# geneInfo

ensembl_gene_id: RPE_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.


ensembl_gene_id: RPE_0002
symbol: RPE_0002
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: RPE_0003
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: RPE_0005
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: RPE_0008
symbol: RPE_0008
gene_biotype: protein_coding
description:
  PFAM: regulatory protein, AsnC/Lrp family; KEGG: rpc:RPC_0007 transcriptional regulator, AsnC family.


ensembl_gene_id: RPE_0011
symbol: RPE_0011
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rpc:RPC_0008 cytochrome oxidase maturation protein, cbb3-type.


ensembl_gene_id: RPE_0012
symbol: RPE_0012
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_0009 copper-translocating P-type ATPase.


ensembl_gene_id: RPE_0014
symbol: RPE_0014
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpc:RPC_0011 4Fe-4S ferredoxin, iron-sulfur binding domain.


ensembl_gene_id: RPE_0015
symbol: RPE_0015
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.


ensembl_gene_id: RPE_0016
symbol: RPE_0016
gene_biotype: protein_coding
description:
  PFAM: Cbb3-type cytochrome oxidase component; KEGG: rpc:RPC_0013 Cbb3-type cytochrome oxidase component.


ensembl_gene_id: RPE_0017
symbol: RPE_0017
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rpc:RPC_0014 cytochrome c oxidase, cbb3-type, subunit II.


ensembl_gene_id: RPE_0018
symbol: RPE_0018
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_0015 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: RPE_0019
symbol: RPE_0019
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: RPE_0020
symbol: RPE_0020
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpd:RPD_0728 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_0022
symbol: RPE_0022
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bja:bll0585 glutathione S-transferase family protein; Belongs to the GST superfamily.


ensembl_gene_id: RPE_0023
symbol: RPE_0023
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_0020 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_0024
symbol: RPE_0024
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0021 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: RPE_0026
symbol: purH
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0023 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS domain protein.


ensembl_gene_id: RPE_0028
symbol: RPE_0028
gene_biotype: protein_coding
description:
  TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; Methyltransferase type 11; KEGG: rpc:RPC_0025 Fmu (Sun); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: RPE_0033
symbol: RPE_0033
gene_biotype: protein_coding
description:
  PFAM: Alkaline phosphatase; KEGG: rpc:RPC_0030 alkaline phosphatase; Belongs to the alkaline phosphatase family.


ensembl_gene_id: RPE_0034
symbol: argG
gene_biotype: protein_coding
description:
  PFAM: argininosuccinate synthase; KEGG: rpd:RPD_0713 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.


ensembl_gene_id: RPE_0035
symbol: RPE_0035
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase, PA-phosphatase related; KEGG: rpc:RPC_0032 phosphoesterase, PA-phosphatase related.


ensembl_gene_id: RPE_0037
symbol: RPE_0037
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: rpd:RPD_0710 metal-dependent phosphohydrolase, HD subdomain.


ensembl_gene_id: RPE_0038
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: RPE_0040
symbol: RPE_0040
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_0707 alcohol dehydrogenase, zinc-binding.


ensembl_gene_id: RPE_0043
symbol: RPE_0043
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: rpc:RPC_0039 GCN5-related N-acetyltransferase.


ensembl_gene_id: RPE_0044
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: RPE_0046
symbol: RPE_0046
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4406 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_0047
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: RPE_0048
symbol: RPE_0048
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF167; KEGG: rpc:RPC_0058 protein of unknown function DUF167; Belongs to the UPF0235 family.


ensembl_gene_id: RPE_0054
symbol: RPE_0054
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_0055 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_0058
symbol: RPE_0058
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: rpd:RPD_0685 protein of unknown function DUF894, DitE.


ensembl_gene_id: RPE_0064
symbol: RPE_0064
gene_biotype: protein_coding
description:
  Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: RPE_0065
symbol: tsaD
gene_biotype: protein_coding
description:
  O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: RPE_0066
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: rpc:RPC_0045 glycerol-3-phosphate dehydrogenase (NAD(P)+).


ensembl_gene_id: RPE_0069
symbol: acsA
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: RPE_0070
symbol: RPE_0070
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_1939 hypothetical protein.


ensembl_gene_id: RPE_0071
symbol: RPE_0071
gene_biotype: protein_coding
description:
  TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_1129 phenylacetic acid degradation-related protein.


ensembl_gene_id: RPE_0073
symbol: RPE_0073
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA0995 probable acyl-CoA dehydrogenase.


ensembl_gene_id: RPE_0074
symbol: RPE_0074
gene_biotype: protein_coding
description:
  Phospholipid-binding protein, PBP family; TIGRFAM: YbhB and YbcL; PFAM: PEBP family protein; KEGG: nha:Nham_3239 YbhB and YbcL.


ensembl_gene_id: RPE_0084
symbol: RPE_0084
gene_biotype: protein_coding
description:
  PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpb:RPB_1714 transglutaminase-like.


ensembl_gene_id: RPE_0085
symbol: RPE_0085
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpa:RPA3753 DUF404.


ensembl_gene_id: RPE_0086
symbol: RPE_0086
gene_biotype: protein_coding
description:
  PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_1701 transglutaminase-like.


ensembl_gene_id: RPE_0090
symbol: RPE_0090
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0583 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with AS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_0091
symbol: RPE_0091
gene_biotype: protein_coding
description:
  Murein endopeptidase. Metallo peptidase. MEROPS family M74; PFAM: peptidase U6, penicillin-insensitive murein endopeptidase; KEGG: rpc:RPC_0581 peptidase U6, penicillin-insensitive murein endopeptidase.


ensembl_gene_id: RPE_0094
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: RPE_0096
symbol: RPE_0096
gene_biotype: protein_coding
description:
  TRAP dicarboxylate transporter; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: RPE_0097
symbol: RPE_0097
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sme:SMc04287 hypothetical protein.


ensembl_gene_id: RPE_0098
symbol: RPE_0098
gene_biotype: protein_coding
description:
  PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMc04283 putative transmembrane protein.


ensembl_gene_id: RPE_0099
symbol: RPE_0099
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; KEGG: tdn:Tmden_0189 methylase involved in ubiquinone/menaquinone biosynthesis-like.


ensembl_gene_id: RPE_0101
symbol: ku
gene_biotype: protein_coding
description:
  Ku domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: RPE_0103
symbol: RPE_0103
gene_biotype: protein_coding
description:
  PFAM: DNA repair protein RadC; KEGG: rpc:RPC_0575 DNA repair protein RadC; Belongs to the UPF0758 family.


ensembl_gene_id: RPE_0105
symbol: RPE_0105
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpc:RPC_0573 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.


ensembl_gene_id: RPE_0106
symbol: RPE_0106
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_0572 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_0108
symbol: RPE_0108
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: rpa:RPA0470 perplasmic binding protein of ABC transporter.


ensembl_gene_id: RPE_0111
symbol: RPE_0111
gene_biotype: protein_coding
description:
  PFAM: ferredoxin-dependent glutamate synthase; KEGG: rpc:RPC_0567 ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family.


ensembl_gene_id: RPE_0113
symbol: RPE_0113
gene_biotype: protein_coding
description:
  TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rpd:RPD_0264 FolC bifunctional protein; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: RPE_0114
symbol: RPE_0114
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr0103 probable oxidoreductase.


ensembl_gene_id: RPE_0115
symbol: RPE_0115
gene_biotype: protein_coding
description:
  Methyltransferase type 12; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: nmu:Nmul_A0911 tetratricopeptide TPR_4.


ensembl_gene_id: RPE_0118
symbol: RPE_0118
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KEGG: rpc:RPC_0553 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_0119
symbol: RPE_0119
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_0270 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_0121
symbol: RPE_0121
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_0552 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RPE_0125
symbol: RPE_0125
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: RPE_0129
symbol: rpmB
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L28; KEGG: rpc:RPC_0543 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: RPE_0130
symbol: RPE_0130
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0542 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_0132
symbol: RPE_0132
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0540 cobalt chelatase, pCobT subunit; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A.


ensembl_gene_id: RPE_0135
symbol: RPE_0135
gene_biotype: protein_coding
description:
  Hydrogenobyrinic acid a,c-diamide cobaltochelatase; KEGG: rpc:RPC_0538 cobalt chelatase, pCobS small subunit; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.


ensembl_gene_id: RPE_0138
symbol: RPE_0138
gene_biotype: protein_coding
description:
  Transcriptional regulator BolA; PFAM: BolA family protein; KEGG: rpc:RPC_0535 BolA-like protein; Belongs to the BolA/IbaG family.


ensembl_gene_id: RPE_0140
symbol: accA
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: RPE_0141
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: RPE_0143
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: RPE_0144
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.


ensembl_gene_id: RPE_0145
symbol: RPE_0145
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rpa:RPA0502 probable HlyC/CorC family of transporters with 2 CBS domains.


ensembl_gene_id: RPE_0146
symbol: secA1
gene_biotype: protein_coding
description:
  Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: RPE_0147
symbol: RPE_0147
gene_biotype: protein_coding
description:
  PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpc:RPC_0525 PpiC-type peptidyl-prolyl cis-trans isomerase.


ensembl_gene_id: RPE_0148
symbol: argJ
gene_biotype: protein_coding
description:
  Glutamate N-acetyltransferase / N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: RPE_0153
symbol: RPE_0153
gene_biotype: protein_coding
description:
  Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: RPE_0154
symbol: RPE_0154
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpc:RPC_0518 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: RPE_0156
symbol: RPE_0156
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_0516 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: RPE_0157
symbol: ubiG
gene_biotype: protein_coding
description:
  3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: RPE_0158
symbol: RPE_0158
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_0077 aspartokinase (aspartate kinase); TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.


ensembl_gene_id: RPE_0159
symbol: RPE_0159
gene_biotype: protein_coding
description:
  PTSINtr with GAF domain, PtsP; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: rpc:RPC_0513 PTSINtr with GAF domain, PtsP; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: RPE_0160
symbol: prfA
gene_biotype: protein_coding
description:
  Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: RPE_0161
symbol: prmC
gene_biotype: protein_coding
description:
  Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: RPE_0164
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: RPE_0166
symbol: RPE_0166
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_0506 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: RPE_0167
symbol: RPE_0167
gene_biotype: protein_coding
description:
  TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Acetoacetyl-CoA reductase; KEGG: rpc:RPC_0505 acetoacetyl-CoA reductase.


ensembl_gene_id: RPE_0168
symbol: RPE_0168
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0504 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RPE_0169
symbol: RPE_0169
gene_biotype: protein_coding
description:
  TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: rpc:RPC_0503 polyhydroxyalkanoate synthesis repressor PhaR.


ensembl_gene_id: RPE_0171
symbol: RPE_0171
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpc:RPC_0502 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).


ensembl_gene_id: RPE_0174
symbol: rpmF
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bja:bsr0948 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: RPE_0175
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: RPE_0176
symbol: RPE_0176
gene_biotype: protein_coding
description:
  Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; KEGG: rpc:RPC_0497 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: RPE_0180
symbol: RPE_0180
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpc:RPC_0493 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).


ensembl_gene_id: RPE_0181
symbol: RPE_0181
gene_biotype: protein_coding
description:
  Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: RPE_0183
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: RPE_0186
symbol: RPE_0186
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_0490 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: RPE_0187
symbol: RPE_0187
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0489 ferric uptake regulator, FUR family; Belongs to the Fur family.


ensembl_gene_id: RPE_0189
symbol: RPE_0189
gene_biotype: protein_coding
description:
  PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: rpc:RPC_0487 secretion protein HlyD.


ensembl_gene_id: RPE_0190
symbol: RPE_0190
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_0486 drug resistance transporter EmrB/QacA subfamily.


ensembl_gene_id: RPE_0191
symbol: RPE_0191
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: RPE_0192
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: RPE_0193
symbol: rpsO
gene_biotype: protein_coding
description:
  SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.


ensembl_gene_id: RPE_0194
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: RPE_0195
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: RPE_0196
symbol: infB
gene_biotype: protein_coding
description:
  Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: RPE_0199
symbol: rimP
gene_biotype: protein_coding
description:
  Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: RPE_0200
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: RPE_0201
symbol: RPE_0201
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_0473 transcriptional regulator, XRE family.


ensembl_gene_id: RPE_0202
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: RPE_0203
symbol: RPE_0203
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; transporter-associated region; KEGG: bja:bll0792 magnesium and cobalt efflux protein.


ensembl_gene_id: RPE_0204
symbol: ybeY
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: RPE_0206
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: RPE_0207
symbol: RPE_0207
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_0467 HAD-superfamily hydrolase subfamily IA, variant 3.


ensembl_gene_id: RPE_0208
symbol: fur
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0466 ferric uptake regulator, FUR family; Belongs to the Fur family.


ensembl_gene_id: RPE_0209
symbol: RPE_0209
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_0465 ribosomal-protein-alanine acetyltransferase.


ensembl_gene_id: RPE_0216
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: RPE_0217
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: RPE_0222
symbol: RPE_0222
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_0255 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RPE_0223
symbol: mntP
gene_biotype: protein_coding
description:
  Protein of unknown function DUF204; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.


ensembl_gene_id: RPE_0224
symbol: RPE_0224
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0453 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.


ensembl_gene_id: RPE_0226
symbol: RPE_0226
gene_biotype: protein_coding
description:
  TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rpc:RPC_0356 polyhydroxyalkanoate depolymerase, intracellular.


ensembl_gene_id: RPE_0229
symbol: RPE_0229
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_0359 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_0230
symbol: RPE_0230
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpa:RPA0571 two-component transcriptional regulator RegR, fis family.


ensembl_gene_id: RPE_0235
symbol: RPE_0235
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_0712 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_0237
symbol: RPE_0237
gene_biotype: protein_coding
description:
  TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rpd:RPD_0139 chromate transporter.


ensembl_gene_id: RPE_0241
symbol: RPE_0241
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: rpa:RPA0561 hypothetical protein.


ensembl_gene_id: RPE_0243
symbol: RPE_0243
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rpc:RPC_0364 UBA/ThiF-type NAD/FAD binding fold.


ensembl_gene_id: RPE_0244
symbol: RPE_0244
gene_biotype: protein_coding
description:
  Glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpa:RPA0422 2-hydroxyacid dehydrogenase.


ensembl_gene_id: RPE_0246
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: RPE_0248
symbol: RPE_0248
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_0525 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RPE_0251
symbol: RPE_0251
gene_biotype: protein_coding
description:
  PFAM: Carboxylesterase, type B; KEGG: xac:XAC1213 carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family.


ensembl_gene_id: RPE_0252
symbol: RPE_0252
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_0362 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_0253
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: RPE_0254
symbol: RPE_0254
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; KEGG: nha:Nham_0039 glutathione S-transferase-like.


ensembl_gene_id: RPE_0255
symbol: RPE_0255
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_0611 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_0256
symbol: RPE_0256
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase I; PFAM: beta-ketoacyl synthase; KEGG: rpd:RPD_0221 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: RPE_0257
symbol: fabA
gene_biotype: protein_coding
description:
  3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.


ensembl_gene_id: RPE_0258
symbol: fur-2
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0350 ferric uptake regulator, FUR family; Belongs to the Fur family.


ensembl_gene_id: RPE_0260
symbol: glnD
gene_biotype: protein_coding
description:
  UTP-GlnB uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen fixation and metabolism.


ensembl_gene_id: RPE_0261
symbol: RPE_0261
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_0035 multi-sensor hybrid histidine kinase.


ensembl_gene_id: RPE_0266
symbol: proA
gene_biotype: protein_coding
description:
  Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: RPE_0267
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: RPE_0268
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: RPE_0269
symbol: rlmH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: RPE_0271
symbol: RPE_0271
gene_biotype: protein_coding
description:
  C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A; KEGG: rpd:RPD_0566 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.


ensembl_gene_id: RPE_0272
symbol: RPE_0272
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF610, YibQ; KEGG: rpc:RPC_0167 protein of unknown function DUF610, YibQ.


ensembl_gene_id: RPE_0273
symbol: rppH
gene_biotype: protein_coding
description:
  NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: RPE_0275
symbol: RPE_0275
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: rpd:RPD_0562 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: RPE_0277
symbol: RPE_0277
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: rpc:RPC_0171 porphobilinogen synthase; Belongs to the ALAD family.


ensembl_gene_id: RPE_0278
symbol: RPE_0278
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rpc:RPC_0172 transcriptional regulator, AraC family.


ensembl_gene_id: RPE_0279
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: RPE_0280
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: RPE_0281
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: RPE_0282
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: RPE_0283
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: RPE_0285
symbol: rlpA
gene_biotype: protein_coding
description:
  Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: RPE_0286
symbol: priA
gene_biotype: protein_coding
description:
  Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: RPE_0287
symbol: xerC
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: RPE_0290
symbol: RPE_0290
gene_biotype: protein_coding
description:
  TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: rpc:RPC_0183 dihydrolipoamide dehydrogenase.


ensembl_gene_id: RPE_0292
symbol: RPE_0292
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpb:RPB_0275 short-chain dehydrogenase/reductase.


ensembl_gene_id: RPE_0296
symbol: RPE_0296
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: RPE_0297
symbol: RPE_0297
gene_biotype: protein_coding
description:
  TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; Transketolase, central region; KEGG: rpc:RPC_0191 2-oxoglutarate dehydrogenase, E1 component.


ensembl_gene_id: RPE_0298
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: RPE_0299
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: RPE_0300
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.


ensembl_gene_id: RPE_0302
symbol: RPE_0302
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: RPE_0306
symbol: RPE_0306
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0005; KEGG: rpc:RPC_0200 protein of unknown function UPF0005; Belongs to the BI1 family.


ensembl_gene_id: RPE_0311
symbol: ccmA
gene_biotype: protein_coding
description:
  Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.


ensembl_gene_id: RPE_0312
symbol: RPE_0312
gene_biotype: protein_coding
description:
  Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.


ensembl_gene_id: RPE_0313
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: RPE_0314
symbol: RPE_0314
gene_biotype: protein_coding
description:
  Heme exporter protein D (CcmD); Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.


ensembl_gene_id: RPE_0315
symbol: RPE_0315
gene_biotype: protein_coding
description:
  TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: rpc:RPC_0209 periplasmic protein thiol.


ensembl_gene_id: RPE_0317
symbol: RPE_0317
gene_biotype: protein_coding
description:
  Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: RPE_0318
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: RPE_0320
symbol: RPE_0320
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0214 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: RPE_0321
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: RPE_0322
symbol: RPE_0322
gene_biotype: protein_coding
description:
  PFAM: transcription activator, effector binding; KEGG: rpc:RPC_0216 transcription activator, effector binding.


ensembl_gene_id: RPE_0324
symbol: RPE_0324
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_0218 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_0325
symbol: RPE_0325
gene_biotype: protein_coding
description:
  Antenna complex, alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.


ensembl_gene_id: RPE_0327
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the i [...]


ensembl_gene_id: RPE_0328
symbol: rpsP
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S16; KEGG: rpc:RPC_0222 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: RPE_0329
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: RPE_0330
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: RPE_0331
symbol: rplS
gene_biotype: protein_coding
description:
  LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: RPE_0332
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: RPE_0333
symbol: cysC
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: RPE_0334
symbol: cysD
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0063 sulfate adenylyltransferase, small subunit; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase.


ensembl_gene_id: RPE_0339
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: RPE_0340
symbol: RPE_0340
gene_biotype: protein_coding
description:
  Citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; KEGG: rpc:RPC_0233 citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: RPE_0341
symbol: RPE_0341
gene_biotype: protein_coding
description:
  Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: RPE_0342
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: RPE_0343
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.


ensembl_gene_id: RPE_0345
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: RPE_0348
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: RPE_0351
symbol: grpE
gene_biotype: protein_coding
description:
  GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: RPE_0352
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: RPE_0353
symbol: rph
gene_biotype: protein_coding
description:
  RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: RPE_0354
symbol: RPE_0354
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: RPE_0355
symbol: RPE_0355
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: RPE_0356
symbol: RPE_0356
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_0322 extracellular ligand-binding receptor.


ensembl_gene_id: RPE_0357
symbol: rsmI
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: RPE_0358
symbol: RPE_0358
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0102; KEGG: rpc:RPC_0320 protein of unknown function UPF0102; Belongs to the UPF0102 family.


ensembl_gene_id: RPE_0359
symbol: gshB
gene_biotype: protein_coding
description:
  KEGG: rpa:RPA0322 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: RPE_0360
symbol: RPE_0360
gene_biotype: protein_coding
description:
  Mg chelatase, subunit ChlI; KEGG: rpc:RPC_0317 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.


ensembl_gene_id: RPE_0362
symbol: RPE_0362
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0315 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_0364
symbol: coaA
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0312 pantothenate kinase; TIGRFAM: pantothenate kinase; PFAM: phosphoribulokinase/uridine kinase.


ensembl_gene_id: RPE_0365
symbol: hisE
gene_biotype: protein_coding
description:
  PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: rpc:RPC_0311 phosphoribosyl-ATP pyrophosphohydrolase.


ensembl_gene_id: RPE_0366
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: RPE_0367
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; KEGG: rpc:RPC_0307 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.


ensembl_gene_id: RPE_0368
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: RPE_0370
symbol: hisB
gene_biotype: protein_coding
description:
  PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: nha:Nham_0122 imidazoleglycerol-phosphate dehydratase.


