868
symbol: RPE_3868
gene_biotype: protein_coding
description:
  TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: rpc:RPC_3852 Na+/H+ antiporter subunit.


ensembl_gene_id: RPE_3869
symbol: RPE_3869
gene_biotype: protein_coding
description:
  PFAM: multiple resistance and pH regulation protein F; KEGG: rpc:RPC_3853 multiple resistance and pH regulation protein F.


ensembl_gene_id: RPE_3871
symbol: RPE_3871
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpc:RPC_3855 NADH dehydrogenase (quinone).


ensembl_gene_id: RPE_3872
symbol: RPE_3872
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rpc:RPC_3856 NADH-ubiquinone oxidoreductase, chain 4L.


ensembl_gene_id: RPE_3873
symbol: RPE_3873
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: rpc:RPC_3857 NADH dehydrogenase (quinone).


ensembl_gene_id: RPE_3876
symbol: RPE_3876
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_3620 heavy metal translocating P-type ATPase.


ensembl_gene_id: RPE_3878
symbol: RPE_3878
gene_biotype: protein_coding
description:
  DNA-binding protein Fis / transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_1061 Nif-specific regulatory protein.


ensembl_gene_id: RPE_3881
symbol: RPE_3881
gene_biotype: protein_coding
description:
  Nitrogenase; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpc:RPC_4681 nitrogenase; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: RPE_3883
symbol: RPE_3883
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4683 nitrogenase alpha chain; TIGRFAM: nitrogenase alpha chain; nitrogenase component I, alpha chain; nitrogenase iron-iron protein, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1.


ensembl_gene_id: RPE_3884
symbol: nifH
gene_biotype: protein_coding
description:
  Nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: RPE_3885
symbol: RPE_3885
gene_biotype: protein_coding
description:
  Transcriptional regulator, NifA subfamily, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_0884 transcriptional regulator, NifA subfamily, fis family.


ensembl_gene_id: RPE_3887
symbol: RPE_3887
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: noc:Noc_0891 transcriptional regulator, GntRfamily, with aminotransferase domain.


ensembl_gene_id: RPE_3888
symbol: RPE_3888
gene_biotype: protein_coding
description:
  NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase; PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: rpa:RPA1431 putative NAD+ ADP-ribosyltransferase.


ensembl_gene_id: RPE_3889
symbol: RPE_3889
gene_biotype: protein_coding
description:
  TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_1931 ABC sulfate transport system, periplasmic binding protein.


ensembl_gene_id: RPE_3890
symbol: RPE_3890
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_1932 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_3892
symbol: RPE_3892
gene_biotype: protein_coding
description:
  PFAM: aspartate/glutamate/uridylate kinase; KEGG: rpa:RPA1442 possible uridine monophosphate kinase.


ensembl_gene_id: RPE_3893
symbol: RPE_3893
gene_biotype: protein_coding
description:
  PFAM: aspartate/glutamate/uridylate kinase; KEGG: rpd:RPD_0592 aspartate/glutamate/uridylate kinase.


ensembl_gene_id: RPE_3897
symbol: RPE_3897
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF125, transmembrane; KEGG: rpa:RPA2784 possible nodulin-related protein.


ensembl_gene_id: RPE_3898
symbol: RPE_3898
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_2762 ferric reductase-like transmembrane component-like.


ensembl_gene_id: RPE_3903
symbol: RPE_3903
gene_biotype: protein_coding
description:
  PFAM: CsbD family protein; KEGG: hch:HCH_05492 hypothetical protein; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: RPE_3904
symbol: RPE_3904
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: pfo:Pfl_2556 GCN5-related N-acetyltransferase.


ensembl_gene_id: RPE_3906
symbol: RPE_3906
gene_biotype: protein_coding
description:
  PFAM: acyl-protein synthetase, LuxE; KEGG: cvi:CV4318 long-chain-fatty-acid--luciferin-component ligase, acyl-protein synthase.


ensembl_gene_id: RPE_3910
symbol: RPE_3910
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1039 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: RPE_3911
symbol: RPE_3911
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sat:SYN_02357 anti-sigma regulatory factor.


ensembl_gene_id: RPE_3913
symbol: RPE_3913
gene_biotype: protein_coding
description:
  Serine phosphatase; PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sat:SYN_02359 serine phosphatase RsbU, regulator of sigma subunit.


ensembl_gene_id: RPE_3914
symbol: RPE_3914
gene_biotype: protein_coding
description:
  PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_3791 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RPE_3915
symbol: RPE_3915
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: rpb:RPB_3847 glucose-methanol-choline oxidoreductase.


ensembl_gene_id: RPE_3916
symbol: RPE_3916
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpc:RPC_3793 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_3918
symbol: RPE_3918
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_3849 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_3919
symbol: RPE_3919
gene_biotype: protein_coding
description:
  PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpc:RPC_3796 two component transcriptional regulator, LuxR family.


ensembl_gene_id: RPE_3921
symbol: RPE_3921
gene_biotype: protein_coding
description:
  Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: rpc:RPC_3798 multi-sensor hybrid histidine kinase.


ensembl_gene_id: RPE_3922
symbol: RPE_3922
gene_biotype: protein_coding
description:
  PFAM: EAL domain protein; response regulator receiver; KEGG: rpc:RPC_3799 response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain).


ensembl_gene_id: RPE_3926
symbol: RPE_3926
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinases; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_3803 CheA signal transduction histidine kinases.


ensembl_gene_id: RPE_3928
symbol: RPE_3928
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpb:RPB_2250 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_3929
symbol: RPE_3929
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_3804 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_3930
symbol: RPE_3930
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_3805 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_3932
symbol: RPE_3932
gene_biotype: protein_coding
description:
  PFAM: protein kinase; UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rpc:RPC_3809 serine/threonine protein kinase.


ensembl_gene_id: RPE_3935
symbol: RPE_3935
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_1487 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: RPE_3936
symbol: RPE_3936
gene_biotype: protein_coding
description:
  TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase, 4VR; KEGG: rpc:RPC_3813 bacteriochlorophyll 4-vinyl reductase.


ensembl_gene_id: RPE_3937
symbol: RPE_3937
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3814 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: RPE_3941
symbol: RPE_3941
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3818 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein.


ensembl_gene_id: RPE_3942
symbol: RPE_3942
gene_biotype: protein_coding
description:
  PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rpc:RPC_3819 hemerythrin HHE cation binding region.


ensembl_gene_id: RPE_3943
symbol: RPE_3943
gene_biotype: protein_coding
description:
  PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: rpc:RPC_3820 6-pyruvoyl tetrahydropterin synthase and hypothetical protein.


ensembl_gene_id: RPE_3944
symbol: RPE_3944
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3822 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_3953
symbol: RPE_3953
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF214; KEGG: rpa:RPA1649 predicted ABC-type transport systems, involved in lipoprotein release, permease components.


ensembl_gene_id: RPE_3954
symbol: RPE_3954
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpd:RPD_1469 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_3958
symbol: msrB
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_1518 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: RPE_3959
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: RPE_3960
symbol: carB
gene_biotype: protein_coding
description:
  TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: rpd:RPD_1457 carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.


ensembl_gene_id: RPE_3961
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: RPE_3963
symbol: RPE_3963
gene_biotype: protein_coding
description:
  PFAM: regulatory protein, AsnC/Lrp family; KEGG: rpc:RPC_3837 transcriptional regulator, AsnC family.


