# geneInfo

ensembl_gene_id: HMPREF7215_0006
symbol: nifJ
gene_biotype: protein_coding
description:
  Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.


ensembl_gene_id: HMPREF7215_0013
symbol: EFB89520.1
gene_biotype: protein_coding
description:
  Putative phosphate transport system regulatory protein PhoU; Identified by match to protein family HMM PF01895.


ensembl_gene_id: HMPREF7215_0014
symbol: EFB89521.1
gene_biotype: protein_coding
description:
  Peptidase, M23 family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.


ensembl_gene_id: HMPREF7215_0019
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: HMPREF7215_0020
symbol: rnj
gene_biotype: protein_coding
description:
  Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: HMPREF7215_0021
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl pyrophosphate phosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: HMPREF7215_0022
symbol: maf
gene_biotype: protein_coding
description:
  Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: HMPREF7215_0024
symbol: EFB89531.1
gene_biotype: protein_coding
description:
  Putative polysaccharide pyruvyl transferase CsaB; Identified by match to protein family HMM PF04230.


ensembl_gene_id: HMPREF7215_0026
symbol: EFB89533.1
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: HMPREF7215_0028
symbol: EFB89535.1
gene_biotype: protein_coding
description:
  Peptidase, S41 family; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.


ensembl_gene_id: HMPREF7215_0030
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: HMPREF7215_0031
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: HMPREF7215_0032
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02843; match to protein family HMM PF08442; match to protein family HMM TIGR00877.


ensembl_gene_id: HMPREF7215_0033
symbol: EFB90614.1
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02844.


ensembl_gene_id: HMPREF7215_0034
symbol: purH
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355.


ensembl_gene_id: HMPREF7215_0035
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: HMPREF7215_0036
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878.


ensembl_gene_id: HMPREF7215_0038
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: HMPREF7215_0039
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: HMPREF7215_0040
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS protein; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought [...]


ensembl_gene_id: HMPREF7215_0042
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: HMPREF7215_0043
symbol: EFB90624.1
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: HMPREF7215_0044
symbol: EFB90625.1
gene_biotype: protein_coding
description:
  Putative radical SAM protein YgiQ; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.


ensembl_gene_id: HMPREF7215_0046
symbol: yedF
gene_biotype: protein_coding
description:
  Selenium metabolism protein YedF; Identified by match to protein family HMM TIGR03527; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: HMPREF7215_0047
symbol: selA
gene_biotype: protein_coding
description:
  L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.


ensembl_gene_id: HMPREF7215_0048
symbol: selB
gene_biotype: protein_coding
description:
  Selenocysteine-specific translation elongation factor; Identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475.


ensembl_gene_id: HMPREF7215_0049
symbol: ispE
gene_biotype: protein_coding
description:
  Putative 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: HMPREF7215_0058
symbol: EFB90637.1
gene_biotype: protein_coding
description:
  FCD domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.


ensembl_gene_id: HMPREF7215_0059
symbol: acoA
gene_biotype: protein_coding
description:
  TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; Identified by match to protein family HMM PF00676.


ensembl_gene_id: HMPREF7215_0062
symbol: EFB90641.1
gene_biotype: protein_coding
description:
  TRAP transporter solute receptor, DctP family; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787.


ensembl_gene_id: HMPREF7215_0063
symbol: EFB90642.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctQ-like membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04290.


ensembl_gene_id: HMPREF7215_0064
symbol: EFB90643.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.


ensembl_gene_id: HMPREF7215_0065
symbol: EFB90644.1
gene_biotype: protein_coding
description:
  Putative pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; Identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817.


ensembl_gene_id: HMPREF7215_0066
symbol: lpdA
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: HMPREF7215_0067
symbol: EFB90646.1
gene_biotype: protein_coding
description:
  Lipoyltransferase and lipoate-protein ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545.


ensembl_gene_id: HMPREF7215_0069
symbol: EFB90648.1
gene_biotype: protein_coding
description:
  Hexose kinase, 1-phosphofructokinase family; Identified by match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: HMPREF7215_0071
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: HMPREF7215_0072
symbol: dnaE
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594.


ensembl_gene_id: HMPREF7215_0073
symbol: pyk
gene_biotype: protein_coding
description:
  Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.


ensembl_gene_id: HMPREF7215_0074
symbol: dacA
gene_biotype: protein_coding
description:
  TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.


ensembl_gene_id: HMPREF7215_0076
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: HMPREF7215_0078
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: HMPREF7215_0080
symbol: EFB90658.1
gene_biotype: protein_coding
description:
  Chromate transport protein; Identified by match to protein family HMM PF02417; overlaps another CDS with the same product name.


ensembl_gene_id: HMPREF7215_0081
symbol: EFB90659.1
gene_biotype: protein_coding
description:
  Chromate transport protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02417.


ensembl_gene_id: HMPREF7215_0083
symbol: fabHA
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase III; Identified by match to protein family HMM PF08541; match to protein family HMM PF08545.


ensembl_gene_id: HMPREF7215_0086
symbol: gcdB
gene_biotype: protein_coding
description:
  glutaconyl-CoA decarboxylase subunit beta; Identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109.


ensembl_gene_id: HMPREF7215_0089
symbol: rnhA
gene_biotype: protein_coding
description:
  Ribonuclease HI; Identified by match to protein family HMM PF00075; match to protein family HMM PF04434.


ensembl_gene_id: HMPREF7215_0094
symbol: EFB90673.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF7215_0096
symbol: EFB90674.1
gene_biotype: protein_coding
description:
  YbaK/proline--tRNA ligase associated domain protein; Identified by match to protein family HMM PF04073.


ensembl_gene_id: HMPREF7215_0097
symbol: EFB90675.1
gene_biotype: protein_coding
description:
  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.


ensembl_gene_id: HMPREF7215_0103
symbol: EFB90797.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: HMPREF7215_0105
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: HMPREF7215_0107
symbol: tmcAL
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.


ensembl_gene_id: HMPREF7215_0108
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: HMPREF7215_0109
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: HMPREF7215_0111
symbol: rpmF
gene_biotype: protein_coding
description:
  Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: HMPREF7215_0113
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: HMPREF7215_0114
symbol: EFB90808.1
gene_biotype: protein_coding
description:
  Putative enoyl-[acyl-carrier-protein] reductase II; Identified by match to protein family HMM PF03060.


ensembl_gene_id: HMPREF7215_0115
symbol: fabD
gene_biotype: protein_coding
description:
  [acyl-carrier-protein] S-malonyltransferase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.


ensembl_gene_id: HMPREF7215_0116
symbol: fabG
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: HMPREF7215_0118
symbol: fabF
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: HMPREF7215_0119
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: HMPREF7215_0120
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: HMPREF7215_0121
symbol: hpt
gene_biotype: protein_coding
description:
  Hypoxanthine phosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: HMPREF7215_0122
symbol: hflB
gene_biotype: protein_coding
description:
  ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: HMPREF7215_0123
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: HMPREF7215_0124
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: HMPREF7215_0125
symbol: EFB89364.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 3; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: HMPREF7215_0126
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: HMPREF7215_0127
symbol: msrB
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: HMPREF7215_0130
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-[acyl-carrier-protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: HMPREF7215_0131
symbol: nnrD
gene_biotype: protein_coding
description:
  YjeF domain protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]


ensembl_gene_id: HMPREF7215_0132
symbol: EFB89369.1
gene_biotype: protein_coding
description:
  Hydrolase, P-loop family; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150.