ensembl_gene_id: RPE_0371
symbol: hslV
gene_biotype: protein_coding
description:
  HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: RPE_0372
symbol: hslU
gene_biotype: protein_coding
description:
  Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: RPE_0375
symbol: RPE_0375
gene_biotype: protein_coding
description:
  PFAM: import inner membrane translocase, subunit Tim44; KEGG: rpc:RPC_0299 import inner membrane translocase, subunit Tim44.


ensembl_gene_id: RPE_0376
symbol: secB
gene_biotype: protein_coding
description:
  Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: RPE_0377
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: RPE_0378
symbol: coaE
gene_biotype: protein_coding
description:
  Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: RPE_0379
symbol: RPE_0379
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: RPE_0380
symbol: RPE_0380
gene_biotype: protein_coding
description:
  Protein of unknown function DUF299; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: RPE_0382
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: RPE_0383
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: RPE_0384
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: RPE_0385
symbol: rsmG
gene_biotype: protein_coding
description:
  Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: RPE_0386
symbol: RPE_0386
gene_biotype: protein_coding
description:
  Chromosome segregation ATPase; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rpc:RPC_0288 cobyrinic acid a,c-diamide synthase.


ensembl_gene_id: RPE_0387
symbol: RPE_0387
gene_biotype: protein_coding
description:
  Chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rpc:RPC_0287 ParB-like partition proteins; Belongs to the ParB family.


ensembl_gene_id: RPE_0388
symbol: RPE_0388
gene_biotype: protein_coding
description:
  TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: rpc:RPC_0286 DNA polymerase III, delta subunit.


ensembl_gene_id: RPE_0390
symbol: leuS
gene_biotype: protein_coding
description:
  TIGRFAM: leucyl-tRNA synthetase; KEGG: rpb:RPB_0385 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: RPE_0391
symbol: RPE_0391
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0283 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_0392
symbol: RPE_0392
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0001; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: RPE_0394
symbol: RPE_0394
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_0280 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_0395
symbol: RPE_0395
gene_biotype: protein_coding
description:
  PFAM: cyclic nucleotide-binding; KEGG: rpc:RPC_0279 cyclic nucleotide-binding domain (cNMP-BD) protein.


ensembl_gene_id: RPE_0396
symbol: RPE_0396
gene_biotype: protein_coding
description:
  TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpc:RPC_0278 exodeoxyribonuclease III (xth).


ensembl_gene_id: RPE_0397
symbol: RPE_0397
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: RPE_0401
symbol: RPE_0401
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase, beta domain protein region; KEGG: rpc:RPC_0273 DNA polymerase, beta-like region.


ensembl_gene_id: RPE_0402
symbol: RPE_0402
gene_biotype: protein_coding
description:
  TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rpa:RPA0275 putative ammonium transporter AmtB.


ensembl_gene_id: RPE_0403
symbol: RPE_0403
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: rpd:RPD_0449 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: RPE_0404
symbol: RPE_0404
gene_biotype: protein_coding
description:
  TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rpc:RPC_0270 ammonium transporter.


ensembl_gene_id: RPE_0405
symbol: RPE_0405
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: rpd:RPD_0451 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: RPE_0406
symbol: RPE_0406
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0268 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase.


ensembl_gene_id: RPE_0407
symbol: RPE_0407
gene_biotype: protein_coding
description:
  TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rpc:RPC_0267 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family.


ensembl_gene_id: RPE_0408
symbol: RPE_0408
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF343; KEGG: rpc:RPC_0266 protein of unknown function DUF343; Belongs to the UPF0434 family.


ensembl_gene_id: RPE_0411
symbol: RPE_0411
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0263 histidine kinase, HAMP region.


ensembl_gene_id: RPE_0415
symbol: RPE_0415
gene_biotype: protein_coding
description:
  PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: rpc:RPC_0259 RNA binding S1.


ensembl_gene_id: RPE_0416
symbol: RPE_0416
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpb:RPB_1973 epoxide hydrolase.


ensembl_gene_id: RPE_0422
symbol: RPE_0422
gene_biotype: protein_coding
description:
  Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: rpc:RPC_0252 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.


ensembl_gene_id: RPE_0430
symbol: RPE_0430
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: RPE_0431
symbol: hpf
gene_biotype: protein_coding
description:
  Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: RPE_0432
symbol: RPE_0432
gene_biotype: protein_coding
description:
  TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: rpc:RPC_0413 PTS IIA-like nitrogen-regulatory protein PtsN.


ensembl_gene_id: RPE_0435
symbol: RPE_0435
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: rpc:RPC_0409 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: RPE_0436
symbol: ugpC
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.


ensembl_gene_id: RPE_0437
symbol: ugpE
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: RPE_0438
symbol: RPE_0438
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_0406 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_0440
symbol: RPE_0440
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein, family 1; KEGG: rpc:RPC_0404 extracellular solute-binding protein, family 1.


ensembl_gene_id: RPE_0441
symbol: RPE_0441
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpc:RPC_0403 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: RPE_0442
symbol: RPE_0442
gene_biotype: protein_coding
description:
  PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_0402 excinuclease ABC, C subunit-like.


ensembl_gene_id: RPE_0444
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: RPE_0449
symbol: RPE_0449
gene_biotype: protein_coding
description:
  SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: RPE_0450
symbol: RPE_0450
gene_biotype: protein_coding
description:
  Signal peptide peptidase A. Serine peptidase. MEROPS family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: rpc:RPC_0396 signal peptide peptidase SppA, 36K type.


ensembl_gene_id: RPE_0451
symbol: ihfB
gene_biotype: protein_coding
description:
  Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: RPE_0453
symbol: trpF
gene_biotype: protein_coding
description:
  PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rpc:RPC_0393 phosphoribosylanthranilate isomerase; Belongs to the TrpF family.


ensembl_gene_id: RPE_0454
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: RPE_0455
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: RPE_0456
symbol: accD
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: RPE_0457
symbol: RPE_0457
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0389 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: RPE_0458
symbol: RPE_0458
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP1368 hypothetical protein.


ensembl_gene_id: RPE_0459
symbol: RPE_0459
gene_biotype: protein_coding
description:
  TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rpa:RPA0073 thioredoxin; Belongs to the thioredoxin family.


ensembl_gene_id: RPE_0460
symbol: RPE_0460
gene_biotype: protein_coding
description:
  DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: rpc:RPC_0387 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: RPE_0464
symbol: RPE_0464
gene_biotype: protein_coding
description:
  PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; KEGG: rpc:RPC_0383 protein of unknown function UPF0079.


ensembl_gene_id: RPE_0465
symbol: RPE_0465
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: rpc:RPC_0382 PAS/PAC sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_0466
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: RPE_0467
symbol: RPE_0467
gene_biotype: protein_coding
description:
  Phosphopantothenate-cysteine ligase / Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: RPE_0469
symbol: RPE_0469
gene_biotype: protein_coding
description:
  TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: rpc:RPC_0379 2-polyprenylphenol 6-hydroxylase.


ensembl_gene_id: RPE_0470
symbol: ubiE
gene_biotype: protein_coding
description:
  Demethylmenaquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: RPE_0471
symbol: mutM
gene_biotype: protein_coding
description:
  DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: RPE_0474
symbol: RPE_0474
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_0246 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_0475
symbol: aroK-2
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family with shikimate kinase activity; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: RPE_0478
symbol: RPE_0478
gene_biotype: protein_coding
description:
  Oxidoreductase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding; KEGG: rpb:RPB_0333 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_0479
symbol: RPE_0479
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: rpc:RPC_0241 major facilitator superfamily MFS_1.


ensembl_gene_id: RPE_0480
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: RPE_0484
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: RPE_0486
symbol: RPE_0486
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0337 transcriptional regulator, AraC family; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; SMART: helix-turn-helix- domain containing protein, AraC type.


ensembl_gene_id: RPE_0488
symbol: nth
gene_biotype: protein_coding
description:
  DNA-(apurinic or apyrimidinic site) lyase / endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: RPE_0491
symbol: RPE_0491
gene_biotype: protein_coding
description:
  Amine oxidase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_0443 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_0493
symbol: pheT
gene_biotype: protein_coding
description:
  TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: rpc:RPC_0444 phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: RPE_0496
symbol: pheS
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_0045 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc; aminoacyl tRNA synthetase, class II domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: RPE_0497
symbol: rplT
gene_biotype: protein_coding
description:
  LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: RPE_0498
symbol: rpmI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L35; KEGG: nha:Nham_0076 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: RPE_0500
symbol: infC
gene_biotype: protein_coding
description:
  Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: RPE_0502
symbol: queG
gene_biotype: protein_coding
description:
  Domain of unknown function DUF1730; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: RPE_0503
symbol: RPE_0503
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, C-terminal domain; KEGG: rpc:RPC_0439 glutathione S-transferase-like.


ensembl_gene_id: RPE_0504
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: RPE_0505
symbol: RPE_0505
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: rpc:RPC_0437 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: RPE_0508
symbol: RPE_0508
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_0061 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_0509
symbol: RPE_0509
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpc:RPC_0073 cation diffusion facilitator family transporter.


ensembl_gene_id: RPE_0510
symbol: RPE_0510
gene_biotype: protein_coding
description:
  PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rpb:RPB_0327 succinate dehydrogenase, cytochrome b subunit.


ensembl_gene_id: RPE_0511
symbol: RPE_0511
gene_biotype: protein_coding
description:
  PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rpb:RPB_0326 succinate dehydrogenase, cytochrome b subunit.


ensembl_gene_id: RPE_0512
symbol: RPE_0512
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0070 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: RPE_0514
symbol: RPE_0514
gene_biotype: protein_coding
description:
  KEGG: rpa:RPA0216 succinate dehydrogenase iron-sulfur protein subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: RPE_0515
symbol: RPE_0515
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpd:RPD_0477 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.


ensembl_gene_id: RPE_0518
symbol: RPE_0518
gene_biotype: protein_coding
description:
  PFAM: membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); KEGG: rpc:RPC_0077 membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG).


ensembl_gene_id: RPE_0526
symbol: RPE_0526
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpd:RPD_4390 TonB-dependent receptor.


ensembl_gene_id: RPE_0527
symbol: RPE_0527
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: rpc:RPC_0085 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: RPE_0533
symbol: RPE_0533
gene_biotype: protein_coding
description:
  PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rpc:RPC_4622 transposase IS116/IS110/IS902.


ensembl_gene_id: RPE_0534
symbol: RPE_0534
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_4383 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_0535
symbol: RPE_0535
gene_biotype: protein_coding
description:
  SMART: extracellular solute-binding protein, family 3; KEGG: rpa:RPA4797 ABC transporter, amino acid binding protein; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: RPE_0538
symbol: RPE_0538
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: rpc:RPC_0091 cytochrome d ubiquinol oxidase, subunit II.


ensembl_gene_id: RPE_0539
symbol: RPE_0539
gene_biotype: protein_coding
description:
  PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: rpc:RPC_0092 cytochrome bd ubiquinol oxidase, subunit I.


ensembl_gene_id: RPE_0540
symbol: RPE_0540
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpc:RPC_0093 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_0541
symbol: RPE_0541
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpa:RPA4791 two-component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_0542
symbol: RPE_0542
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_0095 response regulator receiver sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_0543
symbol: RPE_0543
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0096 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_0544
symbol: RPE_0544
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein, family 1; KEGG: rpc:RPC_0097 extracellular solute-binding protein, family 1.


ensembl_gene_id: RPE_0546
symbol: RPE_0546
gene_biotype: protein_coding
description:
  Extracellular ligand-binding receptor; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_4371 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_0547
symbol: RPE_0547
gene_biotype: protein_coding
description:
  PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: rpc:RPC_0346 pirin-like; Belongs to the pirin family.


ensembl_gene_id: RPE_0548
symbol: purC
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_0702 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.


ensembl_gene_id: RPE_0549
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: RPE_0550
symbol: obg
gene_biotype: protein_coding
description:
  Small GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: RPE_0551
symbol: RPE_0551
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpd:RPD_0585 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: RPE_0555
symbol: rpmA
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L27; KEGG: rpb:RPB_0247 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: RPE_0556
symbol: rplU
gene_biotype: protein_coding
description:
  LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: RPE_0558
symbol: RPE_0558
gene_biotype: protein_coding
description:
  PFAM: phage integrase family protein; KEGG: ret:RHE_CH00241 putative recombinase protein, phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: RPE_0560
symbol: RPE_0560
gene_biotype: protein_coding
description:
  PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: xcb:XC_0536 helicase.


ensembl_gene_id: RPE_0572
symbol: RPE_0572
gene_biotype: protein_coding
description:
  TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: sth:STH2337 ribose 5-phosphate isomerase.


ensembl_gene_id: RPE_0579
symbol: nadE
gene_biotype: protein_coding
description:
  NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: RPE_0580
symbol: RPE_0580
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: sme:SMb20650 putative long-chain fatty-acid-CoA ligase protein.


ensembl_gene_id: RPE_0582
symbol: RPE_0582
gene_biotype: protein_coding
description:
  TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: sme:SMb20652 putative asparagine synthetase protein.


ensembl_gene_id: RPE_0585
symbol: RPE_0585
gene_biotype: protein_coding
description:
  2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_0880 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RPE_0586
symbol: RPE_0586
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold; KEGG: rpa:RPA0675 possible hydrolase (alpha/beta hydrolase superfamily).


ensembl_gene_id: RPE_0587
symbol: RPE_0587
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA0674 possible alcohol dehydrogenase class III family.


ensembl_gene_id: RPE_0588
symbol: RPE_0588
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: rpd:RPD_1522 cyclic nucleotide-binding.


ensembl_gene_id: RPE_0589
symbol: RPE_0589
gene_biotype: protein_coding
description:
  4-hydroxybenzoyl-CoA reductase beta subunit; PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpd:RPD_1523 molybdopterin dehydrogenase, FAD-binding.


ensembl_gene_id: RPE_0590
symbol: RPE_0590
gene_biotype: protein_coding
description:
  4-hydroxybenzoyl-CoA reductase alpha subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_1014 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.


ensembl_gene_id: RPE_0591
symbol: RPE_0591
gene_biotype: protein_coding
description:
  4-hydroxybenzoyl-CoA reductase gamma subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpd:RPD_1525 (2Fe-2S)-binding.


ensembl_gene_id: RPE_0592
symbol: RPE_0592
gene_biotype: protein_coding
description:
  TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1016 benzoate-CoA ligase family.


ensembl_gene_id: RPE_0593
symbol: RPE_0593
gene_biotype: protein_coding
description:
  Extracellular ligand-binding receptor; TIGRFAM:Twin-arginine translocation pathway signal; PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1017 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_0594
symbol: RPE_0594
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpa:RPA0667 putative membrane spanning subunit of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_0595
symbol: RPE_0595
gene_biotype: protein_coding
description:
  ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1019 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_0599
symbol: RPE_0599
gene_biotype: protein_coding
description:
  TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein; KEGG: rpc:RPC_1023 transcriptional regulator, BadM/Rrf2 family.


ensembl_gene_id: RPE_0601
symbol: RPE_0601
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rpd:RPD_1531 pyruvate/2-ketoisovalerate 2-oxoacid:acceptor oxidoreductase, beta subunit.


ensembl_gene_id: RPE_0602
symbol: RPE_0602
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: rpd:RPD_1532 pyruvate flavodoxin/ferredoxin oxidoreductase-like.


ensembl_gene_id: RPE_0604
symbol: RPE_0604
gene_biotype: protein_coding
description:
  TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1025 benzoate-CoA ligase family.


ensembl_gene_id: RPE_0605
symbol: RPE_0605
gene_biotype: protein_coding
description:
  TIGRFAM: putative CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit D; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: rpc:RPC_1026 benzoyl-CoA reductase, subunit D.


ensembl_gene_id: RPE_0606
symbol: RPE_0606
gene_biotype: protein_coding
description:
  TIGRFAM: putative CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit A; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: rpc:RPC_1027 benzoyl-CoA reductase, subunit A.


ensembl_gene_id: RPE_0607
symbol: RPE_0607
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA reductase, subunit B; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: rpd:RPD_1537 benzoyl-CoA reductase, subunit B.


ensembl_gene_id: RPE_0608
symbol: RPE_0608
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA reductase, subunit C; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: rpc:RPC_1029 benzoyl-CoA reductase, subunit C.


ensembl_gene_id: RPE_0609
symbol: RPE_0609
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_1030 alcohol dehydrogenase, zinc-binding.


ensembl_gene_id: RPE_0611
symbol: RPE_0611
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpc:RPC_1032 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_0612
symbol: menB
gene_biotype: protein_coding
description:
  2-ketocyclohexane 1-carbonyl-CoA hydrolase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.


ensembl_gene_id: RPE_0613
symbol: RPE_0613
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpc:RPC_1034 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_0615
symbol: RPE_0615
gene_biotype: protein_coding
description:
  Cyclohex-1-ene 1-carbonyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_1036 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RPE_0620
symbol: RPE_0620
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: rpa:RPA1457 regulatory protein NorQ, probable ATPase.


ensembl_gene_id: RPE_0621
symbol: RPE_0621
gene_biotype: protein_coding
description:
  PFAM: cytochrome c oxidase, subunit I; KEGG: rpa:RPA1456 nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: RPE_0630
symbol: RPE_0630
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rpa:RPA3014 two-component transcriptional regulator, LuxR family.


ensembl_gene_id: RPE_0631
symbol: RPE_0631
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein; KEGG: rpb:RPB_4450 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_0632
symbol: RPE_0632
gene_biotype: protein_coding
description:
  Phytochrome sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein; KEGG: rpb:RPB_4451 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_0634
symbol: RPE_0634
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rpd:RPD_2405 ATP-binding region, ATPase-like.


ensembl_gene_id: RPE_0635
symbol: RPE_0635
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.


ensembl_gene_id: RPE_0636
symbol: guaC
gene_biotype: protein_coding
description:
  IMP dehydrogenase/GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.


ensembl_gene_id: RPE_0637
symbol: RPE_0637
gene_biotype: protein_coding
description:
  Methyltransferase small; PFAM: putative RNA methylase; methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mth:MTH1329 methyltransferase related protein.


ensembl_gene_id: RPE_0638
symbol: RPE_0638
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpa:RPA0679 hypothetical protein.


ensembl_gene_id: RPE_0641
symbol: RPE_0641
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_0686 signal transduction histidine kinase, nitrogen specific, NtrB.


ensembl_gene_id: RPE_0642
symbol: rpmH
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L34; KEGG: rpc:RPC_0819 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: RPE_0643
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: RPE_0644
symbol: yidC
gene_biotype: protein_coding
description:
  Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: RPE_0645
symbol: engB
gene_biotype: protein_coding
description:
  GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: RPE_0647
symbol: argB
gene_biotype: protein_coding
description:
  N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: RPE_0649
symbol: RPE_0649
gene_biotype: protein_coding
description:
  Pyrimidine 5'-nucleotidase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpa:RPA0627 putative haloacid dehalogenase superfamily hydrolase.


ensembl_gene_id: RPE_0651
symbol: dapD
gene_biotype: protein_coding
description:
  TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: rpd:RPD_0075 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: RPE_0653
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: RPE_0654
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: RPE_0655
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: RPE_0656
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: RPE_0658
symbol: RPE_0658
gene_biotype: protein_coding
description:
  PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpd:RPD_4335 cyclopropane-fatty-acyl-phospholipid synthase.


ensembl_gene_id: RPE_0664
symbol: RPE_0664
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0797 ABC transporter, ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: RPE_0665
symbol: rpmE
gene_biotype: protein_coding
description:
  LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.


ensembl_gene_id: RPE_0668
symbol: RPE_0668
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA0915 putative NADPH quinone oxidoreductase.


ensembl_gene_id: RPE_0669
symbol: RPE_0669
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0789 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_0670
symbol: RPE_0670
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: bja:bll1156 transcriptional regulatory protein.


ensembl_gene_id: RPE_0673
symbol: RPE_0673
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_4605 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RPE_0674
symbol: RPE_0674
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase.


ensembl_gene_id: RPE_0675
symbol: RPE_0675
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rpa:RPA0820 putative glutathionine S-transferase.


ensembl_gene_id: RPE_0677
symbol: RPE_0677
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.


ensembl_gene_id: RPE_0682
symbol: RPE_0682
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_0760 glutamate synthases, NADH/NADPH, small subunit.


ensembl_gene_id: RPE_0683
symbol: RPE_0683
gene_biotype: protein_coding
description:
  PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rpc:RPC_0761 glutamate synthase (ferredoxin).


ensembl_gene_id: RPE_0685
symbol: RPE_0685
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: rpb:RPB_4533 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: RPE_0687
symbol: RPE_0687
gene_biotype: protein_coding
description:
  UDP-glucose pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bja:blr1499 UTP--glucose-1-phosphate uridylyltransferase.


ensembl_gene_id: RPE_0688
symbol: RPE_0688
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_0766 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_0696
symbol: RPE_0696
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0769 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: RPE_0699
symbol: RPE_0699
gene_biotype: protein_coding
description:
  PFAM: filamentation induced by cAMP protein Fic; KEGG: rpb:RPB_1983 filamentation induced by cAMP protein Fic.