ensembl_gene_id: RPE_3964
symbol: RPE_3964
gene_biotype: protein_coding
description:
  TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: rpc:RPC_3838 thioredoxin reductase.


ensembl_gene_id: RPE_3965
symbol: RPE_3965
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_3839 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_3976
symbol: RPE_3976
gene_biotype: protein_coding
description:
  TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_2384 4-hydroxybenzoyl-CoA thioesterase.


ensembl_gene_id: RPE_3979
symbol: RPE_3979
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_1922 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_3981
symbol: RPE_3981
gene_biotype: protein_coding
description:
  1-Cys peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: RPE_3985
symbol: RPE_3985
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_2380 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: RPE_3986
symbol: RPE_3986
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_1938 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: RPE_3987
symbol: RPE_3987
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: rpc:RPC_3023 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_3988
symbol: RPE_3988
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_3024 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_3989
symbol: RPE_3989
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_3025 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_3990
symbol: RPE_3990
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_3026 histidine kinase.


ensembl_gene_id: RPE_3993
symbol: RPE_3993
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_3029 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_3994
symbol: RPE_3994
gene_biotype: protein_coding
description:
  PFAM: phage integrase family protein; KEGG: rpa:RPA4082 possible phage-like integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: RPE_4002
symbol: RPE_4002
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: tcr:506491.20 myosin heavy chain Pfam: DUF593 PCEMA1 DUF827 Fibrinogen_BP TolA Vicilin_N Myosin_tail_1 CASP_C GBP_C Erp_C Laminin_I PROSITE: GLU_RICH.


ensembl_gene_id: RPE_4008
symbol: RPE_4008
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: gme:Gmet_1194 hypothetical protein.


ensembl_gene_id: RPE_4016
symbol: RPE_4016
gene_biotype: protein_coding
description:
  PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rpc:RPC_3893 conjugal transfer protein TrbG/VirB9/CagX.


ensembl_gene_id: RPE_4018
symbol: RPE_4018
gene_biotype: protein_coding
description:
  PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: rpc:RPC_3895 TrbL/VirB6 plasmid conjugal transfer protein.


ensembl_gene_id: RPE_4022
symbol: RPE_4022
gene_biotype: protein_coding
description:
  PFAM: type IV secretory pathway, VirB3 family protein; KEGG: rpc:RPC_3899 type IV secretory pathway, VirB3-like.


ensembl_gene_id: RPE_4030
symbol: RPE_4030
gene_biotype: protein_coding
description:
  TraF peptidase. Serine peptidase. MEROPS family S26C; KEGG: rpc:RPC_3906 conjugal transfer protein precursor.


ensembl_gene_id: RPE_4037
symbol: RPE_4037
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_3914 transcriptional regulator, XRE family.


ensembl_gene_id: RPE_4047
symbol: RPE_4047
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: psb:Psyr_5115 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal.


ensembl_gene_id: RPE_4048
symbol: RPE_4048
gene_biotype: protein_coding
description:
  PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: nha:Nham_3765 DNA polymerase III, alpha subunit.


ensembl_gene_id: RPE_4063
symbol: RPE_4063
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3942 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_4064
symbol: RPE_4064
gene_biotype: protein_coding
description:
  PFAM: Rv0623 family protein transcription factor; KEGG: rpd:RPD_1446 Rv0623-like transcription factor.


ensembl_gene_id: RPE_4068
symbol: RPE_4068
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpc:RPC_3945 transcriptional regulator, Crp/Fnr family.


ensembl_gene_id: RPE_4069
symbol: RPE_4069
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_2743 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4071
symbol: RPE_4071
gene_biotype: protein_coding
description:
  Nitrite reductase, copper-containing; KEGG: bja:blr7089 respiratory nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3.


ensembl_gene_id: RPE_4073
symbol: RPE_4073
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_1439 extracellular solute-binding protein, family 1.


ensembl_gene_id: RPE_4074
symbol: RPE_4074
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3948 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_4075
symbol: RPE_4075
gene_biotype: protein_coding
description:
  KEGG: ccr:CC2874 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: RPE_4077
symbol: RPE_4077
gene_biotype: protein_coding
description:
  KEGG: rpa:RPA4155 3-oxoadipate CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.


ensembl_gene_id: RPE_4078
symbol: RPE_4078
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3950 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.


ensembl_gene_id: RPE_4081
symbol: RPE_4081
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3952 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_4082
symbol: RPE_4082
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1455 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_4083
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: RPE_4084
symbol: RPE_4084
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3955 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_4088
symbol: RPE_4088
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3959 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_4089
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: RPE_4090
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: RPE_4091
symbol: rpsU
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S21; KEGG: rpc:RPC_3962 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: RPE_4095
symbol: RPE_4095
gene_biotype: protein_coding
description:
  PFAM: sodium/calcium exchanger membrane region; KEGG: rpc:RPC_3965 sodium/calcium exchanger membrane region.


ensembl_gene_id: RPE_4096
symbol: RPE_4096
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: RPE_4098
symbol: RPE_4098
gene_biotype: protein_coding
description:
  NAD(P)(+) transhydrogenase (AB-specific); PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rpc:RPC_3968 NAD(P)(+) transhydrogenase (AB-specific).


ensembl_gene_id: RPE_4099
symbol: RPE_4099
gene_biotype: protein_coding
description:
  PFAM: aa3 type cytochrome c oxidase subunit IV; KEGG: rpc:RPC_3969 aa3 type cytochrome c oxidase subunit IV.


ensembl_gene_id: RPE_4100
symbol: RPE_4100
gene_biotype: protein_coding
description:
  TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rpb:RPB_1433 death-on-curing protein.


ensembl_gene_id: RPE_4101
symbol: RPE_4101
gene_biotype: protein_coding
description:
  Transcriptional regulator/antitoxin, MazE; TIGRFAM: putative addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rpd:RPD_1412 SpoVT/AbrB-like.


ensembl_gene_id: RPE_4102
symbol: RPE_4102
gene_biotype: protein_coding
description:
  TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: rpc:RPC_3974 peptidase M3B, oligoendopeptidase-related clade 3.


ensembl_gene_id: RPE_4104
symbol: RPE_4104
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: rpc:RPC_3976 two component, sigma54 specific, transcriptional regulator, fis family.


ensembl_gene_id: RPE_4106
symbol: RPE_4106
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rpc:RPC_3978 protein of unknown function DUF882.


ensembl_gene_id: RPE_4114
symbol: RPE_4114
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_3988 tetratricopeptide TPR_2.


ensembl_gene_id: RPE_4115
symbol: rpmJ
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L36; KEGG: rpc:RPC_3989 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: RPE_4122
symbol: RPE_4122
gene_biotype: protein_coding
description:
  PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rpc:RPC_3997 YbaK/prolyl-tRNA synthetase associated region.


ensembl_gene_id: RPE_4125
symbol: RPE_4125
gene_biotype: protein_coding
description:
  PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: rpc:RPC_4001 polysaccharide biosynthesis protein.


ensembl_gene_id: RPE_4126
symbol: RPE_4126
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA1762 putative acyl-CoA dehydrogenase.


ensembl_gene_id: RPE_4127
symbol: RPE_4127
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_1675 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RPE_4129
symbol: thrB
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4077 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase; Belongs to the pseudomonas-type ThrB family.


