# geneInfo

ensembl_gene_id: CYB_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.


ensembl_gene_id: CYB_0004
symbol: ftsH
gene_biotype: protein_coding
description:
  Metalloprotease, ATP-dependent, FtsH family; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: CYB_0005
symbol: CYB_0005
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: CYB_0008
symbol: CYB_0008
gene_biotype: protein_coding
description:
  Type II DNA topoisomerase, A subunit; Identified by match to protein family HMM PF00521; match to protein family HMM PF03989.


ensembl_gene_id: CYB_0009
symbol: CYB_0009
gene_biotype: protein_coding
description:
  Putative drug resistance ATPase-1 (Drug RA1) ABC transporter family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_0011
symbol: CYB_0011
gene_biotype: protein_coding
description:
  Putative phosphonate ABC transporter, phosphonate-binding protein; Identified by match to protein family HMM TIGR01098.


ensembl_gene_id: CYB_0014
symbol: CYB_0014
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.


ensembl_gene_id: CYB_0018
symbol: CYB_0018
gene_biotype: protein_coding
description:
  ISSoc2, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282.


ensembl_gene_id: CYB_0019
symbol: CYB_0019
gene_biotype: protein_coding
description:
  ISSoc2, resolvase; Identified by match to protein family HMM PF00239; match to protein family HMM PF00376.


ensembl_gene_id: CYB_0020
symbol: CYB_0020
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AG1841; match to protein family HMM PF05685.


ensembl_gene_id: CYB_0021
symbol: psaB
gene_biotype: protein_coding
description:
  Photosystem I core protein PsaB; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.


ensembl_gene_id: CYB_0022
symbol: psaA
gene_biotype: protein_coding
description:
  Photosystem I core protein PsaA; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.


ensembl_gene_id: CYB_0023
symbol: ureC
gene_biotype: protein_coding
description:
  Urease, alpha subunit; Identified by similarity to SP:P73061; match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.


ensembl_gene_id: CYB_0024
symbol: CYB_0024
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CYB_0026
symbol: CYB_0026
gene_biotype: protein_coding
description:
  ISSoc2, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_0028
symbol: CYB_0028
gene_biotype: protein_coding
description:
  Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.


ensembl_gene_id: CYB_0029
symbol: CYB_0029
gene_biotype: protein_coding
description:
  Quaternary amine ABC transporter (QAT) family, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: CYB_0034
symbol: nirA
gene_biotype: protein_coding
description:
  Ferredoxin-nitrite reductase; Identified by match to protein family HMM PF01077; match to protein family HMM PF03460; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: CYB_0035
symbol: nrtA
gene_biotype: protein_coding
description:
  Nitrate ABC transporter, periplasmic nitrate-binding protein NrtA; Identified by similarity to SP:P38043; match to protein family HMM TIGR01409.


ensembl_gene_id: CYB_0036
symbol: ntrB-1
gene_biotype: protein_coding
description:
  Nitrate ABC transporter, permease protein NrtB; Identified by similarity to SP:P38044; match to protein family HMM PF00528; match to protein family HMM TIGR01183.


ensembl_gene_id: CYB_0037
symbol: ntrC-1
gene_biotype: protein_coding
description:
  Nitrate ABC transporter, ATP-binding protein NtrC; Identified by similarity to SP:P73450; match to protein family HMM PF00005; match to protein family HMM TIGR01184.


ensembl_gene_id: CYB_0038
symbol: ntrD
gene_biotype: protein_coding
description:
  Nitrate ABC transporter, ATP-binding protein NtrD; Identified by similarity to SP:P38046; match to protein family HMM PF00005; match to protein family HMM TIGR01184.


ensembl_gene_id: CYB_0039
symbol: CYB_0039
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAD70760.1; match to protein family HMM PF05685.


ensembl_gene_id: CYB_0040
symbol: narB
gene_biotype: protein_coding
description:
  Nitrate reductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.


ensembl_gene_id: CYB_0041
symbol: CYB_0041
gene_biotype: protein_coding
description:
  ISSoc1, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_0042
symbol: CYB_0042
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAD78799.1; match to protein family HMM TIGR02664.


ensembl_gene_id: CYB_0043
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family.


ensembl_gene_id: CYB_0047
symbol: rnj
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase family protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: CYB_0048
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: CYB_0050
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: CYB_0051
symbol: gid
gene_biotype: protein_coding
description:
  Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: CYB_0055
symbol: CYB_0055
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:Q8Z0I8; match to protein family HMM PF04025; Belongs to the RemA family.


ensembl_gene_id: CYB_0057
symbol: speH
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: CYB_0058
symbol: speE
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.


ensembl_gene_id: CYB_0062
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: CYB_0063
symbol: CYB_0063
gene_biotype: protein_coding
description:
  HD domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488.


ensembl_gene_id: CYB_0064
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: CYB_0065
symbol: CYB_0065
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC08349.1; match to protein family HMM PF01936.


ensembl_gene_id: CYB_0066
symbol: glyQ
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetase, alpha subunit; Identified by match to protein family HMM PF02091; match to protein family HMM TIGR00388.


ensembl_gene_id: CYB_0069
symbol: CYB_0069
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:S77173; match to protein family HMM PF04248.


ensembl_gene_id: CYB_0073
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: CYB_0076
symbol: CYB_0076
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC89235.1; match to protein family HMM PF02638.


ensembl_gene_id: CYB_0078
symbol: CYB_0078
gene_biotype: protein_coding
description:
  RNA pseudouridine synthase family protein; Identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: CYB_0079
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: CYB_0081
symbol: CYB_0081
gene_biotype: protein_coding
description:
  ISSoc8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_0082
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: CYB_0084
symbol: ccsA
gene_biotype: protein_coding
description:
  Cytochrome c assembly protein; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.


ensembl_gene_id: CYB_0088
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: CYB_0089
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: CYB_0090
symbol: folD
gene_biotype: protein_coding
description:
  FolD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: CYB_0092
symbol: CYB_0092
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase family protein; Identified by similarity to SP:Q51521; match to protein family HMM PF01243.


ensembl_gene_id: CYB_0095
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: CYB_0096
symbol: CYB_0096
gene_biotype: protein_coding
description:
  Transglycosylase, SLT family; Identified by match to protein family HMM PF01464; match to protein family HMM PF07719.


ensembl_gene_id: CYB_0097
symbol: sixA
gene_biotype: protein_coding
description:
  Phosphohistidine phosphatase SixA; Identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249.


ensembl_gene_id: CYB_0099
symbol: CYB_0099
gene_biotype: protein_coding
description:
  Peptidase S49 (protease IV) family, nonpeptidase-like protein; Identified by match to protein family HMM PF01972.


ensembl_gene_id: CYB_0102
symbol: CYB_0102
gene_biotype: protein_coding
description:
  Beta-carotene ketolase, putative; Identified by similarity to GB:AAF78203.1; match to protein family HMM PF00487.


ensembl_gene_id: CYB_0104
symbol: psbK
gene_biotype: protein_coding
description:
  Photosystem II reaction center protein PsbK; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.


ensembl_gene_id: CYB_0107
symbol: chlI
gene_biotype: protein_coding
description:
  Magnesium chelatase, ATPase subunit I; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.


ensembl_gene_id: CYB_0114
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: CYB_0115
symbol: CYB_0115
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, F subunit; Identified by similarity to SP:Q55429; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974.


ensembl_gene_id: CYB_0117
symbol: CYB_0117
gene_biotype: protein_coding
description:
  Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621.


ensembl_gene_id: CYB_0118
symbol: cobK
gene_biotype: protein_coding
description:
  Precorrin-6x reductase; Identified by match to protein family HMM PF02571; match to protein family HMM TIGR00715.


ensembl_gene_id: CYB_0119
symbol: CYB_0119
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:S77403; match to protein family HMM PF02577.


ensembl_gene_id: CYB_0120
symbol: CYB_0120
gene_biotype: protein_coding
description:
  MOSC domain protein; Identified by match to protein family HMM PF03473; match to protein family HMM PF03476.


ensembl_gene_id: CYB_0121
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: CYB_0125
symbol: grxC
gene_biotype: protein_coding
description:
  Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: CYB_0126
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: CYB_0131
symbol: icc
gene_biotype: protein_coding
description:
  Icc protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: CYB_0133
symbol: CYB_0133
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC09914.1; match to protein family HMM PF01837.


ensembl_gene_id: CYB_0136
symbol: psbU
gene_biotype: protein_coding
description:
  Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.


ensembl_gene_id: CYB_0137
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: CYB_0144
symbol: CYB_0144
gene_biotype: protein_coding
description:
  Putative zinc ABC transporter, periplasmic zinc-binding protein; Identified by similarity to PDB:1PQ4_A; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: CYB_0145
symbol: CYB_0145
gene_biotype: protein_coding
description:
  Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by similarity to SP:Q55281; match to protein family HMM PF00005.


ensembl_gene_id: CYB_0147
symbol: CYB_0147
gene_biotype: protein_coding
description:
  Manganese/zinc/iron chelate ABC transporter (MZT) family, permease protein; Identified by match to protein family HMM PF00950.


ensembl_gene_id: CYB_0148
symbol: rpmF
gene_biotype: protein_coding
description:
  Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: CYB_0151
symbol: gloB
gene_biotype: protein_coding
description:
  Glyoxalase II family protein; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: CYB_0153
symbol: CYB_0153
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAT65828.1; match to protein family HMM PF02641.


ensembl_gene_id: CYB_0154
symbol: crcB
gene_biotype: protein_coding
description:
  crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: CYB_0155
symbol: CYB_0155
gene_biotype: protein_coding
description:
  Sodium/hydrogen exchanger/universal stress family protein; Identified by match to protein family HMM PF00582; match to protein family HMM PF00999.


ensembl_gene_id: CYB_0157
symbol: hisIE
gene_biotype: protein_coding
description:
  Histidine biosynthesis bifunctional protein HisIE; Identified by match to protein family HMM PF01502; match to protein family HMM PF01503; In the N-terminal section; belongs to the PRA-CH family.


ensembl_gene_id: CYB_0159
symbol: phnC-1
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.


ensembl_gene_id: CYB_0160
symbol: phnD-1
gene_biotype: protein_coding
description:
  Phosphonate ABC tranporter, periplasmic phosphonate-binding protein; Identified by match to protein family HMM TIGR01098.


ensembl_gene_id: CYB_0161
symbol: phnE-1
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097.


ensembl_gene_id: CYB_0168
symbol: CYB_0168
gene_biotype: protein_coding
description:
  Putative phosphonate metabolism protein PhnM; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.


ensembl_gene_id: CYB_0174
symbol: CYB_0174
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: CYB_0177
symbol: CYB_0177
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: CYB_0180
symbol: sir
gene_biotype: protein_coding
description:
  Sulfite reductase, ferredoxin dependent; Identified by similarity to SP:P30008; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02042; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: CYB_0181
symbol: CYB_0181
gene_biotype: protein_coding
description:
  Peroxisomal fatty acyl CoA ABC transporter (P-FAT) family, transmembrane ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_0182
symbol: CYB_0182
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family.


ensembl_gene_id: CYB_0184
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.


ensembl_gene_id: CYB_0185
symbol: CYB_0185
gene_biotype: protein_coding
description:
  Phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130.


ensembl_gene_id: CYB_0186
symbol: apcD
gene_biotype: protein_coding
description:
  Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.


ensembl_gene_id: CYB_0187
symbol: pilT-1
gene_biotype: protein_coding
description:
  Twitching mobility protein PilT; Identified by similarity to GB:AAB30824.1; match to protein family HMM PF00437; match to protein family HMM TIGR01420.


ensembl_gene_id: CYB_0188
symbol: folE
gene_biotype: protein_coding
description:
  GTP cyclohydrolase I; Identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063.


ensembl_gene_id: CYB_0189
symbol: CYB_0189
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: CYB_0190
symbol: CYB_0190
gene_biotype: protein_coding
description:
  Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_0192
symbol: trx-1
gene_biotype: protein_coding
description:
  Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.


ensembl_gene_id: CYB_0194
symbol: trpF
gene_biotype: protein_coding
description:
  N-(5'phosphoribosyl)anthranilate isomerase; Identified by similarity to SP:Q56320; match to protein family HMM PF00697; Belongs to the TrpF family.


ensembl_gene_id: CYB_0196
symbol: CYB_0196
gene_biotype: protein_coding
description:
  RNA pseudouridine synthase family protein; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: CYB_0200
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: CYB_0202
symbol: phrB-1
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.


ensembl_gene_id: CYB_0206
symbol: moeA
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: CYB_0207
symbol: CYB_0207
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4L family; Identified by match to protein family HMM PF00420.


ensembl_gene_id: CYB_0215
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, large subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; Belongs to the CarB family.


ensembl_gene_id: CYB_0216
symbol: psbA-1
gene_biotype: protein_coding
description:
  Photosystem II protein D1; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.


ensembl_gene_id: CYB_0217
symbol: CYB_0217
gene_biotype: protein_coding
description:
  Aspartate kinase; Identified by similarity to SP:P41403; match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657.


ensembl_gene_id: CYB_0223
symbol: ubiX
gene_biotype: protein_coding
description:
  Decarboxylase, polyprenyl P-hydroxybenzoate/phenylacrylic acid family; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: CYB_0225
symbol: cobH-1
gene_biotype: protein_coding
description:
  precorrin-8X methylmutase; Identified by similarity to GB:CAA04310.1; match to protein family HMM PF02570.


ensembl_gene_id: CYB_0227
symbol: cbiE/cbiT
gene_biotype: protein_coding
description:
  precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE/T subunits; Identified by match to protein family HMM PF00590; match to protein family HMM PF05175; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.


ensembl_gene_id: CYB_0228
symbol: CYB_0228
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AH1835; match to protein family HMM PF01936.


ensembl_gene_id: CYB_0229
symbol: sfsA
gene_biotype: protein_coding
description:
  Sugar fermentation stimulation protein; Identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230; Belongs to the SfsA family.


ensembl_gene_id: CYB_0230
symbol: CYB_0230
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II domain protein; Identified by similarity to SP:P17620; match to protein family HMM PF00925.


ensembl_gene_id: CYB_0231
symbol: xth
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.


ensembl_gene_id: CYB_0232
symbol: CYB_0232
gene_biotype: protein_coding
description:
  Sigma factor, putative; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: CYB_0234
symbol: CYB_0234
gene_biotype: protein_coding
description:
  Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: CYB_0235
symbol: msrA
gene_biotype: protein_coding
description:
  methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: CYB_0236
symbol: cysW
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysW; Identified by similarity to SP:P27370; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140.


ensembl_gene_id: CYB_0237
symbol: cysT
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: CYB_0238
symbol: cysA
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: CYB_0239
symbol: sbp
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, periplasmic sulfate-binding protein; Identified by similarity to SP:P06997; match to protein family HMM PF01547; match to protein family HMM TIGR00971.


ensembl_gene_id: CYB_0240
symbol: CYB_0240
gene_biotype: protein_coding
description:
  Putative acetyl coenzyme A synthetase; Identified by match to protein family HMM PF00583; match to protein family HMM PF02629.


ensembl_gene_id: CYB_0241
symbol: CYB_0241
gene_biotype: protein_coding
description:
  Aldehyde-alcohol dehydrogenase; Identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.


ensembl_gene_id: CYB_0243
symbol: pflA
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: CYB_0245
symbol: pflB
gene_biotype: protein_coding
description:
  Formate acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255.


ensembl_gene_id: CYB_0247
symbol: CYB_0247
gene_biotype: protein_coding
description:
  ISSoc9, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_0248
symbol: CYB_0248
gene_biotype: protein_coding
description:
  Peptide/opine/nickel ABC transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CYB_0249
symbol: CYB_0249
gene_biotype: protein_coding
description:
  DNA-binding response regulator RpaA; Identified by similarity to GB:AAD30120.2; match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: CYB_0250
symbol: CYB_0250
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF02274; match to protein family HMM PF04455; match to protein family HMM TIGR00300.


ensembl_gene_id: CYB_0252
symbol: CYB_0252
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC90863.1; match to protein family HMM PF01887.


ensembl_gene_id: CYB_0253
symbol: CYB_0253
gene_biotype: protein_coding
description:
  Small heat shock protein (HSP20) family protein; Identified by similarity to SP:Q06823; match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: CYB_0260
symbol: hisC
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: CYB_0261
symbol: CYB_0261
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: CYB_0262
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: CYB_0267
symbol: CYB_0267
gene_biotype: protein_coding
description:
  NitT/TauT family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: CYB_0268
symbol: CYB_0268
gene_biotype: protein_coding
description:
  NitT/TauT family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_0270
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: CYB_0273
symbol: CYB_0273
gene_biotype: protein_coding
description:
  Putative methylated-DNA-[protein]-cysteine S-methyltransferase; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589.


ensembl_gene_id: CYB_0274
symbol: CYB_0274
gene_biotype: protein_coding
description:
  5'-nucleotidase domain/ Ser/Thr protein phosphatase family protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: CYB_0278
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.


ensembl_gene_id: CYB_0281
symbol: psbB
gene_biotype: protein_coding
description:
  Photosystem II P680 chlorophyll A apoprotein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.


ensembl_gene_id: CYB_0282
symbol: psbT
gene_biotype: protein_coding
description:
  Photosystem II reaction center protein PsbT; Seems to play a role in the dimerization of PSII. Belongs to the PsbT family.