ensembl_gene_id: HMPREF7215_0133
symbol: yeaZ
gene_biotype: protein_coding
description:
  Universal bacterial protein YeaZ; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR03725.


ensembl_gene_id: HMPREF7215_0135
symbol: EFB89372.1
gene_biotype: protein_coding
description:
  2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Identified by match to protein family HMM PF01855.


ensembl_gene_id: HMPREF7215_0136
symbol: orB
gene_biotype: protein_coding
description:
  2-oxoglutarate ferredoxin oxidoreductase subunit beta; Identified by match to protein family HMM PF02775.


ensembl_gene_id: HMPREF7215_0137
symbol: EFB89374.1
gene_biotype: protein_coding
description:
  2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit; Identified by match to protein family HMM PF01558.


ensembl_gene_id: HMPREF7215_0139
symbol: rumA
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: HMPREF7215_0141
symbol: EFB89378.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.


ensembl_gene_id: HMPREF7215_0151
symbol: gltA
gene_biotype: protein_coding
description:
  Glutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.


ensembl_gene_id: HMPREF7215_0152
symbol: gltD
gene_biotype: protein_coding
description:
  Oxidoreductase NAD-binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00175.


ensembl_gene_id: HMPREF7215_0158
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF7215_0160
symbol: EFB89396.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family, C-terminal domain protein; Identified by match to protein family HMM PF01614; match to protein family HMM PF09339.


ensembl_gene_id: HMPREF7215_0163
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: HMPREF7215_0168
symbol: mce
gene_biotype: protein_coding
description:
  methylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081.


ensembl_gene_id: HMPREF7215_0173
symbol: agcS
gene_biotype: protein_coding
description:
  Amino acid carrier protein; Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.


ensembl_gene_id: HMPREF7215_0175
symbol: EFB89409.1
gene_biotype: protein_coding
description:
  Hep/Hag repeat protein; Identified by match to protein family HMM PF05658; match to protein family HMM PF05662.


ensembl_gene_id: HMPREF7215_0178
symbol: EFB89412.1
gene_biotype: protein_coding
description:
  Peptidase Do; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037.


ensembl_gene_id: HMPREF7215_0185
symbol: rph
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: HMPREF7215_0186
symbol: rdgB
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: HMPREF7215_0187
symbol: secG
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: HMPREF7215_0188
symbol: EFB89421.1
gene_biotype: protein_coding
description:
  Putative quinolinate phosphoribosyl transferase, C-terminal domain protein; Identified by match to protein family HMM PF01729; match to protein family HMM PF02749; Belongs to the NAPRTase family.


ensembl_gene_id: HMPREF7215_0189
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: HMPREF7215_0190
symbol: rpsI
gene_biotype: protein_coding
description:
  Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: HMPREF7215_0194
symbol: hypA
gene_biotype: protein_coding
description:
  Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: HMPREF7215_0195
symbol: hypB
gene_biotype: protein_coding
description:
  Hydrogenase accessory protein HypB; Identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073.


ensembl_gene_id: HMPREF7215_0197
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: HMPREF7215_0207
symbol: EFB89439.1
gene_biotype: protein_coding
description:
  Tex-like protein N-terminal domain protein; Identified by match to protein family HMM PF00575; match to protein family HMM PF09371.


ensembl_gene_id: HMPREF7215_0208
symbol: EFB89440.1
gene_biotype: protein_coding
description:
  TRAP transporter, 4TM/12TM fusion protein; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR02123.


ensembl_gene_id: HMPREF7215_0211
symbol: EFB89443.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.


ensembl_gene_id: HMPREF7215_0214
symbol: EFB89446.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: HMPREF7215_0216
symbol: EFB89448.1
gene_biotype: protein_coding
description:
  Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326; match to protein family HMM PF07676.


ensembl_gene_id: HMPREF7215_0219
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: HMPREF7215_0220
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: HMPREF7215_0222
symbol: pth
gene_biotype: protein_coding
description:
  aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: HMPREF7215_0223
symbol: mfd
gene_biotype: protein_coding
description:
  TRCF domain protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: HMPREF7215_0225
symbol: EFB89457.1
gene_biotype: protein_coding
description:
  Conserved carboxylase domain protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF02436.


ensembl_gene_id: HMPREF7215_0227
symbol: EFB89459.1
gene_biotype: protein_coding
description:
  HDIG domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277.


ensembl_gene_id: HMPREF7215_0228
symbol: ybeY
gene_biotype: protein_coding
description:
  Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: HMPREF7215_0229
symbol: EFB89461.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.


ensembl_gene_id: HMPREF7215_0231
symbol: era
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: HMPREF7215_0233
symbol: glyQ
gene_biotype: protein_coding
description:
  glycine--tRNA ligase, alpha subunit; Identified by match to protein family HMM PF02091; match to protein family HMM TIGR00388.


ensembl_gene_id: HMPREF7215_0234
symbol: glyS
gene_biotype: protein_coding
description:
  glycine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; match to protein family HMM TIGR00277.


ensembl_gene_id: HMPREF7215_0235
symbol: EFB89467.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: HMPREF7215_0236
symbol: EFB90403.1
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00248.


ensembl_gene_id: HMPREF7215_0237
symbol: EFB90404.1
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase, NAD binding domain protein; Identified by match to protein family HMM PF01958; match to protein family HMM PF03447.


ensembl_gene_id: HMPREF7215_0239
symbol: EFB90406.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; Belongs to the peptidase M20A family.


ensembl_gene_id: HMPREF7215_0240
symbol: EFB90407.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF7215_0245
symbol: rpsB
gene_biotype: protein_coding
description:
  Ribosomal protein S2; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: HMPREF7215_0246
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: HMPREF7215_0248
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: HMPREF7215_0249
symbol: ade
gene_biotype: protein_coding
description:
  Adenine deaminase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.


ensembl_gene_id: HMPREF7215_0250
symbol: EFB91737.1
gene_biotype: protein_coding
description:
  Putative permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916.


ensembl_gene_id: HMPREF7215_0252
symbol: raiA
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: HMPREF7215_0253
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: HMPREF7215_0255
symbol: rpmA
gene_biotype: protein_coding
description:
  Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062.


ensembl_gene_id: HMPREF7215_0256
symbol: cgtA
gene_biotype: protein_coding
description:
  Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: HMPREF7215_0257
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: HMPREF7215_0258
symbol: EFB91745.1
gene_biotype: protein_coding
description:
  Cell envelope-like function transcriptional attenuator common domain protein; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.


ensembl_gene_id: HMPREF7215_0259
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: HMPREF7215_0262
symbol: EFB91749.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_0264
symbol: birA
gene_biotype: protein_coding
description:
  biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.


ensembl_gene_id: HMPREF7215_0267
symbol: EFB89573.1
gene_biotype: protein_coding
description:
  Hemagglutinin; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF05662.