ensembl_gene_id: RPE_4134
symbol: RPE_4134
gene_biotype: protein_coding
description:
  PFAM: phosphate-starvation-inducible E; KEGG: rpc:RPC_4082 phosphate-starvation-inducible E; Belongs to the PsiE family.


ensembl_gene_id: RPE_4141
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: RPE_4143
symbol: RPE_4143
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: nha:Nham_4657 transcriptional regulator, XRE family.


ensembl_gene_id: RPE_4144
symbol: RPE_4144
gene_biotype: protein_coding
description:
  PFAM: NapC/NirT cytochrome c domain protein; KEGG: rpc:RPC_1749 NapC/NirT cytochrome c-like; Belongs to the TorC/TorY family.


ensembl_gene_id: RPE_4146
symbol: RPE_4146
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpa:RPA2957 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL).


ensembl_gene_id: RPE_4147
symbol: RPE_4147
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rpc:RPC_4088 beta-lactamase-like.


ensembl_gene_id: RPE_4148
symbol: RPE_4148
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; KEGG: bja:bll3116 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase.


ensembl_gene_id: RPE_4149
symbol: RPE_4149
gene_biotype: protein_coding
description:
  TIGRFAM: putative thymidine phosphorylase; PFAM: glycosyl transferase, family 3; Pyrimidine nucleoside phosphorylase, C-terminal domain; KEGG: rpc:RPC_4089 pyrimidine nucleoside phosphorylase-like.


ensembl_gene_id: RPE_4152
symbol: RPE_4152
gene_biotype: protein_coding
description:
  TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rpc:RPC_4093 hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: RPE_4153
symbol: RPE_4153
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpd:RPD_3897 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: RPE_4154
symbol: RPE_4154
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4100 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_4155
symbol: RPE_4155
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4101 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4156
symbol: RPE_4156
gene_biotype: protein_coding
description:
  PFAM: Rubrerythrin; protein of unknown function DUF125, transmembrane; KEGG: rpd:RPD_3902 rubrerythrin.


ensembl_gene_id: RPE_4158
symbol: RPE_4158
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_4105 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4159
symbol: RPE_4159
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_4104 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4160
symbol: RPE_4160
gene_biotype: protein_coding
description:
  TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpc:RPC_4106 D-3-phosphoglycerate dehydrogenase.


ensembl_gene_id: RPE_4161
symbol: RPE_4161
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: RPE_4164
symbol: RPE_4164
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpa:RPA4314 possible glutathione S-transferase; Belongs to the GST superfamily.


ensembl_gene_id: RPE_4167
symbol: RPE_4167
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: rpa:RPA4317 putative fosmidomycin resistance protein.


ensembl_gene_id: RPE_4168
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: RPE_4170
symbol: RPE_4170
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: rpd:RPD_3916 L-lactate dehydrogenase (cytochrome).


ensembl_gene_id: RPE_4171
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: RPE_4172
symbol: RPE_4172
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4118 transcriptional regulator, XRE family.


ensembl_gene_id: RPE_4173
symbol: RPE_4173
gene_biotype: protein_coding
description:
  TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: rpc:RPC_4119 small GTP-binding protein domain.


ensembl_gene_id: RPE_4177
symbol: RPE_4177
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rpc:RPC_4124 glutathione S-transferase-like; Belongs to the GST superfamily.


ensembl_gene_id: RPE_4180
symbol: RPE_4180
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; KEGG: rpc:RPC_4127 phospholipid/glycerol acyltransferase.


ensembl_gene_id: RPE_4185
symbol: RPE_4185
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_4133 HAD-superfamily hydrolase subfamily IA, variant 3.


ensembl_gene_id: RPE_4186
symbol: RPE_4186
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpc:RPC_4134 glutathione S-transferase-like.


ensembl_gene_id: RPE_4187
symbol: RPE_4187
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rpb:RPB_4144 glutathione S-transferase-like; Belongs to the GST superfamily.


ensembl_gene_id: RPE_4191
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: RPE_4198
symbol: RPE_4198
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_3991 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RPE_4199
symbol: RPE_4199
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4147 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4203
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: RPE_4204
symbol: RPE_4204
gene_biotype: protein_coding
description:
  PFAM: S-adenosylmethionine synthetase; KEGG: rpc:RPC_4154 methionine adenosyltransferase; Belongs to the AdoMet synthase family.


ensembl_gene_id: RPE_4207
symbol: RPE_4207
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; peptidase C14, caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5947 hypothetical protein.


ensembl_gene_id: RPE_4209
symbol: RPE_4209
gene_biotype: protein_coding
description:
  PFAM: Methionine synthase, vitamin-B12 independent; KEGG: rpb:RPB_1584 methionine synthase, vitamin-B12 independent.


ensembl_gene_id: RPE_4210
symbol: RPE_4210
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4025 putative branched-chain amino acid ABC transport system ATP-binding protein.


ensembl_gene_id: RPE_4212
symbol: RPE_4212
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bja:bll5951 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_4213
symbol: RPE_4213
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpa:RPA4028 possible ABC transport system permease protein.


ensembl_gene_id: RPE_4215
symbol: RPE_4215
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_1586 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_4218
symbol: RPE_4218
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: rpc:RPC_4163 polysaccharide biosynthesis protein CapD.


ensembl_gene_id: RPE_4219
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: RPE_4222
symbol: RPE_4222
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpc:RPC_4168 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_4223
symbol: RPE_4223
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_1578 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_4225
symbol: RPE_4225
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4038 possible ABC transport system ATP-binding protein.


ensembl_gene_id: RPE_4229
symbol: RPE_4229
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_1568 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_4230
symbol: RPE_4230
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpc:RPC_4178 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_4231
symbol: RPE_4231
gene_biotype: protein_coding
description:
  KEGG: rpa:RPA4045 possible branched-chain amino acid ABC transport system substrate-binding protein.


ensembl_gene_id: RPE_4234
symbol: RPE_4234
gene_biotype: protein_coding
description:
  PFAM: aldehyde dehydrogenase; KEGG: gvi:glr3848 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RPE_4238
symbol: RPE_4238
gene_biotype: protein_coding
description:
  PFAM: Transketolase domain protein; Transketolase, central region; KEGG: sma:SAV1891 putative transketolase.


ensembl_gene_id: RPE_4239
symbol: RPE_4239
gene_biotype: protein_coding
description:
  PFAM: acylneuraminate cytidylyltransferase; KEGG: nmu:Nmul_A0410 acylneuraminate cytidylyltransferase.


ensembl_gene_id: RPE_4240
symbol: RPE_4240
gene_biotype: protein_coding
description:
  TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: sco:SCO4880 transferase.


ensembl_gene_id: RPE_4252
symbol: RPE_4252
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sdn:Sden_2654 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: RPE_4253
symbol: RPE_4253
gene_biotype: protein_coding
description:
  TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: tbd:Tbd_1881 alpha-D-glucose-1-phosphate cytidylyltransferase.


ensembl_gene_id: RPE_4254
symbol: RPE_4254
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: yps:YPTB1000 CDP-glucose 4,6-dehydratase.


ensembl_gene_id: RPE_4255
symbol: RPE_4255
gene_biotype: protein_coding
description:
  C-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: bms:BRA0438 methyltransferase, putative.


ensembl_gene_id: RPE_4256
symbol: RPE_4256
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: RPE_4259
symbol: RPE_4259
gene_biotype: protein_coding
description:
  PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: bca:BCE0975 alginate O-acetyltransferase, putative; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: RPE_4260
symbol: RPE_4260
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: gox:GOX1611 GDP-6-deoxy-D-lyxo-4-hexulose reductase.