ensembl_gene_id: CYB_0284
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: CYB_0285
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, PurS protein; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought [...]


ensembl_gene_id: CYB_0287
symbol: comB
gene_biotype: protein_coding
description:
  2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; Belongs to the ComB family.


ensembl_gene_id: CYB_0289
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: CYB_0292
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: CYB_0293
symbol: CYB_0293
gene_biotype: protein_coding
description:
  Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family.


ensembl_gene_id: CYB_0298
symbol: ndhD1
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.


ensembl_gene_id: CYB_0299
symbol: pdhA
gene_biotype: protein_coding
description:
  Dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: CYB_0301
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: CYB_0309
symbol: CYB_0309
gene_biotype: protein_coding
description:
  Carbohydrate uptake ABC transporter-2 (CUT2) family, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CYB_0310
symbol: CYB_0310
gene_biotype: protein_coding
description:
  Dolichyl-phosphate-mannose-protein mannosyltransferase; Identified by match to protein family HMM PF02366.


ensembl_gene_id: CYB_0312
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: CYB_0316
symbol: minC
gene_biotype: protein_coding
description:
  Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: CYB_0317
symbol: minD
gene_biotype: protein_coding
description:
  Septum site-determining protein MinD; Identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968.


ensembl_gene_id: CYB_0318
symbol: minE
gene_biotype: protein_coding
description:
  Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.


ensembl_gene_id: CYB_0319
symbol: CYB_0319
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AF1055; match to protein family HMM PF03674.


ensembl_gene_id: CYB_0320
symbol: CYB_0320
gene_biotype: protein_coding
description:
  Transporter, monovalent cation:proton antiporter-2 (CPA2) family; Identified by match to protein family HMM PF00999.


ensembl_gene_id: CYB_0321
symbol: plsY
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: CYB_0322
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: CYB_0323
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: CYB_0325
symbol: CYB_0325
gene_biotype: protein_coding
description:
  FAD-dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF07992.


ensembl_gene_id: CYB_0327
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: CYB_0330
symbol: CYB_0330
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase accessory factor, putative; Identified by match to protein family HMM PF02625.


ensembl_gene_id: CYB_0332
symbol: CYB_0332
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by similarity to SP:P52693; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: CYB_0334
symbol: CYB_0334
gene_biotype: protein_coding
description:
  Rho termination factor, N-terminal domain protein; Identified by match to protein family HMM PF07498.


ensembl_gene_id: CYB_0343
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: CYB_0345
symbol: CYB_0345
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00726; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: CYB_0347
symbol: CYB_0347
gene_biotype: protein_coding
description:
  GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: CYB_0348
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: CYB_0350
symbol: gpsA
gene_biotype: protein_coding
description:
  NAD-dependent glycerol-3-phosphate dehydrogenase family protein; Identified by match to protein family HMM PF01210; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: CYB_0357
symbol: fba
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: CYB_0362
symbol: cbiT
gene_biotype: protein_coding
description:
  precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR02469.


ensembl_gene_id: CYB_0364
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of 2-phytyl- 1,4-beta-naphthoquinol to phylloquinol.


ensembl_gene_id: CYB_0367
symbol: cobU
gene_biotype: protein_coding
description:
  Cobinamide kinase/cobinamide phosphate guanyltransferase; Identified by match to protein family HMM PF02283.


ensembl_gene_id: CYB_0373
symbol: CYB_0373
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC90716.1; match to protein family HMM PF04459.


ensembl_gene_id: CYB_0375
symbol: mobA
gene_biotype: protein_coding
description:
  Putative molybdopterin-guanine dinucleotide biosynthesis protein; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.


ensembl_gene_id: CYB_0381
symbol: CYB_0381
gene_biotype: protein_coding
description:
  Putative diflavin flavoprotein; Identified by match to protein family HMM PF00258; match to protein family HMM PF00753; match to protein family HMM PF01613.


ensembl_gene_id: CYB_0382
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.


ensembl_gene_id: CYB_0388
symbol: CYB_0388
gene_biotype: protein_coding
description:
  Carbohydrate ABC transporter-2 (CUT2) family, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CYB_0390
symbol: CYB_0390
gene_biotype: protein_coding
description:
  Carbohydrate uptake ABC transporter 2 (CUT2) family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_0391
symbol: CYB_0391
gene_biotype: protein_coding
description:
  Membrane protein, bmp family; Identified by match to protein family HMM PF02608; match to protein family HMM TIGR01409.


ensembl_gene_id: CYB_0393
symbol: codA
gene_biotype: protein_coding
description:
  Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969.


ensembl_gene_id: CYB_0394
symbol: CYB_0394
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: CYB_0395
symbol: CYB_0395
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by similarity to SP:P25138; match to protein family HMM PF00254.


ensembl_gene_id: CYB_0397
symbol: cbiG/cobJ
gene_biotype: protein_coding
description:
  cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.


ensembl_gene_id: CYB_0398
symbol: modB
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR02141.


ensembl_gene_id: CYB_0399
symbol: modA
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, periplasmic molybdate-binding protein; Identified by match to protein family HMM TIGR01256.


ensembl_gene_id: CYB_0401
symbol: CYB_0401
gene_biotype: protein_coding
description:
  Molybdenum-pterin binding domain protein; Identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638.


ensembl_gene_id: CYB_0402
symbol: CYB_0402
gene_biotype: protein_coding
description:
  Transcriptional regulator PatB; Identified by match to protein family HMM PF00037; match to protein family HMM PF01381.


ensembl_gene_id: CYB_0405
symbol: CYB_0405
gene_biotype: protein_coding
description:
  Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.


ensembl_gene_id: CYB_0406
symbol: nifW
gene_biotype: protein_coding
description:
  Nitrogenase stabilizing/protective protein nifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.


ensembl_gene_id: CYB_0408
symbol: CYB_0408
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AH1985; match to protein family HMM PF03270.


ensembl_gene_id: CYB_0409
symbol: nifX
gene_biotype: protein_coding
description:
  Nitrogenase cofactor biosynthesis protein NifX; Identified by match to protein family HMM PF02579; match to protein family HMM TIGR02663.


ensembl_gene_id: CYB_0410
symbol: nifN
gene_biotype: protein_coding
description:
  Nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; Identified by match to protein family HMM PF00148; match to protein family HMM TIGR01285; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: CYB_0411
symbol: nifE
gene_biotype: protein_coding
description:
  Nitrogenase MoFe cofactor biosynthesis protein NifE; Identified by match to protein family HMM PF00148; match to protein family HMM TIGR01283; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: CYB_0414
symbol: dpsA
gene_biotype: protein_coding
description:
  Nutrient-stress induced DNA binding protein; Identified by similarity to SP:Q55024; match to protein family HMM PF00210; Belongs to the Dps family.


ensembl_gene_id: CYB_0417
symbol: nifB
gene_biotype: protein_coding
description:
  Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P20627; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.


ensembl_gene_id: CYB_0419
symbol: nifS
gene_biotype: protein_coding
description:
  Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.


ensembl_gene_id: CYB_0420
symbol: nifU
gene_biotype: protein_coding
description:
  Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.


ensembl_gene_id: CYB_0421
symbol: nifH
gene_biotype: protein_coding
description:
  Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.


ensembl_gene_id: CYB_0422
symbol: nifD
gene_biotype: protein_coding
description:
  Nitrogenase molybdenum-iron protein alpha chain; Identified by similarity to SP:Q00239; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862.


ensembl_gene_id: CYB_0423
symbol: nifK
gene_biotype: protein_coding
description:
  Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: CYB_0424
symbol: nifV
gene_biotype: protein_coding
description:
  Homocitrate synthase 1; Identified by similarity to SP:Q44290; match to protein family HMM PF00682; match to protein family HMM TIGR02660; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: CYB_0431
symbol: CYB_0431
gene_biotype: protein_coding
description:
  Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.


ensembl_gene_id: CYB_0432
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: CYB_0433
symbol: psbA-3
gene_biotype: protein_coding
description:
  Photosystem II protein D1; Identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151.


ensembl_gene_id: CYB_0435
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: CYB_0436
symbol: accB
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: CYB_0438
symbol: cysH
gene_biotype: protein_coding
description:
  Phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: CYB_0439
symbol: CYB_0439
gene_biotype: protein_coding
description:
  Antibiotic biosynthesis monooxygenase domain protein; Identified by match to protein family HMM PF03992.


ensembl_gene_id: CYB_0444
symbol: cysQ
gene_biotype: protein_coding
description:
  3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.


ensembl_gene_id: CYB_0445
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: CYB_0448
symbol: rpsP
gene_biotype: protein_coding
description:
  Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: CYB_0450
symbol: CYB_0450
gene_biotype: protein_coding
description:
  Conserved domain protein; Identified by similarity to PIR:AE2150; match to protein family HMM PF02583.


ensembl_gene_id: CYB_0451
symbol: sds
gene_biotype: protein_coding
description:
  Solanesyl diphosphate synthase; Identified by match to protein family HMM PF00348; match to protein family HMM TIGR02749; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: CYB_0452
symbol: lepB
gene_biotype: protein_coding
description:
  Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.


ensembl_gene_id: CYB_0455
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: CYB_0457
symbol: CYB_0457
gene_biotype: protein_coding
description:
  biotin--acetyl-CoA-carboxylase ligase; Identified by similarity to SP:P06709; match to protein family HMM PF03099; match to protein family HMM TIGR00121.


ensembl_gene_id: CYB_0461
symbol: CYB_0461
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: CYB_0462
symbol: CYB_0462
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:CAD78920.1; match to protein family HMM PF01882.


ensembl_gene_id: CYB_0465
symbol: nadK
gene_biotype: protein_coding
description:
  NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: CYB_0468
symbol: CYB_0468
gene_biotype: protein_coding
description:
  TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.


ensembl_gene_id: CYB_0475
symbol: CYB_0475
gene_biotype: protein_coding
description:
  General secretion pathway protein G, putative; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.


ensembl_gene_id: CYB_0479
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: CYB_0481
symbol: CYB_0481
gene_biotype: protein_coding
description:
  Putative transporter, HlyC/CorC (HCC) family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.


ensembl_gene_id: CYB_0482
symbol: CYB_0482
gene_biotype: protein_coding
description:
  Orn/Lys/Arg decarboxylase; Identified by match to protein family HMM PF00155; match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01276; match to protein family HMM PF03711.


ensembl_gene_id: CYB_0484
symbol: CYB_0484
gene_biotype: protein_coding
description:
  Type IV pilus secretin PilQ, putative; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.


ensembl_gene_id: CYB_0488
symbol: kaiC
gene_biotype: protein_coding
description:
  Circadian clock protein kinase KaiC; Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction; Belongs to the KaiC family.


ensembl_gene_id: CYB_0489
symbol: kaiB
gene_biotype: protein_coding
description:
  Circadian clock protein KaiB; Identified by match to protein family HMM PF07689; match to protein family HMM TIGR02654.


ensembl_gene_id: CYB_0490
symbol: kaiA
gene_biotype: protein_coding
description:
  Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]


ensembl_gene_id: CYB_0491
symbol: CYB_0491
gene_biotype: protein_coding
description:
  Inosine-uridine preferring nucleoside hydrolase family protein; Identified by match to protein family HMM PF01156.


ensembl_gene_id: CYB_0492
symbol: pgsA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: CYB_0493
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: CYB_0500
symbol: rumA
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: CYB_0505
symbol: CYB_0505
gene_biotype: protein_coding
description:
  Polyamine transporter, periplasmic polyamine-binding protein; Identified by match to protein family HMM PF01547.


ensembl_gene_id: CYB_0507
symbol: CYB_0507
gene_biotype: protein_coding
description:
  Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.


ensembl_gene_id: CYB_0511
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: CYB_0515
symbol: CYB_0515
gene_biotype: protein_coding
description:
  3-beta hydroxysteroid dehydrogenase/isomerase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02254; match to protein family HMM PF05368; match to protein family HMM PF07993.


ensembl_gene_id: CYB_0516
symbol: CYB_0516
gene_biotype: protein_coding
description:
  Proline dehydrogenase/1-pyrroline-5 carboxylate dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM PF01619; match to protein family HMM TIGR01237; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: CYB_0519
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: CYB_0523
symbol: bcp-1
gene_biotype: protein_coding
description:
  Bacterioferritin comigratory protein; Identified by similarity to SP:P23480; match to protein family HMM PF00578.


ensembl_gene_id: CYB_0524
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: CYB_0527
symbol: CYB_0527
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC89549.1; match to protein family HMM PF05685.


ensembl_gene_id: CYB_0528
symbol: CYB_0528
gene_biotype: protein_coding
description:
  Sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792.


ensembl_gene_id: CYB_0529
symbol: CYB_0529
gene_biotype: protein_coding
description:
  ISSoc10, orfA transposase; Identified by similarity to PIR:AI2478; match to protein family HMM PF01797.


ensembl_gene_id: CYB_0530
symbol: CYB_0530
gene_biotype: protein_coding
description:
  ISSoc10, orfB transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_0533
symbol: chlG
gene_biotype: protein_coding
description:
  Chlorophyll synthase, ChlG; Identified by match to protein family HMM PF01040; match to protein family HMM TIGR01476; match to protein family HMM TIGR02056.


ensembl_gene_id: CYB_0535
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: CYB_0536
symbol: CYB_0536
gene_biotype: protein_coding
description:
  Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.


ensembl_gene_id: CYB_0539
symbol: CYB_0539
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by similarity to PIR:AH1824; match to protein family HMM PF04240.


ensembl_gene_id: CYB_0540
symbol: CYB_0540
gene_biotype: protein_coding
description:
  Putative low specificity L-threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.


ensembl_gene_id: CYB_0541
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: CYB_0546
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: CYB_0547
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: CYB_0549
symbol: psaC
gene_biotype: protein_coding
description:
  Photosystem I iron-sulfur center, subunit VII; Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characte [...]


ensembl_gene_id: CYB_0553
symbol: proA-2
gene_biotype: protein_coding
description:
  Putative gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: CYB_0556
symbol: CYB_0556
gene_biotype: protein_coding
description:
  Putative glutamate--cysteine ligase; Identified by match to protein family HMM PF04107; match to protein family HMM TIGR02048.


ensembl_gene_id: CYB_0559
symbol: CYB_0559
gene_biotype: protein_coding
description:
  Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.


ensembl_gene_id: CYB_0560
symbol: CYB_0560
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: CYB_0561
symbol: CYB_0561
gene_biotype: protein_coding
description:
  Transporter, drug:H+ antiporter-1 (12 spanner) (DHA1) family; Identified by match to protein family HMM PF07690.


ensembl_gene_id: CYB_0565
symbol: menB
gene_biotype: protein_coding
description:
  Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).


ensembl_gene_id: CYB_0566
symbol: cobA/hemD
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase; Identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: CYB_0568
symbol: CYB_0568
gene_biotype: protein_coding
description:
  Putative phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.


ensembl_gene_id: CYB_0578
symbol: CYB_0578
gene_biotype: protein_coding
description:
  Peptidase, S1C (protease Do) family; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595.


ensembl_gene_id: CYB_0579
symbol: CYB_0579
gene_biotype: protein_coding
description:
  Quaternary amine uptake ABC transporter (QAT) family, periplasmic substrate-binding protein; Identified by match to protein family HMM PF04069.


ensembl_gene_id: CYB_0580
symbol: CYB_0580
gene_biotype: protein_coding
description:
  Quaternary amine uptake ABC transporter (QAT) family, ATP-binding protein; Identified by similarity to SP:P33360; match to protein family HMM PF00005.


ensembl_gene_id: CYB_0581
symbol: CYB_0581
gene_biotype: protein_coding
description:
  Quaternary amine uptake ABC transporter (QAT) family, permease protein; Identified by similarity to GB:AAG43531.1; match to protein family HMM PF00528.


ensembl_gene_id: CYB_0582
symbol: CYB_0582
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: CYB_0585
symbol: CYB_0585
gene_biotype: protein_coding
description:
  Putative CRISPR-associated protein, APE2256 family; Identified by match to protein family HMM TIGR02619.


ensembl_gene_id: CYB_0590
symbol: CYB_0590
gene_biotype: protein_coding
description:
  CRISPR-associated RAMP protein, SSO1426 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02581.


ensembl_gene_id: CYB_0593
symbol: csx10
gene_biotype: protein_coding
description:
  CRISPR-associated RAMP protein, Csx10 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02674.


ensembl_gene_id: CYB_0602
symbol: ntrC-2
gene_biotype: protein_coding
description:
  Nitrate ABC transporter, ATP-binding proteins NtrC; Identified by similarity to SP:P38045; match to protein family HMM PF00005; match to protein family HMM TIGR01184.


ensembl_gene_id: CYB_0603
symbol: ntrB-2
gene_biotype: protein_coding
description:
  Nitrate ABC transporter, permease protein; Identified by similarity to GB:AAB86903.1; match to protein family HMM PF00528; match to protein family HMM TIGR01183.


ensembl_gene_id: CYB_0604
symbol: CYB_0604
gene_biotype: protein_coding
description:
  Nitrate/nitrite/cyanate ABC transporter (NitT) family, periplasmic substrate-binding protein; Identified by similarity to SP:P39660; match to protein family HMM TIGR01409.


ensembl_gene_id: CYB_0607
symbol: clpC
gene_biotype: protein_coding
description:
  Clp protease, ATP-binding subunit ClpC; Identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.