ensembl_gene_id: RPE_0701
symbol: RPE_0701
gene_biotype: protein_coding
description:
  TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_0775 lytic murein transglycosylase.


ensembl_gene_id: RPE_0704
symbol: RPE_0704
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpd:RPD_4360 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: RPE_0705
symbol: RPE_0705
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: rpd:RPD_4359 regulatory protein, TetR.


ensembl_gene_id: RPE_0706
symbol: RPE_0706
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: rpd:RPD_4358 histidinol-phosphate phosphatase, putative, inositol monophosphatase.


ensembl_gene_id: RPE_0708
symbol: RPE_0708
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_0781 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_0710
symbol: RPE_0710
gene_biotype: protein_coding
description:
  TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: rpd:RPD_4352 flavoprotein WrbA.


ensembl_gene_id: RPE_0711
symbol: RPE_0711
gene_biotype: protein_coding
description:
  PFAM: Pirin domain protein domain protein; KEGG: rpd:RPD_4351 pirin-like; Belongs to the pirin family.


ensembl_gene_id: RPE_0712
symbol: RPE_0712
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpa:RPA0911 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_0714
symbol: RPE_0714
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF179; KEGG: rpc:RPC_0788 protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: RPE_0719
symbol: RPE_0719
gene_biotype: protein_coding
description:
  Putative phage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: rpc:RPC_0757 putative phage repressor; Belongs to the peptidase S24 family.


ensembl_gene_id: RPE_0721
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: RPE_0723
symbol: RPE_0723
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rpd:RPD_0791 MATE efflux family protein.


ensembl_gene_id: RPE_0725
symbol: RPE_0725
gene_biotype: protein_coding
description:
  PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rpd:RPD_0793 ATP dependent DNA ligase.


ensembl_gene_id: RPE_0727
symbol: RPE_0727
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_0749 tetratricopeptide TPR_2.


ensembl_gene_id: RPE_0729
symbol: RPE_0729
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_0796 extracellular ligand-binding receptor.


ensembl_gene_id: RPE_0730
symbol: RPE_0730
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; KEGG: rpc:RPC_0747 DEAD/DEAH box helicase-like.


ensembl_gene_id: RPE_0732
symbol: RPE_0732
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpa:RPA0809 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_0733
symbol: RPE_0733
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_0744 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: RPE_0736
symbol: lysS
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0730 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: RPE_0737
symbol: RPE_0737
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_0729 extracellular solute-binding protein, family 3.


ensembl_gene_id: RPE_0739
symbol: RPE_0739
gene_biotype: protein_coding
description:
  PFAM: electron transport protein SCO1/SenC; KEGG: rpc:RPC_0721 electron transport protein SCO1/SenC.


ensembl_gene_id: RPE_0742
symbol: RPE_0742
gene_biotype: protein_coding
description:
  PFAM: chalcone and stilbene synthases domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: rpc:RPC_2800 3-oxoacyl-(acyl-carrier protein) synthase.


ensembl_gene_id: RPE_0744
symbol: RPE_0744
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpb:RPB_0879 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_0745
symbol: RPE_0745
gene_biotype: protein_coding
description:
  Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.


ensembl_gene_id: RPE_0747
symbol: RPE_0747
gene_biotype: protein_coding
description:
  PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase.


ensembl_gene_id: RPE_0750
symbol: RPE_0750
gene_biotype: protein_coding
description:
  Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rpd:RPD_0983 protocatechuate 4,5-dioxygenase.


ensembl_gene_id: RPE_0751
symbol: RPE_0751
gene_biotype: protein_coding
description:
  Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rpa:RPA4702 protocatechuate 4,5-dioxygenase, beta chain.


ensembl_gene_id: RPE_0752
symbol: RPE_0752
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.


ensembl_gene_id: RPE_0754
symbol: hisE-2
gene_biotype: protein_coding
description:
  PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: rpc:RPC_0716 phosphoribosyl-ATP pyrophosphohydrolase.


ensembl_gene_id: RPE_0762
symbol: modC
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, ATPase subunit; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.


ensembl_gene_id: RPE_0763
symbol: RPE_0763
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: RPE_0764
symbol: RPE_0764
gene_biotype: protein_coding
description:
  TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rpa:RPA4717 molybdate transport system substrate-binding protein.


ensembl_gene_id: RPE_0765
symbol: RPE_0765
gene_biotype: protein_coding
description:
  Transcriptional regulator, ModE family; TIGRFAM: molybdate transport repressor, ModE; Molybdenum-pterin binding; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: rpc:RPC_0705 transcriptional regulator, ModE family.


ensembl_gene_id: RPE_0766
symbol: RPE_0766
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0704 pyruvate flavodoxin/ferredoxin oxidoreductase-like.


ensembl_gene_id: RPE_0767
symbol: RPE_0767
gene_biotype: protein_coding
description:
  Glutamate synthase (NADPH) small chain; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rpa:RPA4722 possible glutamate synthase, small subunit.


ensembl_gene_id: RPE_0769
symbol: RPE_0769
gene_biotype: protein_coding
description:
  6-phosphofructokinase; PFAM: PfkB domain protein; KEGG: rpc:RPC_0700 PfkB; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: RPE_0770
symbol: trpB-2
gene_biotype: protein_coding
description:
  Pyridoxal-phosphate dependent TrpB-like enzyme; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: RPE_0773
symbol: RPE_0773
gene_biotype: protein_coding
description:
  Putative flagellar hook-associated protein 3 FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: RPE_0774
symbol: flgK
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_0874 flagellar hook-associated protein.


ensembl_gene_id: RPE_0777
symbol: RPE_0777
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: rpc:RPC_0871 flagellar basal body FlaE.


ensembl_gene_id: RPE_0778
symbol: RPE_0778
gene_biotype: protein_coding
description:
  Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: RPE_0781
symbol: RPE_0781
gene_biotype: protein_coding
description:
  Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: RPE_0782
symbol: RPE_0782
gene_biotype: protein_coding
description:
  Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: RPE_0783
symbol: RPE_0783
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpc:RPC_0865 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_0786
symbol: RPE_0786
gene_biotype: protein_coding
description:
  PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB.


ensembl_gene_id: RPE_0790
symbol: RPE_0790
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: DSBA oxidoreductase; KEGG: rpc:RPC_0622 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_0795
symbol: RPE_0795
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpd:RPD_0340 sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_0801
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: RPE_0803
symbol: RPE_0803
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; KEGG: rpc:RPC_0610 putative signal-transduction protein with CBS domains.


ensembl_gene_id: RPE_0812
symbol: RPE_0812
gene_biotype: protein_coding
description:
  PFAM: polysaccharide biosynthesis protein; KEGG: mlo:mll5270 probable succinoglycan transport protein.


ensembl_gene_id: RPE_0817
symbol: RPE_0817
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: RPE_0818
symbol: rpoH
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: RPE_0819
symbol: pckA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.


ensembl_gene_id: RPE_0820
symbol: RPE_0820
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpc:RPC_0598 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.


ensembl_gene_id: RPE_0821
symbol: RPE_0821
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpd:RPD_0367 response regulator receiver.


ensembl_gene_id: RPE_0822
symbol: RPE_0822
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_0596 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_0824
symbol: RPE_0824
gene_biotype: protein_coding
description:
  PFAM: PTS system fructose subfamily IIA component; KEGG: rpd:RPD_0370 PTS system fructose subfamily IIA component.


ensembl_gene_id: RPE_0827
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: RPE_0833
symbol: RPE_0833
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_2958 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_0835
symbol: RPE_0835
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpd:RPD_3218 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.


ensembl_gene_id: RPE_0836
symbol: RPE_0836
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_0877 ADP-ribosyl-(dinitrogen reductase) hydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/Crystallin J1.


ensembl_gene_id: RPE_0837
symbol: RPE_0837
gene_biotype: protein_coding
description:
  PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: rpc:RPC_0878 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase.


ensembl_gene_id: RPE_0843
symbol: pqqE
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).


ensembl_gene_id: RPE_0844
symbol: pqqD
gene_biotype: protein_coding
description:
  Coenzyme PQQ synthesis D; Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway.


ensembl_gene_id: RPE_0845
symbol: pqqC
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.


ensembl_gene_id: RPE_0846
symbol: pqqB
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.


ensembl_gene_id: RPE_0848
symbol: RPE_0848
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA2193 putative ABC transporter, perplasmic binding protein, branched chain amino acids.


ensembl_gene_id: RPE_0851
symbol: RPE_0851
gene_biotype: protein_coding
description:
  PFAM: Pyrrolo-quinoline quinone; KEGG: bja:blr6213 methanol dehydrogenase large subunit-like protein.


ensembl_gene_id: RPE_0853
symbol: RPE_0853
gene_biotype: protein_coding
description:
  SMART: extracellular solute-binding protein, family 3; KEGG: bja:bll6195 putative methanol oxidation protein.


ensembl_gene_id: RPE_0861
symbol: groL1
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: RPE_0862
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: RPE_0871
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase (homohexameric) / ATP phosphoribosyltransferase regulatory subunit; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: RPE_0872
symbol: RPE_0872
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase regulatory subunit; PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: rpb:RPB_1846 tRNA synthetase, class II (G, H, P and S).


ensembl_gene_id: RPE_0873
symbol: RPE_0873
gene_biotype: protein_coding
description:
  Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: RPE_0875
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: RPE_0877
symbol: RPE_0877
gene_biotype: protein_coding
description:
  Microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rpc:RPC_4708 peptidase U62, modulator of DNA gyrase.


ensembl_gene_id: RPE_0880
symbol: RPE_0880
gene_biotype: protein_coding
description:
  Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: RPE_0881
symbol: lpxK
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: RPE_0883
symbol: RPE_0883
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).


ensembl_gene_id: RPE_0884
symbol: RPE_0884
gene_biotype: protein_coding
description:
  SMART: extracellular solute-binding protein, family 3; KEGG: gsu:GSU1528 ABC transporter, periplasmic substrate-binding protein.


ensembl_gene_id: RPE_0886
symbol: RPE_0886
gene_biotype: protein_coding
description:
  TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ade:Adeh_1432 1-aminocyclopropane-1-carboxylate deaminase.


ensembl_gene_id: RPE_0887
symbol: RPE_0887
gene_biotype: protein_coding
description:
  PFAM: SbmABacA family protein; ABC transporter domain protein; KEGG: rpc:RPC_4701 ABC transporter-like.


ensembl_gene_id: RPE_0889
symbol: RPE_0889
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpc:RPC_4699 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_0892
symbol: RPE_0892
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpc:RPC_4696 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).


ensembl_gene_id: RPE_0893
symbol: RPE_0893
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_4695 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_0896
symbol: htpX
gene_biotype: protein_coding
description:
  HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B; PFAM: peptidase M48, Ste24p; KEGG: rpc:RPC_4692 peptidase M48, Ste24p; Belongs to the peptidase M48B family.


ensembl_gene_id: RPE_0900
symbol: RPE_0900
gene_biotype: protein_coding
description:
  PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpc:RPC_4686 peptidase C14, caspase catalytic subunit P20.


ensembl_gene_id: RPE_0901
symbol: opgH
gene_biotype: protein_coding
description:
  Glycosyl transferase, family 2; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: RPE_0902
symbol: opgG
gene_biotype: protein_coding
description:
  Periplasmic glucan biosynthesis protein, MdoG; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: RPE_0903
symbol: RPE_0903
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpc:RPC_4685 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_0905
symbol: RPE_0905
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: rpc:RPC_0885 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_0908
symbol: RPE_0908
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; peptidase C14, caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpb:RPB_0897 peptidase C14, caspase catalytic subunit P20.


ensembl_gene_id: RPE_0909
symbol: RPE_0909
gene_biotype: protein_coding
description:
  PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: rpc:RPC_0888 monooxygenase, FAD-binding.


ensembl_gene_id: RPE_0912
symbol: hmgA
gene_biotype: protein_coding
description:
  Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.


ensembl_gene_id: RPE_0913
symbol: RPE_0913
gene_biotype: protein_coding
description:
  Fumarylacetoacetate hydrolase; KEGG: rpb:RPB_0909 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: RPE_0914
symbol: hisS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; KEGG: rpb:RPB_1185 histidine--tRNA ligase.


ensembl_gene_id: RPE_0915
symbol: RPE_0915
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: rpc:RPC_0894 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RPE_0917
symbol: RPE_0917
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_0896 HAD-superfamily hydrolase, subfamily IIA.


ensembl_gene_id: RPE_0920
symbol: RPE_0920
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_0897 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_0921
symbol: rlmJ
gene_biotype: protein_coding
description:
  Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA.


ensembl_gene_id: RPE_0922
symbol: RPE_0922
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpc:RPC_0899 cold-shock DNA-binding domain protein.


ensembl_gene_id: RPE_0924
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: RPE_0925
symbol: RPE_0925
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rpc:RPC_0902 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: RPE_0926
symbol: RPE_0926
gene_biotype: protein_coding
description:
  TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rpb:RPB_1175 molybdopterin converting factor, subunit 1.


ensembl_gene_id: RPE_0928
symbol: RPE_0928
gene_biotype: protein_coding
description:
  Modification methylase, HemK family; KEGG: bja:blr7474 hypothetical adenine-specific methylase; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Belongs to the protein N5-glutamine methyltransferase family.


ensembl_gene_id: RPE_0929
symbol: RPE_0929
gene_biotype: protein_coding
description:
  TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: rpc:RPC_0906 conserved hypothetical protein 95.


ensembl_gene_id: RPE_0930
symbol: RPE_0930
gene_biotype: protein_coding
description:
  TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rpc:RPC_0907 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: RPE_0931
symbol: tadA
gene_biotype: protein_coding
description:
  tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: RPE_0932
symbol: RPE_0932
gene_biotype: protein_coding
description:
  PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rpc:RPC_0909 isoprenylcysteine carboxyl methyltransferase.


ensembl_gene_id: RPE_0933
symbol: RPE_0933
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: rpc:RPC_3227 transcriptional regulator, PadR-like family.


ensembl_gene_id: RPE_0934
symbol: RPE_0934
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpc:RPC_0910 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: RPE_0938
symbol: RPE_0938
gene_biotype: protein_coding
description:
  TIGRFAM: conserved hypothetical membrane protein; KEGG: rpc:RPC_0914 double-transmembrane region-like.


ensembl_gene_id: RPE_0940
symbol: RPE_0940
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: rpc:RPC_0916 ATPase associated with various cellular activities, AAA_3.


ensembl_gene_id: RPE_0944
symbol: RPE_0944
gene_biotype: protein_coding
description:
  PFAM: Polynucleotide adenylyltransferase region; KEGG: rpc:RPC_0920 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: RPE_0946
symbol: queE
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: RPE_0947
symbol: trmL
gene_biotype: protein_coding
description:
  tRNA/rRNA methyltransferase (SpoU); Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: RPE_0948
symbol: RPE_0948
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: RPE_0949
symbol: RPE_0949
gene_biotype: protein_coding
description:
  Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: RPE_0950
symbol: RPE_0950
gene_biotype: protein_coding
description:
  Carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; KEGG: rpc:RPC_0926 carboxymethylenebutenolidase.


ensembl_gene_id: RPE_0952
symbol: RPE_0952
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpc:RPC_0929 NADH dehydrogenase (quinone).


ensembl_gene_id: RPE_0955
symbol: RPE_0955
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpc:RPC_0932 NADH dehydrogenase (quinone).


ensembl_gene_id: RPE_0956
symbol: RPE_0956
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: rpc:RPC_0933 NADH-ubiquinone oxidoreductase, chain 49kDa.


ensembl_gene_id: RPE_0957
symbol: RPE_0957
gene_biotype: protein_coding
description:
  PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: bja:blr6344 probable hydrogenase-3 subunit G.


ensembl_gene_id: RPE_0958
symbol: RPE_0958
gene_biotype: protein_coding
description:
  TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: rpd:RPD_3849 outer membrane autotransporter barrel.


ensembl_gene_id: RPE_0961
symbol: RPE_0961
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_0937 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: RPE_0965
symbol: RPE_0965
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: RPE_0966
symbol: RPE_0966
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: RPE_0968
symbol: RPE_0968
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.


ensembl_gene_id: RPE_0969
symbol: RPE_0969
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_0945 two component, sigma54 specific, transcriptional regulator, fis family.


ensembl_gene_id: RPE_0976
symbol: RPE_0976
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_0956 methyltransferase type 12.


ensembl_gene_id: RPE_0977
symbol: RPE_0977
gene_biotype: protein_coding
description:
  PFAM: Ferritin, Dps family protein; KEGG: rpa:RPA1274 possible Dps protein family starvation-inducible DNA-binding protein; Belongs to the Dps family.


ensembl_gene_id: RPE_0979
symbol: carA
gene_biotype: protein_coding
description:
  TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: rpc:RPC_0960 carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.


ensembl_gene_id: RPE_0981
symbol: RPE_0981
gene_biotype: protein_coding
description:
  phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: RPE_0982
symbol: RPE_0982
gene_biotype: protein_coding
description:
  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rpc:RPC_0697 pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: RPE_0983
symbol: RPE_0983
gene_biotype: protein_coding
description:
  2-oxoglutarate ferredoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rpc:RPC_0696 thiamine pyrophosphate enzyme-like TPP-binding.


ensembl_gene_id: RPE_0984
symbol: RPE_0984
gene_biotype: protein_coding
description:
  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0695 pyruvate flavodoxin/ferredoxin oxidoreductase-like.


ensembl_gene_id: RPE_0985
symbol: RPE_0985
gene_biotype: protein_coding
description:
  Indolepyruvate ferredoxin oxidoreductase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rpc:RPC_0694 pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: RPE_0986
symbol: RPE_0986
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate enzyme domain protein TPP-binding protein; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.


ensembl_gene_id: RPE_0987
symbol: RPE_0987
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; KEGG: rpc:RPC_0692 phenylacetic acid degradation operon negative regulatory protein PaaX.


ensembl_gene_id: RPE_0988
symbol: RPE_0988
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpc:RPC_0691 phenylacetate-CoA oxygenase, PaaG subunit.


ensembl_gene_id: RPE_0989
symbol: RPE_0989
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: rpd:RPD_1825 phenylacetic acid degradation B.


ensembl_gene_id: RPE_0990
symbol: RPE_0990
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpc:RPC_0689 phenylacetate-CoA oxygenase, PaaI subunit.


ensembl_gene_id: RPE_0991
symbol: RPE_0991
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: rpd:RPD_1827 phenylacetate-CoA oxygenase, PaaJ subunit.


ensembl_gene_id: RPE_0992
symbol: RPE_0992
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rpc:RPC_0687 phenylacetate-CoA oxygenase/reductase, PaaK subunit.


ensembl_gene_id: RPE_0993
symbol: RPE_0993
gene_biotype: protein_coding
description:
  PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: rpc:RPC_0686 ethyl tert-butyl ether degradation EthD.


ensembl_gene_id: RPE_0994
symbol: RPE_0994
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: aldehyde dehydrogenase; MaoC domain protein dehydratase; KEGG: rpc:RPC_0685 phenylacetic acid degradation protein PaaN.


ensembl_gene_id: RPE_0997
symbol: RPE_0997
gene_biotype: protein_coding
description:
  TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_0682 phenylacetic acid degradation protein PaaD.


ensembl_gene_id: RPE_0998
symbol: RPE_0998
gene_biotype: protein_coding
description:
  Enoyl-CoA hydratase; TIGRFAM: phenylacetate degradation probable enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_0681 enoyl-CoA hydratase PaaB; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RPE_0999
symbol: RPE_0999
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA4019 putative branched-chain amino acid ABC transporter system substrate-binding protein.


ensembl_gene_id: RPE_1000
symbol: RPE_1000
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpa:RPA4020 possible branched-chain amino acid transport system permease protein.


ensembl_gene_id: RPE_1001
symbol: RPE_1001
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpa:RPA4021 putative branched-chain amino acid ABC transport system permease protein livm (liv-I protein m).


ensembl_gene_id: RPE_1002
symbol: RPE_1002
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4022 putative branched-chain amino acid ABC transport system, ATP-binding protein.


ensembl_gene_id: RPE_1005
symbol: RPE_1005
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpd:RPD_1558 response regulator receiver.


ensembl_gene_id: RPE_1006
symbol: RPE_1006
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: rpd:RPD_1559 ATP-binding region, ATPase-like.


ensembl_gene_id: RPE_1007
symbol: RPE_1007
gene_biotype: protein_coding
description:
  Heme peroxidase; PFAM: Hemolysin-type calcium-binding region; Animal heme peroxidase; KEGG: rpd:RPD_1560 Animal heme peroxidase.


ensembl_gene_id: RPE_1008
symbol: RPE_1008
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_1561 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: RPE_1010
symbol: RPE_1010
gene_biotype: protein_coding
description:
  TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rpd:RPD_1563 type I secretion membrane fusion protein, HlyD.


ensembl_gene_id: RPE_1022
symbol: RPE_1022
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: rpd:RPD_3945 protein of unknown function DUF262.


ensembl_gene_id: RPE_1038
symbol: RPE_1038
gene_biotype: protein_coding
description:
  Phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase; PFAM: putative methyltransferase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_0988 phosphatidylethanolamine N-methyltransferase.