ensembl_gene_id: RPE_4261
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: RPE_4267
symbol: RPE_4267
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpc:RPC_4228 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_4269
symbol: RPE_4269
gene_biotype: protein_coding
description:
  Flagellar protein export ATPase FliI; KEGG: rpc:RPC_4232 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.


ensembl_gene_id: RPE_4270
symbol: RPE_4270
gene_biotype: protein_coding
description:
  Two-component system, cell cycle response regulator CtrA; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpd:RPD_3672 response regulator receiver.


ensembl_gene_id: RPE_4271
symbol: RPE_4271
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: dar:Daro_1236 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: RPE_4274
symbol: RPE_4274
gene_biotype: protein_coding
description:
  PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bxe:Bxe_B2779 amino acid efflux pump, RhtB family, LysE superfamily.


ensembl_gene_id: RPE_4276
symbol: RPE_4276
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; KEGG: bja:blr2933 probable aerotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: RPE_4279
symbol: RPE_4279
gene_biotype: protein_coding
description:
  Mannose-6-phosphate isomerase; PFAM: N-acylglucosamine 2-epimerase; KEGG: rpc:RPC_4240 N-acylglucosamine 2-epimerase.


ensembl_gene_id: RPE_4282
symbol: RPE_4282
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_4245 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_4284
symbol: RPE_4284
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinases; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4247 CheA signal transduction histidine kinases.


ensembl_gene_id: RPE_4286
symbol: cysQ
gene_biotype: protein_coding
description:
  Inositol monophosphatase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.


ensembl_gene_id: RPE_4288
symbol: RPE_4288
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised conserved protein UCP033924; KEGG: rpc:RPC_4251 uncharacterised conserved protein UCP033924.


ensembl_gene_id: RPE_4292
symbol: RPE_4292
gene_biotype: protein_coding
description:
  TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: rpc:RPC_1961 cobalt ABC transporter CbiQ, permease subunit.


ensembl_gene_id: RPE_4294
symbol: RPE_4294
gene_biotype: protein_coding
description:
  PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rpc:RPC_1959 cobalamin (vitamin B12) biosynthesis CbiM protein.


ensembl_gene_id: RPE_4300
symbol: RPE_4300
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpc:RPC_4260 thiamine pyrophosphate enzyme-like TPP-binding.


ensembl_gene_id: RPE_4305
symbol: RPE_4305
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: bja:blr7248 benzoylformate decarboxylase; Belongs to the TPP enzyme family.


ensembl_gene_id: RPE_4307
symbol: RPE_4307
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpc:RPC_4266 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: RPE_4308
symbol: RPE_4308
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA1612 putative acyl-CoA dehydrogenase.


ensembl_gene_id: RPE_4310
symbol: RPE_4310
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_3693 isovaleryl-CoA dehydrogenase.


ensembl_gene_id: RPE_4313
symbol: RPE_4313
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: rpc:RPC_4270 protein of unknown function DUF463, YcjX-like protein.


ensembl_gene_id: RPE_4315
symbol: RPE_4315
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: nwi:Nwi_3054 cold-shock protein, DNA-binding.


ensembl_gene_id: RPE_4317
symbol: RPE_4317
gene_biotype: protein_coding
description:
  L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RPE_4318
symbol: RPE_4318
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpb:RPB_3947 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: RPE_4323
symbol: RPE_4323
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpd:RPD_3715 carbon-monoxide dehydrogenase.


ensembl_gene_id: RPE_4326
symbol: RPE_4326
gene_biotype: protein_coding
description:
  PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpb:RPB_4234 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.


ensembl_gene_id: RPE_4327
symbol: RPE_4327
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpd:RPD_4086 glutathione S-transferase-like.


ensembl_gene_id: RPE_4328
symbol: RPE_4328
gene_biotype: protein_coding
description:
  TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: rpc:RPC_1345 methylated-DNA--protein-cysteine methyltransferase.


ensembl_gene_id: RPE_4337
symbol: clpB
gene_biotype: protein_coding
description:
  ATPase AAA-2 domain protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: RPE_4339
symbol: RPE_4339
gene_biotype: protein_coding
description:
  TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_4280 methionine biosynthesis MetW.


ensembl_gene_id: RPE_4340
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: RPE_4342
symbol: hisC
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: rpc:RPC_4283 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: RPE_4343
symbol: RPE_4343
gene_biotype: protein_coding
description:
  PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpd:RPD_4102 prephenate dehydrogenase.


ensembl_gene_id: RPE_4345
symbol: RPE_4345
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: bxe:Bxe_A1049 transcriptional regulator, AraC family.


ensembl_gene_id: RPE_4346
symbol: RPE_4346
gene_biotype: protein_coding
description:
  PFAM: Cupin 2, conserved barrel domain protein; KEGG: pca:Pcar_2409 mannose-6-phosphate isomerase-like.


ensembl_gene_id: RPE_4349
symbol: RPE_4349
gene_biotype: protein_coding
description:
  PFAM: Mg2+ transporter protein, CorA family protein; KEGG: rpc:RPC_4290 Mg2+ transporter protein, CorA-like.


ensembl_gene_id: RPE_4356
symbol: RPE_4356
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_1264 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_4357
symbol: RPE_4357
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.


ensembl_gene_id: RPE_4358
symbol: RPE_4358
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: RPE_4360
symbol: RPE_4360
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpc:RPC_4303 transcriptional regulator, Crp/Fnr family.


ensembl_gene_id: RPE_4362
symbol: RPE_4362
gene_biotype: protein_coding
description:
  Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4756 putative plasmid maintenance system antidote protein, XRE family.


ensembl_gene_id: RPE_4363
symbol: ilvD
gene_biotype: protein_coding
description:
  KEGG: bmb:BruAb1_0096 IlvD, dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: RPE_4366
symbol: RPE_4366
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4318 ModD protein; TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.


ensembl_gene_id: RPE_4369
symbol: RPE_4369
gene_biotype: protein_coding
description:
  TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: rpc:RPC_4315 nitrogenase-associated protein; Belongs to the ArsC family.


ensembl_gene_id: RPE_4380
symbol: RPE_4380
gene_biotype: protein_coding
description:
  Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: RPE_4383
symbol: RPE_4383
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF159; KEGG: rpc:RPC_4325 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: RPE_4389
symbol: RPE_4389
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4330 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase.


ensembl_gene_id: RPE_4390
symbol: RPE_4390
gene_biotype: protein_coding
description:
  PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: rpc:RPC_4331 glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.


ensembl_gene_id: RPE_4391
symbol: RPE_4391
gene_biotype: protein_coding
description:
  KEGG: bja:bll2553 3-methyladenine-DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase.


ensembl_gene_id: RPE_4393
symbol: RPE_4393
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rpa:RPA1065 metal dependent phosphohydrolase.


ensembl_gene_id: RPE_4397
symbol: RPE_4397
gene_biotype: protein_coding
description:
  PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: ret:RHE_CH02180 putative adenylate cyclase protein.


ensembl_gene_id: RPE_4399
symbol: RPE_4399
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_1230 alcohol dehydrogenase, zinc-binding.


ensembl_gene_id: RPE_4400
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: RPE_4402
symbol: RPE_4402
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_1105 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.