ensembl_gene_id: CYB_0608
symbol: clpP-1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: CYB_0612
symbol: cpcT
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.


ensembl_gene_id: CYB_0613
symbol: CYB_0613
gene_biotype: protein_coding
description:
  Malate dehydrogenase (oxaloacetate-decarboxylating); Identified by match to protein family HMM PF00390; match to protein family HMM PF01842; match to protein family HMM PF03949.


ensembl_gene_id: CYB_0617
symbol: CYB_0617
gene_biotype: protein_coding
description:
  Peptidase, C14 family; Identified by match to protein family HMM PF00656; match to protein family HMM TIGR01409.


ensembl_gene_id: CYB_0624
symbol: tyrA
gene_biotype: protein_coding
description:
  Prephenate dehydrogenase; Identified by similarity to SP:P20692; match to protein family HMM PF02153; match to protein family HMM PF02254; match to protein family HMM PF02558; match to protein family HMM PF02737; match to protein family HMM PF03446; match to protein family HMM PF03807.


ensembl_gene_id: CYB_0626
symbol: ccsB
gene_biotype: protein_coding
description:
  Cytochrome c-type biogenesis protein ResB, putative; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.


ensembl_gene_id: CYB_0628
symbol: CYB_0628
gene_biotype: protein_coding
description:
  Ferredoxin-thioredoxin reductase, variable subunit; Identified by match to protein family HMM PF02941.


ensembl_gene_id: CYB_0631
symbol: hflB
gene_biotype: protein_coding
description:
  Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: CYB_0632
symbol: CYB_0632
gene_biotype: protein_coding
description:
  Alpha-glucan phosphorylase, putative; Identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094.


ensembl_gene_id: CYB_0635
symbol: tadA
gene_biotype: protein_coding
description:
  Cytidine and deoxycytidylate deaminase family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: CYB_0637
symbol: CYB_0637
gene_biotype: protein_coding
description:
  Protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF05419.


ensembl_gene_id: CYB_0642
symbol: CYB_0642
gene_biotype: protein_coding
description:
  GTPase family protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.


ensembl_gene_id: CYB_0644
symbol: ndhM
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.


ensembl_gene_id: CYB_0647
symbol: CYB_0647
gene_biotype: protein_coding
description:
  Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065; Belongs to the glycosyl hydrolase 57 family.


ensembl_gene_id: CYB_0648
symbol: ilvB
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.


ensembl_gene_id: CYB_0650
symbol: CYB_0650
gene_biotype: protein_coding
description:
  Oxidoreductase, NAD-binding; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.


ensembl_gene_id: CYB_0653
symbol: pheA
gene_biotype: protein_coding
description:
  Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.


ensembl_gene_id: CYB_0655
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: CYB_0656
symbol: sppA-1
gene_biotype: protein_coding
description:
  Signal peptide peptidase SppA, 36K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706.


ensembl_gene_id: CYB_0660
symbol: cyoE
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: CYB_0662
symbol: CYB_0662
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, group 1; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: CYB_0669
symbol: recQ
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P50729; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614.


ensembl_gene_id: CYB_0673
symbol: psbY
gene_biotype: protein_coding
description:
  Photosystem II protein PsbY; Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II. Belongs to the PsbY family.


ensembl_gene_id: CYB_0677
symbol: CYB_0677
gene_biotype: protein_coding
description:
  Trehalose synthase/putative maltokinase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457.


ensembl_gene_id: CYB_0678
symbol: dprA
gene_biotype: protein_coding
description:
  DNA protecting protein DprA; Identified by match to protein family HMM PF00633; match to protein family HMM PF02481; match to protein family HMM TIGR00732.


ensembl_gene_id: CYB_0679
symbol: CYB_0679
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AC2205; match to protein family HMM PF02586; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: CYB_0681
symbol: CYB_0681
gene_biotype: protein_coding
description:
  Transporter, solute:sodium symporter (SSS) family; Identified by similarity to SP:P16256; match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: CYB_0683
symbol: clpS-1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: CYB_0686
symbol: CYB_0686
gene_biotype: protein_coding
description:
  Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM PF05157.


ensembl_gene_id: CYB_0694
symbol: hisS
gene_biotype: protein_coding
description:
  histidyl-tRNA synthetase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.


ensembl_gene_id: CYB_0695
symbol: CYB_0695
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: CYB_0696
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: CYB_0698
symbol: pcyA
gene_biotype: protein_coding
description:
  Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.


ensembl_gene_id: CYB_0701
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: CYB_0707
symbol: CYB_0707
gene_biotype: protein_coding
description:
  Cation transporter, voltage-gated ion channel (VIC) family; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.


ensembl_gene_id: CYB_0708
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: CYB_0709
symbol: maf
gene_biotype: protein_coding
description:
  Septum formation protein MaF; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: CYB_0712
symbol: CYB_0712
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: CYB_0714
symbol: chlD
gene_biotype: protein_coding
description:
  Magnesium chelatase, ATPase subunit D; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.


ensembl_gene_id: CYB_0717
symbol: CYB_0717
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: CYB_0718
symbol: CYB_0718
gene_biotype: protein_coding
description:
  Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: CYB_0724
symbol: CYB_0724
gene_biotype: protein_coding
description:
  High-affinity Na+/H+ antiporter; Identified by similarity to GB:BAA10332.1; match to protein family HMM PF00999.


ensembl_gene_id: CYB_0725
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: CYB_0726
symbol: CYB_0726
gene_biotype: protein_coding
description:
  GAF domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF01966.


ensembl_gene_id: CYB_0729
symbol: menC
gene_biotype: protein_coding
description:
  O-succinylbenzoate synthetase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).


ensembl_gene_id: CYB_0731
symbol: CYB_0731
gene_biotype: protein_coding
description:
  Peptidase M16B family, nonpeptidase-like protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.


ensembl_gene_id: CYB_0732
symbol: CYB_0732
gene_biotype: protein_coding
description:
  Peptidase, M16B family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.


ensembl_gene_id: CYB_0733
symbol: CYB_0733
gene_biotype: protein_coding
description:
  Peptidase, M50B family; Identified by match to protein family HMM PF02163; Belongs to the peptidase M50B family.


ensembl_gene_id: CYB_0734
symbol: nrdJ
gene_biotype: protein_coding
description:
  Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein containing; Identified by match to protein family HMM TIGR01443; match to protein family HMM TIGR02505.


ensembl_gene_id: CYB_0735
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, alpha subunit; Identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: CYB_0741
symbol: rpmA
gene_biotype: protein_coding
description:
  Ribosomal protein L27; Identified by similarity to SP:P05657; match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: CYB_0742
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: CYB_0748
symbol: CYB_0748
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.


ensembl_gene_id: CYB_0749
symbol: lpdA
gene_biotype: protein_coding
description:
  Dihydrolipoamide dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: CYB_0752
symbol: mutY
gene_biotype: protein_coding
description:
  A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR00586; match to protein family HMM TIGR01084.


ensembl_gene_id: CYB_0755
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: CYB_0765
symbol: CYB_0765
gene_biotype: protein_coding
description:
  Cation transporter, P-type ATPase family; Identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494.


ensembl_gene_id: CYB_0769
symbol: CYB_0769
gene_biotype: protein_coding
description:
  CobQ/CobB/MinD/ParA nucleotide binding domain protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: CYB_0770
symbol: CYB_0770
gene_biotype: protein_coding
description:
  Membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.


ensembl_gene_id: CYB_0772
symbol: CYB_0772
gene_biotype: protein_coding
description:
  Hydrophobic amino acid ABC transporter (HAAT) family, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF01094; match to protein family HMM TIGR01409.


ensembl_gene_id: CYB_0774
symbol: CYB_0774
gene_biotype: protein_coding
description:
  Hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_0780
symbol: CYB_0780
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988.


ensembl_gene_id: CYB_0782
symbol: CYB_0782
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC90045.1; match to protein family HMM TIGR02450.


ensembl_gene_id: CYB_0783
symbol: ispF
gene_biotype: protein_coding
description:
  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: CYB_0784
symbol: CYB_0784
gene_biotype: protein_coding
description:
  Peptide/opine/nickel ABC transporter (PepT) family, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.


ensembl_gene_id: CYB_0795
symbol: CYB_0795
gene_biotype: protein_coding
description:
  Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.


ensembl_gene_id: CYB_0797
symbol: CYB_0797
gene_biotype: protein_coding
description:
  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein; Identified by match to protein family HMM PF02779.


ensembl_gene_id: CYB_0798
symbol: CYB_0798
gene_biotype: protein_coding
description:
  CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.


ensembl_gene_id: CYB_0800
symbol: CYB_0800
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC89939.1; match to protein family HMM PF01724.


ensembl_gene_id: CYB_0801
symbol: mrr
gene_biotype: protein_coding
description:
  Mrr restriction system protein; Identified by similarity to SP:P24202; match to protein family HMM PF04471.


ensembl_gene_id: CYB_0803
symbol: phrB-2
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P25078; match to protein family HMM PF00875; match to protein family HMM PF03441; match to protein family HMM TIGR02765; Belongs to the DNA photolyase family.


ensembl_gene_id: CYB_0804
symbol: hup-1
gene_biotype: protein_coding
description:
  DNA-binding protein HU; Identified by similarity to SP:P02346; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: CYB_0807
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: CYB_0808
symbol: CYB_0808
gene_biotype: protein_coding
description:
  Transporter, small conductance mechanosensitive ion channel (MscS) family; Identified by similarity to SP:P77338; match to protein family HMM PF00924.


ensembl_gene_id: CYB_0810
symbol: pcxA
gene_biotype: protein_coding
description:
  CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family.


ensembl_gene_id: CYB_0812
symbol: psbX
gene_biotype: protein_coding
description:
  Photosystem II reaction center protein PsbX; Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.


ensembl_gene_id: CYB_0813
symbol: CYB_0813
gene_biotype: protein_coding
description:
  Ferredoxin-thioredoxin reductase, catalytic beta subunit; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.


ensembl_gene_id: CYB_0818
symbol: CYB_0818
gene_biotype: protein_coding
description:
  Peptidase, S8A (subtilisin) family; Identified by similarity to PIR:JW0075; match to protein family HMM PF00082.


ensembl_gene_id: CYB_0819
symbol: CYB_0819
gene_biotype: protein_coding
description:
  Proton transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.


ensembl_gene_id: CYB_0820
symbol: sll1405
gene_biotype: protein_coding
description:
  Proton transporter, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.


ensembl_gene_id: CYB_0821
symbol: argF
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.


ensembl_gene_id: CYB_0822
symbol: prc-1
gene_biotype: protein_coding
description:
  C-terminal processing peptidase; Identified by similarity to SP:Q55669; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.


ensembl_gene_id: CYB_0823
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: CYB_0828
symbol: recJ-1
gene_biotype: protein_coding
description:
  single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM TIGR00644.


ensembl_gene_id: CYB_0830
symbol: rdgB
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: CYB_0832
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: CYB_0834
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: CYB_0835
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: CYB_0840
symbol: cmr4
gene_biotype: protein_coding
description:
  CRISPR-associated RAMP protein, Cmr4 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580.


ensembl_gene_id: CYB_0843
symbol: CYB_0843
gene_biotype: protein_coding
description:
  CRISPR-associated protein, TM1812 family; Identified by match to protein family HMM TIGR02221; match to protein family HMM TIGR02549.


ensembl_gene_id: CYB_0849
symbol: CYB_0849
gene_biotype: protein_coding
description:
  ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.


ensembl_gene_id: CYB_0850
symbol: CYB_0850
gene_biotype: protein_coding
description:
  OppBC ABC transporter family, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.


ensembl_gene_id: CYB_0852
symbol: cobW
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475.


ensembl_gene_id: CYB_0853
symbol: psbC
gene_biotype: protein_coding
description:
  Photosystem II 44 kDa subunit reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbC subfamily.


ensembl_gene_id: CYB_0854
symbol: psbD-1
gene_biotype: protein_coding
description:
  Photosystem II protein D2; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex.


ensembl_gene_id: CYB_0855
symbol: petM
gene_biotype: protein_coding
description:
  Cytochrome b6-f complex, subunit VII; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.


ensembl_gene_id: CYB_0856
symbol: panE-1
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: CYB_0869
symbol: ndhI
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, I subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient; Belongs to the complex I 23 kDa subunit family.


ensembl_gene_id: CYB_0870
symbol: ndhA
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, subunit 1 family; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: CYB_0872
symbol: ndhH
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, H subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.


ensembl_gene_id: CYB_0874
symbol: CYB_0874
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: CYB_0877
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: CYB_0878
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: CYB_0884
symbol: surE-1
gene_biotype: protein_coding
description:
  Acid phosphatase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: CYB_0885
symbol: CYB_0885
gene_biotype: protein_coding
description:
  Putative helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.


ensembl_gene_id: CYB_0888
symbol: CYB_0888
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AE1929; match to protein family HMM PF04543.


ensembl_gene_id: CYB_0889
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: CYB_0890
symbol: CYB_0890
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: CYB_0891
symbol: CYB_0891
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:Q8YNA5; match to protein family HMM PF04461; Belongs to the UPF0234 family.


ensembl_gene_id: CYB_0896
symbol: hup-2
gene_biotype: protein_coding
description:
  DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: CYB_0897
symbol: cobD-1
gene_biotype: protein_coding
description:
  L-threonine-O-3-phosphate decarboxylase; Identified by similarity to GB:AAC79515.1; match to protein family HMM PF00155; match to protein family HMM TIGR01140.


ensembl_gene_id: CYB_0901
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: CYB_0905
symbol: aat
gene_biotype: protein_coding
description:
  leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: CYB_0906
symbol: CYB_0906
gene_biotype: protein_coding
description:
  Low molecular weight phosphotyrosine protein phosphatase family protein; Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: CYB_0908
symbol: chlH
gene_biotype: protein_coding
description:
  Magnesium chelatase, H subunit; Identified by match to protein family HMM PF02514; match to protein family HMM TIGR02025.


ensembl_gene_id: CYB_0909
symbol: gspO
gene_biotype: protein_coding
description:
  Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.


ensembl_gene_id: CYB_0911
symbol: cphA
gene_biotype: protein_coding
description:
  Cyanophycin synthetase; Identified by match to protein family HMM PF02875; match to protein family HMM TIGR02068; Belongs to the MurCDEF family.


ensembl_gene_id: CYB_0912
symbol: CYB_0912
gene_biotype: protein_coding
description:
  DNA internalization competence protein, ComEC/Rec2 family; Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.


ensembl_gene_id: CYB_0914
symbol: CYB_0914
gene_biotype: protein_coding
description:
  Transporter, stomatin/podocin/band 7/nephrosis.2/SPFH (Stomatin) family; Identified by match to protein family HMM PF01145.


ensembl_gene_id: CYB_0917
symbol: CYB_0917
gene_biotype: protein_coding
description:
  Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277.


ensembl_gene_id: CYB_0919
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: CYB_0920
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: CYB_0921
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: CYB_0922
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: CYB_0923
symbol: CYB_0923
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF02219; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: CYB_0924
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: CYB_0929
symbol: tatC
gene_biotype: protein_coding
description:
  Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.


ensembl_gene_id: CYB_0930
symbol: CYB_0930
gene_biotype: protein_coding
description:
  Polar amino amino acid ABC transporter (PAAT) family, permease protein; Identified by similarity to SP:Q52814; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: CYB_0931
symbol: CYB_0931
gene_biotype: protein_coding
description:
  Polar amino amino acid ABC transporter (PAAT) family, permease protein; Identified by similarity to SP:Q52813; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: CYB_0932
symbol: CYB_0932
gene_biotype: protein_coding
description:
  Polar amino amino acid ABC transporter (PAAT) family, periplasmic amino acid-binding protein; Identified by similarity to SP:Q52812; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: CYB_0933
symbol: CYB_0933
gene_biotype: protein_coding
description:
  Polar amino amino acid ABC transporter (PAAT) family, ATP-binding protein; Identified by similarity to SP:Q52815; match to protein family HMM PF00005.


ensembl_gene_id: CYB_0936
symbol: CYB_0936
gene_biotype: protein_coding
description:
  Hydrophobic amino acid uptake ABC transporter (HAAT) family, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF01094.


ensembl_gene_id: CYB_0937
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: CYB_0939
symbol: cpcB-1
gene_biotype: protein_coding
description:
  Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.


ensembl_gene_id: CYB_0940
symbol: cpcA-1
gene_biotype: protein_coding
description:
  Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.


ensembl_gene_id: CYB_0941
symbol: cpcD
gene_biotype: protein_coding
description:
  Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P31966; match to protein family HMM PF01383.


ensembl_gene_id: CYB_0942
symbol: cpcE-1
gene_biotype: protein_coding
description:
  Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130.


ensembl_gene_id: CYB_0944
symbol: cpcG1
gene_biotype: protein_coding
description:
  Phycobilisome rod-core linker polypeptide cpcG1; Identified by similarity to SP:P29986; match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.


ensembl_gene_id: CYB_0950
symbol: CYB_0950
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.


ensembl_gene_id: CYB_0952
symbol: CYB_0952
gene_biotype: protein_coding
description:
  Transporter, major facilitator family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.


ensembl_gene_id: CYB_0956
symbol: pip
gene_biotype: protein_coding
description:
  Prolyl aminopeptidase; Identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249; Belongs to the peptidase S33 family.


ensembl_gene_id: CYB_0963
symbol: psb27
gene_biotype: protein_coding
description:
  Putative photosystem II protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.