ensembl_gene_id: HMPREF7215_0268
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: HMPREF7215_0271
symbol: EFB89577.1
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: HMPREF7215_0272
symbol: EFB89578.1
gene_biotype: protein_coding
description:
  Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321.


ensembl_gene_id: HMPREF7215_0273
symbol: EFB89579.1
gene_biotype: protein_coding
description:
  RND transporter, HAE1 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: HMPREF7215_0274
symbol: EFB91184.1
gene_biotype: protein_coding
description:
  Putative radical SAM protein, TIGR01212 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04055.


ensembl_gene_id: HMPREF7215_0275
symbol: pdxB
gene_biotype: protein_coding
description:
  4-phosphoerythronate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: HMPREF7215_0277
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: HMPREF7215_0278
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484.


ensembl_gene_id: HMPREF7215_0279
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: HMPREF7215_0280
symbol: gatA
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: HMPREF7215_0281
symbol: gatC
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: HMPREF7215_0282
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: HMPREF7215_0283
symbol: lysS
gene_biotype: protein_coding
description:
  lysine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF7215_0284
symbol: EFB91194.1
gene_biotype: protein_coding
description:
  TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: HMPREF7215_0285
symbol: EFB91195.1
gene_biotype: protein_coding
description:
  ComEC/Rec2-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.


ensembl_gene_id: HMPREF7215_0286
symbol: EFB91196.1
gene_biotype: protein_coding
description:
  comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.


ensembl_gene_id: HMPREF7215_0287
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: HMPREF7215_0291
symbol: EFB91201.1
gene_biotype: protein_coding
description:
  Transketolase; Identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780.


ensembl_gene_id: HMPREF7215_0301
symbol: EFB91211.1
gene_biotype: protein_coding
description:
  Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: HMPREF7215_0303
symbol: EFB91213.1
gene_biotype: protein_coding
description:
  Tungsten formylmethanofuran dehydrogenase, subunit E, FwdE; Identified by match to protein family HMM PF02663.


ensembl_gene_id: HMPREF7215_0308
symbol: EFB91217.1
gene_biotype: protein_coding
description:
  Base excision DNA repair protein, HhH-GPD family; Identified by match to protein family HMM PF00730.


ensembl_gene_id: HMPREF7215_0311
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.


ensembl_gene_id: HMPREF7215_0312
symbol: hypF
gene_biotype: protein_coding
description:
  Carbamoyltransferase HypF; Identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143.


ensembl_gene_id: HMPREF7215_0314
symbol: gmhA
gene_biotype: protein_coding
description:
  Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.


ensembl_gene_id: HMPREF7215_0315
symbol: gmhB
gene_biotype: protein_coding
description:
  D,D-heptose 1,7-bisphosphate phosphatase; Identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.


ensembl_gene_id: HMPREF7215_0316
symbol: rfaE
gene_biotype: protein_coding
description:
  Bifunctional protein RfaE, domain II; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: HMPREF7215_0318
symbol: EFB91227.1
gene_biotype: protein_coding
description:
  Putative lipopolysaccharide heptosyltransferase II; Identified by match to protein family HMM PF01075.


ensembl_gene_id: HMPREF7215_0325
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: HMPREF7215_0327
symbol: waaA
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: HMPREF7215_0328
symbol: EFB91237.1
gene_biotype: protein_coding
description:
  Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: HMPREF7215_0329
symbol: kdsA
gene_biotype: protein_coding
description:
  3-deoxy-8-phosphooctulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01362; Belongs to the KdsA family.


ensembl_gene_id: HMPREF7215_0330
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: HMPREF7215_0331
symbol: EFB91240.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.


ensembl_gene_id: HMPREF7215_0333
symbol: lpxB
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215; Belongs to the LpxB family.


ensembl_gene_id: HMPREF7215_0336
symbol: kdsC
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670.


ensembl_gene_id: HMPREF7215_0337
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: HMPREF7215_0338
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: HMPREF7215_0339
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: HMPREF7215_0340
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: HMPREF7215_0342
symbol: EFB91251.1
gene_biotype: protein_coding
description:
  Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.


ensembl_gene_id: HMPREF7215_0344
symbol: EFB91253.1
gene_biotype: protein_coding
description:
  Sigma-70 region 2; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.


ensembl_gene_id: HMPREF7215_0347
symbol: EFB91256.1
gene_biotype: protein_coding
description:
  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family; Identified by match to protein family HMM PF01558.


ensembl_gene_id: HMPREF7215_0348
symbol: EFB91257.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775.


ensembl_gene_id: HMPREF7215_0349
symbol: EFB91258.1
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); Identified by match to protein family HMM PF01855.


ensembl_gene_id: HMPREF7215_0358
symbol: EFB91267.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF07883.


ensembl_gene_id: HMPREF7215_0361
symbol: EFB91270.1
gene_biotype: protein_coding
description:
  Putative transposase, IS4 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF7215_0368
symbol: EFB91277.1
gene_biotype: protein_coding
description:
  Addiction module toxin, RelE/StbE family; Identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385.


ensembl_gene_id: HMPREF7215_0378
symbol: codY
gene_biotype: protein_coding
description:
  CodY helix-turn-helix domain protein; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.


ensembl_gene_id: HMPREF7215_0379
symbol: hslU
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: HMPREF7215_0380
symbol: hslV
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: HMPREF7215_0381
symbol: xerC
gene_biotype: protein_coding
description:
  Phage integrase SAM-like domain protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: HMPREF7215_0382
symbol: trmFO
gene_biotype: protein_coding
description:
  tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: HMPREF7215_0383
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: HMPREF7215_0385
symbol: ppsA
gene_biotype: protein_coding
description:
  Pyruvate, water dikinase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: HMPREF7215_0386
symbol: EFB91292.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: HMPREF7215_0387
symbol: dprA
gene_biotype: protein_coding
description:
  DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.


ensembl_gene_id: HMPREF7215_0388
symbol: EFB91294.1
gene_biotype: protein_coding
description:
  Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.


ensembl_gene_id: HMPREF7215_0391
symbol: ylqF
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.


ensembl_gene_id: HMPREF7215_0392
symbol: lepB
gene_biotype: protein_coding
description:
  Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.


ensembl_gene_id: HMPREF7215_0393
symbol: EFB91299.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08659.


ensembl_gene_id: HMPREF7215_0395
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: HMPREF7215_0398
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: HMPREF7215_0399
symbol: recQ
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.


ensembl_gene_id: HMPREF7215_0401
symbol: EFB91306.1
gene_biotype: protein_coding
description:
  Citrate transporter; Identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600.


ensembl_gene_id: HMPREF7215_0402
symbol: EFB91307.1
gene_biotype: protein_coding
description:
  Na+/H+ antiporter family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03553.


ensembl_gene_id: HMPREF7215_0403
symbol: EFB91308.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; overlaps another CDS with the same product name.


ensembl_gene_id: HMPREF7215_0404
symbol: EFB91568.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF08241.


ensembl_gene_id: HMPREF7215_0405
symbol: EFB91569.1
gene_biotype: protein_coding
description:
  Glu/Leu/Phe/Val dehydrogenase, dimerization domain protein; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: HMPREF7215_0409
symbol: EFB91573.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.