ensembl_gene_id: RPE_4405
symbol: RPE_4405
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4343 pyruvate, phosphate dikinase; TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilizing enzyme; pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region.


ensembl_gene_id: RPE_4411
symbol: glyQ
gene_biotype: protein_coding
description:
  Glycine--tRNA ligase; PFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: rpd:RPD_1219 glycine--tRNA ligase.


ensembl_gene_id: RPE_4413
symbol: RPE_4413
gene_biotype: protein_coding
description:
  Peptidase S49; PFAM: Enoyl-CoA hydratase/isomerase; peptidase S49; KEGG: rpc:RPC_4351 peptidase S49.


ensembl_gene_id: RPE_4414
symbol: RPE_4414
gene_biotype: protein_coding
description:
  PFAM: methyltransferase small; Methyltransferase type 12; KEGG: rpc:RPC_4352 methyltransferase small; Belongs to the methyltransferase superfamily.


ensembl_gene_id: RPE_4416
symbol: RPE_4416
gene_biotype: protein_coding
description:
  Farnesyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: rpa:RPA1040 octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: RPE_4419
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: RPE_4420
symbol: RPE_4420
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_4357 tetratricopeptide TPR_2.


ensembl_gene_id: RPE_4421
symbol: RPE_4421
gene_biotype: protein_coding
description:
  Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.


ensembl_gene_id: RPE_4422
symbol: RPE_4422
gene_biotype: protein_coding
description:
  TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rpc:RPC_4359 phage SPO1 DNA polymerase-related protein.


ensembl_gene_id: RPE_4424
symbol: rnhB
gene_biotype: protein_coding
description:
  RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.


ensembl_gene_id: RPE_4425
symbol: RPE_4425
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_4362 radical SAM.


ensembl_gene_id: RPE_4427
symbol: RPE_4427
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family with acetyltransferase activity; PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: bja:bll2512 putative acetyltransferase.


ensembl_gene_id: RPE_4429
symbol: RPE_4429
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: RPE_4430
symbol: RPE_4430
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: rpc:RPC_4365 protein of unknown function, zinc metallopeptidase putative.


ensembl_gene_id: RPE_4431
symbol: RPE_4431
gene_biotype: protein_coding
description:
  PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpc:RPC_4366 DNA methylase N-4/N-6; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: RPE_4434
symbol: RPE_4434
gene_biotype: protein_coding
description:
  Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4370 plasmid maintenance system antidote protein, XRE family.


ensembl_gene_id: RPE_4436
symbol: RPE_4436
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_4372 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_4440
symbol: RPE_4440
gene_biotype: protein_coding
description:
  HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B; PFAM: peptidase M48, Ste24p; KEGG: rpb:RPB_4314 peptidase M48, Ste24p.


ensembl_gene_id: RPE_4443
symbol: smc
gene_biotype: protein_coding
description:
  Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: RPE_4447
symbol: RPE_4447
gene_biotype: protein_coding
description:
  Anthranilate synthase, component II / anthranilate synthase, component I; TIGRFAM: glutamine amidotransferase of anthranilate synthase; anthranilate synthase; PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: rpa:RPA4498 anthranilate synthase.


ensembl_gene_id: RPE_4450
symbol: RPE_4450
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpd:RPD_4215 methyltransferase type 12.


ensembl_gene_id: RPE_4456
symbol: RPE_4456
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_4397 tetratricopeptide TPR_2.


ensembl_gene_id: RPE_4457
symbol: RPE_4457
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_4459
symbol: RPE_4459
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpa:RPA4507 elongator protein 3/MiaB/NifB.


ensembl_gene_id: RPE_4461
symbol: RPE_4461
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_4399 TRAP transporter, 4TM/12TM fusion protein.


ensembl_gene_id: RPE_4462
symbol: RPE_4462
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rpc:RPC_4400 TRAP transporter solute receptor, TAXI family.


ensembl_gene_id: RPE_4463
symbol: RPE_4463
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Uncharacterized protein UPF0065; KEGG: rpb:RPB_4334 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_4465
symbol: RPE_4465
gene_biotype: protein_coding
description:
  Response regulator receiver modulated diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rpd:RPD_4230 putative cylclic diguanylate phosphodiesterase.


ensembl_gene_id: RPE_4468
symbol: RPE_4468
gene_biotype: protein_coding
description:
  KEGG: zmo:ZMO1548 squalene--hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.


ensembl_gene_id: RPE_4473
symbol: RPE_4473
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rru:Rru_A2442 transcriptional regulator, XRE family.


ensembl_gene_id: RPE_4477
symbol: RPE_4477
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: ftl:FTL_1126 transcriptional regulator.


ensembl_gene_id: RPE_4479
symbol: yacG
gene_biotype: protein_coding
description:
  Protein of unknown function DUF329; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.


ensembl_gene_id: RPE_4480
symbol: RPE_4480
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: RPE_4482
symbol: RPE_4482
gene_biotype: protein_coding
description:
  PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rpc:RPC_4415 protein tyrosine phosphatase.


ensembl_gene_id: RPE_4483
symbol: RPE_4483
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised conserved protein UCP032146; KEGG: rpb:RPB_4349 uncharacterised conserved protein UCP032146; Belongs to the UPF0262 family.


ensembl_gene_id: RPE_4484
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: RPE_4488
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: RPE_4494
symbol: RPE_4494
gene_biotype: protein_coding
description:
  PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: rpc:RPC_4421 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: RPE_4496
symbol: RPE_4496
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: rpd:RPD_2373 regulatory protein, LuxR.


ensembl_gene_id: RPE_4497
symbol: RPE_4497
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; KEGG: rpd:RPD_2372 regulatory protein, LuxR.


ensembl_gene_id: RPE_4500
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: RPE_4501
symbol: RPE_4501
gene_biotype: protein_coding
description:
  PFAM: CutA1 divalent ion tolerance protein; KEGG: rpa:RPA0707 putative periplasmic divalent cation resistance protein CutA.


ensembl_gene_id: RPE_4503
symbol: RPE_4503
gene_biotype: protein_coding
description:
  PFAM: ADP-ribosylation/Crystallin J1; SMART: protein tyrosine phosphatase, catalytic region; KEGG: rpc:RPC_0422 ADP-ribosylation/crystallin J1.


ensembl_gene_id: RPE_4506
symbol: RPE_4506
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_1275 putative methyltransferase.


ensembl_gene_id: RPE_4508
symbol: RPE_4508
gene_biotype: protein_coding
description:
  PFAM: Mg2+ transporter protein, CorA family protein; KEGG: rpc:RPC_1278 Mg2+ transporter protein, CorA-like.


ensembl_gene_id: RPE_4512
symbol: RPE_4512
gene_biotype: protein_coding
description:
  TIGRFAM: Molybdenum-pterin binding; PFAM: TOBE domain protein; KEGG: rpc:RPC_4442 molybdenum-pterin binding domain.


ensembl_gene_id: RPE_4513
symbol: RPE_4513
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpc:RPC_4443 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: RPE_4514
symbol: ahpD
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: RPE_4516
symbol: RPE_4516
gene_biotype: protein_coding
description:
  Electron-transferring-flavoprotein dehydrogenase; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.


ensembl_gene_id: RPE_4517
symbol: RPE_4517
gene_biotype: protein_coding
description:
  PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpc:RPC_4447 electron transfer flavoprotein beta-subunit.