ensembl_gene_id: RPE_1039
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: RPE_1040
symbol: RPE_1040
gene_biotype: protein_coding
description:
  PFAM: flagellar hook-length control protein; KEGG: rpc:RPC_0986 flagellar hook-length control protein.


ensembl_gene_id: RPE_1055
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: RPE_1056
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family.


ensembl_gene_id: RPE_1060
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: RPE_1062
symbol: RPE_1062
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: rpc:RPC_1145 RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: RPE_1063
symbol: RPE_1063
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rpa:RPA0949 putative multidrug efflux protein (NorM).


ensembl_gene_id: RPE_1064
symbol: RPE_1064
gene_biotype: protein_coding
description:
  TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: bja:bll2649 putative hemolysin.


ensembl_gene_id: RPE_1065
symbol: RPE_1065
gene_biotype: protein_coding
description:
  PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: rpd:RPD_4306 nucleoside 2-deoxyribosyltransferase.


ensembl_gene_id: RPE_1067
symbol: dxs
gene_biotype: protein_coding
description:
  1-Deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: RPE_1068
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: RPE_1070
symbol: RPE_1070
gene_biotype: protein_coding
description:
  PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: rpc:RPC_1152 5'-nucleotidase-like; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: RPE_1072
symbol: RPE_1072
gene_biotype: protein_coding
description:
  PFAM: Carboxylesterase, type B; protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rme:Rmet_5225 protein of unknown function DUF1214.


ensembl_gene_id: RPE_1074
symbol: RPE_1074
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpc:RPC_1156 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_1078
symbol: RPE_1078
gene_biotype: protein_coding
description:
  Recombinase; PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein.


ensembl_gene_id: RPE_1081
symbol: RPE_1081
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: bmb:BruAb1_1071 GalE-1, UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: RPE_1085
symbol: RPE_1085
gene_biotype: protein_coding
description:
  Type I secretion system ATPase; KEGG: bja:bll6293 HlyB/MsbA family ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase.


ensembl_gene_id: RPE_1086
symbol: RPE_1086
gene_biotype: protein_coding
description:
  TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bja:bll6292 probable Hemolysin secretion protein D.


ensembl_gene_id: RPE_1089
symbol: RPE_1089
gene_biotype: protein_coding
description:
  PFAM: lipopolysaccharide biosynthesis; KEGG: ppu:PP3127 exopolysaccharide transport protein, putative.


ensembl_gene_id: RPE_1094
symbol: RPE_1094
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: jan:Jann_4236 tetratricopeptide TPR_2.


ensembl_gene_id: RPE_1096
symbol: RPE_1096
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; glycosyl transferase WecB/TagA/CpsF; KEGG: gka:GK3311 teichoic acid biosynthesis; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: RPE_1097
symbol: RPE_1097
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase, family 2; KEGG: ppu:PP3140 glycosyl transferase, group 2 family protein.


ensembl_gene_id: RPE_1098
symbol: RPE_1098
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ccr:CC1146 NAD-dependent epimerase/dehydratase family protein.


ensembl_gene_id: RPE_1102
symbol: RPE_1102
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase, family 2; KEGG: ppu:PP3137 glycosyl transferase, group 2 family protein.


ensembl_gene_id: RPE_1116
symbol: RPE_1116
gene_biotype: protein_coding
description:
  PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: dar:Daro_2421 membrane bound O-acyl transferase, MBOAT; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: RPE_1120
symbol: RPE_1120
gene_biotype: protein_coding
description:
  PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase.


ensembl_gene_id: RPE_1121
symbol: RPE_1121
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; KEGG: rpd:RPD_2373 regulatory protein, LuxR.


ensembl_gene_id: RPE_1125
symbol: RPE_1125
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpb:RPB_3063 ATPase.


ensembl_gene_id: RPE_1128
symbol: RPE_1128
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3060 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_1141
symbol: RPE_1141
gene_biotype: protein_coding
description:
  PFAM: transposase, mutator type; transposase, IS4 family protein; KEGG: rpc:RPC_3939 transposase, mutator type.


ensembl_gene_id: RPE_1146
symbol: RPE_1146
gene_biotype: protein_coding
description:
  ATPase, FliI/YscN family; KEGG: rpc:RPC_1086 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.


ensembl_gene_id: RPE_1147
symbol: RPE_1147
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1087 flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RPE_1150
symbol: RPE_1150
gene_biotype: protein_coding
description:
  PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: rpc:RPC_1089 flagellar motor switch protein FliM.


ensembl_gene_id: RPE_1154
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: RPE_1156
symbol: RPE_1156
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1095 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RPE_1157
symbol: fliE
gene_biotype: protein_coding
description:
  PFAM: flagellar hook-basal body complex protein FliE; KEGG: rpc:RPC_1096 flagellar hook-basal body complex protein FliE.


ensembl_gene_id: RPE_1158
symbol: RPE_1158
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1097 flagellar basal-body rod FlgG; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RPE_1159
symbol: RPE_1159
gene_biotype: protein_coding
description:
  Flageller protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.


ensembl_gene_id: RPE_1160
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: RPE_1162
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: RPE_1163
symbol: RPE_1163
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: RPE_1164
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: RPE_1172
symbol: RPE_1172
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: rpc:RPC_1111 flagellar basal body FlaE.


ensembl_gene_id: RPE_1173
symbol: RPE_1173
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1112 flagellar hook-associated protein.


ensembl_gene_id: RPE_1174
symbol: RPE_1174
gene_biotype: protein_coding
description:
  Flagellar hook-associated 3 family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: RPE_1178
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: RPE_1179
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: RPE_1180
symbol: RPE_1180
gene_biotype: protein_coding
description:
  PFAM: type III secretion system inner membrane R protein; KEGG: rpc:RPC_1119 type III secretion system inner membrane R protein.


ensembl_gene_id: RPE_1185
symbol: RPE_1185
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator domain protein; KEGG: rpc:RPC_1124 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_1192
symbol: RPE_1192
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: gme:Gmet_2428 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_1193
symbol: RPE_1193
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: ccr:CC0433 chemotaxis protein CheA.


ensembl_gene_id: RPE_1195
symbol: RPE_1195
gene_biotype: protein_coding
description:
  KEGG: vch:VC0098 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_1196
symbol: RPE_1196
gene_biotype: protein_coding
description:
  MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.


ensembl_gene_id: RPE_1197
symbol: cheD
gene_biotype: protein_coding
description:
  CheD, stimulates methylation of MCP proteins; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: RPE_1198
symbol: cheB
gene_biotype: protein_coding
description:
  Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: RPE_1200
symbol: RPE_1200
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb0579 anti-anti-sigma regulatory factor.


ensembl_gene_id: RPE_1201
symbol: RPE_1201
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: mag:amb2658 hypothetical protein.


ensembl_gene_id: RPE_1202
symbol: RPE_1202
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mag:amb2659 serine phosphatase RsbU.


ensembl_gene_id: RPE_1204
symbol: RPE_1204
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; KEGG: dar:Daro_3006 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: RPE_1211
symbol: RPE_1211
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_0615 ATPase associated with various cellular activities, AAA_5.


ensembl_gene_id: RPE_1212
symbol: RPE_1212
gene_biotype: protein_coding
description:
  PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; KEGG: rfr:Rfer_0524 hypothetical protein.


ensembl_gene_id: RPE_1213
symbol: RPE_1213
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_0523 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_1215
symbol: RPE_1215
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_2184 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_1219
symbol: RPE_1219
gene_biotype: protein_coding
description:
  TIGRFAM: urea amidolyase related protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpd:RPD_2188 allophanate hydrolase subunit 2.


ensembl_gene_id: RPE_1225
symbol: RPE_1225
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpa:RPA0095 putative multidrug efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_1226
symbol: RPE_1226
gene_biotype: protein_coding
description:
  TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rpa:RPA0096 putative multidrug-efflux transport protein.


ensembl_gene_id: RPE_1228
symbol: RPE_1228
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: rpb:RPB_0946 iron-containing alcohol dehydrogenase.


ensembl_gene_id: RPE_1229
symbol: RPE_1229
gene_biotype: protein_coding
description:
  PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rpd:RPD_1160 NADH ubiquinone oxidoreductase, 20 kDa subunit.


ensembl_gene_id: RPE_1230
symbol: RPE_1230
gene_biotype: protein_coding
description:
  PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rpd:RPD_1161 nickel-dependent hydrogenase, large subunit.


ensembl_gene_id: RPE_1231
symbol: RPE_1231
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_1162 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein.


ensembl_gene_id: RPE_1232
symbol: RPE_1232
gene_biotype: protein_coding
description:
  PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rpc:RPC_3771 nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.


ensembl_gene_id: RPE_1233
symbol: RPE_1233
gene_biotype: protein_coding
description:
  TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: rpa:RPA0964 Ni/Fe-hydrogenase 1 B-type cytochrome subunit.


ensembl_gene_id: RPE_1234
symbol: RPE_1234
gene_biotype: protein_coding
description:
  HyaD peptidase. Aspartic peptidase. MEROPS family A31; TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rpa:RPA0965 hydrogenase maturation protein hupD.


ensembl_gene_id: RPE_1235
symbol: RPE_1235
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rpd:RPD_1167 hydrogenase assembly chaperone HypC/HupF.


ensembl_gene_id: RPE_1236
symbol: RPE_1236
gene_biotype: protein_coding
description:
  PFAM: hydrogenase-1 expression HyaE; KEGG: rpd:RPD_1168 hydrogenase-1 expression HyaE; Belongs to the HupG/HyaE family.


ensembl_gene_id: RPE_1238
symbol: RPE_1238
gene_biotype: protein_coding
description:
  PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rpd:RPD_1170 rubredoxin-type Fe(Cys)4 protein; Belongs to the rubredoxin family.


ensembl_gene_id: RPE_1241
symbol: hypA
gene_biotype: protein_coding
description:
  Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: RPE_1242
symbol: RPE_1242
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rpd:RPD_1174 hydrogenase accessory protein HypB.


ensembl_gene_id: RPE_1243
symbol: RPE_1243
gene_biotype: protein_coding
description:
  (NiFe) hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.


ensembl_gene_id: RPE_1244
symbol: RPE_1244
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rpc:RPC_3760 hydrogenase assembly chaperone HypC/HupF.


ensembl_gene_id: RPE_1245
symbol: RPE_1245
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rpa:RPA0977 hydrogenase expression/formation protein hypD; Belongs to the HypD family.


ensembl_gene_id: RPE_1246
symbol: RPE_1246
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rpd:RPD_1178 hydrogenase expression/formation protein HypE.


ensembl_gene_id: RPE_1247
symbol: RPE_1247
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_1179 sigma-54 factor, interaction region.


ensembl_gene_id: RPE_1248
symbol: RPE_1248
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; KEGG: rpd:RPD_1180 ATP-binding region, ATPase-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_1253
symbol: RPE_1253
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpc:RPC_1191 thiamine pyrophosphate enzyme-like TPP binding region; Belongs to the TPP enzyme family.


ensembl_gene_id: RPE_1254
symbol: RPE_1254
gene_biotype: protein_coding
description:
  PFAM: regulatory protein, AsnC/Lrp family; KEGG: rpc:RPC_1192 transcriptional regulator, AsnC family.


ensembl_gene_id: RPE_1258
symbol: RPE_1258
gene_biotype: protein_coding
description:
  Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpb:RPB_1752 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.


ensembl_gene_id: RPE_1259
symbol: RPE_1259
gene_biotype: protein_coding
description:
  Sulfite reductase (NADPH) alpha subunit; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; KEGG: rpb:RPB_1753 oxidoreductase, FAD/NAD(P)-binding.


ensembl_gene_id: RPE_1260
symbol: RPE_1260
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rpa:RPA3710 possible ferredoxin-nitrite reductase.


ensembl_gene_id: RPE_1261
symbol: RPE_1261
gene_biotype: protein_coding
description:
  Assimilatory nitrate reductase (NADH) beta subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: rpb:RPB_1755 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: RPE_1263
symbol: RPE_1263
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_1758 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: RPE_1264
symbol: RPE_1264
gene_biotype: protein_coding
description:
  TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1759 nitrate transport permease.


ensembl_gene_id: RPE_1265
symbol: RPE_1265
gene_biotype: protein_coding
description:
  ABC-type nitrate transport system periplasmic component; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_1760 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_1267
symbol: RPE_1267
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; ANTAR domain protein; KEGG: rpc:RPC_1211 response regulator receiver (CheY-like) and ANTAR domain protein.


ensembl_gene_id: RPE_1272
symbol: RPE_1272
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xcv:XCV0196 putative glyoxalase family protein.


ensembl_gene_id: RPE_1273
symbol: RPE_1273
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1226 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.


ensembl_gene_id: RPE_1274
symbol: RPE_1274
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1227 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: RPE_1275
symbol: RPE_1275
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_1228 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_1278
symbol: RPE_1278
gene_biotype: protein_coding
description:
  Alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase, group 1; glycosyl transferase, family 20; KEGG: rpb:RPB_1021 alpha,alpha-trehalose-phosphate synthase (UDP-forming).


ensembl_gene_id: RPE_1280
symbol: RPE_1280
gene_biotype: protein_coding
description:
  TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: csa:Csal_1795 anion transporter.


ensembl_gene_id: RPE_1281
symbol: RPE_1281
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rpc:RPC_1233 phosphoglucomutase, alpha-D-glucose phosphate-specific.


ensembl_gene_id: RPE_1282
symbol: RPE_1282
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; KEGG: rpc:RPC_2210 transcriptional regulator, LuxR family.


ensembl_gene_id: RPE_1286
symbol: RPE_1286
gene_biotype: protein_coding
description:
  Putative transcriptional regulators, CopG/Arc/MetJ family; TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rpc:RPC_2215 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain.


ensembl_gene_id: RPE_1290
symbol: RPE_1290
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpd:RPD_3789 response regulator receiver.


ensembl_gene_id: RPE_1300
symbol: RPE_1300
gene_biotype: protein_coding
description:
  PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: rpd:RPD_3777 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like.


ensembl_gene_id: RPE_1305
symbol: RPE_1305
gene_biotype: protein_coding
description:
  Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: RPE_1306
symbol: RPE_1306
gene_biotype: protein_coding
description:
  Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.


ensembl_gene_id: RPE_1308
symbol: RPE_1308
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1252 transcriptional regulator, AraC family; TIGRFAM: PAS sensor protein; PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_1310
symbol: RPE_1310
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_1253 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_1311
symbol: RPE_1311
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_3380 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_1312
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: RPE_1322
symbol: RPE_1322
gene_biotype: protein_coding
description:
  PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: jan:Jann_0393 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: RPE_1324
symbol: RPE_1324
gene_biotype: protein_coding
description:
  Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; KEGG: rpc:RPC_1290 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: RPE_1325
symbol: RPE_1325
gene_biotype: protein_coding
description:
  hydroxyneurosporene-O-methyltransferase; PFAM: O-methyltransferase, family 2; Methyltransferase type 12; KEGG: rpc:RPC_1291 O-methyltransferase, family 2.


ensembl_gene_id: RPE_1326
symbol: RPE_1326
gene_biotype: protein_coding
description:
  TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_1292 chlorophyll synthesis pathway, BchC.


ensembl_gene_id: RPE_1327
symbol: RPE_1327
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1293 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: RPE_1328
symbol: RPE_1328
gene_biotype: protein_coding
description:
  TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpc:RPC_1294 chlorophyllide reductase subunit Y.


ensembl_gene_id: RPE_1329
symbol: RPE_1329
gene_biotype: protein_coding
description:
  TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase, component 1; protein of unknown function DUF1197; KEGG: rpc:RPC_1295 chlorophyllide reductase subunit Z.


ensembl_gene_id: RPE_1333
symbol: RPE_1333
gene_biotype: protein_coding
description:
  TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: rpc:RPC_1299 photosynthetic reaction center L subunit.


ensembl_gene_id: RPE_1334
symbol: RPE_1334
gene_biotype: protein_coding
description:
  Photosynthetic reaction center, M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.


ensembl_gene_id: RPE_1335
symbol: RPE_1335
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1301 putative PAS/PAC sensor protein; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix, Fis-type; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_1336
symbol: RPE_1336
gene_biotype: protein_coding
description:
  TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: rpb:RPB_3992 bacteriochlorophyll/chlorophyll synthetase.


ensembl_gene_id: RPE_1338
symbol: RPE_1338
gene_biotype: protein_coding
description:
  TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: rpb:RPB_3990 geranylgeranyl reductase.


ensembl_gene_id: RPE_1339
symbol: RPE_1339
gene_biotype: protein_coding
description:
  TspO and MBR like proteins; PFAM: TspO/MBR family protein; KEGG: rpc:RPC_1305 TspO and MBR like proteins.


ensembl_gene_id: RPE_1342
symbol: RPE_1342
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1308 putative PAS/PAC sensor protein; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_1343
symbol: RPE_1343
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein; PAS fold domain protein; KEGG: rpc:RPC_1309 putative PAS/PAC sensor protein.


ensembl_gene_id: RPE_1346
symbol: RPE_1346
gene_biotype: protein_coding
description:
  PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: rpc:RPC_1312 2-vinyl bacteriochlorophyllide hydratase.


ensembl_gene_id: RPE_1347
symbol: bchN
gene_biotype: protein_coding
description:
  Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.


ensembl_gene_id: RPE_1348
symbol: bchB
gene_biotype: protein_coding
description:
  Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.


ensembl_gene_id: RPE_1349
symbol: RPE_1349
gene_biotype: protein_coding
description:
  Hydrogenobyrinic acid a,c-diamide cobaltochelatase; KEGG: rpd:RPD_3734 magnesium-chelatase, subunit H; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase.


ensembl_gene_id: RPE_1350
symbol: bchL
gene_biotype: protein_coding
description:
  Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.


ensembl_gene_id: RPE_1351
symbol: RPE_1351
gene_biotype: protein_coding
description:
  TIGRFAM: magnesium protoporphyrin O-methyltransferase; PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpa:RPA1546 Mg-protoporphyrin IX methyl transferase.


ensembl_gene_id: RPE_1353
symbol: RPE_1353
gene_biotype: protein_coding
description:
  PFAM: photosynthetic reaction centre, H-chain; PRC-barrel domain protein; KEGG: rpc:RPC_1319 photosynthetic reaction centre, H-chain.


ensembl_gene_id: RPE_1357
symbol: acsF
gene_biotype: protein_coding
description:
  Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.


ensembl_gene_id: RPE_1359
symbol: RPE_1359
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1325 5-aminolevulinic acid synthase; TIGRFAM: 5-aminolevulinic acid synthase; PFAM: aminotransferase, class I and II; aminotransferase class-III.


ensembl_gene_id: RPE_1360
symbol: RPE_1360
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_1326 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_1361
symbol: cbbL
gene_biotype: protein_coding
description:
  Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.


ensembl_gene_id: RPE_1362
symbol: RPE_1362
gene_biotype: protein_coding
description:
  PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: rpc:RPC_1328 ribulose-bisphosphate carboxylase.


ensembl_gene_id: RPE_1363
symbol: RPE_1363
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_1329 AAA ATPase, central region.


ensembl_gene_id: RPE_1365
symbol: RPE_1365
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1331 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase.


ensembl_gene_id: RPE_1366
symbol: RPE_1366
gene_biotype: protein_coding
description:
  Oligopeptidase B. Serine peptidase. MEROPS family S09A; PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: rpc:RPC_1332 oligopeptidase B.


ensembl_gene_id: RPE_1368
symbol: RPE_1368
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1352 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: RPE_1370
symbol: RPE_1370
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; KEGG: rpc:RPC_1355 multi-sensor hybrid histidine kinase.


ensembl_gene_id: RPE_1373
symbol: RPE_1373
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_1356 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_1374
symbol: RPE_1374
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: rpd:RPD_4073 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_1377
symbol: RPE_1377
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rpc:RPC_1360 transcriptional regulator, DeoR family.


ensembl_gene_id: RPE_1378
symbol: RPE_1378
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_1361 FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: RPE_1379
symbol: RPE_1379
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_1362 ABC transporter related.


ensembl_gene_id: RPE_1380
symbol: RPE_1380
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpd:RPD_4067 ABC transporter related.


ensembl_gene_id: RPE_1381
symbol: RPE_1381
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4214 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_1382
symbol: RPE_1382
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_1365 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: RPE_1384
symbol: RPE_1384
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_4063 extracellular solute-binding protein, family 1.


ensembl_gene_id: RPE_1385
symbol: RPE_1385
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rpc:RPC_1368 NADH:flavin oxidoreductase/NADH oxidase.


ensembl_gene_id: RPE_1386
symbol: RPE_1386
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpc:RPC_1370 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_1387
symbol: RPE_1387
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpc:RPC_1371 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_1390
symbol: RPE_1390
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1374 extracellular ligand-binding receptor.


ensembl_gene_id: RPE_1391
symbol: RPE_1391
gene_biotype: protein_coding
description:
  TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpb:RPB_4203 lytic murein transglycosylase.


ensembl_gene_id: RPE_1392
symbol: RPE_1392
gene_biotype: protein_coding
description:
  TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: rpc:RPC_1376 addiction module toxin, RelE/StbE.


ensembl_gene_id: RPE_1393
symbol: RPE_1393
gene_biotype: protein_coding
description:
  TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: rpc:RPC_1377 RelB antitoxin.