ensembl_gene_id: HMPREF7215_0413
symbol: EFB91956.1
gene_biotype: protein_coding
description:
  Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Identified by match to protein family HMM PF03279.


ensembl_gene_id: HMPREF7215_0414
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: HMPREF7215_0416
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: HMPREF7215_0418
symbol: EFB91961.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: HMPREF7215_0424
symbol: hup
gene_biotype: protein_coding
description:
  DNA-binding protein HU; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: HMPREF7215_0425
symbol: der
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: HMPREF7215_0427
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: HMPREF7215_0430
symbol: EFB91973.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.


ensembl_gene_id: HMPREF7215_0431
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: HMPREF7215_0433
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017.


ensembl_gene_id: HMPREF7215_0434
symbol: rluB
gene_biotype: protein_coding
description:
  Pseudouridylate synthase; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: HMPREF7215_0435
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: HMPREF7215_0436
symbol: EFB91979.1
gene_biotype: protein_coding
description:
  ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: HMPREF7215_0437
symbol: EFB91980.1
gene_biotype: protein_coding
description:
  Dinuclear metal center protein, YbgI family; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.


ensembl_gene_id: HMPREF7215_0438
symbol: glpX
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase, class II; Identified by match to protein family HMM PF03320; match to protein family HMM TIGR00330.


ensembl_gene_id: HMPREF7215_0439
symbol: purB
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: HMPREF7215_0440
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: HMPREF7215_0443
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: HMPREF7215_0444
symbol: EFB91987.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: HMPREF7215_0445
symbol: abgA
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: HMPREF7215_0453
symbol: typA
gene_biotype: protein_coding
description:
  GTP-binding protein TypA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394.


ensembl_gene_id: HMPREF7215_0454
symbol: gpsA
gene_biotype: protein_coding
description:
  Putative glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF7215_0457
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: HMPREF7215_0461
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; Identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739.


ensembl_gene_id: HMPREF7215_0465
symbol: EFB91405.1
gene_biotype: protein_coding
description:
  Purine catabolism regulatory protein-like family; Identified by match to protein family HMM PF07905.


ensembl_gene_id: HMPREF7215_0467
symbol: EFB91407.1
gene_biotype: protein_coding
description:
  Ankyrin repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.


ensembl_gene_id: HMPREF7215_0468
symbol: EFB91408.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: HMPREF7215_0469
symbol: EFB91409.1
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase/poly(A) polymerase family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01743; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: HMPREF7215_0471
symbol: xth
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.


ensembl_gene_id: HMPREF7215_0477
symbol: proA
gene_biotype: protein_coding
description:
  Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: HMPREF7215_0478
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: HMPREF7215_0479
symbol: trxA
gene_biotype: protein_coding
description:
  Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.


ensembl_gene_id: HMPREF7215_0480
symbol: EFB92014.1
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.


ensembl_gene_id: HMPREF7215_0481
symbol: EFB92015.1
gene_biotype: protein_coding
description:
  ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; Belongs to the ClpA/ClpB family.


ensembl_gene_id: HMPREF7215_0483
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: HMPREF7215_0488
symbol: EFB92022.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Rrf2 family; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.


ensembl_gene_id: HMPREF7215_0496
symbol: EFB92029.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00270; match to protein family HMM PF00271.


ensembl_gene_id: HMPREF7215_0497
symbol: EFB89957.1
gene_biotype: protein_coding
description:
  DbpA RNA binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF7215_0501
symbol: EFB89961.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.


ensembl_gene_id: HMPREF7215_0506
symbol: EFB89966.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; Belongs to the peptidase M20A family.


ensembl_gene_id: HMPREF7215_0510
symbol: mutS2
gene_biotype: protein_coding
description:
  MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: HMPREF7215_0514
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: HMPREF7215_0515
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase, alpha subunit; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: HMPREF7215_0516
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: HMPREF7215_0517
symbol: rpmI
gene_biotype: protein_coding
description:
  Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: HMPREF7215_0518
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: HMPREF7215_0521
symbol: EFB91789.1
gene_biotype: protein_coding
description:
  Addiction module antitoxin, RelB/DinJ family; Identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384.


ensembl_gene_id: HMPREF7215_0526
symbol: thrS
gene_biotype: protein_coding
description:
  threonine--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF07973; match to protein family HMM TIGR00418; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF7215_0527
symbol: dut
gene_biotype: protein_coding
description:
  dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: HMPREF7215_0528
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: HMPREF7215_0529
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: HMPREF7215_0531
symbol: EFB91799.1
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF04321.


ensembl_gene_id: HMPREF7215_0532
symbol: EFB91800.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.


ensembl_gene_id: HMPREF7215_0534
symbol: nadK
gene_biotype: protein_coding
description:
  NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: HMPREF7215_0535
symbol: rrmJ
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase J; Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.


ensembl_gene_id: HMPREF7215_0536
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: HMPREF7215_0537
symbol: EFB91805.1
gene_biotype: protein_coding
description:
  Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: HMPREF7215_0538
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: HMPREF7215_0539
symbol: EFB91807.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.


ensembl_gene_id: HMPREF7215_0542
symbol: mltG
gene_biotype: protein_coding
description:
  YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: HMPREF7215_0543
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: HMPREF7215_0544
symbol: EFB91812.1
gene_biotype: protein_coding
description:
  SpoIID/LytB domain protein; Identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669.


ensembl_gene_id: HMPREF7215_0545
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: HMPREF7215_0546
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA domain protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: HMPREF7215_0547
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: HMPREF7215_0548
symbol: EFB91816.1
gene_biotype: protein_coding
description:
  DNA-binding regulatory protein, YebC/PmpR family; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.


ensembl_gene_id: HMPREF7215_0549
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: HMPREF7215_0550
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: HMPREF7215_0551
symbol: rseP
gene_biotype: protein_coding
description:
  RIP metalloprotease RseP; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.


ensembl_gene_id: HMPREF7215_0552
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: HMPREF7215_0553
symbol: cdsA
gene_biotype: protein_coding
description:
  Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.


ensembl_gene_id: HMPREF7215_0554
symbol: uppS
gene_biotype: protein_coding
description:
  Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: HMPREF7215_0555
symbol: EFB90687.1
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase A; Identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758.


ensembl_gene_id: HMPREF7215_0557
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: HMPREF7215_0559
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: HMPREF7215_0564
symbol: EFB90696.1
gene_biotype: protein_coding
description:
  Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.


ensembl_gene_id: HMPREF7215_0566
symbol: folC
gene_biotype: protein_coding
description:
  Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: HMPREF7215_0567
symbol: valS
gene_biotype: protein_coding
description:
  valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: HMPREF7215_0568
symbol: ysxC
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: HMPREF7215_0569
symbol: lon
gene_biotype: protein_coding
description:
  Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: HMPREF7215_0570
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: HMPREF7215_0571
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: HMPREF7215_0572
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: HMPREF7215_0574
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: HMPREF7215_0582
symbol: gltX
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: HMPREF7215_0583
symbol: polA
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.


ensembl_gene_id: HMPREF7215_0591
symbol: EFB90895.1
gene_biotype: protein_coding
description:
  Fic family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_0593
symbol: EFB90897.1
gene_biotype: protein_coding
description:
  Putative phage tail tape measure protein, lambda family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.