ensembl_gene_id: RPE_4518
symbol: RPE_4518
gene_biotype: protein_coding
description:
  PFAM: electron transfer flavoprotein beta-subunit; KEGG: rpc:RPC_4448 electron transfer flavoprotein beta-subunit.


ensembl_gene_id: RPE_4519
symbol: nifW
gene_biotype: protein_coding
description:
  Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.


ensembl_gene_id: RPE_4520
symbol: RPE_4520
gene_biotype: protein_coding
description:
  TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: rpc:RPC_4450 pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: RPE_4521
symbol: RPE_4521
gene_biotype: protein_coding
description:
  Aminotransferase, class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.


ensembl_gene_id: RPE_4522
symbol: RPE_4522
gene_biotype: protein_coding
description:
  Nitrogen-fixing NifU domain protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.


ensembl_gene_id: RPE_4523
symbol: RPE_4523
gene_biotype: protein_coding
description:
  TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpa:RPA4610 protein of unknown function, HesB/YadR/YfhF; Belongs to the HesB/IscA family.


ensembl_gene_id: RPE_4525
symbol: RPE_4525
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpa:RPA4612 ferredoxin 2[4Fe-4S] III, FdxB.


ensembl_gene_id: RPE_4528
symbol: RPE_4528
gene_biotype: protein_coding
description:
  TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: rpc:RPC_4458 dinitrogenase iron-molybdenum cofactor biosynthesis.


ensembl_gene_id: RPE_4529
symbol: RPE_4529
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4459 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase, component 1; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: RPE_4530
symbol: RPE_4530
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4460 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase, component 1; BFD domain protein [2Fe-2S]-binding domain protein; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: RPE_4531
symbol: RPE_4531
gene_biotype: protein_coding
description:
  Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: RPE_4532
symbol: RPE_4532
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4462 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1.


ensembl_gene_id: RPE_4539
symbol: RPE_4539
gene_biotype: protein_coding
description:
  TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpc:RPC_4470 HesB/YadR/YfhF; Belongs to the HesB/IscA family.


ensembl_gene_id: RPE_4540
symbol: RPE_4540
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpc:RPC_4471 4Fe-4S ferredoxin, iron-sulfur binding.


ensembl_gene_id: RPE_4541
symbol: RPE_4541
gene_biotype: protein_coding
description:
  TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM domain protein; KEGG: rpc:RPC_4472 nitrogenase cofactor biosynthesis protein NifB.


ensembl_gene_id: RPE_4542
symbol: RPE_4542
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpc:RPC_4473 4Fe-4S ferredoxin, iron-sulfur binding.


ensembl_gene_id: RPE_4543
symbol: RPE_4543
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4475 transcriptional regulator, NifA, fis family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.


ensembl_gene_id: RPE_4544
symbol: RPE_4544
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_4476 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_4546
symbol: RPE_4546
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll3856 probable medium-chain-fatty-acid--CoA ligase.


ensembl_gene_id: RPE_4548
symbol: RPE_4548
gene_biotype: protein_coding
description:
  PFAM: antenna complex, alpha/beta subunit; KEGG: rpa:RPA2654 light harvesting protein B-800-850, beta chain A (antenna pigment protein, beta chain A) (LH II-A beta).


ensembl_gene_id: RPE_4549
symbol: RPE_4549
gene_biotype: protein_coding
description:
  PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase, HAMP region domain protein; KEGG: rpa:RPA1965 putative adenylate/guanylate cyclase.


ensembl_gene_id: RPE_4551
symbol: RPE_4551
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rpc:RPC_4525 major facilitator superfamily MFS_1.


ensembl_gene_id: RPE_4552
symbol: RPE_4552
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.


ensembl_gene_id: RPE_4553
symbol: RPE_4553
gene_biotype: protein_coding
description:
  Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.


ensembl_gene_id: RPE_4560
symbol: RPE_4560
gene_biotype: protein_coding
description:
  PFAM: Calcium-binding EF-hand-containing protein; KEGG: rpb:RPB_2375 calcium-binding EF-hand protein.


ensembl_gene_id: RPE_4561
symbol: RPE_4561
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpb:RPB_2374 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_4562
symbol: RPE_4562
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_2373 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_4567
symbol: RPE_4567
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4527 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4569
symbol: RPE_4569
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_4529 carbon-monoxide dehydrogenase.


ensembl_gene_id: RPE_4570
symbol: RPE_4570
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpc:RPC_4530 carbon-monoxide dehydrogenase.


ensembl_gene_id: RPE_4577
symbol: RPE_4577
gene_biotype: protein_coding
description:
  PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: nha:Nham_3637 2OG-Fe(II) oxygenase.


ensembl_gene_id: RPE_4578
symbol: RPE_4578
gene_biotype: protein_coding
description:
  TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nha:Nham_3638 TonB-dependent siderophore receptor.


ensembl_gene_id: RPE_4580
symbol: RPE_4580
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_4541 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: RPE_4582
symbol: secA2
gene_biotype: protein_coding
description:
  Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: RPE_4584
symbol: RPE_4584
gene_biotype: protein_coding
description:
  PFAM: MscS Mechanosensitive ion channel; KEGG: bxe:Bxe_A2257 small-conductance mechanosensitive ion channel.


ensembl_gene_id: RPE_4589
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: RPE_4591
symbol: RPE_4591
gene_biotype: protein_coding
description:
  Enoyl-[acyl-carrier-protein] reductase (NADH); PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_1140 enoyl-acyl carrier protein reductase.


ensembl_gene_id: RPE_4592
symbol: RPE_4592
gene_biotype: protein_coding
description:
  PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rpc:RPC_1138 chaperone DnaJ-like.


ensembl_gene_id: RPE_4594
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: RPE_4595
symbol: RPE_4595
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA1195 short-chain dehydrogenase.


ensembl_gene_id: RPE_4596
symbol: RPE_4596
gene_biotype: protein_coding
description:
  TIGRFAM: putative regulatory protein, FmdB family; KEGG: rpa:RPA1256 putative formamidase regulatory protein FmdB.


ensembl_gene_id: RPE_4600
symbol: RPE_4600
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_3862 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_4601
symbol: RPE_4601
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpb:RPB_1253 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_4603
symbol: RPE_4603
gene_biotype: protein_coding
description:
  Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_1251 multi-sensor hybrid histidine kinase.


ensembl_gene_id: RPE_4604
symbol: RPE_4604
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpd:RPD_3866 response regulator receiver.


ensembl_gene_id: RPE_4611
symbol: RPE_4611
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: nha:Nham_2537 transcriptional regulator-related protein.


ensembl_gene_id: RPE_4612
symbol: purD
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4619 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family.


ensembl_gene_id: RPE_4617
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: RPE_4618
symbol: glk
gene_biotype: protein_coding
description:
  Glucokinase; KEGG: rpc:RPC_4623 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; Belongs to the bacterial glucokinase family.


ensembl_gene_id: RPE_4624
symbol: kdpA
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase, A subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: RPE_4625
symbol: kdpB
gene_biotype: protein_coding
description:
  K+-transporting ATPase, B subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: RPE_4626
symbol: kdpC
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: RPE_4627
symbol: RPE_4627
gene_biotype: protein_coding
description:
  Osmosensitive K+ channel signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; KEGG: rpb:RPB_4648 osmosensitive K+ channel signal transduction histidine kinase.


ensembl_gene_id: RPE_4628
symbol: RPE_4628
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpb:RPB_4649 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_4629
symbol: RPE_4629
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: bja:bll6060 putative catabolite gene activator.