ensembl_gene_id: RPE_1394
symbol: RPE_1394
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rpc:RPC_1378 transcriptional regulator, XRE family.


ensembl_gene_id: RPE_1395
symbol: RPE_1395
gene_biotype: protein_coding
description:
  PFAM: isocitrate lyase and phosphorylmutase; KEGG: rpb:RPB_4199 isocitrate lyase and phosphorylmutase.


ensembl_gene_id: RPE_1402
symbol: RPE_1402
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; KEGG: eba:p1B136 putative histone acetyltransferase-related protein.


ensembl_gene_id: RPE_1404
symbol: RPE_1404
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpd:RPD_4046 TonB-dependent receptor.


ensembl_gene_id: RPE_1410
symbol: RPE_1410
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: rpc:RPC_1399 riboflavin biosynthesis protein RibF; Belongs to the ribF family.


ensembl_gene_id: RPE_1411
symbol: RPE_1411
gene_biotype: protein_coding
description:
  PFAM: transferase hexapeptide repeat containing protein; KEGG: rpc:RPC_1398 transferase hexapeptide repeat.


ensembl_gene_id: RPE_1414
symbol: ileS
gene_biotype: protein_coding
description:
  Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).


ensembl_gene_id: RPE_1415
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II. Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: RPE_1417
symbol: RPE_1417
gene_biotype: protein_coding
description:
  PFAM: peptidase M16 domain protein; KEGG: rpc:RPC_1392 peptidase M16-like; Belongs to the peptidase M16 family.


ensembl_gene_id: RPE_1420
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: RPE_1421
symbol: RPE_1421
gene_biotype: protein_coding
description:
  Putative transcriptional regulators, CopG/Arc/MetJ family; KEGG: ava:Ava_B0335 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.


ensembl_gene_id: RPE_1423
symbol: RPE_1423
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1388 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV.


ensembl_gene_id: RPE_1425
symbol: RPE_1425
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_1386 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_1426
symbol: RPE_1426
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1385 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_1427
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: RPE_1429
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: RPE_1430
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: RPE_1432
symbol: RPE_1432
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF152; KEGG: rpa:RPA4360 DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: RPE_1434
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: RPE_1437
symbol: rplY
gene_biotype: protein_coding
description:
  LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: RPE_1438
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: RPE_1439
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: RPE_1447
symbol: RPE_1447
gene_biotype: protein_coding
description:
  PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1426 ABC transporter related.


ensembl_gene_id: RPE_1448
symbol: RPE_1448
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpc:RPC_1427 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: RPE_1449
symbol: RPE_1449
gene_biotype: protein_coding
description:
  TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: rpc:RPC_1428 lipopolysaccharide heptosyltransferase I.


ensembl_gene_id: RPE_1450
symbol: RPE_1450
gene_biotype: protein_coding
description:
  D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: rpc:RPC_1429 HAD-superfamily hydrolase subfamily IIIA.


ensembl_gene_id: RPE_1451
symbol: RPE_1451
gene_biotype: protein_coding
description:
  TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: rpc:RPC_1430 lipopolysaccharide heptosyltransferase II.


ensembl_gene_id: RPE_1452
symbol: hldD
gene_biotype: protein_coding
description:
  ADP-glyceromanno-heptose 6-epimerase precursor; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.


ensembl_gene_id: RPE_1453
symbol: hldE
gene_biotype: protein_coding
description:
  D-beta-D-heptose 1-phosphate adenylyltransferase; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.


ensembl_gene_id: RPE_1454
symbol: RPE_1454
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpc:RPC_1433 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: RPE_1455
symbol: RPE_1455
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rpc:RPC_1434 oxidoreductase-like.


ensembl_gene_id: RPE_1456
symbol: RPE_1456
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rpd:RPD_1620 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: RPE_1460
symbol: RPE_1460
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_1439 carbon-monoxide dehydrogenase.


ensembl_gene_id: RPE_1463
symbol: RPE_1463
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1443 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.


ensembl_gene_id: RPE_1464
symbol: RPE_1464
gene_biotype: protein_coding
description:
  phosphatidyl-N-methylethanolamine N-methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_1444 phosphatidylethanolamine N-methyltransferase.


ensembl_gene_id: RPE_1467
symbol: RPE_1467
gene_biotype: protein_coding
description:
  L-threonine ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpc:RPC_1447 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: RPE_1469
symbol: RPE_1469
gene_biotype: protein_coding
description:
  PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: rpc:RPC_1450 major facilitator superfamily MFS_1.


ensembl_gene_id: RPE_1470
symbol: RPE_1470
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rpc:RPC_1451 mandelate racemase/muconate lactonizing enzyme.


ensembl_gene_id: RPE_1478
symbol: RPE_1478
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: rpd:RPD_1645 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: RPE_1482
symbol: RPE_1482
gene_biotype: protein_coding
description:
  Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1221 periplasmic sensor hybrid histidine kinase.


ensembl_gene_id: RPE_1483
symbol: RPE_1483
gene_biotype: protein_coding
description:
  Periplasmic sensor diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; KEGG: rpc:RPC_1464 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).


ensembl_gene_id: RPE_1485
symbol: RPE_1485
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_1466 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_1500
symbol: RPE_1500
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase; KEGG: rpc:RPC_1480 twin-arginine translocation pathway signal; TIGRFAM: methionine-R-sulfoxide reductase; Twin-arginine translocation pathway signal; PFAM: Methionine sulfoxide reductase B.


ensembl_gene_id: RPE_1503
symbol: RPE_1503
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: rpb:RPB_3817 hypothetical protein.


ensembl_gene_id: RPE_1504
symbol: RPE_1504
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1486 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RPE_1505
symbol: RPE_1505
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: RPE_1507
symbol: RPE_1507
gene_biotype: protein_coding
description:
  D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: cbu:CBU_0673 histidine biosynthesis bifunctional protein HisB.


ensembl_gene_id: RPE_1509
symbol: RPE_1509
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cbu:CBU_0676 NAD dependent epimerase/dehydratase.


ensembl_gene_id: RPE_1510
symbol: RPE_1510
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cbu:CBU_0677 NAD dependent epimerase/dehydratase family protein.


ensembl_gene_id: RPE_1511
symbol: RPE_1511
gene_biotype: protein_coding
description:
  Cytidyltransferase-related domain; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: RPE_1512
symbol: RPE_1512
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: cbu:CBU_0679 oxidoreductase, Gfo/Idh/MocA family.


ensembl_gene_id: RPE_1513
symbol: RPE_1513
gene_biotype: protein_coding
description:
  PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: cbu:CBU_0680 UDP-glucose/GDP-mannose dehydrogenase family protein.


ensembl_gene_id: RPE_1514
symbol: RPE_1514
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: cbu:CBU_0681 hypothetical protein.


ensembl_gene_id: RPE_1515
symbol: RPE_1515
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cbu:CBU_0682 hypothetical protein.


ensembl_gene_id: RPE_1516
symbol: RPE_1516
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpa:RPA3925 putative dTDP-glucose 4,6-dehydratase.


ensembl_gene_id: RPE_1518
symbol: RPE_1518
gene_biotype: protein_coding
description:
  Transketolase subunit B; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: bja:blr5427 hypothetical transketolase family protein.


ensembl_gene_id: RPE_1520
symbol: RPE_1520
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nfa:nfa29060 hypothetical protein.


ensembl_gene_id: RPE_1521
symbol: RPE_1521
gene_biotype: protein_coding
description:
  PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb0075 predicted pyridoxal phosphate-dependent enzyme; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: RPE_1522
symbol: RPE_1522
gene_biotype: protein_coding
description:
  PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: nwi:Nwi_0650 hypothetical protein.


ensembl_gene_id: RPE_1523
symbol: RPE_1523
gene_biotype: protein_coding
description:
  Protein of unknown function DUF1522; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: RPE_1524
symbol: RPE_1524
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpb:RPB_3801 TPR repeat protein.


ensembl_gene_id: RPE_1533
symbol: dksA
gene_biotype: protein_coding
description:
  Transcriptional regulators, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: RPE_1534
symbol: RPE_1534
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4407 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_1537
symbol: RPE_1537
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1506 flagellar basal-body rod FlgG; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RPE_1538
symbol: RPE_1538
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1507 flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RPE_1540
symbol: RPE_1540
gene_biotype: protein_coding
description:
  PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: rpc:RPC_1509 flagellar motor switch protein FliM.


ensembl_gene_id: RPE_1547
symbol: RPE_1547
gene_biotype: protein_coding
description:
  KEGG: pfl:PFL_3578 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: RPE_1551
symbol: RPE_1551
gene_biotype: protein_coding
description:
  Flagellar basal body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: RPE_1552
symbol: RPE_1552
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1518 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RPE_1553
symbol: fliE-2
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rpc:RPC_1519 flagellar hook-basal body complex protein FliE.


ensembl_gene_id: RPE_1555
symbol: RPE_1555
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: RPE_1557
symbol: RPE_1557
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1524 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_1560
symbol: RPE_1560
gene_biotype: protein_coding
description:
  PFAM: import inner membrane translocase, subunit Tim44; KEGG: rpc:RPC_1526 import inner membrane translocase, subunit Tim44.


ensembl_gene_id: RPE_1562
symbol: RPE_1562
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, C-terminal domain; KEGG: rpc:RPC_1528 glutathione S-transferase-like.


ensembl_gene_id: RPE_1566
symbol: RPE_1566
gene_biotype: protein_coding
description:
  PFAM: transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_3955 transposase IS116/IS110/IS902.


ensembl_gene_id: RPE_1571
symbol: RPE_1571
gene_biotype: protein_coding
description:
  Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: RPE_1575
symbol: RPE_1575
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: RPE_1580
symbol: RPE_1580
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpb:RPB_3757 transcriptional regulator, XRE family.


ensembl_gene_id: RPE_1583
symbol: RPE_1583
gene_biotype: protein_coding
description:
  PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpb:RPB_3754 peptidase C14, caspase catalytic subunit P20.


ensembl_gene_id: RPE_1594
symbol: recA
gene_biotype: protein_coding
description:
  RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: RPE_1595
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: RPE_1596
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: RPE_1597
symbol: RPE_1597
gene_biotype: protein_coding
description:
  TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: rpd:RPD_1733 glycine cleavage system T protein.


ensembl_gene_id: RPE_1598
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: RPE_1599
symbol: RPE_1599
gene_biotype: protein_coding
description:
  PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: rpc:RPC_1575 peptidase S9, prolyl oligopeptidase active site region.


ensembl_gene_id: RPE_1600
symbol: RPE_1600
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rpb:RPB_3734 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: RPE_1601
symbol: RPE_1601
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rpc:RPC_1573 potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: RPE_1602
symbol: RPE_1602
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1576 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.


ensembl_gene_id: RPE_1603
symbol: trmJ
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: RPE_1604
symbol: RPE_1604
gene_biotype: protein_coding
description:
  Putative transcriptional regulators, CopG/Arc/MetJ family; KEGG: rru:Rru_A3537 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.


ensembl_gene_id: RPE_1605
symbol: RPE_1605
gene_biotype: protein_coding
description:
  PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: rpc:RPC_1580 GreA/GreB family elongation factor.


ensembl_gene_id: RPE_1607
symbol: purC-2
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_3719 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.


ensembl_gene_id: RPE_1608
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assi [...]


ensembl_gene_id: RPE_1610
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: RPE_1613
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: RPE_1620
symbol: RPE_1620
gene_biotype: protein_coding
description:
  TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rpd:RPD_1760 glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: RPE_1625
symbol: RPE_1625
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hch:HCH_03828 lactoylglutathione lyase.


ensembl_gene_id: RPE_1627
symbol: RPE_1627
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: rpc:RPC_2348 putative signal transduction histidine kinase.


ensembl_gene_id: RPE_1630
symbol: RPE_1630
gene_biotype: protein_coding
description:
  PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bja:blr5707 putative threonine aldolase.


ensembl_gene_id: RPE_1631
symbol: rpsD
gene_biotype: protein_coding
description:
  SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: RPE_1640
symbol: RPE_1640
gene_biotype: protein_coding
description:
  TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: rpc:RPC_1610 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: RPE_1642
symbol: RPE_1642
gene_biotype: protein_coding
description:
  PFAM: ribulose-phosphate 3-epimerase; KEGG: rpd:RPD_1771 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: RPE_1643
symbol: RPE_1643
gene_biotype: protein_coding
description:
  Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; KEGG: rpc:RPC_1615 calcium-binding EF-hand.


ensembl_gene_id: RPE_1645
symbol: RPE_1645
gene_biotype: protein_coding
description:
  PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rpc:RPC_1617 cytochrome c biogenesis protein, transmembrane region.


ensembl_gene_id: RPE_1646
symbol: RPE_1646
gene_biotype: protein_coding
description:
  PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpa:RPA3811 excinuclease ABC, C subunit, N-terminal.


ensembl_gene_id: RPE_1647
symbol: RPE_1647
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1618 extracellular ligand-binding receptor.


ensembl_gene_id: RPE_1650
symbol: RPE_1650
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpc:RPC_1621 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_1651
symbol: RPE_1651
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_1779 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_1653
symbol: RPE_1653
gene_biotype: protein_coding
description:
  TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1629 3-oxoadipate enol-lactonase.


ensembl_gene_id: RPE_1656
symbol: RPE_1656
gene_biotype: protein_coding
description:
  PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpc:RPC_1632 molybdopterin dehydrogenase, FAD-binding.


ensembl_gene_id: RPE_1657
symbol: RPE_1657
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_1633 ATPase associated with various cellular activities, AAA_5.


ensembl_gene_id: RPE_1659
symbol: RPE_1659
gene_biotype: protein_coding
description:
  Predicted sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis; PFAM: protein of unknown function DUF182; KEGG: rpa:RPA3799 DUF182.


ensembl_gene_id: RPE_1660
symbol: RPE_1660
gene_biotype: protein_coding
description:
  Predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis; KEGG: rpa:RPA3798 xanthine dehydrogenase accessory factor.


ensembl_gene_id: RPE_1661
symbol: RPE_1661
gene_biotype: protein_coding
description:
  Molybdenum cofactor cytidylyltransferase / molybdopterin molybdochelatase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: rpc:RPC_1637 4-diphosphocytidyl-2C-methyl-D-erythritol synthase.


ensembl_gene_id: RPE_1666
symbol: RPE_1666
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_3668 putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_1667
symbol: RPE_1667
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA3789 putative ATP-binding component of a transport system.


ensembl_gene_id: RPE_1674
symbol: RPE_1674
gene_biotype: protein_coding
description:
  Dolichyl-phosphate beta-D-mannosyltransferase; PFAM: glycosyl transferase, family 2; GtrA family protein; KEGG: rpc:RPC_1645 dolichyl-phosphate beta-D-mannosyltransferase.


ensembl_gene_id: RPE_1676
symbol: RPE_1676
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_1647 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: RPE_1678
symbol: RPE_1678
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpd:RPD_1806 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: RPE_1680
symbol: RPE_1680
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_1650 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_1681
symbol: RPE_1681
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: rpc:RPC_1651 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_1682
symbol: RPE_1682
gene_biotype: protein_coding
description:
  D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_1652 D-amino-acid dehydrogenase.


ensembl_gene_id: RPE_1687
symbol: RPE_1687
gene_biotype: protein_coding
description:
  OsmC family protein; PFAM: alpha/beta hydrolase fold; OsmC family protein; KEGG: rpc:RPC_1673 OsmC-like protein.


ensembl_gene_id: RPE_1688
symbol: RPE_1688
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase, molybdopterin binding; KEGG: rpc:RPC_1672 oxidoreductase, molybdopterin binding.


ensembl_gene_id: RPE_1689
symbol: RPE_1689
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpc:RPC_1669 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.


ensembl_gene_id: RPE_1691
symbol: RPE_1691
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_1667 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_1692
symbol: RPE_1692
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1445; KEGG: rpc:RPC_1666 protein of unknown function DUF1445; Belongs to the D-glutamate cyclase family.


ensembl_gene_id: RPE_1693
symbol: RPE_1693
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1665 extracellular ligand-binding receptor.


ensembl_gene_id: RPE_1694
symbol: RPE_1694
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpc:RPC_1664 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_1695
symbol: RPE_1695
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: rpd:RPD_1849 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RPE_1698
symbol: RPE_1698
gene_biotype: protein_coding
description:
  PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nha:Nham_0101 excinuclease ABC, C subunit-like.


ensembl_gene_id: RPE_1699
symbol: RPE_1699
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rpd:RPD_1855 hydroxypyruvate isomerase; Belongs to the hyi family.


ensembl_gene_id: RPE_1702
symbol: RPE_1702
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_1861 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_1706
symbol: RPE_1706
gene_biotype: protein_coding
description:
  Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.


ensembl_gene_id: RPE_1708
symbol: RPE_1708
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: rpc:RPC_4073 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.


ensembl_gene_id: RPE_1709
symbol: ndvA
gene_biotype: protein_coding
description:
  ABC transporter related; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: RPE_1710
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: RPE_1711
symbol: nuoB1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: RPE_1712
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: RPE_1713
symbol: RPE_1713
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rpc:RPC_4068 NADH dehydrogenase (ubiquinone), 24 kDa subunit.


ensembl_gene_id: RPE_1714
symbol: RPE_1714
gene_biotype: protein_coding
description:
  PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rpc:RPC_4067 NADH dehydrogenase (quinone).


ensembl_gene_id: RPE_1715
symbol: RPE_1715
gene_biotype: protein_coding
description:
  TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpc:RPC_4066 NADH-quinone oxidoreductase, chain G.


ensembl_gene_id: RPE_1716
symbol: nuoH1
gene_biotype: protein_coding
description:
  Respiratory-chain NADH dehydrogenase, subunit 1; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: RPE_1717
symbol: nuoI1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: RPE_1718
symbol: RPE_1718
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: RPE_1719
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase, chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: RPE_1720
symbol: RPE_1720
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4061 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: RPE_1721
symbol: RPE_1721
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4060 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: RPE_1722
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: RPE_1723
symbol: RPE_1723
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_1360 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase.


ensembl_gene_id: RPE_1724
symbol: RPE_1724
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpc:RPC_4055 transcriptional regulator, Crp/Fnr family.


ensembl_gene_id: RPE_1725
symbol: RPE_1725
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_4054 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_1726
symbol: RPE_1726
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rpb:RPB_1363 two component transcriptional regulator, LuxR family.


ensembl_gene_id: RPE_1727
symbol: RPE_1727
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_4052 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_1728
symbol: RPE_1728
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; transport-associated; KEGG: rpc:RPC_4051 putative signal-transduction protein with CBS domains.


ensembl_gene_id: RPE_1731
symbol: RPE_1731
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_4048 poly-beta-hydroxybutyrate polymerase-like.


ensembl_gene_id: RPE_1734
symbol: RPE_1734
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: rpc:RPC_4045 GCN5-related N-acetyltransferase.


ensembl_gene_id: RPE_1737
symbol: RPE_1737
gene_biotype: protein_coding
description:
  Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; protein of unknown function DUF140; KEGG: rpc:RPC_4043 protein of unknown function DUF140.


ensembl_gene_id: RPE_1741
symbol: RPE_1741
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpc:RPC_4039 transcriptional regulator, Crp/Fnr family.


ensembl_gene_id: RPE_1742
symbol: RPE_1742
gene_biotype: protein_coding
description:
  PFAM: cyclic nucleotide-binding; Ion transport protein; Ion transport 2 domain protein,; KEGG: rpc:RPC_4038 cyclic nucleotide-binding domain (cNMP-BD) protein.


ensembl_gene_id: RPE_1747
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: RPE_1749
symbol: RPE_1749
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpc:RPC_4030 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_1751
symbol: RPE_1751
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_4028 response regulator receiver (CheY-like) and unknown domain protein.


ensembl_gene_id: RPE_1757
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: RPE_1758
symbol: RPE_1758
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1396 sulfate ABC transporter, permease protein CysW.


ensembl_gene_id: RPE_1759
symbol: RPE_1759
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: RPE_1760
symbol: RPE_1760
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_1378 thiosulphate-binding protein.


ensembl_gene_id: RPE_1761
symbol: cysC-2
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.


ensembl_gene_id: RPE_1762
symbol: RPE_1762
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase subunit 2; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: rpc:RPC_4016 phosphoadenosine phosphosulfate reductase.


ensembl_gene_id: RPE_1763
symbol: RPE_1763
gene_biotype: protein_coding
description:
  uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.


ensembl_gene_id: RPE_1765
symbol: RPE_1765
gene_biotype: protein_coding
description:
  PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rpc:RPC_4013 nitrite and sulphite reductase 4Fe-4S region.


ensembl_gene_id: RPE_1766
symbol: RPE_1766
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised conserved protein UCP030820; KEGG: rpc:RPC_4012 uncharacterised conserved protein UCP030820.


ensembl_gene_id: RPE_1768
symbol: RPE_1768
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rpc:RPC_4010 thiosulphate-binding protein.


ensembl_gene_id: RPE_1770
symbol: RPE_1770
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_4008 sulfate ABC transporter, permease protein CysW.


ensembl_gene_id: RPE_1771
symbol: cysA
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: RPE_1773
symbol: RPE_1773
gene_biotype: protein_coding
description:
  TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_4002 3-hydroxybutyrate dehydrogenase.