ensembl_gene_id: HMPREF7215_0598
symbol: tadA
gene_biotype: protein_coding
description:
  Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: HMPREF7215_0602
symbol: EFB91010.1
gene_biotype: protein_coding
description:
  Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929.


ensembl_gene_id: HMPREF7215_0605
symbol: iorA
gene_biotype: protein_coding
description:
  Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.


ensembl_gene_id: HMPREF7215_0606
symbol: EFB91014.1
gene_biotype: protein_coding
description:
  LysR substrate binding domain protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF7215_0607
symbol: EFB91015.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, toxin component, MazF family; Identified by match to protein family HMM PF02452.


ensembl_gene_id: HMPREF7215_0611
symbol: EFB91019.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, toxin component, RelE family; Identified by match to protein family HMM PF05973.


ensembl_gene_id: HMPREF7215_0614
symbol: EFB91022.1
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: HMPREF7215_0615
symbol: EFB91023.1
gene_biotype: protein_coding
description:
  Phage integrase SAM-like domain protein; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family.


ensembl_gene_id: HMPREF7215_0617
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: HMPREF7215_0618
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: HMPREF7215_0621
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: HMPREF7215_0622
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: HMPREF7215_0623
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: HMPREF7215_0624
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: HMPREF7215_0625
symbol: EFB91033.1
gene_biotype: protein_coding
description:
  RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: HMPREF7215_0626
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: HMPREF7215_0628
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; Identified by match to protein family HMM PF00670; match to protein family HMM PF02826; match to protein family HMM PF05221; match to protein family HMM TIGR00936.


ensembl_gene_id: HMPREF7215_0629
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: HMPREF7215_0630
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: HMPREF7215_0634
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: HMPREF7215_0638
symbol: EFB91046.1
gene_biotype: protein_coding
description:
  Bacterial type II/III secretion system short domain protein; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.


ensembl_gene_id: HMPREF7215_0644
symbol: EFB91052.1
gene_biotype: protein_coding
description:
  Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482.


ensembl_gene_id: HMPREF7215_0645
symbol: EFB91053.1
gene_biotype: protein_coding
description:
  Twitching motility protein; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.


ensembl_gene_id: HMPREF7215_0646
symbol: EFB91054.1
gene_biotype: protein_coding
description:
  Type II/IV secretion system protein; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.


ensembl_gene_id: HMPREF7215_0649
symbol: EFB91057.1
gene_biotype: protein_coding
description:
  Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM TIGR02532.


ensembl_gene_id: HMPREF7215_0656
symbol: rfbB
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: HMPREF7215_0657
symbol: rfbA
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: HMPREF7215_0660
symbol: aepX
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate mutase; Identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02320.


ensembl_gene_id: HMPREF7215_0662
symbol: aepY
gene_biotype: protein_coding
description:
  Phosphonopyruvate decarboxylase; Identified by match to protein family HMM PF02775; match to protein family HMM TIGR03297.


ensembl_gene_id: HMPREF7215_0664
symbol: EFB91072.1
gene_biotype: protein_coding
description:
  CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464.


ensembl_gene_id: HMPREF7215_0666
symbol: EFB91074.1
gene_biotype: protein_coding
description:
  Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132.


ensembl_gene_id: HMPREF7215_0667
symbol: EFB91075.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: HMPREF7215_0670
symbol: EFB91078.1
gene_biotype: protein_coding
description:
  Transposase, IS4 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01609.


ensembl_gene_id: HMPREF7215_0671
symbol: EFB91079.1
gene_biotype: protein_coding
description:
  Transposase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF7215_0690
symbol: oppB
gene_biotype: protein_coding
description:
  Oligopeptide transport system permease protein OppB; Identified by match to protein family HMM PF00528.


ensembl_gene_id: HMPREF7215_0692
symbol: EFB91100.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.


ensembl_gene_id: HMPREF7215_0694
symbol: EFB91102.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.


ensembl_gene_id: HMPREF7215_0696
symbol: EFB91104.1
gene_biotype: protein_coding
description:
  Putative phosphonate C-P lyase system protein PhnK; Identified by match to protein family HMM PF00005.


ensembl_gene_id: HMPREF7215_0698
symbol: EFB91106.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00528.


ensembl_gene_id: HMPREF7215_0699
symbol: EFB89898.1
gene_biotype: protein_coding
description:
  AAA family ATPase, CDC48 subfamily; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00004; match to protein family HMM TIGR01243; Belongs to the AAA ATPase family.


ensembl_gene_id: HMPREF7215_0703
symbol: EFB89902.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: HMPREF7215_0707
symbol: aDH
gene_biotype: protein_coding
description:
  NADP-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: HMPREF7215_0708
symbol: EFB90591.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate anaerobic carrier; Identified by match to protein family HMM PF03606; match to protein family HMM PF03806.


ensembl_gene_id: HMPREF7215_0713
symbol: EFB90596.1
gene_biotype: protein_coding
description:
  TIGR02757 family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF09674; match to protein family HMM TIGR02757.


ensembl_gene_id: HMPREF7215_0717
symbol: EFB90600.1
gene_biotype: protein_coding
description:
  Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.


ensembl_gene_id: HMPREF7215_0723
symbol: EFB90606.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: HMPREF7215_0731
symbol: EFB91868.1
gene_biotype: protein_coding
description:
  Putative threonine synthase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00291.


ensembl_gene_id: HMPREF7215_0733
symbol: ribA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: HMPREF7215_0736
symbol: EFB89876.1
gene_biotype: protein_coding
description:
  Putative exonuclease subunit SbcC; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_0737
symbol: sbcD
gene_biotype: protein_coding
description:
  Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: HMPREF7215_0739
symbol: EFB89879.1
gene_biotype: protein_coding
description:
  Orn/Lys/Arg decarboxylase, major domain protein; Identified by match to protein family HMM PF01276; match to protein family HMM PF03711.


ensembl_gene_id: HMPREF7215_0750
symbol: aspS
gene_biotype: protein_coding
description:
  aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: HMPREF7215_0751
symbol: hisS
gene_biotype: protein_coding
description:
  histidine--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.


ensembl_gene_id: HMPREF7215_0758
symbol: dcuS
gene_biotype: protein_coding
description:
  Sensor protein DcuS; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448.


ensembl_gene_id: HMPREF7215_0763
symbol: EFB91767.1
gene_biotype: protein_coding
description:
  Peptidase T-like protein; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01883.


ensembl_gene_id: HMPREF7215_0766
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the CarB family.


ensembl_gene_id: HMPREF7215_0767
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, small subunit; Identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; Belongs to the CarA family.


ensembl_gene_id: HMPREF7215_0768
symbol: EFB91772.1
gene_biotype: protein_coding
description:
  Dihydroorotase domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_0770
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: HMPREF7215_0773
symbol: EFB90719.1
gene_biotype: protein_coding
description:
  Hep/Hag repeat protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF05658; match to protein family HMM PF05662.


ensembl_gene_id: HMPREF7215_0775
symbol: EFB89334.1
gene_biotype: protein_coding
description:
  UvrD/REP helicase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00580.


ensembl_gene_id: HMPREF7215_0777
symbol: EFB91750.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.