ensembl_gene_id: RPE_4635
symbol: cynS
gene_biotype: protein_coding
description:
  Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.


ensembl_gene_id: RPE_4637
symbol: RPE_4637
gene_biotype: protein_coding
description:
  TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_2055 nitrate transport permease.


ensembl_gene_id: RPE_4638
symbol: RPE_4638
gene_biotype: protein_coding
description:
  ABC-type nitrate transport system periplasmic component; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_2054 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_4639
symbol: RPE_4639
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_2053 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase.


ensembl_gene_id: RPE_4642
symbol: RPE_4642
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sil:SPOA0205 serine protease, subtilase family.


ensembl_gene_id: RPE_4643
symbol: RPE_4643
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6, chymotrypsin/Hap; phospholipase D/Transphosphatidylase; KEGG: rpc:RPC_3413 hypothetical protein.


ensembl_gene_id: RPE_4644
symbol: RPE_4644
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: rpa:RPA0737 putative oxalate/formate major facilitator superfamily (MFS) antiporter.


ensembl_gene_id: RPE_4646
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: RPE_4647
symbol: RPE_4647
gene_biotype: protein_coding
description:
  TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpc:RPC_4645 formate dehydrogenase, alpha subunit.


ensembl_gene_id: RPE_4648
symbol: RPE_4648
gene_biotype: protein_coding
description:
  PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rpc:RPC_4646 NADH dehydrogenase (quinone).


ensembl_gene_id: RPE_4649
symbol: RPE_4649
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rpc:RPC_4647 NADH dehydrogenase (ubiquinone), 24 kDa subunit.


ensembl_gene_id: RPE_4650
symbol: RPE_4650
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_4648 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_4651
symbol: RPE_4651
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: rpb:RPB_4300 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_4652
symbol: RPE_4652
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bja:bll5772 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_4655
symbol: RPE_4655
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4653 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_4656
symbol: RPE_4656
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4654 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_4658
symbol: RPE_4658
gene_biotype: protein_coding
description:
  TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rpc:RPC_4657 heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_4659
symbol: RPE_4659
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpc:RPC_4658 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_4662
symbol: RPE_4662
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4661 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4663
symbol: RPE_4663
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4662 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_4665
symbol: RPE_4665
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: rpc:RPC_4664 ABC transporter related.


ensembl_gene_id: RPE_4672
symbol: RPE_4672
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4672 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4673
symbol: RPE_4673
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4674 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4675
symbol: RPE_4675
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4676 CheA signal transduction histidine kinases.


ensembl_gene_id: RPE_4676
symbol: RPE_4676
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_4677 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_4677
symbol: RPE_4677
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rpc:RPC_4678 anti-sigma-factor antagonist (STAS) domain protein.


ensembl_gene_id: RPE_4678
symbol: RPE_4678
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA1955 glutathione dependent formaldehyde dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.


ensembl_gene_id: RPE_4679
symbol: gfa
gene_biotype: protein_coding
description:
  Glutathione-dependent formaldehyde-activating, GFA; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family.


ensembl_gene_id: RPE_4683
symbol: RPE_4683
gene_biotype: protein_coding
description:
  TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:blr6189 hypothetical protein.


ensembl_gene_id: RPE_4689
symbol: RPE_4689
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_4731 ABC transporter-like.


ensembl_gene_id: RPE_4692
symbol: RPE_4692
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: rpc:RPC_4734 protein of unknown function DUF224, cysteine-rich region.


ensembl_gene_id: RPE_4699
symbol: ftsH
gene_biotype: protein_coding
description:
  Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: RPE_4700
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: RPE_4701
symbol: cpoB
gene_biotype: protein_coding
description:
  Tetratricopeptide TPR_2 repeat protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: RPE_4702
symbol: pal
gene_biotype: protein_coding
description:
  OmpA/MotB domain protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: RPE_4703
symbol: RPE_4703
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rpc:RPC_0740 transcriptional regulator, AraC family.


ensembl_gene_id: RPE_4706
symbol: RPE_4706
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpc:RPC_4750 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).


ensembl_gene_id: RPE_4707
symbol: tolB
gene_biotype: protein_coding
description:
  Transport system periplasmic component; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: RPE_4709
symbol: RPE_4709
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_4753 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: RPE_4710
symbol: tolQ
gene_biotype: protein_coding
description:
  MotA/TolQ/ExbB proton channel; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: RPE_4716
symbol: RPE_4716
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_4158 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_4723
symbol: RPE_4723
gene_biotype: protein_coding
description:
  Transcriptional modulator of MazE/toxin, MazF; PFAM: PemK family protein; KEGG: rpa:RPA0941 hypothetical protein.


ensembl_gene_id: RPE_4725
symbol: pgk
gene_biotype: protein_coding
description:
  PFAM: phosphoglycerate kinase; KEGG: rpc:RPC_4770 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: RPE_4728
symbol: RPE_4728
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4767 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: RPE_4731
symbol: RPE_4731
gene_biotype: protein_coding
description:
  Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: RPE_4733
symbol: RPE_4733
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: bja:bll6496 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_4735
symbol: RPE_4735
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpd:RPD_4160 sigma-70 region 2; Belongs to the sigma-70 factor family.


ensembl_gene_id: RPE_4736
symbol: RPE_4736
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpc:RPC_4762 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: RPE_4737
symbol: RPE_4737
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_4760 drug resistance transporter Bcr/CflA subfamily.


ensembl_gene_id: RPE_4742
symbol: RPE_4742
gene_biotype: protein_coding
description:
  TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: rpc:RPC_4781 carboxylyase-related protein; Belongs to the UbiD family.


ensembl_gene_id: RPE_4743
symbol: ubiX
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: RPE_4746
symbol: RPE_4746
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rpd:RPD_4332 helix-turn-helix type 3.


ensembl_gene_id: RPE_4747
symbol: RPE_4747
gene_biotype: protein_coding
description:
  Microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rpc:RPC_4785 peptidase U62, modulator of DNA gyrase.


ensembl_gene_id: RPE_4751
symbol: RPE_4751
gene_biotype: protein_coding
description:
  Cytochrome-c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: RPE_4752
symbol: RPE_4752
gene_biotype: protein_coding
description:
  Cytochrome-c oxidase; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: RPE_4753
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: RPE_4755
symbol: ctaG
gene_biotype: protein_coding
description:
  Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.


ensembl_gene_id: RPE_4759
symbol: RPE_4759
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4795 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: RPE_4760
symbol: RPE_4760
gene_biotype: protein_coding
description:
  PFAM: peptidase M16 domain protein; KEGG: rpc:RPC_4796 peptidase M16-like; Belongs to the peptidase M16 family.


ensembl_gene_id: RPE_4763
symbol: RPE_4763
gene_biotype: protein_coding
description:
  TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_4799 4-hydroxybenzoyl-CoA thioesterase.


ensembl_gene_id: RPE_4767
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: RPE_4769
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: RPE_4770
symbol: ruvC
gene_biotype: protein_coding
description:
  Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: RPE_4772
symbol: RPE_4772
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: rpc:RPC_4808 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_4773
symbol: RPE_4773
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_4810 radical SAM.


ensembl_gene_id: RPE_4774
symbol: RPE_4774
gene_biotype: protein_coding
description:
  TIGRFAM: conserved hypothetical protein; PFAM: metallophosphoesterase; KEGG: rpc:RPC_4811 hypothetical protein.