ensembl_gene_id: RPE_1778
symbol: RPE_1778
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpa:RPA0992 probable transcriptional regulator, Crp/Fnr family.


ensembl_gene_id: RPE_1779
symbol: RPE_1779
gene_biotype: protein_coding
description:
  PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpd:RPD_1719 peptidase C14, caspase catalytic subunit P20.


ensembl_gene_id: RPE_1781
symbol: RPE_1781
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_3599 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_1782
symbol: RPE_1782
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpb:RPB_3598 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RPE_1784
symbol: RPE_1784
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_1679 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_1786
symbol: RPE_1786
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: rpc:RPC_1681 multi-sensor hybrid histidine kinase.


ensembl_gene_id: RPE_1789
symbol: RPE_1789
gene_biotype: protein_coding
description:
  KEGG: bja:bll4192 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region.


ensembl_gene_id: RPE_1791
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.


ensembl_gene_id: RPE_1793
symbol: RPE_1793
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpd:RPD_1878 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_1801
symbol: RPE_1801
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpd:RPD_3594 thiamine pyrophosphate enzyme-like TPP-binding; Belongs to the TPP enzyme family.


ensembl_gene_id: RPE_1802
symbol: RPE_1802
gene_biotype: protein_coding
description:
  PFAM: HpcH/HpaI aldolase; KEGG: rpa:RPA3755 putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: RPE_1804
symbol: RPE_1804
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_1709 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_1805
symbol: RPE_1805
gene_biotype: protein_coding
description:
  Ethanolamine ammonia-lyase heavy chain; PFAM: Ethanolamine ammonia lyase large subunit; KEGG: rpc:RPC_1711 ethanolamine ammonia lyase large subunit.


ensembl_gene_id: RPE_1806
symbol: RPE_1806
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_1712 radical SAM.


ensembl_gene_id: RPE_1807
symbol: eutC
gene_biotype: protein_coding
description:
  PFAM: Ethanolamine ammonia-lyase light chain; KEGG: rpc:RPC_1713 ethanolamine ammonia-lyase; Belongs to the EutC family.


ensembl_gene_id: RPE_1816
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: RPE_1819
symbol: RPE_1819
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: rpc:RPC_1728 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RPE_1820
symbol: RPE_1820
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rpb:RPB_1733 glucose-methanol-choline oxidoreductase.


ensembl_gene_id: RPE_1821
symbol: RPE_1821
gene_biotype: protein_coding
description:
  Amidohydrolase; KEGG: rpc:RPC_1729 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: RPE_1823
symbol: RPE_1823
gene_biotype: protein_coding
description:
  TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rpd:RPD_1899 phage SPO1 DNA polymerase-related protein.


ensembl_gene_id: RPE_1827
symbol: dnaE2
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: RPE_1830
symbol: RPE_1830
gene_biotype: protein_coding
description:
  Putative transcriptional regulators, CopG/Arc/MetJ family; TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A3537 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.


ensembl_gene_id: RPE_1834
symbol: RPE_1834
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1734 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: RPE_1836
symbol: RPE_1836
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_1738 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RPE_1839
symbol: RPE_1839
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_1745 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_1840
symbol: RPE_1840
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3549 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_1843
symbol: RPE_1843
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_1748 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_1845
symbol: RPE_1845
gene_biotype: protein_coding
description:
  Peptidase C15, pyroglutamyl peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.


ensembl_gene_id: RPE_1846
symbol: RPE_1846
gene_biotype: protein_coding
description:
  TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: rpc:RPC_1754 LAO/AO transport system ATPase.


ensembl_gene_id: RPE_1849
symbol: RPE_1849
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase, beta domain protein region; KEGG: rpc:RPC_1757 DNA polymerase, beta-like region.


ensembl_gene_id: RPE_1852
symbol: RPE_1852
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1760 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; Methylmalonyl-CoA mutase-like; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.


ensembl_gene_id: RPE_1853
symbol: RPE_1853
gene_biotype: protein_coding
description:
  PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rpc:RPC_1761 glutathione-dependent formaldehyde-activating, GFA.


ensembl_gene_id: RPE_1855
symbol: RPE_1855
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1763 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK.


ensembl_gene_id: RPE_1856
symbol: RPE_1856
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: RPE_1857
symbol: RPE_1857
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: RPE_1860
symbol: RPE_1860
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: rpa:RPA1843 hypothetical protein.


ensembl_gene_id: RPE_1862
symbol: RPE_1862
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_2457 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_1863
symbol: RPE_1863
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: rpb:RPB_3522 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_1870
symbol: RPE_1870
gene_biotype: protein_coding
description:
  Cysteine desulfuration protein SufE; PFAM: Fe-S metabolism associated SufE; KEGG: rpc:RPC_1777 Fe-S metabolism associated SufE.


ensembl_gene_id: RPE_1872
symbol: RPE_1872
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1779 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_1880
symbol: RPE_1880
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1787 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.


ensembl_gene_id: RPE_1881
symbol: RPE_1881
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0153; KEGG: bja:blr3103 hypothetical protein; Belongs to the UPF0260 family.


ensembl_gene_id: RPE_1883
symbol: RPE_1883
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_1795 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_1884
symbol: RPE_1884
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_3379 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_1887
symbol: RPE_1887
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: rpc:RPC_1252 transcriptional regulator, AraC family.


ensembl_gene_id: RPE_1894
symbol: RPE_1894
gene_biotype: protein_coding
description:
  PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpd:RPD_1965 excinuclease ABC, C subunit-like.


ensembl_gene_id: RPE_1895
symbol: RPE_1895
gene_biotype: protein_coding
description:
  TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rpc:RPC_1801 phage portal protein, HK97.


ensembl_gene_id: RPE_1898
symbol: RPE_1898
gene_biotype: protein_coding
description:
  Prohead peptidase. Unknown type peptidase. MEROPS family U35; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: rpb:RPB_3484 peptidase U35, phage prohead HK97.


ensembl_gene_id: RPE_1908
symbol: RPE_1908
gene_biotype: protein_coding
description:
  TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: nwi:Nwi_1167 phage major capsid protein, HK97.


ensembl_gene_id: RPE_1913
symbol: RPE_1913
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: rpc:RPC_1812 peptidase S1 and S6, chymotrypsin/Hap.


ensembl_gene_id: RPE_1917
symbol: RPE_1917
gene_biotype: protein_coding
description:
  TIGRFAM: phage major tail protein, TP901-1 family; KEGG: rpc:RPC_1816 phage major tail protein, TP901-1.


ensembl_gene_id: RPE_1923
symbol: RPE_1923
gene_biotype: protein_coding
description:
  TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: rpc:RPC_1823 putative phage cell wall peptidase, NlpC/P60.


ensembl_gene_id: RPE_1928
symbol: RPE_1928
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_1830 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_1929
symbol: RPE_1929
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1831 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_1933
symbol: ccmE
gene_biotype: protein_coding
description:
  CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: RPE_1934
symbol: RPE_1934
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: rpc:RPC_1836 cytochrome c-type biogenesis protein CcmF.


ensembl_gene_id: RPE_1936
symbol: RPE_1936
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rpc:RPC_3502 cobalamin synthesis protein, P47K.


ensembl_gene_id: RPE_1939
symbol: RPE_1939
gene_biotype: protein_coding
description:
  TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rpc:RPC_1841 peptidase S1C, Do; Belongs to the peptidase S1C family.


ensembl_gene_id: RPE_1940
symbol: RPE_1940
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpb:RPB_3442 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_1941
symbol: RPE_1941
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_1843 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_1942
symbol: RPE_1942
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_1844 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_1943
symbol: RPE_1943
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1845 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_1944
symbol: glnE
gene_biotype: protein_coding
description:
  (Glutamate--ammonia-ligase) adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal tra [...]


ensembl_gene_id: RPE_1946
symbol: RPE_1946
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpd:RPD_1910 sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_1948
symbol: RPE_1948
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF692; KEGG: sme:SMb20529 hypothetical protein; Belongs to the UPF0276 family.


ensembl_gene_id: RPE_1951
symbol: RPE_1951
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1847 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: RPE_1952
symbol: RPE_1952
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpd:RPD_2019 cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: RPE_1953
symbol: RPE_1953
gene_biotype: protein_coding
description:
  PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpd:RPD_2022 5-carboxymethyl-2-hydroxymuconate delta-isomerase.


ensembl_gene_id: RPE_1954
symbol: RPE_1954
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_2023 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein.


ensembl_gene_id: RPE_1955
symbol: RPE_1955
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF112, transmembrane; KEGG: rpc:RPC_1851 protein of unknown function DUF112, transmembrane.


ensembl_gene_id: RPE_1958
symbol: frc
gene_biotype: protein_coding
description:
  L-carnitine dehydratase/bile acid-inducible protein F; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate (By similarity); Belongs to the CoA-transferase III family. Frc subfamily.


ensembl_gene_id: RPE_1959
symbol: RPE_1959
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rpd:RPD_2028 GntR-like.


ensembl_gene_id: RPE_1960
symbol: kup1
gene_biotype: protein_coding
description:
  K+ potassium transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: RPE_1964
symbol: RPE_1964
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4311 two component transcriptional regulator, winged helix family.


ensembl_gene_id: RPE_1965
symbol: RPE_1965
gene_biotype: protein_coding
description:
  Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_4310 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_1967
symbol: RPE_1967
gene_biotype: protein_coding
description:
  PFAM: histone family protein DNA-binding protein; KEGG: bja:blr4404 histone-like protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: RPE_1968
symbol: RPE_1968
gene_biotype: protein_coding
description:
  TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: rpc:RPC_1949 cobalt ABC transporter CbiQ, permease subunit.


ensembl_gene_id: RPE_1970
symbol: RPE_1970
gene_biotype: protein_coding
description:
  PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rpc:RPC_1951 cobalamin (vitamin B12) biosynthesis CbiM protein.


ensembl_gene_id: RPE_1972
symbol: RPE_1972
gene_biotype: protein_coding
description:
  Transcriptional regulator, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.


ensembl_gene_id: RPE_1976
symbol: dusA
gene_biotype: protein_coding
description:
  TIM-barrel protein, yjbN family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.


ensembl_gene_id: RPE_1978
symbol: RPE_1978
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_2064 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_1979
symbol: RPE_1979
gene_biotype: protein_coding
description:
  3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpa:RPA1973 3-hydroxyisobutyrate dehydrogenase.


ensembl_gene_id: RPE_1980
symbol: RPE_1980
gene_biotype: protein_coding
description:
  MRP-like protein (ATP/GTP-binding protein); Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: RPE_1982
symbol: RPE_1982
gene_biotype: protein_coding
description:
  PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_2071 TRAP dicarboxylate transporter-DctM subunit.


ensembl_gene_id: RPE_1983
symbol: RPE_1983
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rpc:RPC_2072 tripartite ATP-independent periplasmic transporter, DctQ component.


ensembl_gene_id: RPE_1984
symbol: moaA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: RPE_1986
symbol: cbbZ
gene_biotype: protein_coding
description:
  Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.


ensembl_gene_id: RPE_1987
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: RPE_1991
symbol: RPE_1991
gene_biotype: protein_coding
description:
  3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; KEGG: rpc:RPC_2080 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II.


ensembl_gene_id: RPE_1992
symbol: RPE_1992
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: RPE_1993
symbol: nadE-2
gene_biotype: protein_coding
description:
  NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: RPE_1994
symbol: vapC
gene_biotype: protein_coding
description:
  PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: RPE_1998
symbol: cysS
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_2065 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: RPE_2001
symbol: RPE_2001
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family; PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_2088 GCN5-related N-acetyltransferase.


ensembl_gene_id: RPE_2002
symbol: RPE_2002
gene_biotype: protein_coding
description:
  TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rpc:RPC_2089 2-isopropylmalate synthase/homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: RPE_2004
symbol: RPE_2004
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpd:RPD_2070 thiamine pyrophosphate enzyme-like TPP-binding.


ensembl_gene_id: RPE_2006
symbol: RPE_2006
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein 730; KEGG: rpc:RPC_2093 conserved hypothetical protein 730; Belongs to the LOG family.


ensembl_gene_id: RPE_2007
symbol: RPE_2007
gene_biotype: protein_coding
description:
  PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_2094 ABC transporter related.


ensembl_gene_id: RPE_2008
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: RPE_2009
symbol: RPE_2009
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2096 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; outer membrane TOM13 domain protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: RPE_2014
symbol: RPE_2014
gene_biotype: protein_coding
description:
  PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: rpc:RPC_2104 aminotransferase, class I and II.


ensembl_gene_id: RPE_2015
symbol: RPE_2015
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein, family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.


ensembl_gene_id: RPE_2018
symbol: RPE_2018
gene_biotype: protein_coding
description:
  PFAM: lipid A biosynthesis acyltransferase; KEGG: rpc:RPC_2106 lipid A biosynthesis acyltransferase.


ensembl_gene_id: RPE_2019
symbol: RPE_2019
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_2107 alcohol dehydrogenase, zinc-binding.


ensembl_gene_id: RPE_2020
symbol: RPE_2020
gene_biotype: protein_coding
description:
  PFAM: beta-ketoacyl synthase; KEGG: rpc:RPC_2108 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: RPE_2021
symbol: RPE_2021
gene_biotype: protein_coding
description:
  PFAM: beta-ketoacyl synthase; KEGG: rpd:RPD_2088 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: RPE_2022
symbol: RPE_2022
gene_biotype: protein_coding
description:
  PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: rpc:RPC_2110 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ.


ensembl_gene_id: RPE_2026
symbol: RPE_2026
gene_biotype: protein_coding
description:
  Uncharacterized peroxidase-related enzyme; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: RPE_2028
symbol: RPE_2028
gene_biotype: protein_coding
description:
  Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rpb:RPB_1903 gluconolactonase precursor.


ensembl_gene_id: RPE_2031
symbol: RPE_2031
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_2122 ATPase associated with various cellular activities, AAA_5.


ensembl_gene_id: RPE_2032
symbol: RPE_2032
gene_biotype: protein_coding
description:
  Diguanylate cyclase with PAS/PAC sensor; KEGG: rpd:RPD_3460 GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: RPE_2035
symbol: RPE_2035
gene_biotype: protein_coding
description:
  3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: rpa:RPA3613 putative thiosulfate sulfurtransferase.


ensembl_gene_id: RPE_2039
symbol: RPE_2039
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA3609 ABC transporter, ATPase component.


ensembl_gene_id: RPE_2041
symbol: RPE_2041
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: rpc:RPC_2133 transcriptional regulator, AbrB family.


ensembl_gene_id: RPE_2044
symbol: tam
gene_biotype: protein_coding
description:
  Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.


ensembl_gene_id: RPE_2047
symbol: RPE_2047
gene_biotype: protein_coding
description:
  TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_2140 lytic murein transglycosylase.


ensembl_gene_id: RPE_2048
symbol: RPE_2048
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1925 phosphonate uptake transporter.


ensembl_gene_id: RPE_2049
symbol: RPE_2049
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1926 phosphonate uptake transporter.


ensembl_gene_id: RPE_2050
symbol: phnC1
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.


ensembl_gene_id: RPE_2051
symbol: RPE_2051
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rpb:RPB_1928 phosphonate-binding periplasmic protein.


ensembl_gene_id: RPE_2054
symbol: RPE_2054
gene_biotype: protein_coding
description:
  PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_2143 BFD-like (2Fe-2S)-binding region.


ensembl_gene_id: RPE_2055
symbol: RPE_2055
gene_biotype: protein_coding
description:
  Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: RPE_2056
symbol: RPE_2056
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: rpc:RPC_2149 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_2062
symbol: RPE_2062
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; Hemerythrin HHE cation binding domain protein; KEGG: rpa:RPA1642 putative diguanylate cyclase (GGDEF).


ensembl_gene_id: RPE_2069
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: RPE_2070
symbol: RPE_2070
gene_biotype: protein_coding
description:
  Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).


ensembl_gene_id: RPE_2071
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: RPE_2072
symbol: RPE_2072
gene_biotype: protein_coding
description:
  TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rpb:RPB_1957 thiamine biosynthesis protein ThiS.


ensembl_gene_id: RPE_2075
symbol: RPE_2075
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_2168 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: RPE_2077
symbol: RPE_2077
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_2170 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_2078
symbol: RPE_2078
gene_biotype: protein_coding
description:
  ErfK/YbiS/YcfS/YnhG family protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpd:RPD_3424 ErfK/YbiS/YcfS/YnhG.


ensembl_gene_id: RPE_2080
symbol: RPE_2080
gene_biotype: protein_coding
description:
  Amidohydrolase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bja:bll5570 hypothetical protein.


ensembl_gene_id: RPE_2081
symbol: RPE_2081
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_4895 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_2083
symbol: RPE_2083
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_4893 alcohol dehydrogenase GroES-like.


ensembl_gene_id: RPE_2086
symbol: RPE_2086
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: bja:blr4813 hypothetical protein.


ensembl_gene_id: RPE_2093
symbol: RPE_2093
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_2181 drug resistance transporter EmrB/QacA subfamily.


ensembl_gene_id: RPE_2095
symbol: RPE_2095
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_4299 TonB-dependent receptor.


ensembl_gene_id: RPE_2097
symbol: RPE_2097
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ade:Adeh_2267 transcriptional regulator, AraC family.


ensembl_gene_id: RPE_2098
symbol: RPE_2098
gene_biotype: protein_coding
description:
  PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: rpc:RPC_2185 negative regulator of AmpC, AmpD.


ensembl_gene_id: RPE_2099
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: RPE_2101
symbol: RPE_2101
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rpc:RPC_2188 peptidoglycan glycosyltransferase.


ensembl_gene_id: RPE_2102
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: RPE_2103
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: RPE_2104
symbol: mraY
gene_biotype: protein_coding
description:
  Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: RPE_2105
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: RPE_2106
symbol: RPE_2106
gene_biotype: protein_coding
description:
  TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rpc:RPC_3307 cell cycle protein; Belongs to the SEDS family.


ensembl_gene_id: RPE_2107
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: RPE_2114
symbol: ftsQ
gene_biotype: protein_coding
description:
  Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.


ensembl_gene_id: RPE_2115
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: RPE_2116
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: RPE_2117
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: RPE_2118
symbol: bamD
gene_biotype: protein_coding
description:
  Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: RPE_2120
symbol: RPE_2120
gene_biotype: protein_coding
description:
  PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpd:RPD_3382 excinuclease ABC, C subunit-like.


ensembl_gene_id: RPE_2121
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: RPE_2122
symbol: RPE_2122
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_3292 drug resistance transporter Bcr/CflA subfamily.


ensembl_gene_id: RPE_2125
symbol: RPE_2125
gene_biotype: protein_coding
description:
  LSU ribosomal protein L11P methyltransferase; PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: rpc:RPC_3290 ribosomal L11 methyltransferase.


ensembl_gene_id: RPE_2126
symbol: RPE_2126
gene_biotype: protein_coding
description:
  PFAM: filamentation induced by cAMP protein Fic; KEGG: rpc:RPC_3396 filamentation induced by cAMP protein Fic.


ensembl_gene_id: RPE_2137
symbol: RPE_2137
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; KEGG: rpb:RPB_2023 UvrD/REP helicase.


ensembl_gene_id: RPE_2144
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: RPE_2146
symbol: RPE_2146
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1468; KEGG: rpb:RPB_2033 TctB subunit of the tripartite tricarboxylate transport(TTT) family.


ensembl_gene_id: RPE_2147
symbol: RPE_2147
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF112, transmembrane; KEGG: rpc:RPC_3268 protein of unknown function DUF112, transmembrane.


ensembl_gene_id: RPE_2150
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: RPE_2164
symbol: RPE_2164
gene_biotype: protein_coding
description:
  PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: noc:Noc_0063 type III restriction enzyme, res subunit.


ensembl_gene_id: RPE_2167
symbol: RPE_2167
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ava:Ava_3253 DEAD/DEAH box helicase-like.


ensembl_gene_id: RPE_2172
symbol: RPE_2172
gene_biotype: protein_coding
description:
  PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mag:amb1687 ATP-dependent Zn protease; Belongs to the AAA ATPase family.


ensembl_gene_id: RPE_2177
symbol: RPE_2177
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: RPE_2181
symbol: RPE_2181
gene_biotype: protein_coding
description:
  TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rpc:RPC_3259 peptidase S1C, Do; Belongs to the peptidase S1C family.


ensembl_gene_id: RPE_2185
symbol: RPE_2185
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_3347 phosphoserine phosphatase SerB:HAD-superfamily hydrolase subfamily IB, PSPase-like; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: RPE_2186
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: RPE_2187
symbol: RPE_2187
gene_biotype: protein_coding
description:
  TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpa:RPA2031 acetolactate synthase (large subunit).


ensembl_gene_id: RPE_2188
symbol: RPE_2188
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpc:RPC_3254 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: RPE_2189
symbol: RPE_2189
gene_biotype: protein_coding
description:
  TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: rpc:RPC_3253 acetolactate synthase, small subunit.


ensembl_gene_id: RPE_2191
symbol: RPE_2191
gene_biotype: protein_coding
description:
  Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: rpc:RPC_3251 transcriptional regulator/antitoxin, MazE.