ensembl_gene_id: CYB_0966
symbol: CYB_0966
gene_biotype: protein_coding
description:
  Methyltransferase, HemK family; Identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536.


ensembl_gene_id: CYB_0967
symbol: CYB_0967
gene_biotype: protein_coding
description:
  Chloroplast envelope protein translocase (CEPT or Tic-Toc) family protein; Identified by match to protein family HMM PF04278.


ensembl_gene_id: CYB_0971
symbol: ilvN
gene_biotype: protein_coding
description:
  Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.


ensembl_gene_id: CYB_0974
symbol: glk
gene_biotype: protein_coding
description:
  Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.


ensembl_gene_id: CYB_0976
symbol: CYB_0976
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF02353; Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family.


ensembl_gene_id: CYB_0977
symbol: CYB_0977
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC09647.1; match to protein family HMM PF01935.


ensembl_gene_id: CYB_0978
symbol: CYB_0978
gene_biotype: protein_coding
description:
  Putative 2-octaprenyl-6-methoxyphenol hydroxylase; Identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988.


ensembl_gene_id: CYB_0983
symbol: coaBC
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: CYB_0985
symbol: CYB_0985
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.


ensembl_gene_id: CYB_0986
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: CYB_0987
symbol: CYB_0987
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.


ensembl_gene_id: CYB_0990
symbol: CYB_0990
gene_biotype: protein_coding
description:
  Membrane-associated zinc metalloprotease, putative; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.


ensembl_gene_id: CYB_0991
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: CYB_0993
symbol: CYB_0993
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: CYB_0997
symbol: CYB_0997
gene_biotype: protein_coding
description:
  Glycosyl transferase, group 2; Identified by match to protein family HMM PF00535; match to protein family HMM PF04138.


ensembl_gene_id: CYB_0998
symbol: CYB_0998
gene_biotype: protein_coding
description:
  HDIG domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277.


ensembl_gene_id: CYB_1001
symbol: CYB_1001
gene_biotype: protein_coding
description:
  Putative cell envelope-related function transcriptional attenuator; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.


ensembl_gene_id: CYB_1002
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: CYB_1005
symbol: glnA-1
gene_biotype: protein_coding
description:
  Glutamine synthetase; Identified by similarity to SP:P31592; match to protein family HMM PF00120; match to protein family HMM PF03951; Belongs to the glutamine synthetase family.


ensembl_gene_id: CYB_1006
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: CYB_1008
symbol: CYB_1008
gene_biotype: protein_coding
description:
  Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990.


ensembl_gene_id: CYB_1012
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde-2,1-aminomutase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00713; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.


ensembl_gene_id: CYB_1013
symbol: chlN
gene_biotype: protein_coding
description:
  Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex.


ensembl_gene_id: CYB_1015
symbol: CYB_1015
gene_biotype: protein_coding
description:
  Light-dependent protochlorophyllide reductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide).


ensembl_gene_id: CYB_1016
symbol: chlL
gene_biotype: protein_coding
description:
  Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.


ensembl_gene_id: CYB_1018
symbol: murQ
gene_biotype: protein_coding
description:
  Glucokinase regulator-like protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.


ensembl_gene_id: CYB_1022
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: CYB_1027
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: CYB_1030
symbol: CYB_1030
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: CYB_1031
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: CYB_1040
symbol: cobA
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: CYB_1044
symbol: CYB_1044
gene_biotype: protein_coding
description:
  DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: CYB_1049
symbol: gshB
gene_biotype: protein_coding
description:
  Glutathione synthase; Identified by match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: CYB_1051
symbol: rpmB
gene_biotype: protein_coding
description:
  Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: CYB_1053
symbol: CYB_1053
gene_biotype: protein_coding
description:
  Putative transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_1055
symbol: CYB_1055
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC90963.1; match to protein family HMM PF01936.


ensembl_gene_id: CYB_1060
symbol: zds
gene_biotype: protein_coding
description:
  Carotene 7,8-desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.


ensembl_gene_id: CYB_1061
symbol: CYB_1061
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AE2046; match to protein family HMM PF05685.


ensembl_gene_id: CYB_1062
symbol: CYB_1062
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC89307.1; match to protein family HMM PF05685.


ensembl_gene_id: CYB_1064
symbol: CYB_1064
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC08086.1; match to protein family HMM PF02325.


ensembl_gene_id: CYB_1067
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR02091; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: CYB_1068
symbol: CYB_1068
gene_biotype: protein_coding
description:
  Putative chromosome partitioning protein ParA; Identified by similarity to SP:O05189; match to protein family HMM PF01656.


ensembl_gene_id: CYB_1070
symbol: sat
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase; Identified by match to protein family HMM PF01747; match to protein family HMM TIGR00339; Belongs to the sulfate adenylyltransferase family.


ensembl_gene_id: CYB_1073
symbol: CYB_1073
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.


ensembl_gene_id: CYB_1074
symbol: pstB-1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: CYB_1075
symbol: pstA-1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PtsA; Identified by similarity to SP:P07654; match to protein family HMM PF00528; match to protein family HMM TIGR00974.


ensembl_gene_id: CYB_1076
symbol: pstC-1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: CYB_1077
symbol: pstS-1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, periplasmic phosphate-binding protein; Identified by similarity to SP:P06128; match to protein family HMM PF01547; match to protein family HMM TIGR00975; match to protein family HMM TIGR01409; Belongs to the PstS family.


ensembl_gene_id: CYB_1081
symbol: dnaB
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: CYB_1089
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: CYB_1094
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: CYB_1095
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: CYB_1096
symbol: CYB_1096
gene_biotype: protein_coding
description:
  Putative nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: CYB_1100
symbol: hisZ
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.


ensembl_gene_id: CYB_1106
symbol: recJ-2
gene_biotype: protein_coding
description:
  single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.


ensembl_gene_id: CYB_1112
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 1 subfamily.


ensembl_gene_id: CYB_1113
symbol: CYB_1113
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: CYB_1115
symbol: ppsA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: CYB_1116
symbol: CYB_1116
gene_biotype: protein_coding
description:
  2-oxo acid dehydrogenase, acyltransferase, putative; Identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817.


ensembl_gene_id: CYB_1117
symbol: lipA-1
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: CYB_1119
symbol: tkt
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: CYB_1126
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: CYB_1127
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: CYB_1129
symbol: CYB_1129
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AG2284; match to protein family HMM PF04296.


ensembl_gene_id: CYB_1135
symbol: CYB_1135
gene_biotype: protein_coding
description:
  ATPase, arsenite-antimonite (ArsAB) efflux transporter family; Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345.


ensembl_gene_id: CYB_1137
symbol: CYB_1137
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AH2416; match to protein family HMM PF06485.


ensembl_gene_id: CYB_1141
symbol: gcvT
gene_biotype: protein_coding
description:
  Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.


ensembl_gene_id: CYB_1142
symbol: CYB_1142
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: CYB_1143
symbol: CYB_1143
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC91746.1; match to protein family HMM PF06868.


ensembl_gene_id: CYB_1145
symbol: CYB_1145
gene_biotype: protein_coding
description:
  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein; Identified by match to protein family HMM PF03894.


ensembl_gene_id: CYB_1146
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: CYB_1152
symbol: CYB_1152
gene_biotype: protein_coding
description:
  Transporter, folate-biopterin transporter (FBT) family; Identified by match to protein family HMM PF03092; match to protein family HMM PF07690; match to protein family HMM TIGR00788.


ensembl_gene_id: CYB_1154
symbol: scpA
gene_biotype: protein_coding
description:
  Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: CYB_1161
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: CYB_1162
symbol: CYB_1162
gene_biotype: protein_coding
description:
  Cation ABC transporter, cation-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: CYB_1163
symbol: CYB_1163
gene_biotype: protein_coding
description:
  Manganese/zinc/iron chelate ABC transporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_1164
symbol: CYB_1164
gene_biotype: protein_coding
description:
  Manganese/zinc/iron chelate ABC transporter (MZT) family, permease protein; Identified by similarity to GB:AAD56938.1; match to protein family HMM PF00950.


ensembl_gene_id: CYB_1166
symbol: gidB
gene_biotype: protein_coding
description:
  Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: CYB_1171
symbol: CYB_1171
gene_biotype: protein_coding
description:
  Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.


ensembl_gene_id: CYB_1178
symbol: CYB_1178
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: CYB_1183
symbol: dnaE
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; Identified by similarity to SP:O34623; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594.


ensembl_gene_id: CYB_1186
symbol: CYB_1186
gene_biotype: protein_coding
description:
  Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.


ensembl_gene_id: CYB_1187
symbol: CYB_1187
gene_biotype: protein_coding
description:
  TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.


ensembl_gene_id: CYB_1191
symbol: trmU
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: CYB_1193
symbol: CYB_1193
gene_biotype: protein_coding
description:
  Amine oxidase, flavin-containing; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.


ensembl_gene_id: CYB_1194
symbol: CYB_1194
gene_biotype: protein_coding
description:
  WD-repeat/protein kinase domain protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF00400.


ensembl_gene_id: CYB_1196
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: CYB_1198
symbol: CYB_1198
gene_biotype: protein_coding
description:
  Alkaline phosphatase; Identified by match to protein family HMM PF00245; Belongs to the alkaline phosphatase family.


ensembl_gene_id: CYB_1202
symbol: CYB_1202
gene_biotype: protein_coding
description:
  Hydrophobic amino acid uptake ABC transporter (HAAT) family, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CYB_1205
symbol: CYB_1205
gene_biotype: protein_coding
description:
  Putative ABC-2 type transporter, permease protein; Identified by match to protein family HMM PF01061.


ensembl_gene_id: CYB_1206
symbol: CYB_1206
gene_biotype: protein_coding
description:
  Drug exporter-1 ABC transporter (DrugE1) family, ATP-binding protein; Identified by similarity to SP:P32010; match to protein family HMM PF00005.


ensembl_gene_id: CYB_1207
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: CYB_1208
symbol: cydA
gene_biotype: protein_coding
description:
  Cytochrome d ubiquinol oxidase, subunit I; Identified by match to protein family HMM PF01654; Belongs to the cytochrome ubiquinol oxidase subunit 1 family.


ensembl_gene_id: CYB_1209
symbol: cydB
gene_biotype: protein_coding
description:
  Cytochrome d ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203.


ensembl_gene_id: CYB_1210
symbol: CYB_1210
gene_biotype: protein_coding
description:
  ISSoc2, transposase, truncation; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_1212
symbol: rimI
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine acetyltransferase; Identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575.


ensembl_gene_id: CYB_1214
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: CYB_1217
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: CYB_1219
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: CYB_1220
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: CYB_1221
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: CYB_1222
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: CYB_1223
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: CYB_1224
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: CYB_1226
symbol: CYB_1226
gene_biotype: protein_coding
description:
  Iron-sulfur cluster-binding protein, Rieske family; Identified by match to protein family HMM PF00355.


ensembl_gene_id: CYB_1229
symbol: rpsU
gene_biotype: protein_coding
description:
  Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: CYB_1233
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: CYB_1234
symbol: CYB_1234
gene_biotype: protein_coding
description:
  Heavy metal ABC transporter (HMT) family, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.


ensembl_gene_id: CYB_1235
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: CYB_1236
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, small subunit; Identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; Belongs to the CarA family.


ensembl_gene_id: CYB_1237
symbol: CYB_1237
gene_biotype: protein_coding
description:
  Type IV pilin, putative; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.


ensembl_gene_id: CYB_1242
symbol: CYB_1242
gene_biotype: protein_coding
description:
  DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: CYB_1244
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: CYB_1248
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: CYB_1250
symbol: CYB_1250
gene_biotype: protein_coding
description:
  Sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM TIGR00229.


ensembl_gene_id: CYB_1251
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: CYB_1253
symbol: gltS
gene_biotype: protein_coding
description:
  Ferredoxin-dependent glutamate synthase; Identified by similarity to SP:P55038; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.


ensembl_gene_id: CYB_1254
symbol: acsF
gene_biotype: protein_coding
description:
  Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.


ensembl_gene_id: CYB_1257
symbol: CYB_1257
gene_biotype: protein_coding
description:
  Transporter, chromate ion transporter (CHR) family; Identified by similarity to SP:P17551; match to protein family HMM PF02417; match to protein family HMM TIGR00937.


ensembl_gene_id: CYB_1258
symbol: lgt-1
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: CYB_1261
symbol: CYB_1261
gene_biotype: protein_coding
description:
  Coenzyme F420 hydrogenase/dehydrogenase family protein; Identified by match to protein family HMM PF04422; match to protein family HMM PF04432.


ensembl_gene_id: CYB_1263
symbol: engA
gene_biotype: protein_coding
description:
  GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: CYB_1264
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: CYB_1266
symbol: CYB_1266
gene_biotype: protein_coding
description:
  Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.


ensembl_gene_id: CYB_1268
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: CYB_1269
symbol: CYB_1269
gene_biotype: protein_coding
description:
  SpoIID/LytB domain protein; Identified by similarity to PIR:S76564; match to protein family HMM TIGR02669.


ensembl_gene_id: CYB_1278
symbol: ndhE
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4L family; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.


ensembl_gene_id: CYB_1279
symbol: CYB_1279
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I subunit 6 family.


ensembl_gene_id: CYB_1280
symbol: CYB_1280
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:G72311; match to protein family HMM PF04536.


ensembl_gene_id: CYB_1283
symbol: mtnN
gene_biotype: protein_coding
description:
  MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.


ensembl_gene_id: CYB_1289
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: CYB_1292
symbol: CYB_1292
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AH2105; match to protein family HMM PF05685.


ensembl_gene_id: CYB_1298
symbol: crtH
gene_biotype: protein_coding
description:
  Carotenoid isomerase; Identified by similarity to GB:AAM71888.1; match to protein family HMM PF01266; match to protein family HMM TIGR02730.


ensembl_gene_id: CYB_1299
symbol: potB
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528.


ensembl_gene_id: CYB_1301
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CYB_1304
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: CYB_1306
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: CYB_1307
symbol: CYB_1307
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: CYB_1309
symbol: CYB_1309
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00268; Identified by similarity to PIR:AC1967; match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268.


ensembl_gene_id: CYB_1319
symbol: CYB_1319
gene_biotype: protein_coding
description:
  Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.


ensembl_gene_id: CYB_1320
symbol: CYB_1320
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AB1961; match to protein family HMM PF03190.


ensembl_gene_id: CYB_1326
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: CYB_1327
symbol: mraW
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: CYB_1330
symbol: CYB_1330
gene_biotype: protein_coding
description:
  Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.


ensembl_gene_id: CYB_1331
symbol: CYB_1331
gene_biotype: protein_coding
description:
  Iron-sulfur cluster-binding protein, putative; Identified by similarity to SP:P07324; match to protein family HMM PF07845.


ensembl_gene_id: CYB_1334
symbol: CYB_1334
gene_biotype: protein_coding
description:
  Arsenite-antimonite (ArsAB) efflux family transporter, ATP-binding protein; Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345.


ensembl_gene_id: CYB_1335
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: CYB_1336
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: CYB_1337
symbol: CYB_1337
gene_biotype: protein_coding
description:
  K+ transporter, Trk family; Identified by match to protein family HMM PF01210; match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF03446.


ensembl_gene_id: CYB_1338
symbol: CYB_1338
gene_biotype: protein_coding
description:
  K+ transporter, Trk family; Identified by similarity to GB:BAA32063.1; match to protein family HMM PF02386.


ensembl_gene_id: CYB_1348
symbol: CYB_1348
gene_biotype: protein_coding
description:
  Succinate/fumarate oxidoreductase, putative; Identified by similarity to GB:CAA06782.1; match to protein family HMM PF02754.


ensembl_gene_id: CYB_1350
symbol: CYB_1350
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR01033; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.


ensembl_gene_id: CYB_1351
symbol: CYB_1351
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:Q8YU66; match to protein family HMM PF01906; Belongs to the UPF0145 family.


ensembl_gene_id: CYB_1353
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: CYB_1355
symbol: CYB_1355
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AC1974; match to protein family HMM PF07602.


ensembl_gene_id: CYB_1358
symbol: ald
gene_biotype: protein_coding
description:
  Alanine dehydrogenase; Identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518; Belongs to the AlaDH/PNT family.


ensembl_gene_id: CYB_1362
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: CYB_1368
symbol: pcrA
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.


ensembl_gene_id: CYB_1371
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: CYB_1372
symbol: psbN
gene_biotype: protein_coding
description:
  Photosystem II reaction center protein PsbN; May play a role in photosystem I and II biogenesis. Belongs to the PsbN family.


ensembl_gene_id: CYB_1373
symbol: psbH
gene_biotype: protein_coding
description:
  Photosystem II reaction center protein PsbH; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.


ensembl_gene_id: CYB_1375
symbol: CYB_1375
gene_biotype: protein_coding
description:
  Glycosyl hydrolase, family 31; Identified by match to protein family HMM PF01055; Belongs to the glycosyl hydrolase 31 family.


ensembl_gene_id: CYB_1382
symbol: folC
gene_biotype: protein_coding
description:
  Folylpolyglutamate synthase; Identified by similarity to SP:Q05865; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: CYB_1383
symbol: serA
gene_biotype: protein_coding
description:
  D-3-phosphoglycerate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; match to protein family HMM TIGR01327; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: CYB_1384
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: CYB_1390
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: CYB_1391
symbol: accC
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: CYB_1392
symbol: CYB_1392
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family.