ensembl_gene_id: RPE_4775
symbol: RPE_4775
gene_biotype: protein_coding
description:
  PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rpc:RPC_4812 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: RPE_4776
symbol: atpF1
gene_biotype: protein_coding
description:
  H+-transporting two-sector ATPase, B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: RPE_4777
symbol: atpF2
gene_biotype: protein_coding
description:
  H+-transporting two-sector ATPase, B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity).


ensembl_gene_id: RPE_4778
symbol: atpE
gene_biotype: protein_coding
description:
  H+-transporting two-sector ATPase, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: RPE_4779
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: RPE_4780
symbol: RPE_4780
gene_biotype: protein_coding
description:
  FoF1 ATP synthase, subunit I; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.


ensembl_gene_id: RPE_4784
symbol: RPE_4784
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rpd:RPD_0835 general substrate transporter.


ensembl_gene_id: RPE_4785
symbol: RPE_4785
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rpc:RPC_4822 two component transcriptional regulator, LuxR family.


ensembl_gene_id: RPE_4786
symbol: RPE_4786
gene_biotype: protein_coding
description:
  Periplasmic sensor hybrid histidine kinase; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4823 periplasmic sensor hybrid histidine kinase.


ensembl_gene_id: RPE_4787
symbol: RPE_4787
gene_biotype: protein_coding
description:
  KEGG: rpa:RPA0854 5-aminolevulinic acid synthase (ALAS); TIGRFAM: 5-aminolevulinic acid synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; aminotransferase class-III.


ensembl_gene_id: RPE_4789
symbol: RPE_4789
gene_biotype: protein_coding
description:
  PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: rpc:RPC_4826 OmpA-like transmembrane region.


ensembl_gene_id: RPE_4793
symbol: RPE_4793
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: rpb:RPB_4557 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: RPE_4794
symbol: RPE_4794
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rpb:RPB_4556 cobalamin synthesis protein, P47K.


ensembl_gene_id: RPE_4802
symbol: RPE_4802
gene_biotype: protein_coding
description:
  PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rpc:RPC_4837 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: RPE_4804
symbol: RPE_4804
gene_biotype: protein_coding
description:
  Peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: rpc:RPC_4839 peptidyl-dipeptidase DCP.


ensembl_gene_id: RPE_4806
symbol: RPE_4806
gene_biotype: protein_coding
description:
  PFAM: high-affinity nickel-transporter; KEGG: rpc:RPC_4841 high-affinity nickel-transporter; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: RPE_4807
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: RPE_4811
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: RPE_4812
symbol: RPE_4812
gene_biotype: protein_coding
description:
  Conserved hypothetical protein 103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: RPE_4813
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: RPE_4818
symbol: RPE_4818
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_0505 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD/DEAH box helicase domain protein.


ensembl_gene_id: RPE_4821
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: RPE_4822
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: RPE_4826
symbol: RPE_4826
gene_biotype: protein_coding
description:
  Glycogen/starch/alpha-glucan phosphorylases; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: RPE_4828
symbol: RPE_4828
gene_biotype: protein_coding
description:
  ChaC family protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.


ensembl_gene_id: RPE_4829
symbol: RPE_4829
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; KEGG: rpc:RPC_4864 phospholipid/glycerol acyltransferase.


ensembl_gene_id: RPE_4832
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: RPE_4840
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: RPE_4847
symbol: RPE_4847
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rpc:RPC_4878 3-hydroxybutyryl-CoA dehydrogenase.


ensembl_gene_id: RPE_4848
symbol: RPE_4848
gene_biotype: protein_coding
description:
  PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpd:RPD_0931 electron transfer flavoprotein, alpha subunit.


ensembl_gene_id: RPE_4849
symbol: RPE_4849
gene_biotype: protein_coding
description:
  PFAM: electron transfer flavoprotein beta-subunit; KEGG: rpa:RPA4750 electron transfer flavoprotein beta chain, (ETFSS).


ensembl_gene_id: RPE_4850
symbol: RPE_4850
gene_biotype: protein_coding
description:
  TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rpc:RPC_4881 ATP; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: RPE_4853
symbol: RPE_4853
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4884 histidine kinase.


ensembl_gene_id: RPE_4854
symbol: RPE_4854
gene_biotype: protein_coding
description:
  PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: rpc:RPC_4885 glutamyl-tRNA synthetase, class Ic; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: RPE_4862
symbol: RPE_4862
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpa:RPA4322 response regulator receiver (CheY-like protein).


ensembl_gene_id: RPE_4863
symbol: RPE_4863
gene_biotype: protein_coding
description:
  PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: rpc:RPC_4889 PAS/PAC sensor hybrid histidine kinase.


ensembl_gene_id: RPE_4865
symbol: RPE_4865
gene_biotype: protein_coding
description:
  PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: rpa:RPA4759 glycosyl hydrolase, family 13.


ensembl_gene_id: RPE_4868
symbol: RPE_4868
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase, beta domain protein region; KEGG: rpd:RPD_1926 DNA polymerase, beta-like region.


ensembl_gene_id: RPE_4869
symbol: RPE_4869
gene_biotype: protein_coding
description:
  TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: rpc:RPC_4898 methylated-DNA--protein-cysteine methyltransferase.


ensembl_gene_id: RPE_4872
symbol: RPE_4872
gene_biotype: protein_coding
description:
  Metallophosphoesterase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: metallophosphoesterase; KEGG: rpd:RPD_0905 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_4875
symbol: RPE_4875
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase, beta domain protein region; KEGG: rpc:RPC_4901 DNA polymerase, beta-like region.


ensembl_gene_id: RPE_4876
symbol: RPE_4876
gene_biotype: protein_coding
description:
  dCTP deaminase; PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: rpd:RPD_0904 2-deoxycytidine 5-triphosphate deaminase.


ensembl_gene_id: RPE_4877
symbol: metZ
gene_biotype: protein_coding
description:
  O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: RPE_4882
symbol: RPE_4882
gene_biotype: protein_coding
description:
  Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.


ensembl_gene_id: RPE_4883
symbol: argF
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.


ensembl_gene_id: RPE_4884
symbol: argD
gene_biotype: protein_coding
description:
  TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; KEGG: rpc:RPC_4916 acetylornithine and succinylornithine aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: RPE_4886
symbol: RPE_4886
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4918 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_4888
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: RPE_4889
symbol: RPE_4889
gene_biotype: protein_coding
description:
  TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_0778 phosphate transport system permease protein 2.


ensembl_gene_id: RPE_4890
symbol: RPE_4890
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, inner membrane subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: RPE_4891
symbol: RPE_4891
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, periplasmic phosphate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: RPE_4892
symbol: RPE_4892
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4924 histidine kinase.


ensembl_gene_id: RPE_4898
symbol: RPE_4898
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4931 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_4899
symbol: RPE_4899
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4932 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_4906
symbol: mtnA
gene_biotype: protein_coding
description:
  Translation initiation factor 2B subunit I family (IF-2BI); Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: RPE_4907
symbol: mtnP
gene_biotype: protein_coding
description:
  Methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.


ensembl_gene_id: RPE_4912
symbol: RPE_4912
gene_biotype: protein_coding
description:
  TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpd:RPD_4412 ATP-dependent DNA helicase RecQ.


ensembl_gene_id: RPE_4915
symbol: RPE_4915
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4938 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region.