ensembl_gene_id: RPE_2192
symbol: RPE_2192
gene_biotype: protein_coding
description:
  Transcriptional modulator of MazE/toxin, MazF; PFAM: PemK family protein; KEGG: gka:GK1648 ppGpp-regulated growth inhibitor (ChpA/MazF).


ensembl_gene_id: RPE_2195
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: RPE_2196
symbol: RPE_2196
gene_biotype: protein_coding
description:
  PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll7569 probable O-methyltransferase.


ensembl_gene_id: RPE_2197
symbol: RPE_2197
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3247 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_2201
symbol: RPE_2201
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rpc:RPC_3244 substrate-binding region of ABC-type glycine betaine transport system.


ensembl_gene_id: RPE_2206
symbol: RPE_2206
gene_biotype: protein_coding
description:
  Polyphosphate:AMP phosphotransferase; PFAM: protein of unknown function DUF344; KEGG: rpc:RPC_3238 protein of unknown function DUF344.


ensembl_gene_id: RPE_2207
symbol: RPE_2207
gene_biotype: protein_coding
description:
  Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: nmu:Nmul_A0985 transcriptional regulator/antitoxin, MazE.


ensembl_gene_id: RPE_2208
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: RPE_2209
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: RPE_2210
symbol: RPE_2210
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpa:RPA2047 TrapT family, DctP subunit, C4-dicarboxylate periplasmic binding protein.


ensembl_gene_id: RPE_2211
symbol: RPE_2211
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rpd:RPD_2114 tripartite ATP-independent periplasmic transporter, DctQ component.


ensembl_gene_id: RPE_2212
symbol: RPE_2212
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpd:RPD_2115 TRAP dicarboxylate transporter-DctM subunit.


ensembl_gene_id: RPE_2217
symbol: RPE_2217
gene_biotype: protein_coding
description:
  TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpc:RPC_1880 uroporphyrin-III C-methyltransferase.


ensembl_gene_id: RPE_2218
symbol: cobB
gene_biotype: protein_coding
description:
  Hydrogenobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: RPE_2219
symbol: RPE_2219
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_2314 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: RPE_2221
symbol: RPE_2221
gene_biotype: protein_coding
description:
  KEGG: rpb:RPB_3182 precorrin-6y C5,15-methyltransferase, subunit CbiE; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Methyltransferase type 12.


ensembl_gene_id: RPE_2222
symbol: RPE_2222
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_1885 precorrin-6x reductase; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK.


ensembl_gene_id: RPE_2223
symbol: RPE_2223
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpc:RPC_1886 precorrin-3B C17-methyltransferase.


ensembl_gene_id: RPE_2224
symbol: RPE_2224
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpc:RPC_1887 precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: RPE_2228
symbol: RPE_2228
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin 3B synthase CobZ; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rpc:RPC_1893 precorrin 3B synthase CobZ.


ensembl_gene_id: RPE_2229
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: RPE_2230
symbol: RPE_2230
gene_biotype: protein_coding
description:
  precorrin-6A synthase (deacetylating); Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.


ensembl_gene_id: RPE_2232
symbol: RPE_2232
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_0641 Cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase.


ensembl_gene_id: RPE_2234
symbol: RPE_2234
gene_biotype: protein_coding
description:
  Adenosylcobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.


ensembl_gene_id: RPE_2235
symbol: RPE_2235
gene_biotype: protein_coding
description:
  TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rpd:RPD_0637 cobalamin (vitamin B12) biosynthesis CobW.


ensembl_gene_id: RPE_2236
symbol: RPE_2236
gene_biotype: protein_coding
description:
  Hydrogenobyrinic acid a,c-diamide cobaltochelatase; KEGG: rpd:RPD_0636 cobaltochelatase, CobN subunit; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase.


ensembl_gene_id: RPE_2237
symbol: RPE_2237
gene_biotype: protein_coding
description:
  cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.


ensembl_gene_id: RPE_2238
symbol: cobQ
gene_biotype: protein_coding
description:
  Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: RPE_2239
symbol: cobD
gene_biotype: protein_coding
description:
  Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: RPE_2246
symbol: RPE_2246
gene_biotype: protein_coding
description:
  Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_3208 periplasmic sensor hybrid histidine kinase.


ensembl_gene_id: RPE_2248
symbol: RPE_2248
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_3267 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_2249
symbol: RPE_2249
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_3266 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_2250
symbol: RPE_2250
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpd:RPD_2200 glutathione S-transferase-like.


ensembl_gene_id: RPE_2251
symbol: RPE_2251
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rpc:RPC_3204 transcriptional regulator, AraC family.


ensembl_gene_id: RPE_2254
symbol: RPE_2254
gene_biotype: protein_coding
description:
  Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rpc:RPC_3201 propionyl-CoA carboxylase.


ensembl_gene_id: RPE_2255
symbol: RPE_2255
gene_biotype: protein_coding
description:
  PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpd:RPD_2205 carbamoyl-phosphate synthase L chain, ATP-binding.


ensembl_gene_id: RPE_2259
symbol: RPE_2259
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_3194 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: RPE_2261
symbol: RPE_2261
gene_biotype: protein_coding
description:
  Dihydroxyacid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpd:RPD_2216 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: RPE_2262
symbol: cowN
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Is required to sustain N(2)-dependent growth in the presence of low levels of carbon monoxide (CO). Probably acts by protecting the N(2) fixation ability of the nitrogenase complex, which is inactivated in the presence of CO.


ensembl_gene_id: RPE_2271
symbol: RPE_2271
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_2222 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_2272
symbol: RPE_2272
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: rpd:RPD_2223 regulatory protein, ArsR.


ensembl_gene_id: RPE_2275
symbol: RPE_2275
gene_biotype: protein_coding
description:
  PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20.


ensembl_gene_id: RPE_2279
symbol: RPE_2279
gene_biotype: protein_coding
description:
  PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_3180 excinuclease ABC, C subunit-like.


ensembl_gene_id: RPE_2280
symbol: RPE_2280
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2940 methyltransferase type 11.


ensembl_gene_id: RPE_2288
symbol: RPE_2288
gene_biotype: protein_coding
description:
  PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: rpc:RPC_3167 Na+ dependent nucleoside transporter-like.


ensembl_gene_id: RPE_2289
symbol: RPE_2289
gene_biotype: protein_coding
description:
  Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_3798 multi-sensor hybrid histidine kinase.


ensembl_gene_id: RPE_2291
symbol: RPE_2291
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3165 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_2295
symbol: RPE_2295
gene_biotype: protein_coding
description:
  PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_3159 transglutaminase-like.


ensembl_gene_id: RPE_2297
symbol: RPE_2297
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpc:RPC_3157 protein of unknown function DUF404.


ensembl_gene_id: RPE_2299
symbol: gpt
gene_biotype: protein_coding
description:
  Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.


ensembl_gene_id: RPE_2301
symbol: RPE_2301
gene_biotype: protein_coding
description:
  PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin-independent synthase MetE, N-terminal domain protein; KEGG: rpc:RPC_3153 methionine synthase, vitamin-B12 independent.


ensembl_gene_id: RPE_2302
symbol: RPE_2302
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rpa:RPA2182 putative glutathione S-transferase; Belongs to the GST superfamily.


ensembl_gene_id: RPE_2304
symbol: RPE_2304
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_2248 alcohol dehydrogenase, zinc-binding.


ensembl_gene_id: RPE_2305
symbol: RPE_2305
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA3441 enoyl-CoA hydratase/isomerase family protein.


ensembl_gene_id: RPE_2307
symbol: RPE_2307
gene_biotype: protein_coding
description:
  Salicylate 1-monooxygenase; PFAM: monooxygenase, FAD-binding; KEGG: rpc:RPC_3149 monooxygenase, FAD-binding.


ensembl_gene_id: RPE_2312
symbol: RPE_2312
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3144 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein.


ensembl_gene_id: RPE_2319
symbol: RPE_2319
gene_biotype: protein_coding
description:
  Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.


ensembl_gene_id: RPE_2324
symbol: RPE_2324
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; KEGG: bja:blr1062 transcriptional regulatory protein.


ensembl_gene_id: RPE_2325
symbol: RPE_2325
gene_biotype: protein_coding
description:
  PFAM: transglutaminase family protein cysteine peptidase, BTLCP; KEGG: rpc:RPC_3134 transglutaminase-like cysteine peptidase, BTLCP.


ensembl_gene_id: RPE_2328
symbol: RPE_2328
gene_biotype: protein_coding
description:
  PFAM: cyclic nucleotide-binding; KEGG: rpc:RPC_3375 cyclic nucleotide-binding domain (cNMP-BD) protein.


ensembl_gene_id: RPE_2331
symbol: RPE_2331
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; KEGG: rpc:RPC_3128 putative signal-transduction protein with CBS domains.


ensembl_gene_id: RPE_2334
symbol: RPE_2334
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_3125 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_2337
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: RPE_2339
symbol: RPE_2339
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll5536 major facilitator superfamily transporter.


ensembl_gene_id: RPE_2343
symbol: RPE_2343
gene_biotype: protein_coding
description:
  Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: RPE_2349
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: RPE_2351
symbol: RPE_2351
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like.


ensembl_gene_id: RPE_2357
symbol: RPE_2357
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_3108 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_2358
symbol: RPE_2358
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpb:RPB_4125 diguanylate cyclase.


ensembl_gene_id: RPE_2359
symbol: nadK
gene_biotype: protein_coding
description:
  NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: RPE_2360
symbol: RPE_2360
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5512 hypothetical protein.


ensembl_gene_id: RPE_2362
symbol: RPE_2362
gene_biotype: protein_coding
description:
  PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: rpc:RPC_3103 OmpA-like transmembrane region.


ensembl_gene_id: RPE_2363
symbol: RPE_2363
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpa:RPA3399 cold shock DNA binding protein.


ensembl_gene_id: RPE_2367
symbol: RPE_2367
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF303, acetylesterase putative; KEGG: ret:RHE_CH02651 hypothetical protein.


ensembl_gene_id: RPE_2372
symbol: RPE_2372
gene_biotype: protein_coding
description:
  PFAM: Thiolase; KEGG: rpc:RPC_3100 thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RPE_2373
symbol: RPE_2373
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA3465 putative long-chain-fatty-acid CoA ligase.


ensembl_gene_id: RPE_2376
symbol: RPE_2376
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_2983 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: RPE_2378
symbol: RPE_2378
gene_biotype: protein_coding
description:
  PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bja:bsl3938 putative biotinylated protein.


ensembl_gene_id: RPE_2380
symbol: RPE_2380
gene_biotype: protein_coding
description:
  Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rpc:RPC_3097 propionyl-CoA carboxylase.


ensembl_gene_id: RPE_2382
symbol: RPE_2382
gene_biotype: protein_coding
description:
  TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_3095 methylmalonate-semialdehyde dehydrogenase.


ensembl_gene_id: RPE_2385
symbol: RPE_2385
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_2120 acyl-CoA dehydrogenase-like.


ensembl_gene_id: RPE_2387
symbol: RPE_2387
gene_biotype: protein_coding
description:
  TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpa:RPA3446 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.


ensembl_gene_id: RPE_2390
symbol: RPE_2390
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3088 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_2391
symbol: RPE_2391
gene_biotype: protein_coding
description:
  PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_3087 HI0933-like protein.


ensembl_gene_id: RPE_2393
symbol: RPE_2393
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF188; KEGG: rpd:RPD_2254 protein of unknown function DUF188; Belongs to the UPF0178 family.


ensembl_gene_id: RPE_2394
symbol: RPE_2394
gene_biotype: protein_coding
description:
  TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.


ensembl_gene_id: RPE_2397
symbol: RPE_2397
gene_biotype: protein_coding
description:
  Glutathione peroxidase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: glutathione peroxidase; KEGG: bja:bll4149 putative glutathione peroxidase; Belongs to the glutathione peroxidase family.


ensembl_gene_id: RPE_2404
symbol: RPE_2404
gene_biotype: protein_coding
description:
  TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rpa:RPA3032 phenylacetic acid degradation-related protein.


ensembl_gene_id: RPE_2409
symbol: RPE_2409
gene_biotype: protein_coding
description:
  PFAM: Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: rpc:RPC_2358 Sel1.


ensembl_gene_id: RPE_2415
symbol: RPE_2415
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: rpa:RPA2292 sensor histidine kinase.


ensembl_gene_id: RPE_2417
symbol: RPE_2417
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sme:SMc04167 putative histidine-rich transporter transmembrane protein.


ensembl_gene_id: RPE_2442
symbol: RPE_2442
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_CH00634 hypothetical protein.


ensembl_gene_id: RPE_2448
symbol: RPE_2448
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpb:RPB_2543 DEAD/DEAH box helicase.


ensembl_gene_id: RPE_2452
symbol: RPE_2452
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; KEGG: rpc:RPC_1734 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).


ensembl_gene_id: RPE_2454
symbol: RPE_2454
gene_biotype: protein_coding
description:
  PFAM: BLUF domain protein; KEGG: rpa:RPA3367 possible activator of photopigment and puc with BLUF domain.


ensembl_gene_id: RPE_2460
symbol: RPE_2460
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpa:RPA3219 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL).


ensembl_gene_id: RPE_2469
symbol: RPE_2469
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_2342 AAA ATPase, central region.


ensembl_gene_id: RPE_2471
symbol: RPE_2471
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bja:bll0070 hypothetical protein.


ensembl_gene_id: RPE_2473
symbol: RPE_2473
gene_biotype: protein_coding
description:
  KEGG: bja:bll0068 exonuclease I; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease.


ensembl_gene_id: RPE_2484
symbol: RPE_2484
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: rpd:RPD_3368 ATP-binding region, ATPase-like.


ensembl_gene_id: RPE_2485
symbol: RPE_2485
gene_biotype: protein_coding
description:
  PFAM: peptidase M41; AAA ATPase, central domain protein; KEGG: mag:amb1687 ATP-dependent Zn protease; Belongs to the AAA ATPase family.


ensembl_gene_id: RPE_2495
symbol: RPE_2495
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: gka:GK2254 DNA-directed RNA polymerase ECF-type sigma factor (sigma-X).


ensembl_gene_id: RPE_2500
symbol: RPE_2500
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; peptidase C14, caspase catalytic subunit p20; KEGG: sat:SYN_01854 helicase.


ensembl_gene_id: RPE_2501
symbol: RPE_2501
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: RPE_2502
symbol: RPE_2502
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_2383 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: RPE_2505
symbol: RPE_2505
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2386 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp.


ensembl_gene_id: RPE_2506
symbol: RPE_2506
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: rpc:RPC_2387 nitrogen regulatory protein P-II (GlnB, GlnK); Belongs to the P(II) protein family.


ensembl_gene_id: RPE_2507
symbol: nnrD
gene_biotype: protein_coding
description:
  Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]


ensembl_gene_id: RPE_2508
symbol: RPE_2508
gene_biotype: protein_coding
description:
  Multicopper oxidase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; KEGG: rpc:RPC_2390 twin-arginine translocation pathway signal.


ensembl_gene_id: RPE_2509
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: RPE_2510
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: RPE_2511
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: RPE_2512
symbol: lon
gene_biotype: protein_coding
description:
  Lon-A peptidase. Serine peptidase. MEROPS family S16; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: RPE_2514
symbol: RPE_2514
gene_biotype: protein_coding
description:
  TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rpb:RPB_2567 hydrophobe/amphiphile efflux-1 HAE1.


ensembl_gene_id: RPE_2515
symbol: RPE_2515
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpb:RPB_2568 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_2516
symbol: RPE_2516
gene_biotype: protein_coding
description:
  Peptidase T. Metallo peptidase. MEROPS family M20B; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: RPE_2517
symbol: RPE_2517
gene_biotype: protein_coding
description:
  PFAM: histone family protein DNA-binding protein; KEGG: rpb:RPB_2570 histone-like DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: RPE_2518
symbol: RPE_2518
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5623 TPR domain protein.


ensembl_gene_id: RPE_2521
symbol: nuoC-2
gene_biotype: protein_coding
description:
  NADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: RPE_2523
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: RPE_2525
symbol: RPE_2525
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2406 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit.


ensembl_gene_id: RPE_2527
symbol: RPE_2527
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: RPE_2529
symbol: RPE_2529
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: RPE_2532
symbol: RPE_2532
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: RPE_2534
symbol: RPE_2534
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2415 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: RPE_2535
symbol: RPE_2535
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2416 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: RPE_2536
symbol: nuoN-2
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: RPE_2537
symbol: RPE_2537
gene_biotype: protein_coding
description:
  TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: rpc:RPC_2418 biotin--acetyl-CoA-carboxylase ligase.


ensembl_gene_id: RPE_2538
symbol: RPE_2538
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rpc:RPC_2419 beta-lactamase-like.


ensembl_gene_id: RPE_2539
symbol: RPE_2539
gene_biotype: protein_coding
description:
  methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpa:RPA2934 hypothetical protein.


ensembl_gene_id: RPE_2544
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.


ensembl_gene_id: RPE_2545
symbol: RPE_2545
gene_biotype: protein_coding
description:
  TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rpc:RPC_2428 lipoprotein releasing system, transmembrane protein, LolC/E family.


ensembl_gene_id: RPE_2546
symbol: lolD
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.


ensembl_gene_id: RPE_2550
symbol: RPE_2550
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2433 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein.


ensembl_gene_id: RPE_2553
symbol: rpsB
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S2; KEGG: rpc:RPC_2436 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: RPE_2554
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: RPE_2556
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: RPE_2557
symbol: RPE_2557
gene_biotype: protein_coding
description:
  Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: RPE_2558
symbol: RPE_2558
gene_biotype: protein_coding
description:
  PFAM: phosphatidate cytidylyltransferase; KEGG: rpc:RPC_2441 phosphatidate cytidylyltransferase; Belongs to the CDS family.


ensembl_gene_id: RPE_2559
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: RPE_2560
symbol: RPE_2560
gene_biotype: protein_coding
description:
  RseP peptidase. Metallo peptidase. MEROPS family M50B; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: rpc:RPC_2443 peptidase M50, putative membrane-associated zinc metallopeptidase.


ensembl_gene_id: RPE_2561
symbol: bamA
gene_biotype: protein_coding
description:
  Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: RPE_2562
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: RPE_2563
symbol: fabZ
gene_biotype: protein_coding
description:
  3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: RPE_2564
symbol: RPE_2564
gene_biotype: protein_coding
description:
  acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: RPE_2566
symbol: lpxB
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: RPE_2567
symbol: RPE_2567
gene_biotype: protein_coding
description:
  KEGG: rpa:RPA2907 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.


ensembl_gene_id: RPE_2568
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: RPE_2569
symbol: glnS
gene_biotype: protein_coding
description:
  KEGG: rpd:RPD_2841 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic.


ensembl_gene_id: RPE_2571
symbol: lexA
gene_biotype: protein_coding
description:
  SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: RPE_2572
symbol: RPE_2572
gene_biotype: protein_coding
description:
  Molybdopterin molybdochelatase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: RPE_2575
symbol: RPE_2575
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: bja:blr1253 dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_2580
symbol: RPE_2580
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_1951 hypothetical protein.


ensembl_gene_id: RPE_2582
symbol: RPE_2582
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_2458 HAD-superfamily hydrolase subfamily IA, variant 3.


ensembl_gene_id: RPE_2585
symbol: RPE_2585
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_2461 ATPase, E1-E2 type.


ensembl_gene_id: RPE_2586
symbol: RPE_2586
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: rpc:RPC_2462 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: RPE_2589
symbol: moaC
gene_biotype: protein_coding
description:
  GTP cyclohydrolase subunit MoaC; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: RPE_2590
symbol: trpC
gene_biotype: protein_coding
description:
  PFAM: Indole-3-glycerol phosphate synthase; KEGG: rpc:RPC_2466 indole-3-glycerol-phosphate synthase; Belongs to the TrpC family.


ensembl_gene_id: RPE_2591
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: RPE_2592
symbol: RPE_2592
gene_biotype: protein_coding
description:
  PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpc:RPC_2468 PpiC-type peptidyl-prolyl cis-trans isomerase.


ensembl_gene_id: RPE_2593
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: RPE_2594
symbol: RPE_2594
gene_biotype: protein_coding
description:
  Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: RPE_2595
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: RPE_2601
symbol: kdsA
gene_biotype: protein_coding
description:
  TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: rpc:RPC_2477 2-dehydro-3-deoxyphosphooctonate aldolase.


ensembl_gene_id: RPE_2602
symbol: RPE_2602
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rpc:RPC_1006 glutamate synthase (NADPH), homotetrameric.


ensembl_gene_id: RPE_2603
symbol: RPE_2603
gene_biotype: protein_coding
description:
  Putative GAF sensor protein; TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; GAF domain protein; KEGG: rpc:RPC_2479 putative GAF sensor protein.


ensembl_gene_id: RPE_2605
symbol: RPE_2605
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rpc:RPC_2481 glucose-methanol-choline oxidoreductase.


ensembl_gene_id: RPE_2606
symbol: queF
gene_biotype: protein_coding
description:
  GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: RPE_2607
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: RPE_2610
symbol: RPE_2610
gene_biotype: protein_coding
description:
  PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rpc:RPC_2487 NADPH-dependent FMN reductase.


ensembl_gene_id: RPE_2612
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: RPE_2614
symbol: RPE_2614
gene_biotype: protein_coding
description:
  Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.