ensembl_gene_id: HMPREF7215_0778
symbol: citC
gene_biotype: protein_coding
description:
  [citrate (pro-3S)-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.


ensembl_gene_id: HMPREF7215_0780
symbol: EFB89499.1
gene_biotype: protein_coding
description:
  Ankyrin repeat protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00023.


ensembl_gene_id: HMPREF7215_0781
symbol: EFB89500.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: HMPREF7215_0792
symbol: EFB90748.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02518; match to protein family HMM PF08448.


ensembl_gene_id: HMPREF7215_0793
symbol: EFB90749.1
gene_biotype: protein_coding
description:
  Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.


ensembl_gene_id: HMPREF7215_0801
symbol: EFB90757.1
gene_biotype: protein_coding
description:
  Alpha-2-macroglobulin family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01835; match to protein family HMM PF07703.


ensembl_gene_id: HMPREF7215_0802
symbol: pbpC
gene_biotype: protein_coding
description:
  Penicillin-binding protein 1C; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02073.


ensembl_gene_id: HMPREF7215_0803
symbol: proV
gene_biotype: protein_coding
description:
  Glycine betaine/L-proline transport ATP binding subunit; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.


ensembl_gene_id: HMPREF7215_0805
symbol: EFB90761.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069.


ensembl_gene_id: HMPREF7215_0806
symbol: EFB90763.1
gene_biotype: protein_coding
description:
  TrkA C-terminal domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF02080.


ensembl_gene_id: HMPREF7215_0814
symbol: pepT
gene_biotype: protein_coding
description:
  Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: HMPREF7215_0820
symbol: ggt
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; Identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066.


ensembl_gene_id: HMPREF7215_0823
symbol: EFB90779.1
gene_biotype: protein_coding
description:
  Citrate transporter; Identified by match to protein family HMM PF03600; match to protein family HMM PF06808.


ensembl_gene_id: HMPREF7215_0826
symbol: pepF
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181.


ensembl_gene_id: HMPREF7215_0828
symbol: EFB90784.1
gene_biotype: protein_coding
description:
  Nitroreductase family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00881.


ensembl_gene_id: HMPREF7215_0829
symbol: higA
gene_biotype: protein_coding
description:
  Addiction module antidote protein HigA; Identified by match to protein family HMM PF01381; match to protein family HMM TIGR02607.


ensembl_gene_id: HMPREF7215_0837
symbol: EFB89345.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, toxin component, RelE family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF7215_0844
symbol: EFB89352.1
gene_biotype: protein_coding
description:
  RND transporter, HAE1 family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: HMPREF7215_0852
symbol: sdhA
gene_biotype: protein_coding
description:
  Succinate dehydrogenase flavoprotein subunit; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00890; match to protein family HMM PF07992.


ensembl_gene_id: HMPREF7215_0853
symbol: EFB90131.1
gene_biotype: protein_coding
description:
  Fumarate reductase/succinate dehydrogenase flavoprotein domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02910.


ensembl_gene_id: HMPREF7215_0867
symbol: etfA
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein FAD-binding domain protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.


ensembl_gene_id: HMPREF7215_0869
symbol: EFB90147.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: HMPREF7215_0872
symbol: EFB90148.1
gene_biotype: protein_coding
description:
  Polysaccharide deacetylase; Identified by match to protein family HMM PF01522; overlaps another CDS with the same product name.


ensembl_gene_id: HMPREF7215_0875
symbol: EFB90151.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: HMPREF7215_0876
symbol: EFB90152.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.


ensembl_gene_id: HMPREF7215_0878
symbol: argH
gene_biotype: protein_coding
description:
  Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.


ensembl_gene_id: HMPREF7215_0885
symbol: EFB90161.1
gene_biotype: protein_coding
description:
  Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904.


ensembl_gene_id: HMPREF7215_0886
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: HMPREF7215_0889
symbol: ecfA
gene_biotype: protein_coding
description:
  Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.


ensembl_gene_id: HMPREF7215_0890
symbol: rplQ
gene_biotype: protein_coding
description:
  Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.


ensembl_gene_id: HMPREF7215_0891
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: HMPREF7215_0892
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: HMPREF7215_0893
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: HMPREF7215_0895
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: HMPREF7215_0896
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: HMPREF7215_0897
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: HMPREF7215_0898
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: HMPREF7215_0899
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: HMPREF7215_0900
symbol: rpmD
gene_biotype: protein_coding
description:
  Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308.


ensembl_gene_id: HMPREF7215_0901
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: HMPREF7215_0902
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: HMPREF7215_0903
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: HMPREF7215_0904
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: HMPREF7215_0905
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: HMPREF7215_0906
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: HMPREF7215_0907
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: HMPREF7215_0908
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: HMPREF7215_0909
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: HMPREF7215_0910
symbol: rpmC
gene_biotype: protein_coding
description:
  Ribosomal protein L29; Identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: HMPREF7215_0911
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: HMPREF7215_0912
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: HMPREF7215_0913
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: HMPREF7215_0914
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: HMPREF7215_0915
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: HMPREF7215_0917
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: HMPREF7215_0918
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: HMPREF7215_0919
symbol: fusA-2
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: HMPREF7215_0920
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: HMPREF7215_0921
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: HMPREF7215_0922
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: HMPREF7215_0923
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: HMPREF7215_0925
symbol: EFB89851.1
gene_biotype: protein_coding
description:
  SUA5 domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03481.


ensembl_gene_id: HMPREF7215_0926
symbol: EFB90033.1
gene_biotype: protein_coding
description:
  Putative Sua5/YciO/YrdC/YwlC family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01300.


ensembl_gene_id: HMPREF7215_0927
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]


ensembl_gene_id: HMPREF7215_0928
symbol: EFB90035.1
gene_biotype: protein_coding
description:
  Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.


ensembl_gene_id: HMPREF7215_0932
symbol: metG
gene_biotype: protein_coding
description:
  methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: HMPREF7215_0933
symbol: rsmI
gene_biotype: protein_coding
description:
  S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: HMPREF7215_0935
symbol: EFB90042.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF05175; match to protein family HMM PF08242.


ensembl_gene_id: HMPREF7215_0936
symbol: EFB90043.1
gene_biotype: protein_coding
description:
  RecF/RecN/SMC N-terminal domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02463.


ensembl_gene_id: HMPREF7215_0937
symbol: EFB90044.1
gene_biotype: protein_coding
description:
  RecF/RecN/SMC N-terminal domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02463; match to protein family HMM PF06470.


ensembl_gene_id: HMPREF7215_0938
symbol: EFB90045.1
gene_biotype: protein_coding
description:
  S1 RNA binding domain protein; Identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757.


ensembl_gene_id: HMPREF7215_0939
symbol: EFB90046.1
gene_biotype: protein_coding
description:
  Radical SAM-linked protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF7215_0940
symbol: EFB90047.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04055.


ensembl_gene_id: HMPREF7215_0941
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; Belongs to the SEDS family.


ensembl_gene_id: HMPREF7215_0942
symbol: minE
gene_biotype: protein_coding
description:
  Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.


ensembl_gene_id: HMPREF7215_0943
symbol: minD
gene_biotype: protein_coding
description:
  Septum site-determining protein MinD; Identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968.