ensembl_gene_id: CYB_1402
symbol: sufD
gene_biotype: protein_coding
description:
  FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.


ensembl_gene_id: CYB_1403
symbol: sufC
gene_biotype: protein_coding
description:
  FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.


ensembl_gene_id: CYB_1404
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: CYB_1405
symbol: sufB
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.


ensembl_gene_id: CYB_1406
symbol: sufR
gene_biotype: protein_coding
description:
  Iron-sulfur cluster biosynthesis transcriptional regulator SufR; Identified by similarity to PIR:S76597; match to protein family HMM PF08220; match to protein family HMM TIGR02702.


ensembl_gene_id: CYB_1407
symbol: CYB_1407
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: CYB_1408
symbol: folB-1
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: CYB_1412
symbol: CYB_1412
gene_biotype: protein_coding
description:
  GDSL-like lipase/acylhydrolase domain protein; Identified by match to protein family HMM PF00657; match to protein family HMM PF00686.


ensembl_gene_id: CYB_1414
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: CYB_1419
symbol: argD
gene_biotype: protein_coding
description:
  Acetylornithine transaminase; Identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: CYB_1421
symbol: aspB
gene_biotype: protein_coding
description:
  Aminotransferase, classes I and II; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate.


ensembl_gene_id: CYB_1424
symbol: hemG
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.


ensembl_gene_id: CYB_1425
symbol: hom
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Identified by similarity to SP:P08499; match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447.


ensembl_gene_id: CYB_1429
symbol: gap-1
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: CYB_1430
symbol: ampG
gene_biotype: protein_coding
description:
  Peptide-acetyl-coenzyme A transporter (PAT) family protein AmpG; Identified by similarity to SP:P36670; match to protein family HMM PF07690.


ensembl_gene_id: CYB_1431
symbol: CYB_1431
gene_biotype: protein_coding
description:
  Oxidoreductase, NAD-binding; Identified by match to protein family HMM PF01118; match to protein family HMM PF01408.


ensembl_gene_id: CYB_1437
symbol: hslO
gene_biotype: protein_coding
description:
  Hsp33 family protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: CYB_1438
symbol: apcA
gene_biotype: protein_coding
description:
  Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.


ensembl_gene_id: CYB_1439
symbol: apcB-1
gene_biotype: protein_coding
description:
  Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337.


ensembl_gene_id: CYB_1440
symbol: apcC
gene_biotype: protein_coding
description:
  Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.


ensembl_gene_id: CYB_1442
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: CYB_1443
symbol: CYB_1443
gene_biotype: protein_coding
description:
  Putative arylamine N-acetyltransferase; Identified by similarity to SP:P50293; match to protein family HMM PF00797; Belongs to the arylamine N-acetyltransferase family.


ensembl_gene_id: CYB_1444
symbol: moaD
gene_biotype: protein_coding
description:
  Molybdopterin converting factor, subunit 1; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; match to protein family HMM TIGR01687.


ensembl_gene_id: CYB_1445
symbol: pnpA
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: CYB_1448
symbol: CYB_1448
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.


ensembl_gene_id: CYB_1452
symbol: CYB_1452
gene_biotype: protein_coding
description:
  NADPH-dependent FMN reductase; Identified by match to protein family HMM PF02525; match to protein family HMM PF03358.


ensembl_gene_id: CYB_1453
symbol: CYB_1453
gene_biotype: protein_coding
description:
  Sensor histidine kinase; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518.


ensembl_gene_id: CYB_1456
symbol: CYB_1456
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC90187.1; match to protein family HMM PF04248.


ensembl_gene_id: CYB_1458
symbol: CYB_1458
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: CYB_1463
symbol: ycf4
gene_biotype: protein_coding
description:
  Photosystem I assembly protein Ycf4; Seems to be required for the assembly of the photosystem I complex; Belongs to the Ycf4 family.


ensembl_gene_id: CYB_1464
symbol: CYB_1464
gene_biotype: protein_coding
description:
  Polyamine/opine/phosphonate uptake ABC transporter family,periplasmic substrate-binding protein; Identified by match to protein family HMM PF01547.


ensembl_gene_id: CYB_1465
symbol: phnD-2
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, periplasmic phosphonate-binding protein; Identified by match to protein family HMM TIGR01098.


ensembl_gene_id: CYB_1471
symbol: ndhB
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, B subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.


ensembl_gene_id: CYB_1472
symbol: gvpK
gene_biotype: protein_coding
description:
  HAD hydrolase-like protein/gas vesicle protein K; Identified by match to protein family HMM PF00741.


ensembl_gene_id: CYB_1473
symbol: CYB_1473
gene_biotype: protein_coding
description:
  Peptidylprolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: CYB_1477
symbol: CYB_1477
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 factor family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: CYB_1478
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: CYB_1481
symbol: CYB_1481
gene_biotype: protein_coding
description:
  Copper-translocating P-type ATPase; Identified by similarity to SP:P37385; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.


ensembl_gene_id: CYB_1487
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: CYB_1490
symbol: malQ
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.


ensembl_gene_id: CYB_1492
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF07973; match to protein family HMM TIGR00418; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: CYB_1493
symbol: CYB_1493
gene_biotype: protein_coding
description:
  Putative exopolyphosphatase; Identified by match to protein family HMM PF01966; match to protein family HMM PF02541.


ensembl_gene_id: CYB_1495
symbol: psbE
gene_biotype: protein_coding
description:
  Cytochrome b559, alpha subunit; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family.


ensembl_gene_id: CYB_1496
symbol: psbF
gene_biotype: protein_coding
description:
  Cytochrome b559, beta subunit; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family.


ensembl_gene_id: CYB_1497
symbol: psbL
gene_biotype: protein_coding
description:
  Photosystem II reaction center protein PsbL; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization.


ensembl_gene_id: CYB_1498
symbol: psbJ
gene_biotype: protein_coding
description:
  Photosystem II reaction center protein PsbJ; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.


ensembl_gene_id: CYB_1508
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: CYB_1509
symbol: CYB_1509
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:Q8R8N9; match to protein family HMM PF01871.


ensembl_gene_id: CYB_1510
symbol: coaX
gene_biotype: protein_coding
description:
  Transcriptional activator, putative, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.


ensembl_gene_id: CYB_1511
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: CYB_1512
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: CYB_1513
symbol: CYB_1513
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AG2270; match to protein family HMM PF05685.


ensembl_gene_id: CYB_1514
symbol: lysS
gene_biotype: protein_coding
description:
  lysyl-tRNA synthetase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: CYB_1515
symbol: CYB_1515
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat/protein kinase domain protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.


ensembl_gene_id: CYB_1516
symbol: CYB_1516
gene_biotype: protein_coding
description:
  Copper resistance protein CopC/D; Identified by match to protein family HMM PF04234; match to protein family HMM PF05425.


ensembl_gene_id: CYB_1520
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: CYB_1521
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: CYB_1522
symbol: CYB_1522
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00805.


ensembl_gene_id: CYB_1534
symbol: rpsB
gene_biotype: protein_coding
description:
  Ribosomal protein S2; Identified by similarity to SP:P21464; match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: CYB_1535
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: CYB_1537
symbol: queG
gene_biotype: protein_coding
description:
  Iron-sulfur cluster binding protein, putative; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: CYB_1539
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663.


ensembl_gene_id: CYB_1543
symbol: CYB_1543
gene_biotype: protein_coding
description:
  RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: CYB_1545
symbol: pyk
gene_biotype: protein_coding
description:
  Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.


ensembl_gene_id: CYB_1548
symbol: CYB_1548
gene_biotype: protein_coding
description:
  Gas vesicle protein, GvpL/GvpF family; Identified by similarity to SP:P55149; match to protein family HMM PF06386.


ensembl_gene_id: CYB_1549
symbol: cugP
gene_biotype: protein_coding
description:
  Nucleotidyl transferase family protein; Catalyzes the formation of UDP-glucose, from UTP and glucose 1-phosphate.


ensembl_gene_id: CYB_1550
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: CYB_1555
symbol: devA
gene_biotype: protein_coding
description:
  Probable glycolipid ABC exporter (DevE) family, ATP-binding protein; Identified by similarity to GB:CAA05977.1; match to protein family HMM PF00005.


ensembl_gene_id: CYB_1556
symbol: fcl
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.


ensembl_gene_id: CYB_1557
symbol: devC
gene_biotype: protein_coding
description:
  Glycolipid ABC exporter (DevE) family, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.


ensembl_gene_id: CYB_1558
symbol: CYB_1558
gene_biotype: protein_coding
description:
  Transporter, membrane fusion protein (MFP) family; Identified by match to protein family HMM PF00529.


ensembl_gene_id: CYB_1565
symbol: CYB_1565
gene_biotype: protein_coding
description:
  Metal cation transporter, zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family; Identified by match to protein family HMM PF02535.


ensembl_gene_id: CYB_1568
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: CYB_1570
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: CYB_1571
symbol: CYB_1571
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.


ensembl_gene_id: CYB_1577
symbol: rpmJ
gene_biotype: protein_coding
description:
  Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: CYB_1578
symbol: rpsM
gene_biotype: protein_coding
description:
  Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: CYB_1579
symbol: rpsK
gene_biotype: protein_coding
description:
  Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: CYB_1580
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: CYB_1581
symbol: rplQ
gene_biotype: protein_coding
description:
  Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.


ensembl_gene_id: CYB_1582
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: CYB_1583
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: CYB_1584
symbol: rpsI
gene_biotype: protein_coding
description:
  Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: CYB_1585
symbol: rpmE
gene_biotype: protein_coding
description:
  Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.


ensembl_gene_id: CYB_1586
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: CYB_1587
symbol: acnB
gene_biotype: protein_coding
description:
  Aconitate hydratase 2; Identified by match to protein family HMM PF00330; match to protein family HMM PF06434; match to protein family HMM TIGR00117; Belongs to the aconitase/IPM isomerase family.


ensembl_gene_id: CYB_1590
symbol: CYB_1590
gene_biotype: protein_coding
description:
  Carbohydrate uptake ABC transporter-1 (CUT1) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CYB_1591
symbol: CYB_1591
gene_biotype: protein_coding
description:
  ISSoc14, transposase; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_1605
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: CYB_1606
symbol: psbW
gene_biotype: protein_coding
description:
  Photosystem II reaction center protein PsbW; Identified by match to protein family HMM PF03912; Belongs to the Psb28 family.


ensembl_gene_id: CYB_1607
symbol: CYB_1607
gene_biotype: protein_coding
description:
  Glycerate kinase; Identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: CYB_1609
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: CYB_1611
symbol: CYB_1611
gene_biotype: protein_coding
description:
  Sulfate transporter, sulfate permease (SulP) family; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.


ensembl_gene_id: CYB_1613
symbol: CYB_1613
gene_biotype: protein_coding
description:
  Putative S-layer protein; Identified by match to protein family HMM PF00395; Belongs to the OprB family.


ensembl_gene_id: CYB_1618
symbol: groL-1
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: CYB_1619
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin, 10 kDa; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: CYB_1620
symbol: CYB_1620
gene_biotype: protein_coding
description:
  Phenazine biosynthesis protein, PhzF family; Identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654.


ensembl_gene_id: CYB_1621
symbol: petA
gene_biotype: protein_coding
description:
  Apocytochrome F; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.


ensembl_gene_id: CYB_1622
symbol: petC
gene_biotype: protein_coding
description:
  Cytochrome b6-f complex, iron-sulfur subunit; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. Belongs to the Rieske iron-sulfur protein family.


ensembl_gene_id: CYB_1629
symbol: petB
gene_biotype: protein_coding
description:
  Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.


ensembl_gene_id: CYB_1630
symbol: petD
gene_biotype: protein_coding
description:
  Cytochrome b6-f complex, subunit IV; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.


ensembl_gene_id: CYB_1631
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.


ensembl_gene_id: CYB_1632
symbol: CYB_1632
gene_biotype: protein_coding
description:
  Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: CYB_1633
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: CYB_1634
symbol: rpmG
gene_biotype: protein_coding
description:
  Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: CYB_1636
symbol: rnz
gene_biotype: protein_coding
description:
  Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.


ensembl_gene_id: CYB_1638
symbol: CYB_1638
gene_biotype: protein_coding
description:
  Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.


ensembl_gene_id: CYB_1639
symbol: CYB_1639
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: CYB_1640
symbol: CYB_1640
gene_biotype: protein_coding
description:
  Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.


ensembl_gene_id: CYB_1641
symbol: CYB_1641
gene_biotype: protein_coding
description:
  Calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494.


ensembl_gene_id: CYB_1644
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: CYB_1645
symbol: dacA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.


ensembl_gene_id: CYB_1646
symbol: uppS
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: CYB_1648
symbol: CYB_1648
gene_biotype: protein_coding
description:
  Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.


ensembl_gene_id: CYB_1649
symbol: rodA
gene_biotype: protein_coding
description:
  Putative rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: CYB_1652
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: CYB_1653
symbol: CYB_1653
gene_biotype: protein_coding
description:
  Sensory box histidine kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07568; match to protein family HMM TIGR00229.


ensembl_gene_id: CYB_1655
symbol: rlpA
gene_biotype: protein_coding
description:
  Rare lipoprotein A family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: CYB_1656
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878.


ensembl_gene_id: CYB_1666
symbol: fabF
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: CYB_1668
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: CYB_1679
symbol: CYB_1679
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; Identified by match to protein family HMM PF02518.


ensembl_gene_id: CYB_1680
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: CYB_1683
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: CYB_1684
symbol: CYB_1684
gene_biotype: protein_coding
description:
  Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965.


ensembl_gene_id: CYB_1687
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: CYB_1688
symbol: CYB_1688
gene_biotype: protein_coding
description:
  ISSoc1, transposase; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_1689
symbol: CYB_1689
gene_biotype: protein_coding
description:
  ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.


ensembl_gene_id: CYB_1692
symbol: CYB_1692
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAT41985.1; match to protein family HMM PF06868.


ensembl_gene_id: CYB_1693
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: CYB_1694
symbol: pds
gene_biotype: protein_coding
description:
  Phytoene desaturase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02731.


ensembl_gene_id: CYB_1696
symbol: CYB_1696
gene_biotype: protein_coding
description:
  ATP-dependent helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.


ensembl_gene_id: CYB_1700
symbol: CYB_1700
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:B86128; match to protein family HMM PF04480.


ensembl_gene_id: CYB_1706
symbol: CYB_1706
gene_biotype: protein_coding
description:
  1-acyl-sn-glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.


ensembl_gene_id: CYB_1711
symbol: CYB_1711
gene_biotype: protein_coding
description:
  Ycf65-like protein; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family.


ensembl_gene_id: CYB_1723
symbol: CYB_1723
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC90629.1; match to protein family HMM PF04255.


ensembl_gene_id: CYB_1725
symbol: CYB_1725
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:B90305; match to protein family HMM PF05168.


ensembl_gene_id: CYB_1727
symbol: CYB_1727
gene_biotype: protein_coding
description:
  Helicase, Snf2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271.


ensembl_gene_id: CYB_1730
symbol: CYB_1730
gene_biotype: protein_coding
description:
  PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130.


ensembl_gene_id: CYB_1733
symbol: CYB_1733
gene_biotype: protein_coding
description:
  Putative methyltransferase; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095.


ensembl_gene_id: CYB_1736
symbol: psbD-2
gene_biotype: protein_coding
description:
  Photosystem II protein D2; Identified by match to protein family HMM PF00124; match to protein family HMM TIGR01152.


ensembl_gene_id: CYB_1737
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: CYB_1738
symbol: ribE
gene_biotype: protein_coding
description:
  Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.


ensembl_gene_id: CYB_1741
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: CYB_1743
symbol: CYB_1743
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC08801.1; match to protein family HMM PF04481.


ensembl_gene_id: CYB_1744
symbol: speB
gene_biotype: protein_coding
description:
  Agmatinase; Identified by similarity to SP:P70999; match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.


ensembl_gene_id: CYB_1746
symbol: CYB_1746
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00044; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: CYB_1747
symbol: sepF
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: CYB_1748
symbol: CYB_1748
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.


ensembl_gene_id: CYB_1749
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: CYB_1750
symbol: CYB_1750
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: CYB_1751
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: CYB_1752
symbol: argG
gene_biotype: protein_coding
description:
  Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM PF06508; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: CYB_1757
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecF subfamily.


ensembl_gene_id: CYB_1758
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.


ensembl_gene_id: CYB_1761
symbol: chlP
gene_biotype: protein_coding
description:
  Geranylgeranyl reductase; Identified by match to protein family HMM PF01494; match to protein family HMM TIGR02023; match to protein family HMM TIGR02028; match to protein family HMM TIGR02032.


ensembl_gene_id: CYB_1762
symbol: CYB_1762
gene_biotype: protein_coding
description:
  Polyamine ABC transporter, periplasmic polyamine-binding protein; Identified by similarity to SP:P23861; match to protein family HMM TIGR01409.


ensembl_gene_id: CYB_1763
symbol: CYB_1763
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: CYB_1765
symbol: CYB_1765
gene_biotype: protein_coding
description:
  Dehydrogenase, E1 component, beta subunit, putative; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.


ensembl_gene_id: CYB_1766
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: CYB_1767
symbol: CYB_1767
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00248.


ensembl_gene_id: CYB_1771
symbol: CYB_1771
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AI1986; match to protein family HMM PF05685.