ensembl_gene_id: RPE_2616
symbol: RPE_2616
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: RPE_2618
symbol: RPE_2618
gene_biotype: protein_coding
description:
  TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: rpd:RPD_2807 dihydrolipoamide dehydrogenase.


ensembl_gene_id: RPE_2622
symbol: RPE_2622
gene_biotype: protein_coding
description:
  TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpd:RPD_2804 exodeoxyribonuclease III.


ensembl_gene_id: RPE_2623
symbol: RPE_2623
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_2497 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_2624
symbol: RPE_2624
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2498 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_2629
symbol: RPE_2629
gene_biotype: protein_coding
description:
  TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpd:RPD_2797 HesB/YadR/YfhF; Belongs to the HesB/IscA family.


ensembl_gene_id: RPE_2630
symbol: RPE_2630
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2507 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: RPE_2635
symbol: RPE_2635
gene_biotype: protein_coding
description:
  PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: rpc:RPC_2888 NADH:ubiquinone oxidoreductase 17.2 kD subunit.


ensembl_gene_id: RPE_2637
symbol: RPE_2637
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3128 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_2639
symbol: RPE_2639
gene_biotype: protein_coding
description:
  TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: rpb:RPB_3126 filamentous haemagglutinin-like protein.


ensembl_gene_id: RPE_2641
symbol: RPE_2641
gene_biotype: protein_coding
description:
  PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: gox:GOX1577 ATP-dependent Clp protease ATP-binding subunit ClpA.


ensembl_gene_id: RPE_2646
symbol: RPE_2646
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2212 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_2648
symbol: RPE_2648
gene_biotype: protein_coding
description:
  TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: rpc:RPC_2911 filamentous haemagglutinin-like.


ensembl_gene_id: RPE_2652
symbol: RPE_2652
gene_biotype: protein_coding
description:
  TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bur:Bcep18194_B1068 haemagglutinin-like.


ensembl_gene_id: RPE_2657
symbol: RPE_2657
gene_biotype: protein_coding
description:
  TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rpc:RPC_2997 filamentous haemagglutinin-like.


ensembl_gene_id: RPE_2658
symbol: RPE_2658
gene_biotype: protein_coding
description:
  TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: rpc:RPC_3004 putative general secretion pathway protein J.


ensembl_gene_id: RPE_2661
symbol: RPE_2661
gene_biotype: protein_coding
description:
  TIGRFAM: general secretion pathway protein G; PFAM: secretion system protein G; KEGG: bja:bll6019 probable general secretion pathway protein G precursor.


ensembl_gene_id: RPE_2662
symbol: RPE_2662
gene_biotype: protein_coding
description:
  PFAM: type II secretion system protein; KEGG: bja:bll6020 probable general secretion pathway protein F.


ensembl_gene_id: RPE_2663
symbol: RPE_2663
gene_biotype: protein_coding
description:
  PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: bja:bll6021 general secretion pathway protein E.


ensembl_gene_id: RPE_2666
symbol: RPE_2666
gene_biotype: protein_coding
description:
  PFAM: Fimbrial assembly family protein; KEGG: bja:bll6015 putative general secretory pathway protein L.


ensembl_gene_id: RPE_2669
symbol: RPE_2669
gene_biotype: protein_coding
description:
  TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rpc:RPC_3010 type II and III secretion system protein.


ensembl_gene_id: RPE_2670
symbol: RPE_2670
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4 type 2; KEGG: rpb:RPB_2205 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_2671
symbol: RPE_2671
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.


ensembl_gene_id: RPE_2672
symbol: RPE_2672
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5623 TPR domain protein.


ensembl_gene_id: RPE_2674
symbol: RPE_2674
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: rpa:RPA0173 putative sugar nucleotide dehydratase.


ensembl_gene_id: RPE_2678
symbol: RPE_2678
gene_biotype: protein_coding
description:
  Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rpc:RPC_2929 arginase; Belongs to the arginase family.


ensembl_gene_id: RPE_2682
symbol: fbp
gene_biotype: protein_coding
description:
  PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: rpc:RPC_2899 inositol phosphatase/fructose-1,6-bisphosphatase.


ensembl_gene_id: RPE_2684
symbol: RPE_2684
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: RPE_2685
symbol: RPE_2685
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: RPE_2686
symbol: cbbM
gene_biotype: protein_coding
description:
  Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.


ensembl_gene_id: RPE_2687
symbol: RPE_2687
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_2894 HAD-superfamily hydrolase subfamily IA, variant 3.


ensembl_gene_id: RPE_2693
symbol: RPE_2693
gene_biotype: protein_coding
description:
  Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rpb:RPB_2748 beta-N-acetylhexosaminidase.


ensembl_gene_id: RPE_2694
symbol: RPE_2694
gene_biotype: protein_coding
description:
  Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: RPE_2695
symbol: RPE_2695
gene_biotype: protein_coding
description:
  Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: RPE_2696
symbol: tatA
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: RPE_2697
symbol: tatB
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: RPE_2698
symbol: tatC
gene_biotype: protein_coding
description:
  Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: RPE_2700
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: RPE_2703
symbol: surE
gene_biotype: protein_coding
description:
  Exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: RPE_2704
symbol: RPE_2704
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_2520 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_2705
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: RPE_2706
symbol: RPE_2706
gene_biotype: protein_coding
description:
  Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: rpc:RPC_2522 peptidase M23B.


ensembl_gene_id: RPE_2708
symbol: RPE_2708
gene_biotype: protein_coding
description:
  PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rpc:RPC_2524 transcriptional coactivator/pterin dehydratase.


ensembl_gene_id: RPE_2709
symbol: RPE_2709
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rpc:RPC_2525 TRAP transporter solute receptor, TAXI family.


ensembl_gene_id: RPE_2710
symbol: RPE_2710
gene_biotype: protein_coding
description:
  TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: rpb:RPB_0103 GTPase.


ensembl_gene_id: RPE_2719
symbol: RPE_2719
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3128 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RPE_2722
symbol: RPE_2722
gene_biotype: protein_coding
description:
  PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: rpc:RPC_2542 alpha-2-macroglobulin-like.


ensembl_gene_id: RPE_2723
symbol: RPE_2723
gene_biotype: protein_coding
description:
  TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; Penicillin-binding domain protein; KEGG: rpa:RPA2554 penicillin binding protein.


ensembl_gene_id: RPE_2725
symbol: RPE_2725
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase, PA-phosphatase related; KEGG: rpc:RPC_2545 phosphoesterase, PA-phosphatase related.


ensembl_gene_id: RPE_2728
symbol: RPE_2728
gene_biotype: protein_coding
description:
  TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rpc:RPC_2548 cystathionine beta-lyase.


ensembl_gene_id: RPE_2729
symbol: RPE_2729
gene_biotype: protein_coding
description:
  TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_2549 lysine-arginine-ornithine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: RPE_2730
symbol: RPE_2730
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_2550 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.


ensembl_gene_id: RPE_2731
symbol: RPE_2731
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_2551 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.


ensembl_gene_id: RPE_2734
symbol: RPE_2734
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpb:RPB_2907 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: RPE_2735
symbol: RPE_2735
gene_biotype: protein_coding
description:
  PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2554 cyclopropane-fatty-acyl-phospholipid synthase.


ensembl_gene_id: RPE_2739
symbol: RPE_2739
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rpc:RPC_2557 RND efflux system, outer membrane lipoprotein, NodT.


ensembl_gene_id: RPE_2740
symbol: RPE_2740
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_2558 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RPE_2741
symbol: RPE_2741
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2559 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_2742
symbol: RPE_2742
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2560 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RPE_2747
symbol: RPE_2747
gene_biotype: protein_coding
description:
  PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2567 protein-L-isoaspartate(D-aspartate) O-methyltransferase.


ensembl_gene_id: RPE_2748
symbol: RPE_2748
gene_biotype: protein_coding
description:
  TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rpc:RPC_2568 type I secretion outer membrane protein, TolC.


ensembl_gene_id: RPE_2750
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: RPE_2751
symbol: RPE_2751
gene_biotype: protein_coding
description:
  TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: rpc:RPC_2571 DNA-3-methyladenine glycosylase; Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: RPE_2752
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: RPE_2755
symbol: ispDF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF); In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.


ensembl_gene_id: RPE_2756
symbol: RPE_2756
gene_biotype: protein_coding
description:
  Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: RPE_2757
symbol: RPE_2757
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rpc:RPC_2577 signal transduction histidine kinase, nitrogen specific, NtrB.


ensembl_gene_id: RPE_2758
symbol: ntrC
gene_biotype: protein_coding
description:
  Nitrogen metabolism transcriptional regulator, NtrC, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: RPE_2759
symbol: RPE_2759
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2579 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: RPE_2760
symbol: RPE_2760
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: rpc:RPC_2580 two component, sigma54 specific, transcriptional regulator, fis family.


ensembl_gene_id: RPE_2761
symbol: RPE_2761
gene_biotype: protein_coding
description:
  Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase; PFAM: aminotransferase, class IV; KEGG: rpc:RPC_2581 aminotransferase, class IV.


ensembl_gene_id: RPE_2762
symbol: hfq
gene_biotype: protein_coding
description:
  RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: RPE_2763
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein, HSR1-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: RPE_2764
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: RPE_2766
symbol: coaD
gene_biotype: protein_coding
description:
  Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: RPE_2767
symbol: RPE_2767
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: RPE_2770
symbol: queA
gene_biotype: protein_coding
description:
  Queuosine biosynthesis protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: RPE_2771
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: RPE_2774
symbol: RPE_2774
gene_biotype: protein_coding
description:
  TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpc:RPC_2594 cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: RPE_2781
symbol: RPE_2781
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_2601 hypothetical protein.


ensembl_gene_id: RPE_2785
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the t [...]


ensembl_gene_id: RPE_2786
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: RPE_2788
symbol: RPE_2788
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_2608 DEAD/DEAH box helicase-like.


ensembl_gene_id: RPE_2790
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: RPE_2793
symbol: RPE_2793
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_2613 extracellular solute-binding protein, family 5.


ensembl_gene_id: RPE_2797
symbol: RPE_2797
gene_biotype: protein_coding
description:
  TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rpc:RPC_2617 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family.


ensembl_gene_id: RPE_2798
symbol: RPE_2798
gene_biotype: protein_coding
description:
  CDP-diacylglycerol-choline O-phosphatidyltransferase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: RPE_2800
symbol: RPE_2800
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_2619 alcohol dehydrogenase, zinc-binding.


ensembl_gene_id: RPE_2807
symbol: RPE_2807
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: bja:blr1253 dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RPE_2808
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: RPE_2809
symbol: nrdR
gene_biotype: protein_coding
description:
  Ribonucleotide reductase regulator NrdR-like protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: RPE_2810
symbol: RPE_2810
gene_biotype: protein_coding
description:
  Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: RPE_2813
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: RPE_2814
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: RPE_2815
symbol: hppA
gene_biotype: protein_coding
description:
  V-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: RPE_2818
symbol: RPE_2818
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bja:bll6183 hypothetical protein.


ensembl_gene_id: RPE_2819
symbol: RPE_2819
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, glucose-6-phosphate specific; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: bja:bll6184 two-component sensor histidine kinase.


ensembl_gene_id: RPE_2820
symbol: RPE_2820
gene_biotype: protein_coding
description:
  PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bja:blr6185 two-component response regulator.


ensembl_gene_id: RPE_2821
symbol: RPE_2821
gene_biotype: protein_coding
description:
  Dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein; KEGG: bja:bll3470 hypothetical protein.


ensembl_gene_id: RPE_2825
symbol: plsX
gene_biotype: protein_coding
description:
  Phosphate:acyl-[acyl carrier protein] acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: RPE_2826
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: RPE_2827
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: RPE_2835
symbol: RPE_2835
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: bja:bll2244 probable cAMP-regulatory protein.


ensembl_gene_id: RPE_2839
symbol: RPE_2839
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO3365 zinc/manganese/iron ABC transporter, ATP-binding protein.


ensembl_gene_id: RPE_2840
symbol: RPE_2840
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: sil:SPO3366 zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding protein; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: RPE_2849
symbol: ctaA
gene_biotype: protein_coding
description:
  Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.


ensembl_gene_id: RPE_2851
symbol: crcB
gene_biotype: protein_coding
description:
  Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: RPE_2853
symbol: RPE_2853
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2691 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase.


ensembl_gene_id: RPE_2856
symbol: RPE_2856
gene_biotype: protein_coding
description:
  TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_2695 phenylacetic acid degradation-related protein.


ensembl_gene_id: RPE_2857
symbol: rplM
gene_biotype: protein_coding
description:
  LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: RPE_2858
symbol: rpsI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S9; KEGG: rpb:RPB_2672 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: RPE_2859
symbol: RPE_2859
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_2698 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_2860
symbol: RPE_2860
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpc:RPC_2699 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: RPE_2864
symbol: RPE_2864
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rpc:RPC_2702 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.


ensembl_gene_id: RPE_2865
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: RPE_2866
symbol: RPE_2866
gene_biotype: protein_coding
description:
  DNA polymerase III, delta prime subunit; KEGG: rpc:RPC_2704 ATPase involved in DNA replication-like.


ensembl_gene_id: RPE_2867
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.


ensembl_gene_id: RPE_2868
symbol: RPE_2868
gene_biotype: protein_coding
description:
  TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rpa:RPA2778 possible deoxyribonuclease.


ensembl_gene_id: RPE_2871
symbol: RPE_2871
gene_biotype: protein_coding
description:
  KEGG: sil:SPO2657 ACC deaminase/D-cysteine desulfhydrase family; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: RPE_2872
symbol: RPE_2872
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_0969 major facilitator family transporter.


ensembl_gene_id: RPE_2875
symbol: RPE_2875
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpb:RPB_2685 TrapT DctQ-M fusion permease, dicarboxylate transport.


ensembl_gene_id: RPE_2876
symbol: RPE_2876
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpb:RPB_2686 TRAP dicarboxylate transporter DctP subunit.


ensembl_gene_id: RPE_2878
symbol: RPE_2878
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_2740 transcriptional regulator, LysR family.


ensembl_gene_id: RPE_2879
symbol: RPE_2879
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_2742 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_2880
symbol: RPE_2880
gene_biotype: protein_coding
description:
  PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_2744 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: RPE_2884
symbol: queC
gene_biotype: protein_coding
description:
  exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: RPE_2885
symbol: RPE_2885
gene_biotype: protein_coding
description:
  TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: rpc:RPC_2752 MazG family protein.


ensembl_gene_id: RPE_2886
symbol: RPE_2886
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rpb:RPB_2711 hypothetical protein.


ensembl_gene_id: RPE_2888
symbol: RPE_2888
gene_biotype: protein_coding
description:
  Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: RPE_2890
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: RPE_2903
symbol: trmFO
gene_biotype: protein_coding
description:
  Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: RPE_2906
symbol: secF
gene_biotype: protein_coding
description:
  Protein translocase subunit secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: RPE_2907
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: RPE_2908
symbol: yajC
gene_biotype: protein_coding
description:
  Protein translocase subunit yajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: RPE_2910
symbol: RPE_2910
gene_biotype: protein_coding
description:
  hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; KEGG: rpc:RPC_2780 pyruvate carboxyltransferase.


ensembl_gene_id: RPE_2911
symbol: RPE_2911
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase L chain, ATP-binding protein; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpc:RPC_2781 carbamoyl-phosphate synthase L chain, ATP-binding.


ensembl_gene_id: RPE_2912
symbol: RPE_2912
gene_biotype: protein_coding
description:
  Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rpc:RPC_2782 propionyl-CoA carboxylase.


ensembl_gene_id: RPE_2913
symbol: RPE_2913
gene_biotype: protein_coding
description:
  PFAM: ETC complex I subunit conserved region; KEGG: rpb:RPB_2935 ETC complex I subunit conserved region.


ensembl_gene_id: RPE_2915
symbol: RPE_2915
gene_biotype: protein_coding
description:
  Tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rpd:RPD_3423 tryptophanase.


ensembl_gene_id: RPE_2918
symbol: RPE_2918
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpc:RPC_2791 cold-shock DNA-binding domain protein.


ensembl_gene_id: RPE_2919
symbol: cobB-2
gene_biotype: protein_coding
description:
  Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.


ensembl_gene_id: RPE_2920
symbol: RPE_2920
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpc:RPC_2794 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: RPE_2928
symbol: RPE_2928
gene_biotype: protein_coding
description:
  TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: rpc:RPC_2807 protein of unknown function DUF160.


ensembl_gene_id: RPE_2930
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: RPE_2932
symbol: RPE_2932
gene_biotype: protein_coding
description:
  TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_2811 lytic murein transglycosylase.


ensembl_gene_id: RPE_2934
symbol: RPE_2934
gene_biotype: protein_coding
description:
  Exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: rpc:RPC_2813 single-stranded-DNA-specific exonuclease RecJ.


ensembl_gene_id: RPE_2935
symbol: RPE_2935
gene_biotype: protein_coding
description:
  TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:blr4364 putative haloacid dehalogenase.


ensembl_gene_id: RPE_2936
symbol: RPE_2936
gene_biotype: protein_coding
description:
  TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: rpc:RPC_2815 fructose-1,6-bisphosphatase, class II.


ensembl_gene_id: RPE_2937
symbol: RPE_2937
gene_biotype: protein_coding
description:
  PFAM: dihydrodipicolinate reductase; homoserine dehydrogenase; homoserine dehydrogenase, NAD-binding; KEGG: rpc:RPC_2816 homoserine dehydrogenase.


ensembl_gene_id: RPE_2940
symbol: RPE_2940
gene_biotype: protein_coding
description:
  TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_2819 poly(R)-hydroxyalkanoic acid synthase, class I.


ensembl_gene_id: RPE_2941
symbol: RPE_2941
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: bja:bll5864 hypothetical protein.


ensembl_gene_id: RPE_2944
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: RPE_2946
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: RPE_2957
symbol: RPE_2957
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpa:RPA1816 putative outer membrane receptor for iron transport.


ensembl_gene_id: RPE_2959
symbol: RPE_2959
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_2833 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.


ensembl_gene_id: RPE_2960
symbol: RPE_2960
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_2834 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: RPE_2962
symbol: RPE_2962
gene_biotype: protein_coding
description:
  TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nwi:Nwi_1659 HesB/YadR/YfhF; Belongs to the HesB/IscA family.


ensembl_gene_id: RPE_2964
symbol: RPE_2964
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: RPE_2965
symbol: RPE_2965
gene_biotype: protein_coding
description:
  Iron-regulated ABC transporter permease protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: rpc:RPC_2838 FeS assembly protein SufD.


ensembl_gene_id: RPE_2966
symbol: RPE_2966
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2839 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: RPE_2968
symbol: RPE_2968
gene_biotype: protein_coding
description:
  Iron-regulated ABC transporter membrane component SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: rpc:RPC_2841 FeS assembly protein SufB.


ensembl_gene_id: RPE_2969
symbol: RPE_2969
gene_biotype: protein_coding
description:
  PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rpc:RPC_2842 aminotransferase, class V.


ensembl_gene_id: RPE_2971
symbol: anmK
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: RPE_2972
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: RPE_2974
symbol: RPE_2974
gene_biotype: protein_coding
description:
  Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpb:RPB_3002 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: RPE_2976
symbol: prfB
gene_biotype: protein_coding
description:
  Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: RPE_2977
symbol: RPE_2977
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2852 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.


ensembl_gene_id: RPE_2978
symbol: RPE_2978
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: rpc:RPC_2853 N-acetylmuramoyl-L-alanine amidase.


ensembl_gene_id: RPE_2979
symbol: rne
gene_biotype: protein_coding
description:
  RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: RPE_2980
symbol: RPE_2980
gene_biotype: protein_coding
description:
  PFAM: aminotransferase, class I and II; Allinase-like; KEGG: rpc:RPC_2860 aminotransferase, class I and II.


ensembl_gene_id: RPE_2986
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: RPE_2987
symbol: RPE_2987
gene_biotype: protein_coding
description:
  Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: RPE_2988
symbol: RPE_2988
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha / biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: RPE_2989
symbol: RPE_2989
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: rpc:RPC_2870 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: RPE_2990
symbol: RPE_2990
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rpc:RPC_2871 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: RPE_2991
symbol: RPE_2991
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: rpc:RPC_2872 signal transduction histidine kinase.


ensembl_gene_id: RPE_2993
symbol: RPE_2993
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_2874 radical SAM.


ensembl_gene_id: RPE_2994
symbol: aat
gene_biotype: protein_coding
description:
  Leucyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: RPE_3000
symbol: RPE_3000
gene_biotype: protein_coding
description:
  PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: rpb:RPB_3153 adenylate/guanylate cyclase.


ensembl_gene_id: RPE_3009
symbol: RPE_3009
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: rpc:RPC_2651 porphobilinogen synthase; Belongs to the ALAD family.


ensembl_gene_id: RPE_3011
symbol: bpt
gene_biotype: protein_coding
description:
  Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: RPE_3014
symbol: RPE_3014
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: bja:bll6988 hypothetical protein.


ensembl_gene_id: RPE_3015
symbol: mntH
gene_biotype: protein_coding
description:
  Mn2+/Fe2+ transporter, NRAMP family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.


ensembl_gene_id: RPE_3017
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