ensembl_gene_id: HMPREF7215_0944
symbol: minC
gene_biotype: protein_coding
description:
  Putative septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: HMPREF7215_0945
symbol: mrdA
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.


ensembl_gene_id: HMPREF7215_0949
symbol: radC
gene_biotype: protein_coding
description:
  DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.


ensembl_gene_id: HMPREF7215_0951
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: HMPREF7215_0952
symbol: EFB90059.1
gene_biotype: protein_coding
description:
  RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: HMPREF7215_0953
symbol: EFB90060.1
gene_biotype: protein_coding
description:
  Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.


ensembl_gene_id: HMPREF7215_0955
symbol: secF
gene_biotype: protein_coding
description:
  Export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: HMPREF7215_0956
symbol: secD
gene_biotype: protein_coding
description:
  Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: HMPREF7215_0958
symbol: rex
gene_biotype: protein_coding
description:
  CoA binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: HMPREF7215_0959
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: HMPREF7215_0968
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: HMPREF7215_0969
symbol: hppA
gene_biotype: protein_coding
description:
  V-type H(+)-translocating pyrophosphatase; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.


ensembl_gene_id: HMPREF7215_0974
symbol: EFB90081.1
gene_biotype: protein_coding
description:
  Threonine/alanine tRNA ligase second additional domain protein; Identified by match to protein family HMM PF07973.


ensembl_gene_id: HMPREF7215_0977
symbol: EFB90084.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 3; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.


ensembl_gene_id: HMPREF7215_0979
symbol: EFB89603.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01022.


ensembl_gene_id: HMPREF7215_0982
symbol: cadA
gene_biotype: protein_coding
description:
  Cadmium-exporting ATPase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.


ensembl_gene_id: HMPREF7215_0990
symbol: argG
gene_biotype: protein_coding
description:
  Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: HMPREF7215_0991
symbol: EFB89615.1
gene_biotype: protein_coding
description:
  Cupin domain protein; Identified by match to protein family HMM PF02627; match to protein family HMM PF07883.


ensembl_gene_id: HMPREF7215_0994
symbol: EFB89618.1
gene_biotype: protein_coding
description:
  tRNA ligase class II core domain (G, H, P, S and T); Identified by match to protein family HMM PF00587.


ensembl_gene_id: HMPREF7215_0995
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: HMPREF7215_0996
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: HMPREF7215_0997
symbol: hisC
gene_biotype: protein_coding
description:
  Histidinol-phosphate transaminase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: HMPREF7215_0999
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: HMPREF7215_1000
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007.


ensembl_gene_id: HMPREF7215_1001
symbol: hisF
gene_biotype: protein_coding
description:
  Putative imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: HMPREF7215_1002
symbol: hisE
gene_biotype: protein_coding
description:
  phosphoribosyl-ATP diphosphatase; Identified by match to protein family HMM PF01502; match to protein family HMM PF01503; match to protein family HMM TIGR03188; In the N-terminal section; belongs to the PRA-CH family.


ensembl_gene_id: HMPREF7215_1003
symbol: EFB89627.1
gene_biotype: protein_coding
description:
  Histidinol phosphate phosphatase HisJ family; Identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; Belongs to the PHP hydrolase family. HisK subfamily.


ensembl_gene_id: HMPREF7215_1004
symbol: mutM
gene_biotype: protein_coding
description:
  DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: HMPREF7215_1005
symbol: EFB89629.1
gene_biotype: protein_coding
description:
  Putative glycogen debranching enzyme, archaeal type; Identified by match to protein family HMM PF06202; match to protein family HMM TIGR01561.


ensembl_gene_id: HMPREF7215_1008
symbol: glgP
gene_biotype: protein_coding
description:
  Alpha-glucan phosphorylase; Identified by match to protein family HMM PF00343; match to protein family HMM PF05693; match to protein family HMM TIGR02094.


ensembl_gene_id: HMPREF7215_1011
symbol: glf
gene_biotype: protein_coding
description:
  UDP-galactopyranose mutase; Identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031.


ensembl_gene_id: HMPREF7215_1016
symbol: EFB89640.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.


ensembl_gene_id: HMPREF7215_1027
symbol: panE
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: HMPREF7215_1028
symbol: EFB89652.1
gene_biotype: protein_coding
description:
  D-galactarate dehydratase/altronate hydrolase domain protein; Identified by match to protein family HMM PF04295.


ensembl_gene_id: HMPREF7215_1029
symbol: EFB89653.1
gene_biotype: protein_coding
description:
  SAF domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08666.


ensembl_gene_id: HMPREF7215_1032
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family.


ensembl_gene_id: HMPREF7215_1034
symbol: EFB89658.1
gene_biotype: protein_coding
description:
  Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF06506.


ensembl_gene_id: HMPREF7215_1035
symbol: EFB89659.1
gene_biotype: protein_coding
description:
  Aminotransferase, class I/II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01212.


ensembl_gene_id: HMPREF7215_1039
symbol: EFB89663.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: HMPREF7215_1044
symbol: EFB90723.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.


ensembl_gene_id: HMPREF7215_1048
symbol: EFB90727.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.


ensembl_gene_id: HMPREF7215_1051
symbol: EFB90730.1
gene_biotype: protein_coding
description:
  Putative peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: HMPREF7215_1054
symbol: selD
gene_biotype: protein_coding
description:
  Selenide, water dikinase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02769; match to protein family HMM TIGR00476.


ensembl_gene_id: HMPREF7215_1057
symbol: pyrR
gene_biotype: protein_coding
description:
  Phosphoribosyl transferase domain protein; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.


ensembl_gene_id: HMPREF7215_1058
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: HMPREF7215_1059
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP).


ensembl_gene_id: HMPREF7215_1061
symbol: EFB90740.1
gene_biotype: protein_coding
description:
  Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.


ensembl_gene_id: HMPREF7215_1062
symbol: pyrC
gene_biotype: protein_coding
description:
  Amidohydrolase family protein; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: HMPREF7215_1063
symbol: EFB90742.1
gene_biotype: protein_coding
description:
  Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01879.


ensembl_gene_id: HMPREF7215_1066
symbol: EFB90745.1
gene_biotype: protein_coding
description:
  TRAP transporter solute receptor, DctP family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787.


ensembl_gene_id: HMPREF7215_1068
symbol: EFB91933.1
gene_biotype: protein_coding
description:
  Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein; Identified by match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: HMPREF7215_1075
symbol: mntP
gene_biotype: protein_coding
description:
  Hypothetical protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.


ensembl_gene_id: HMPREF7215_1078
symbol: EFB91942.1
gene_biotype: protein_coding
description:
  Putative peptidyl-prolyl cis-trans isomerase, EpsD family; Identified by match to protein family HMM PF00639.


ensembl_gene_id: HMPREF7215_1087
symbol: EFB91950.1
gene_biotype: protein_coding
description:
  Membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01970.


ensembl_gene_id: HMPREF7215_1089
symbol: EFB91953.1
gene_biotype: protein_coding
description:
  D-galactarate dehydratase/altronate hydrolase domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04295.