ensembl_gene_id: CYB_1772
symbol: CYB_1772
gene_biotype: protein_coding
description:
  Flavodoxin; Identified by match to protein family HMM PF00258; match to protein family HMM PF00753; match to protein family HMM PF01613.


ensembl_gene_id: CYB_1775
symbol: CYB_1775
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AD2294; match to protein family HMM PF05685.


ensembl_gene_id: CYB_1776
symbol: CYB_1776
gene_biotype: protein_coding
description:
  Peptidase inhibitor, I4 family; Identified by match to protein family HMM PF00079; Belongs to the serpin family.


ensembl_gene_id: CYB_1778
symbol: CYB_1778
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC89870.1; match to protein family HMM PF02643.


ensembl_gene_id: CYB_1779
symbol: CYB_1779
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.


ensembl_gene_id: CYB_1781
symbol: thyX
gene_biotype: protein_coding
description:
  Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: CYB_1784
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole-succinocarboxamide synthase; Identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081; Belongs to the SAICAR synthetase family.


ensembl_gene_id: CYB_1786
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.


ensembl_gene_id: CYB_1789
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: CYB_1790
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: CYB_1794
symbol: ccmM
gene_biotype: protein_coding
description:
  Carbon dioxide concentrating mechanism protein CcmM; Identified by match to protein family HMM PF00101.


ensembl_gene_id: CYB_1795
symbol: ccmL
gene_biotype: protein_coding
description:
  Carbon dioxide concentrating mechanism protein CcmL; Identified by match to protein family HMM PF03319.


ensembl_gene_id: CYB_1796
symbol: ccmK-1
gene_biotype: protein_coding
description:
  Carbon dioxide concentrating mechanism protein CcmK; Identified by match to protein family HMM PF00936.


ensembl_gene_id: CYB_1798
symbol: CYB_1798
gene_biotype: protein_coding
description:
  Putative cobalt ABC transporter (CoT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_1803
symbol: petE
gene_biotype: protein_coding
description:
  Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.


ensembl_gene_id: CYB_1806
symbol: CYB_1806
gene_biotype: protein_coding
description:
  Potassium transporter, voltage-gated ion channel (VIC) family; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885.


ensembl_gene_id: CYB_1808
symbol: CYB_1808
gene_biotype: protein_coding
description:
  Soluble hydrogenase, tritium exchange subunit, putative; Identified by similarity to SP:P14776; match to protein family HMM PF00266.


ensembl_gene_id: CYB_1811
symbol: CYB_1811
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.


ensembl_gene_id: CYB_1812
symbol: CYB_1812
gene_biotype: protein_coding
description:
  NAD(P)H dehydrogenase, subunit NdhF3 family; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01960.


ensembl_gene_id: CYB_1815
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: CYB_1818
symbol: pepA
gene_biotype: protein_coding
description:
  Peptidase, M17 (leucyl aminopeptidase) family; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: CYB_1820
symbol: CYB_1820
gene_biotype: protein_coding
description:
  Peptidase, M23B family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.


ensembl_gene_id: CYB_1821
symbol: cysS
gene_biotype: protein_coding
description:
  cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: CYB_1823
symbol: CYB_1823
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family; Identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757.


ensembl_gene_id: CYB_1824
symbol: rnhB
gene_biotype: protein_coding
description:
  Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.


ensembl_gene_id: CYB_1829
symbol: gvpJ
gene_biotype: protein_coding
description:
  Gas vesicle protein J; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.


ensembl_gene_id: CYB_1830
symbol: gvpN
gene_biotype: protein_coding
description:
  Gas vesicle protein GvpN; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR02640.


ensembl_gene_id: CYB_1833
symbol: gvpA
gene_biotype: protein_coding
description:
  Gas vesicle protein A; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.


ensembl_gene_id: CYB_1839
symbol: aroH
gene_biotype: protein_coding
description:
  Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.


ensembl_gene_id: CYB_1842
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.


ensembl_gene_id: CYB_1847
symbol: ribD
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: CYB_1852
symbol: CYB_1852
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:S75306; match to protein family HMM PF07082.


ensembl_gene_id: CYB_1858
symbol: CYB_1858
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by similarity to PIR:AF1833; match to protein family HMM PF02681.


ensembl_gene_id: CYB_1859
symbol: crtE
gene_biotype: protein_coding
description:
  Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: CYB_1861
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: CYB_1864
symbol: CYB_1864
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; Identified by similarity to GB:AAD42859.1; match to protein family HMM PF00069; match to protein family HMM PF07719.


ensembl_gene_id: CYB_1867
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: CYB_1871
symbol: CYB_1871
gene_biotype: protein_coding
description:
  Drug exporter-1 ABC transporter (DrugE1) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01188.


ensembl_gene_id: CYB_1874
symbol: cefD
gene_biotype: protein_coding
description:
  Isopenicillin N-epimerase; Identified by similarity to SP:Q03046; match to protein family HMM PF00266.


ensembl_gene_id: CYB_1875
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: CYB_1878
symbol: aspC
gene_biotype: protein_coding
description:
  Aspartate aminotransferase; Identified by similarity to SP:Q59228; match to protein family HMM PF00155.


ensembl_gene_id: CYB_1880
symbol: CYB_1880
gene_biotype: protein_coding
description:
  Putative permease; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: CYB_1881
symbol: CYB_1881
gene_biotype: protein_coding
description:
  Peptide/opine/nickel uptake ABC transporter (PepT) family, ATP-binding protein; Identified by similarity to GB:AAC67221.1; match to protein family HMM PF00005.


ensembl_gene_id: CYB_1882
symbol: CYB_1882
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CYB_1883
symbol: CYB_1883
gene_biotype: protein_coding
description:
  Peptide/opine/nickel ABC transporter (PepT) family, permease protein; Identified by similarity to SP:P26904; match to protein family HMM PF00528.


ensembl_gene_id: CYB_1884
symbol: CYB_1884
gene_biotype: protein_coding
description:
  Peptide/opine/nickel ABC transporter (PepT) family, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.


ensembl_gene_id: CYB_1886
symbol: metE
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: CYB_1887
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Identified by similarity to SP:P10115; match to protein family HMM PF00005; match to protein family HMM TIGR02673.


ensembl_gene_id: CYB_1888
symbol: CYB_1888
gene_biotype: protein_coding
description:
  Glycosyl transferase, WecB/TagA/CpsF family; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: CYB_1889
symbol: CYB_1889
gene_biotype: protein_coding
description:
  Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.


ensembl_gene_id: CYB_1890
symbol: CYB_1890
gene_biotype: protein_coding
description:
  Copper-binding protein, plastocyanin/azurin family; Identified by similarity to SP:P22365; match to protein family HMM PF00127.


ensembl_gene_id: CYB_1895
symbol: sasA
gene_biotype: protein_coding
description:
  Adaptive-response sensory histidine kinase SasA; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.


ensembl_gene_id: CYB_1899
symbol: eda
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182.


ensembl_gene_id: CYB_1900
symbol: ybeY
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: CYB_1902
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: CYB_1908
symbol: CYB_1908
gene_biotype: protein_coding
description:
  2-methylcitrate synthase/citrate synthase II; Identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800; Belongs to the citrate synthase family.


ensembl_gene_id: CYB_1910
symbol: CYB_1910
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC92100.1; match to protein family HMM PF01724.


ensembl_gene_id: CYB_1915
symbol: pstS-2
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, phosphate-binding protein; Identified by similarity to SP:P06128; match to protein family HMM PF01547; match to protein family HMM TIGR00975; Belongs to the PstS family.


ensembl_gene_id: CYB_1917
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: CYB_1918
symbol: purB
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: CYB_1921
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: CYB_1923
symbol: CYB_1923
gene_biotype: protein_coding
description:
  Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.


ensembl_gene_id: CYB_1926
symbol: CYB_1926
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAA12859.1; match to protein family HMM PF01724.


ensembl_gene_id: CYB_1929
symbol: CYB_1929
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: CYB_1930
symbol: CYB_1930
gene_biotype: protein_coding
description:
  UDP-glucose dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721.


ensembl_gene_id: CYB_1931
symbol: CYB_1931
gene_biotype: protein_coding
description:
  Cation transporter, cation diffusion facilitator (CDF) family; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: CYB_1933
symbol: upp-1
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: CYB_1934
symbol: CYB_1934
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.


ensembl_gene_id: CYB_1935
symbol: CYB_1935
gene_biotype: protein_coding
description:
  Putative methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.


ensembl_gene_id: CYB_1940
symbol: CYB_1940
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAD80268.1; match to protein family HMM PF02325.


ensembl_gene_id: CYB_1941
symbol: CYB_1941
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein, alpha subunit/FixB family protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.


ensembl_gene_id: CYB_1942
symbol: CYB_1942
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein, beta subunit/FixA family protein; Identified by match to protein family HMM PF01012.


ensembl_gene_id: CYB_1944
symbol: argS
gene_biotype: protein_coding
description:
  arginyl-tRNA synthetase; Identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.


ensembl_gene_id: CYB_1948
symbol: CYB_1948
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: CYB_1950
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator, NrdR family; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: CYB_1958
symbol: CYB_1958
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AI1952; match to protein family HMM PF02678; Belongs to the pirin family.


ensembl_gene_id: CYB_1959
symbol: CYB_1959
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00150; Identified by similarity to GB:BAD79317.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150.


ensembl_gene_id: CYB_1961
symbol: recA
gene_biotype: protein_coding
description:
  recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: CYB_1962
symbol: CYB_1962
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: CYB_1963
symbol: sun
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.


ensembl_gene_id: CYB_1964
symbol: hisA
gene_biotype: protein_coding
description:
  Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; Identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007.


ensembl_gene_id: CYB_1965
symbol: CYB_1965
gene_biotype: protein_coding
description:
  Peptidase, M20D family; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: CYB_1972
symbol: CYB_1972
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to SP:Q8YSU5; match to protein family HMM PF05249.


ensembl_gene_id: CYB_1974
symbol: CYB_1974
gene_biotype: protein_coding
description:
  RNA polymerase sigma-70 domain protein; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family.


ensembl_gene_id: CYB_1975
symbol: tatA-1
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: CYB_1977
symbol: CYB_1977
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992.


ensembl_gene_id: CYB_1978
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: CYB_1982
symbol: cysK
gene_biotype: protein_coding
description:
  Cysteine synthase A; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: CYB_1983
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: CYB_1984
symbol: CYB_1984
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.


ensembl_gene_id: CYB_1985
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: CYB_1987
symbol: ilvD
gene_biotype: protein_coding
description:
  Dihydroxy-acid dehydratase; Identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110; Belongs to the IlvD/Edd family.


ensembl_gene_id: CYB_1988
symbol: CYB_1988
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:H83315; match to protein family HMM PF05787.


ensembl_gene_id: CYB_1990
symbol: anmK
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: CYB_1993
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: CYB_1994
symbol: radC
gene_biotype: protein_coding
description:
  DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.


ensembl_gene_id: CYB_1997
symbol: CYB_1997
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS family; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: CYB_2003
symbol: CYB_2003
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAQ63052.1; match to protein family HMM PF05685.


ensembl_gene_id: CYB_2009
symbol: CYB_2009
gene_biotype: protein_coding
description:
  Peptidase, M55 (DppA aminopeptidase) family; Identified by similarity to SP:P26902; match to protein family HMM PF04951.


ensembl_gene_id: CYB_2012
symbol: CYB_2012
gene_biotype: protein_coding
description:
  Urea ABC transporter, ATP-binding protein; Identified by similarity to GB:CAB70951.1; match to protein family HMM PF00005.


ensembl_gene_id: CYB_2013
symbol: CYB_2013
gene_biotype: protein_coding
description:
  Urea ABC transporter, permease protein; Identified by similarity to GB:CAB70950.1; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CYB_2014
symbol: CYB_2014
gene_biotype: protein_coding
description:
  Urea ABC transporter, permease protein; Identified by similarity to GB:CAB70949.1; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CYB_2015
symbol: CYB_2015
gene_biotype: protein_coding
description:
  Urea ABC transporter, periplasmic urea-binding protein; Identified by similarity to GB:CAB70948.1; match to protein family HMM PF01094; match to protein family HMM TIGR01409.


ensembl_gene_id: CYB_2017
symbol: CYB_2017
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AE2433; match to protein family HMM PF05685.


ensembl_gene_id: CYB_2018
symbol: ureE
gene_biotype: protein_coding
description:
  Urease accessory protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.


ensembl_gene_id: CYB_2021
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: CYB_2030
symbol: CYB_2030
gene_biotype: protein_coding
description:
  <=42% ID to ATP binding proteins of the following ABC transporter families: 3.A.1.102. The Lipooligosaccharide Exporter (LOSE) Family, 3.A.1.105. The Drug Exporter-1 (DrugE1) Family and 3.A.1.211. The Cholesterol/Phospholipid/Retinal (CPR) Flippase Family (ABCA); identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_2036
symbol: cbiQ
gene_biotype: protein_coding
description:
  Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.


ensembl_gene_id: CYB_2037
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: CYB_2038
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: CYB_2039
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: CYB_2043
symbol: cphB
gene_biotype: protein_coding
description:
  Cyanophycinase; Exopeptidase that catalyzes the hydrolytic cleavage of multi- L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) into aspartate-arginine dipeptides.


ensembl_gene_id: CYB_2044
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: CYB_2045
symbol: menD
gene_biotype: protein_coding
description:
  2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).


ensembl_gene_id: CYB_2047
symbol: rpe
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: CYB_2051
symbol: nnrE
gene_biotype: protein_coding
description:
  Carbohydrate kinase family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repa [...]


ensembl_gene_id: CYB_2055
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenol kinase, putative; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: CYB_2057
symbol: psbZ
gene_biotype: protein_coding
description:
  YCF9, conserved hypothetical protein; Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna; Belongs to the PsbZ family.


ensembl_gene_id: CYB_2059
symbol: CYB_2059
gene_biotype: protein_coding
description:
  Putative membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: CYB_2066
symbol: CYB_2066
gene_biotype: protein_coding
description:
  GAF/SpoIIE domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF07228.


ensembl_gene_id: CYB_2070
symbol: argH
gene_biotype: protein_coding
description:
  Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.


ensembl_gene_id: CYB_2075
symbol: CYB_2075
gene_biotype: protein_coding
description:
  Putative molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.


ensembl_gene_id: CYB_2077
symbol: ribAB
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.


ensembl_gene_id: CYB_2079
symbol: CYB_2079
gene_biotype: protein_coding
description:
  Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.


ensembl_gene_id: CYB_2082
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: CYB_2083
symbol: CYB_2083
gene_biotype: protein_coding
description:
  Hydrophobic amino acid ABC transporter (HAAT) family, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CYB_2084
symbol: CYB_2084
gene_biotype: protein_coding
description:
  Hydrophobic amino acid ABC transporter (HAAT) family, permease protein; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: CYB_2090
symbol: fabG
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: CYB_2091
symbol: ggt
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; Identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066.


ensembl_gene_id: CYB_2093
symbol: CYB_2093
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AG2426; match to protein family HMM PF05728.


ensembl_gene_id: CYB_2094
symbol: secG
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: CYB_2099
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: CYB_2101
symbol: CYB_2101
gene_biotype: protein_coding
description:
  HAD hydrolase, IIB family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: CYB_2102
symbol: CYB_2102
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AG1974; match to protein family HMM PF07466.


ensembl_gene_id: CYB_2104
symbol: CYB_2104
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: CYB_2107
symbol: chlM
gene_biotype: protein_coding
description:
  Magnesium protoporphyrin O-methyltransferase; Identified by match to protein family HMM PF07109; match to protein family HMM TIGR02021.


ensembl_gene_id: CYB_2110
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: CYB_2112
symbol: CYB_2112
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: CYB_2119
symbol: CYB_2119
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00252; Identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; Belongs to the UPF0102 family.


ensembl_gene_id: CYB_2120
symbol: CYB_2120
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC90934.1; match to protein family HMM PF05991.


ensembl_gene_id: CYB_2124
symbol: CYB_2124
gene_biotype: protein_coding
description:
  Cystine ABC transporter, periplasmic cystine-binding protein; Identified by similarity to SP:P39174; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: CYB_2125
symbol: CYB_2125
gene_biotype: protein_coding
description:
  Cystine ABC transporter, permease protein; Identified by similarity to SP:P42200; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: CYB_2127
symbol: CYB_2127
gene_biotype: protein_coding
description:
  Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01812.


ensembl_gene_id: CYB_2128
symbol: CYB_2128
gene_biotype: protein_coding
description:
  Beta-alanine--pyruvate transaminase; Identified by similarity to SP:P28269; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: CYB_2131
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: CYB_2132
symbol: def-1
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: CYB_2133
symbol: CYB_2133
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AE2202; match to protein family HMM PF04134.


ensembl_gene_id: CYB_2136
symbol: gvpG
gene_biotype: protein_coding
description:
  Gas vesicle protein G; Identified by similarity to GB:AAC38412.1; match to protein family HMM PF05120.


ensembl_gene_id: CYB_2139
symbol: CYB_2139
gene_biotype: protein_coding
description:
  Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.


ensembl_gene_id: CYB_2142
symbol: pilT-2
gene_biotype: protein_coding
description:
  Twitching motility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.


ensembl_gene_id: CYB_2143
symbol: pilB
gene_biotype: protein_coding
description:
  Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.


ensembl_gene_id: CYB_2144
symbol: CYB_2144
gene_biotype: protein_coding
description:
  Putative acetolactate synthase, catabolic; Identified by similarity to SP:Q04789; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.


ensembl_gene_id: CYB_2145
symbol: CYB_2145
gene_biotype: protein_coding
description:
  Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746.


ensembl_gene_id: CYB_2146
symbol: CYB_2146
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AD2247; match to protein family HMM PF07755.


ensembl_gene_id: CYB_2149
symbol: map-1
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: CYB_2150
symbol: CYB_2150
gene_biotype: protein_coding
description:
  Chloride transporter, chloride channel family; Identified by match to protein family HMM PF00571; match to protein family HMM PF00654.


ensembl_gene_id: CYB_2151
symbol: CYB_2151
gene_biotype: protein_coding
description:
  Base excision DNA repair protein, HhH-GPD family; Identified by match to protein family HMM PF00730.


ensembl_gene_id: CYB_2152
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: CYB_2153
symbol: CYB_2153
gene_biotype: protein_coding
description:
  BNR/Asp-box repeat protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.


ensembl_gene_id: CYB_2157
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: CYB_2158
symbol: treY
gene_biotype: protein_coding
description:
  Malto-oligosyltrehalose synthase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401.


ensembl_gene_id: CYB_2163
symbol: CYB_2163
gene_biotype: protein_coding
description:
  Sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.


ensembl_gene_id: CYB_2165
symbol: ldh
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.


ensembl_gene_id: CYB_2166
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: CYB_2168
symbol: CYB_2168
gene_biotype: protein_coding
description:
  DnaJ domain protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF00515; match to protein family HMM PF07719.


ensembl_gene_id: CYB_2169
symbol: glnH
gene_biotype: protein_coding
description:
  Polar amino acid ABC transporter (PAAT) family, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.


ensembl_gene_id: CYB_2170
symbol: CYB_2170
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00459; Belongs to the inositol monophosphatase superfamily.


ensembl_gene_id: CYB_2173
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: CYB_2174
symbol: CYB_2174
gene_biotype: protein_coding
description:
  ISSoc7, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.


ensembl_gene_id: CYB_2175
symbol: CYB_2175
gene_biotype: protein_coding
description:
  Glycolate oxidase, iron-sulfur subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.


ensembl_gene_id: CYB_2181
symbol: CYB_2181
gene_biotype: protein_coding
description:
  Putative long-chain-fatty-acid-CoA ligase; Identified by similarity to GB:CAE07184.1; match to protein family HMM PF00501.


ensembl_gene_id: CYB_2183
symbol: CYB_2183
gene_biotype: protein_coding
description:
  Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.


ensembl_gene_id: CYB_2184
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: CYB_2189
symbol: cobI
gene_biotype: protein_coding
description:
  Precorrin-2 C20-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01467; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: CYB_2193
symbol: chlB
gene_biotype: protein_coding
description:
  Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex.


ensembl_gene_id: CYB_2194
symbol: galE
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: CYB_2195
symbol: cutA
gene_biotype: protein_coding
description:
  Divalent-cation tolerance protein CutA; Identified by similarity to SP:P36654; match to protein family HMM PF03091.


ensembl_gene_id: CYB_2196
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: CYB_2199
symbol: pfkA
gene_biotype: protein_coding
description:
  Phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.


ensembl_gene_id: CYB_2200
symbol: CYB_2200
gene_biotype: protein_coding
description:
  Adenylate cyclase, putative; Identified by match to protein family HMM PF00211; match to protein family HMM PF00498.


ensembl_gene_id: CYB_2202
symbol: ribF
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.


ensembl_gene_id: CYB_2204
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: CYB_2206
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: CYB_2208
symbol: metH
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: CYB_2209
symbol: potC
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter, permease protein PotC; Identified by similarity to SP:P23859; match to protein family HMM PF00528.


ensembl_gene_id: CYB_2212
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: CYB_2214
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: CYB_2216
symbol: ycf3
gene_biotype: protein_coding
description:
  Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits; Belongs to the Ycf3 family.


ensembl_gene_id: CYB_2217
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: CYB_2222
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: CYB_2227
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: CYB_2229
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: CYB_2241
symbol: oxaA
gene_biotype: protein_coding
description:
  Inner membrane protein OxaA; Identified by similarity to SP:Q8DL96; match to protein family HMM PF02096.


ensembl_gene_id: CYB_2243
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: CYB_2245
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: CYB_2246
symbol: rimP
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: CYB_2251
symbol: CYB_2251
gene_biotype: protein_coding
description:
  Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209; match to protein family HMM PF05401.


ensembl_gene_id: CYB_2257
symbol: glpX
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase, class II; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.


ensembl_gene_id: CYB_2258
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: CYB_2260
symbol: typA
gene_biotype: protein_coding
description:
  GTP-binding protein TypA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394.


ensembl_gene_id: CYB_2262
symbol: cinA
gene_biotype: protein_coding
description:
  Competence/damage-inducible protein CinA; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.


ensembl_gene_id: CYB_2266
symbol: psaL
gene_biotype: protein_coding
description:
  Photosystem II protein, PsbB/PsbC family; Identified by match to protein family HMM PF00421; match to protein family HMM PF02605.


ensembl_gene_id: CYB_2267
symbol: CYB_2267
gene_biotype: protein_coding
description:
  Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.


ensembl_gene_id: CYB_2271
symbol: CYB_2271
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:AAN66535.1; match to protein family HMM PF06537.


ensembl_gene_id: CYB_2276
symbol: CYB_2276
gene_biotype: protein_coding
description:
  Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family.


ensembl_gene_id: CYB_2277
symbol: CYB_2277
gene_biotype: protein_coding
description:
  Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.


ensembl_gene_id: CYB_2278
symbol: CYB_2278
gene_biotype: protein_coding
description:
  VKORC1/thioredoxin domain protein; Thiol-disulfide oxidoreductase that catalyzes vitamin K- dependent disulfide bond formation in periplasmic target proteins. Belongs to the VKOR family.


ensembl_gene_id: CYB_2279
symbol: btpA
gene_biotype: protein_coding
description:
  Photosystem I biogenesis protein BtpA; Identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259.


ensembl_gene_id: CYB_2280
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: CYB_2283
symbol: CYB_2283
gene_biotype: protein_coding
description:
  Mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.


ensembl_gene_id: CYB_2287
symbol: CYB_2287
gene_biotype: protein_coding
description:
  Putative D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by match to protein family HMM PF02113.


ensembl_gene_id: CYB_2293
symbol: mltG
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00247; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: CYB_2294
symbol: yqeG
gene_biotype: protein_coding
description:
  Phosphatase, HAD superfamily, subfamily IIIA; Identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668.


ensembl_gene_id: CYB_2298
symbol: thrC-1
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: CYB_2299
symbol: CYB_2299
gene_biotype: protein_coding
description:
  Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.


ensembl_gene_id: CYB_2300
symbol: menA
gene_biotype: protein_coding
description:
  1,4-dihydroxy-2-naphthoate phytyltransferase; Involved in the synthesis of phylloquinone (vitamin K1). Catalyzes the transfer of a prenyl chain to 2-carboxy-1,4- naphthoquinone; Belongs to the MenA family. Type 2 subfamily.


ensembl_gene_id: CYB_2308
symbol: rpoZ
gene_biotype: protein_coding
description:
  Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: CYB_2309
symbol: CYB_2309
gene_biotype: protein_coding
description:
  Transporter, small conductance mechanosensitive ion channel (MscS) family; Identified by match to protein family HMM PF00924.


ensembl_gene_id: CYB_2310
symbol: cax
gene_biotype: protein_coding
description:
  Calcium/proton exchanger; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.


ensembl_gene_id: CYB_2315
symbol: CYB_2315
gene_biotype: protein_coding
description:
  Putative cysteine synthase B; Identified by similarity to SP:P16703; match to protein family HMM PF00291; match to protein family HMM TIGR01136.


ensembl_gene_id: CYB_2318
symbol: CYB_2318
gene_biotype: protein_coding
description:
  Haloacid dehalogenase, IA family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02252.


ensembl_gene_id: CYB_2328
symbol: CYB_2328
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032.


ensembl_gene_id: CYB_2332
symbol: ndhC
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.


ensembl_gene_id: CYB_2333
symbol: ndhK
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, K subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration; Belongs to the complex I 20 kDa subunit family.


ensembl_gene_id: CYB_2334
symbol: ndhJ
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, J subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.


ensembl_gene_id: CYB_2336
symbol: CYB_2336
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AF2225; match to protein family HMM PF02636.


ensembl_gene_id: CYB_2339
symbol: fabD
gene_biotype: protein_coding
description:
  Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.


ensembl_gene_id: CYB_2340
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: CYB_2341
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: CYB_2343
symbol: trpC
gene_biotype: protein_coding
description:
  Indole-3-glycerol phosphate synthase; Identified by match to protein family HMM PF00218; Belongs to the TrpC family.


ensembl_gene_id: CYB_2346
symbol: CYB_2346
gene_biotype: protein_coding
description:
  Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.


ensembl_gene_id: CYB_2347
symbol: cbiX
gene_biotype: protein_coding
description:
  Sirohydrochlorin cobaltochelatase; Identified by similarity to SP:Q55451; match to protein family HMM PF01903.


ensembl_gene_id: CYB_2350
symbol: CYB_2350
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.


ensembl_gene_id: CYB_2352
symbol: obg
gene_biotype: protein_coding
description:
  GTP-binding protein, GTP1/OBG family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: CYB_2358
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: CYB_2361
symbol: CYB_2361
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Identified by match to protein family HMM PF02310; match to protein family HMM PF04055.


ensembl_gene_id: CYB_2363
symbol: CYB_2363
gene_biotype: protein_coding
description:
  BolA protein; Identified by similarity to SP:P15298; match to protein family HMM PF01722; Belongs to the BolA/IbaG family.


ensembl_gene_id: CYB_2364
symbol: CYB_2364
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: CYB_2365
symbol: CYB_2365
gene_biotype: protein_coding
description:
  Transporter, arsenical resistance-3 (ACR3) family; Identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832.


ensembl_gene_id: CYB_2366
symbol: arsC
gene_biotype: protein_coding
description:
  Arsenate reductase; Identified by similarity to SP:P45947; similarity to PIR:A53641; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: CYB_2368
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: CYB_2369
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: CYB_2370
symbol: ureA
gene_biotype: protein_coding
description:
  Urease, gamma subunit; Identified by similarity to SP:P73796; match to protein family HMM PF00547; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family.


ensembl_gene_id: CYB_2373
symbol: mutS2
gene_biotype: protein_coding
description:
  MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: CYB_2375
symbol: ndhL
gene_biotype: protein_coding
description:
  Hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.


ensembl_gene_id: CYB_2383
symbol: CYB_2383
gene_biotype: protein_coding
description:
  Hydrophobic amino acid uptake transporter (HAAT) ABC transporter family, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_2384
symbol: CYB_2384
gene_biotype: protein_coding
description:
  Pyruvate kinase barrel domain protein; Identified by match to protein family HMM PF00224; Belongs to the pyruvate kinase family.


ensembl_gene_id: CYB_2388
symbol: CYB_2388
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM TIGR01484; match to protein family HMM TIGR02461; match to protein family HMM TIGR02463.


ensembl_gene_id: CYB_2394
symbol: thiS
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683.


ensembl_gene_id: CYB_2395
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: CYB_2400
symbol: CYB_2400
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC36155.1; match to protein family HMM PF00005.


ensembl_gene_id: CYB_2402
symbol: CYB_2402
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: CYB_2403
symbol: CYB_2403
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01209; match to protein family HMM PF02353; Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family.


ensembl_gene_id: CYB_2404
symbol: CYB_2404
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase, family 4; Identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758.


ensembl_gene_id: CYB_2416
symbol: CYB_2416
gene_biotype: protein_coding
description:
  Putative helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM PF08148.


ensembl_gene_id: CYB_2417
symbol: trpG
gene_biotype: protein_coding
description:
  Anthranilate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566.


ensembl_gene_id: CYB_2420
symbol: CYB_2420
gene_biotype: protein_coding
description:
  Deoxyhypusine synthase family protein; Hypusine is a modified amino acid found in eukarya and archaea, but as yet unknown in prokarya; identified by match to protein family HMM PF01916.


ensembl_gene_id: CYB_2421
symbol: CYB_2421
gene_biotype: protein_coding
description:
  Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.


ensembl_gene_id: CYB_2424
symbol: CYB_2424
gene_biotype: protein_coding
description:
  CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595.


ensembl_gene_id: CYB_2425
symbol: panC/cmk
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase/cytidylate kinase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. In the C-terminal section; belongs to the cytidylate kinase family. Type 1 subfamily.


ensembl_gene_id: CYB_2426
symbol: petG
gene_biotype: protein_coding
description:
  Cytochrome b6-f complex, subunit V; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. PetG is required for either the stability or assembly of the cytochrome b6-f complex.


ensembl_gene_id: CYB_2427
symbol: CYB_2427
gene_biotype: protein_coding
description:
  DnaJ domain protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF07719.


ensembl_gene_id: CYB_2428
symbol: menE
gene_biotype: protein_coding
description:
  O-succinylbenzoate--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923.


ensembl_gene_id: CYB_2433
symbol: pyrR
gene_biotype: protein_coding
description:
  pyrR bifunctional protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.


ensembl_gene_id: CYB_2436
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: CYB_2437
symbol: rpoC1
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: CYB_2438
symbol: rpoC2
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta'' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.


ensembl_gene_id: CYB_2439
symbol: CYB_2439
gene_biotype: protein_coding
description:
  Transcriptional activator TenA, putative; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway; Belongs to the TenA family.


ensembl_gene_id: CYB_2446
symbol: CYB_2446
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, truncation; Identified by match to protein family HMM PF00005.


ensembl_gene_id: CYB_2447
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: CYB_2449
symbol: tatA-2
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: CYB_2451
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: CYB_2452
symbol: CYB_2452
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01777.


ensembl_gene_id: CYB_2456
symbol: hemB
gene_biotype: protein_coding
description:
  Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.


ensembl_gene_id: CYB_2458
symbol: psbI
gene_biotype: protein_coding
description:
  Photosystem II reaction center protein PsbI; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.


ensembl_gene_id: CYB_2466
symbol: CYB_2466
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AC2314; match to protein family HMM PF03745.


ensembl_gene_id: CYB_2470
symbol: CYB_2470
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AB1913; match to protein family HMM PF03364.


ensembl_gene_id: CYB_2477
symbol: ugpB
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547.


ensembl_gene_id: CYB_2478
symbol: upgA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10905; match to protein family HMM PF00528.


ensembl_gene_id: CYB_2480
symbol: nadB
gene_biotype: protein_coding
description:
  L-aspartate oxidase; Identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551.


ensembl_gene_id: CYB_2481
symbol: gnd
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: CYB_2482
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: CYB_2483
symbol: nadC
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide pyrophosphorylase; Identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; Belongs to the NadC/ModD family.


ensembl_gene_id: CYB_2488
symbol: CYB_2488
gene_biotype: protein_coding
description:
  TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.


ensembl_gene_id: CYB_2489
symbol: CYB_2489
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, group 3; Identified by similarity to GB:CAA71068.1; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family.


ensembl_gene_id: CYB_2492
symbol: mreB
gene_biotype: protein_coding
description:
  Rod shape-determining protein; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.


ensembl_gene_id: CYB_2496
symbol: CYB_2496
gene_biotype: protein_coding
description:
  Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: CYB_2498
symbol: cobD-2
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: CYB_2499
symbol: CYB_2499
gene_biotype: protein_coding
description:
  Transcriptional regulator, putative; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.


ensembl_gene_id: CYB_2500
symbol: rsmI
gene_biotype: protein_coding
description:
  Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: CYB_2502
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: CYB_2505
symbol: CYB_2505
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; Belongs to the MlaE permease family.


ensembl_gene_id: CYB_2506
symbol: CYB_2506
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; Identified by match to protein family HMM PF00160.


ensembl_gene_id: CYB_2507
symbol: CYB_2507
gene_biotype: protein_coding
description:
  Succinate dehydrogenase/fumarate reductase, iron-sulfur protein; Identified by match to protein family HMM TIGR00384.


ensembl_gene_id: CYB_2511
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: CYB_2514
symbol: sodB
gene_biotype: protein_coding
description:
  Fe-superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: CYB_2515
symbol: CYB_2515
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; Identified by similarity to SP:P54738; match to protein family HMM PF00069.


ensembl_gene_id: CYB_2516
symbol: napA
gene_biotype: protein_coding
description:
  Transporter, monovalent cation:proton antiporter-2 (CPA2) family; Identified by match to protein family HMM PF00582; match to protein family HMM PF00999.


ensembl_gene_id: CYB_2517
symbol: glyS
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211.


ensembl_gene_id: CYB_2518
symbol: CYB_2518
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01636; match to protein family HMM PF03881; Belongs to the fructosamine kinase family.


ensembl_gene_id: CYB_2522
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857.


ensembl_gene_id: CYB_2524
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: CYB_2525
symbol: zam
gene_biotype: protein_coding
description:
  Acetazolamide conferring resistance protein Zam; Identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; Belongs to the RNR ribonuclease family.


ensembl_gene_id: CYB_2526
symbol: phoU
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: CYB_2529
symbol: treZ
gene_biotype: protein_coding
description:
  Malto-oligosyltrehalose trehalohydrolase; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402.


ensembl_gene_id: CYB_2531
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: CYB_2532
symbol: CYB_2532
gene_biotype: protein_coding
description:
  Prolyl oligopeptidase; Identified by similarity to SP:Q06903; match to protein family HMM PF00326; match to protein family HMM PF02897.


ensembl_gene_id: CYB_2533
symbol: ntcA
gene_biotype: protein_coding
description:
  Nitrogen-responsive regulatory protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.


ensembl_gene_id: CYB_2537
symbol: psbV
gene_biotype: protein_coding
description:
  Cytochrome c550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.


ensembl_gene_id: CYB_2540
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: CYB_2541
symbol: yfiA
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: CYB_2542
symbol: CYB_2542
gene_biotype: protein_coding
description:
  Aluminium resistance protein; Identified by similarity to GB:AAB99854.1; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM PF06838.


ensembl_gene_id: CYB_2543
symbol: CYB_2543
gene_biotype: protein_coding
description:
  Bacterial pre-peptidase C-terminal domain protein; Identified by match to protein family HMM PF04151.


ensembl_gene_id: CYB_2545
symbol: hypA
gene_biotype: protein_coding
description:
  Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: CYB_2548
symbol: argJ
gene_biotype: protein_coding
description:
  Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: CYB_2550
symbol: CYB_2550
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Similar to permease members of TCDB 3.A.1.17 The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16) and 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family; identified by match to protein family HMM PF00528.


ensembl_gene_id: CYB_2558
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: CYB_2560
symbol: CYB_2560
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat protein; Identified by similarity to GB:BAC08823.1; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.


ensembl_gene_id: CYB_2564
symbol: CYB_2564
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD C-terminal domain protein; Identified by match to protein family HMM PF01872.


ensembl_gene_id: CYB_2567
symbol: CYB_2567
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF02277; match to protein family HMM TIGR00303; Belongs to the UPF0284 family.


ensembl_gene_id: CYB_2568
symbol: clpS-2
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein clpS; Identified by match to protein family HMM PF02617; Belongs to the ClpS family.


ensembl_gene_id: CYB_2576
symbol: CYB_2576
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by match to protein family HMM PF01940; match to protein family HMM TIGR00297.


ensembl_gene_id: CYB_2577
symbol: cbbS
gene_biotype: protein_coding
description:
  Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.


ensembl_gene_id: CYB_2579
symbol: cbbL
gene_biotype: protein_coding
description:
  Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.


ensembl_gene_id: CYB_2586
symbol: cobB
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: CYB_2587
symbol: CYB_2587
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC52503.1; match to protein family HMM PF07958.


ensembl_gene_id: CYB_2588
symbol: cobO-2
gene_biotype: protein_coding
description:
  cob(I)alamin adenosyltransferase; Identified by match to protein family HMM PF02572; match to protein family HMM TIGR00708.


ensembl_gene_id: CYB_2590
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: CYB_2593
symbol: CYB_2593
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis domain protein; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: CYB_2597
symbol: rplC
gene_biotype: protein_coding
description:
  Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: CYB_2598
symbol: rplD
gene_biotype: protein_coding
description:
  Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).


ensembl_gene_id: CYB_2599
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: CYB_2600
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: CYB_2601
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: CYB_2602
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).


ensembl_gene_id: CYB_2603
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: CYB_2604
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: CYB_2605
symbol: rpmC
gene_biotype: protein_coding
description:
  Ribosomal protein L29; Identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: CYB_2606
symbol: rpsQ
gene_biotype: protein_coding
description:
  Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: CYB_2607
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: CYB_2608
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: CYB_2609
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: CYB_2610
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: CYB_2611
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: CYB_2612
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: CYB_2613
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: CYB_2614
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: CYB_2615
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: CYB_2616
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: CYB_2618
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: CYB_2624
symbol: CYB_2624
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC88250.1; match to protein family HMM PF05685.


ensembl_gene_id: CYB_2628
symbol: msrB
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: CYB_2629
symbol: CYB_2629
gene_biotype: protein_coding
description:
  Transporter, lead (Pb2+) uptake porter (PbrT) family; Identified by similarity to GB:CAC28871.1; match to protein family HMM PF03239.


ensembl_gene_id: CYB_2632
symbol: CYB_2632
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC91118.1; Belongs to the UPF0367 family.


ensembl_gene_id: CYB_2635
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: CYB_2643
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: CYB_2647
symbol: CYB_2647
gene_biotype: protein_coding
description:
  Aminomethyltransferase, putative; Identified by match to protein family HMM PF01571; Belongs to the GcvT family.


ensembl_gene_id: CYB_2652
symbol: CYB_2652
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.


ensembl_gene_id: CYB_2656
symbol: CYB_2656
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.


ensembl_gene_id: CYB_2659
symbol: CYB_2659
gene_biotype: protein_coding
description:
  Amidohydrolase, AtzE family; Identified by match to protein family HMM PF01425; match to protein family HMM TIGR02715.


ensembl_gene_id: CYB_2664
symbol: CYB_2664
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AH2295; match to protein family HMM PF05430.


ensembl_gene_id: CYB_2665
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: CYB_2666
symbol: CYB_2666
gene_biotype: protein_coding
description:
  Anti-anti-sigma factor; Identified by similarity to SP:Q9WVX8; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: CYB_2668
symbol: CYB_2668
gene_biotype: protein_coding
description:
  TrkA domain protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.


ensembl_gene_id: CYB_2669
symbol: CYB_2669
gene_biotype: protein_coding
description:
  Ferric iron uptake ABC transporter (FeT) family, periplasmic substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.


ensembl_gene_id: CYB_2671
symbol: CYB_2671
gene_biotype: protein_coding
description:
  Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.


ensembl_gene_id: CYB_2672
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: CYB_2673
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: CYB_2674
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: CYB_2675
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: CYB_2676
symbol: atpG-2
gene_biotype: protein_coding
description:
  ATP synthase F0, B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: CYB_2677
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: CYB_2679
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: CYB_2684
symbol: gpmI
gene_biotype: protein_coding
description:
  2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: CYB_2687
symbol: trmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: CYB_2688
symbol: glgP
gene_biotype: protein_coding
description:
  Alpha-glucan phosphorylases; Identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094.


ensembl_gene_id: CYB_2691
symbol: fni
gene_biotype: protein_coding
description:
  Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).


ensembl_gene_id: CYB_2696
symbol: CYB_2696
gene_biotype: protein_coding
description:
  ISSoc12, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282.


ensembl_gene_id: CYB_2697
symbol: coxB
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: CYB_2698
symbol: ctaD
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: CYB_2699
symbol: holA
gene_biotype: protein_coding
description:
  DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.


ensembl_gene_id: CYB_2703
symbol: CYB_2703
gene_biotype: protein_coding
description:
  Putative inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein; Identified by match to protein family HMM PF04932.


ensembl_gene_id: CYB_2704
symbol: glnB
gene_biotype: protein_coding
description:
  Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; Belongs to the P(II) protein family.


ensembl_gene_id: CYB_2705
symbol: amt
gene_biotype: protein_coding
description:
  Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.


ensembl_gene_id: CYB_2706
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: CYB_2708
symbol: cobM
gene_biotype: protein_coding
description:
  Precorrin-4 C11-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: CYB_2710
symbol: rhdA
gene_biotype: protein_coding
description:
  Thiosulfate sulfurtransferase; Identified by similarity to SP:P52197; match to protein family HMM PF00581.


ensembl_gene_id: CYB_2711
symbol: CYB_2711
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulphide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.


ensembl_gene_id: CYB_2712
symbol: CYB_2712
gene_biotype: protein_coding
description:
  SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.


ensembl_gene_id: CYB_2715
symbol: CYB_2715
gene_biotype: protein_coding
description:
  D12 class N6 adenine-specific DNA methyltransferase; Identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571.


ensembl_gene_id: CYB_2718
symbol: CYB_2718
gene_biotype: protein_coding
description:
  Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.


ensembl_gene_id: CYB_2719
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.


ensembl_gene_id: CYB_2725
symbol: CYB_2725
gene_biotype: protein_coding
description:
  Iron chelate ABC transporter (FeCT) family, periplasmic substrate-binding protein; Identified by match to protein family HMM PF01497.


ensembl_gene_id: CYB_2726
symbol: CYB_2726
gene_biotype: protein_coding
description:
  TonB family protein; Identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352.


ensembl_gene_id: CYB_2727
symbol: CYB_2727
gene_biotype: protein_coding
description:
  Transporter, TonB-dependent heme/hemoglobin receptor family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786.


ensembl_gene_id: CYB_2728
symbol: CYB_2728
gene_biotype: protein_coding
description:
  Iron chelate ABC transporter (FeCT) family, ATP-binding protein; Identified by similarity to SP:P49938; match to protein family HMM PF00005.


ensembl_gene_id: CYB_2729
symbol: CYB_2729
gene_biotype: protein_coding
description:
  Iron chelate uptake ABC transporter (FeCT) family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: CYB_2731
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: CYB_2733
symbol: mviN
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: CYB_2736
symbol: cpcE-2
gene_biotype: protein_coding
description:
  Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.


ensembl_gene_id: CYB_2737
symbol: cpcC
gene_biotype: protein_coding
description:
  Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.


ensembl_gene_id: CYB_2738
symbol: cpcA-2
gene_biotype: protein_coding
description:
  Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.


ensembl_gene_id: CYB_2740
symbol: cpcB-2
gene_biotype: protein_coding
description:
  Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.


ensembl_gene_id: CYB_2751
symbol: CYB_2751
gene_biotype: protein_coding
description:
  Putative methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF01590.


ensembl_gene_id: CYB_2752
symbol: CYB_2752
gene_biotype: protein_coding
description:
  Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.


ensembl_gene_id: CYB_2755
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: CYB_2756
symbol: CYB_2756
gene_biotype: protein_coding
description:
  Phospholipase D/competence protein ComEA helix-hairpin-helix domain protein; Identified by match to protein family HMM PF00614; match to protein family HMM PF00633; match to protein family HMM TIGR00426.


ensembl_gene_id: CYB_2759
symbol: CYB_2759
gene_biotype: protein_coding
description:
  GTP-binding domain protein; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231.


ensembl_gene_id: CYB_2760
symbol: CYB_2760
gene_biotype: protein_coding
description:
  Transporter, putative bacteriochlorophyll delivery (BCD) family; Identified by similarity to SP:P23462; match to protein family HMM PF03209; match to protein family HMM PF07690.


ensembl_gene_id: CYB_2767
symbol: cbiD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.


ensembl_gene_id: CYB_2775
symbol: sbcD
gene_biotype: protein_coding
description:
  Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: CYB_2780
symbol: pstS-3
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, periplasmic phosphate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; Belongs to the PstS family.


ensembl_gene_id: CYB_2783
symbol: trmJ
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: CYB_2785
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: CYB_2786
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: CYB_2787
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: CYB_2789
symbol: lpxB
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: CYB_2794
symbol: CYB_2794
gene_biotype: protein_coding
description:
  Putative copper methylamine oxidase; Identified by similarity to SP:Q07123; match to protein family HMM PF01179; match to protein family HMM PF02727; match to protein family HMM PF02728.


ensembl_gene_id: CYB_2795
symbol: CYB_2795
gene_biotype: protein_coding
description:
  Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.


ensembl_gene_id: CYB_2799
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: CYB_2800
symbol: CYB_2800
gene_biotype: protein_coding
description:
  FG-GAP repeat/ASPIC/UnbV domain protein; Identified by match to protein family HMM PF01839; match to protein family HMM PF07593.


ensembl_gene_id: CYB_2801
symbol: CYB_2801
gene_biotype: protein_coding
description:
  Transporter, monovalent cation:proton antiporter-2 (CPA2) family; Identified by match to protein family HMM PF00999; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: CYB_2804
symbol: glnA-2
gene_biotype: protein_coding
description:
  Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.


ensembl_gene_id: CYB_2806
symbol: trxB
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00085; match to protein family HMM PF07992; match to protein family HMM TIGR01292.


ensembl_gene_id: CYB_2807
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: CYB_2808
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: CYB_2810
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: CYB_2813
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: CYB_2817
symbol: CYB_2817
gene_biotype: protein_coding
description:
  DNA-3-methyladenine glycosylase; Identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567; Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: CYB_2820
symbol: thrC-2
gene_biotype: protein_coding
description:
  Threonine synthase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260.


ensembl_gene_id: CYB_2822
symbol: gcp
gene_biotype: protein_coding
description:
  O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: CYB_2823
symbol: gidA
gene_biotype: protein_coding
description:
  Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: CYB_2825
symbol: psaJ
gene_biotype: protein_coding
description:
  Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.


ensembl_gene_id: CYB_2828
symbol: mrnC
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.


ensembl_gene_id: CYB_2829
symbol: CYB_2829
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: CYB_2837
symbol: hemF
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase, aerobic; Involved in the heme and chlorophyll biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX.


ensembl_gene_id: CYB_2844
symbol: CYB_2844
gene_biotype: protein_coding
description:
  Hydrogenase accessory protein HypB, interruption-C; Identified by similarity to SP:Q43949; match to protein family HMM PF02492; match to protein family HMM TIGR00073.


ensembl_gene_id: CYB_2845
symbol: CYB_2845
gene_biotype: protein_coding
description:
  ATPase, AAA family; Identified by match to protein family HMM PF00004; Belongs to the AAA ATPase family.


ensembl_gene_id: CYB_2846
symbol: glcD
gene_biotype: protein_coding
description:
  Glycolate oxidase, subunit GlcD; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387.


ensembl_gene_id: CYB_2848
symbol: rpmI
gene_biotype: protein_coding
description:
  Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: CYB_2849
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: CYB_2850
symbol: CYB_2850
gene_biotype: protein_coding
description:
  Amino acid transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: CYB_2851
symbol: purH
gene_biotype: protein_coding
description:
  Bifunctional purine biosynthesis protein PurH; Identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355.


ensembl_gene_id: CYB_2852
symbol: cysE
gene_biotype: protein_coding
description:
  Serine O-acetyltransferase; Identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172.


ensembl_gene_id: CYB_2854
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family.


ensembl_gene_id: CYB_2857
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: CYB_2860
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: CYB_2862
symbol: CYB_2862
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:S74601; match to protein family HMM PF04168.


ensembl_gene_id: CYB_2864
symbol: CYB_2864
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC09523.1; match to protein family HMM PF04169; match to protein family HMM PF04174.


ensembl_gene_id: CYB_2867
symbol: CYB_2867
gene_biotype: protein_coding
description:
  X-Pro dipeptidyl-peptidase (S15 family); Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.


ensembl_gene_id: CYB_2874
symbol: CYB_2874
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993.


ensembl_gene_id: CYB_2880
symbol: CYB_2880
gene_biotype: protein_coding
description:
  Putative peptidase TldD; Member of MEROPS family U62, which contains contains microcin-processing peptidases of unknown catalytic mechanism; identified by match to protein family HMM PF01523.


ensembl_gene_id: CYB_2881
symbol: leuS
gene_biotype: protein_coding
description:
  leucyl-tRNA synthetase; Identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: CYB_2882
symbol: petH
gene_biotype: protein_coding
description:
  ferredoxin--NADP reductase; Identified by similarity to SP:P00454; match to protein family HMM PF00175.


ensembl_gene_id: CYB_2889
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: CYB_2891
symbol: ubiD
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; Belongs to the UbiD family.


ensembl_gene_id: CYB_2892
symbol: macB
gene_biotype: protein_coding
description:
  Macrolide ABC transporter, permease protein; Identified by similarity to SP:P75831; match to protein family HMM PF02687.


ensembl_gene_id: CYB_2893
symbol: CYB_2893
gene_biotype: protein_coding
description:
  Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10906; match to protein family HMM PF00528.


ensembl_gene_id: CYB_2894
symbol: CYB_2894
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: CYB_2895
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: CYB_2897
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: CYB_2898
symbol: CYB_2898
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: CYB_2912
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: CYB_2913
symbol: CYB_2913
gene_biotype: protein_coding
description:
  Putative homoserine O-acetyltransferase; Identified by similarity to SP:P45131; match to protein family HMM PF00561; Belongs to the AB hydrolase superfamily. MetX family.


ensembl_gene_id: CYB_2916
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: CYB_2920
symbol: folK
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498.


ensembl_gene_id: CYB_2922
symbol: folP
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: CYB_2924
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: CYB_2926
symbol: CYB_2926
gene_biotype: protein_coding
description:
  Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.


ensembl_gene_id: CYB_2931
symbol: CYB_2931
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AE2462; match to protein family HMM PF04286.


ensembl_gene_id: CYB_2932
symbol: CYB_2932
gene_biotype: protein_coding
description:
  2`,3`-cyclic-nucleotide 2`-phosphodiesterase, putative; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: CYB_2933
symbol: grpE
gene_biotype: protein_coding
description:
  Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...]


ensembl_gene_id: CYB_2935
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: CYB_2936
symbol: CYB_2936
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to GB:BAC08540.1; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: CYB_2937
symbol: rsgA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: CYB_2939
symbol: CYB_2939
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Identified by similarity to PIR:AF2412; match to protein family HMM PF05685.


ensembl_gene_id: CYB_2940
symbol: smc
gene_biotype: protein_coding
description:
  Putative chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: CYB_2941
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: CYB_2942
symbol: rpmH
gene_biotype: protein_coding
description:
  Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.