ensembl_gene_id: HMPREF7215_1090
symbol: EFB89987.1
gene_biotype: protein_coding
description:
  LysR substrate binding domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF7215_1091
symbol: EFB89988.1
gene_biotype: protein_coding
description:
  Peptidase dimerization domain protein; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.


ensembl_gene_id: HMPREF7215_1098
symbol: EFB89995.1
gene_biotype: protein_coding
description:
  Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; Identified by match to protein family HMM PF03417.


ensembl_gene_id: HMPREF7215_1102
symbol: EFB89999.1
gene_biotype: protein_coding
description:
  Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.


ensembl_gene_id: HMPREF7215_1113
symbol: EFB90010.1
gene_biotype: protein_coding
description:
  Glutamine synthetase, beta-grasp domain protein; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; Belongs to the glutamine synthetase family.


ensembl_gene_id: HMPREF7215_1115
symbol: EFB90012.1
gene_biotype: protein_coding
description:
  Peptidase dimerization domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01546; match to protein family HMM PF07687.


ensembl_gene_id: HMPREF7215_1118
symbol: EFB89581.1
gene_biotype: protein_coding
description:
  Putative selenium metabolism hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR03320; match to protein family HMM TIGR03526.


ensembl_gene_id: HMPREF7215_1122
symbol: EFB89585.1
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein, family 7; Identified by match to protein family HMM PF03480.


ensembl_gene_id: HMPREF7215_1125
symbol: EFB89588.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969.


ensembl_gene_id: HMPREF7215_1128
symbol: thrC
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: HMPREF7215_1132
symbol: fhs
gene_biotype: protein_coding
description:
  Formate--tetrahydrofolate ligase; Identified by match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family.


ensembl_gene_id: HMPREF7215_1135
symbol: folD
gene_biotype: protein_coding
description:
  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00763; match to protein family HMM PF02882.


ensembl_gene_id: HMPREF7215_1136
symbol: EFB90819.1
gene_biotype: protein_coding
description:
  Putative tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02882.


ensembl_gene_id: HMPREF7215_1141
symbol: EFB90824.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Identified by match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: HMPREF7215_1142
symbol: EFB90825.1
gene_biotype: protein_coding
description:
  6-O-methylguanine DNA methyltransferase, DNA binding domain protein; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589.


ensembl_gene_id: HMPREF7215_1144
symbol: dinB
gene_biotype: protein_coding
description:
  Putative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: HMPREF7215_1147
symbol: EFB90830.1
gene_biotype: protein_coding
description:
  Glycerate kinase; Identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: HMPREF7215_1148
symbol: EFB90831.1
gene_biotype: protein_coding
description:
  Citrate transporter; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03600.


ensembl_gene_id: HMPREF7215_1154
symbol: EFB90837.1
gene_biotype: protein_coding
description:
  Tat pathway signal sequence domain protein; Identified by match to protein family HMM PF00753; match to protein family HMM TIGR01409.


ensembl_gene_id: HMPREF7215_1157
symbol: tatA
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: HMPREF7215_1158
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.


ensembl_gene_id: HMPREF7215_1159
symbol: EFB90842.1
gene_biotype: protein_coding
description:
  RND transporter, HAE1/HME family, permease protein; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: HMPREF7215_1160
symbol: EFB90843.1
gene_biotype: protein_coding
description:
  Putative bacteriochlorophyll 4-vinyl reductase; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: HMPREF7215_1164
symbol: iadA
gene_biotype: protein_coding
description:
  Beta-aspartyl peptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation.


ensembl_gene_id: HMPREF7215_1166
symbol: nhaC
gene_biotype: protein_coding
description:
  Na+/H+ antiporter NhaC; Identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931.


ensembl_gene_id: HMPREF7215_1169
symbol: EFB90852.1
gene_biotype: protein_coding
description:
  MATE efflux family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.


ensembl_gene_id: HMPREF7215_1171
symbol: EFB90260.1
gene_biotype: protein_coding
description:
  Transporter, small conductance mechanosensitive ion channel MscS family protein; Identified by match to protein family HMM PF00924.


ensembl_gene_id: HMPREF7215_1179
symbol: EFB90268.1
gene_biotype: protein_coding
description:
  Transglycosylase SLT domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01464.


ensembl_gene_id: HMPREF7215_1180
symbol: EFB90269.1
gene_biotype: protein_coding
description:
  Thiamine diphosphokinase; Identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378.


ensembl_gene_id: HMPREF7215_1183
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: HMPREF7215_1184
symbol: thiD
gene_biotype: protein_coding
description:
  Phosphomethylpyrimidine kinase; Identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097.


ensembl_gene_id: HMPREF7215_1201
symbol: EFB90289.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Identified by match to protein family HMM PF04055; overlaps another CDS with the same product name.


ensembl_gene_id: HMPREF7215_1204
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: HMPREF7215_1207
symbol: EFB90295.1
gene_biotype: protein_coding
description:
  UbiC transcription regulator-associated domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF07702.


ensembl_gene_id: HMPREF7215_1218
symbol: EFB90306.1
gene_biotype: protein_coding
description:
  Glycine dehydrogenase subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.


ensembl_gene_id: HMPREF7215_1221
symbol: EFB90309.1
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase, iron-dependent; Identified by match to protein family HMM PF00465; match to protein family HMM PF01761.


ensembl_gene_id: HMPREF7215_1222
symbol: EFB90310.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.


ensembl_gene_id: HMPREF7215_1223
symbol: lpdA-2
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: HMPREF7215_1224
symbol: EFB90312.1
gene_biotype: protein_coding
description:
  Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.


ensembl_gene_id: HMPREF7215_1225
symbol: EFB90313.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.


ensembl_gene_id: HMPREF7215_1228
symbol: EFB90316.1
gene_biotype: protein_coding
description:
  Transketolase, pyridine binding domain protein; Identified by match to protein family HMM PF02779; match to protein family HMM PF02780.


ensembl_gene_id: HMPREF7215_1230
symbol: EFB90318.1
gene_biotype: protein_coding
description:
  Putative pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; Identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; dihydrolipoyllysine-residue acetyltransferase component of acetoincleaving system (Acetoin dehydrogenase E2 component)(Dihydrolipoamide acetyltransferase component of acetoin cleavingsystem).


ensembl_gene_id: HMPREF7215_1236
symbol: EFB90324.1
gene_biotype: protein_coding
description:
  Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: HMPREF7215_1237
symbol: EFB90325.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: HMPREF7215_1239
symbol: EFB90327.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376; match to protein family HMM PF06445.


ensembl_gene_id: HMPREF7215_1242
symbol: rnfC
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.


ensembl_gene_id: HMPREF7215_1243
symbol: rnfD
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, D subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.


ensembl_gene_id: HMPREF7215_1244
symbol: rnfG
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, G subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.


ensembl_gene_id: HMPREF7215_1245
symbol: rnfE
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, E subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: HMPREF7215_1246
symbol: rnfA
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, A subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: HMPREF7215_1247
symbol: rnfB
gene_biotype: protein_coding
description:
  Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: HMPREF7215_1249
symbol: EFB90337.1
gene_biotype: protein_coding
description:
  Fic family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF7215_1252
symbol: EFB91108.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase, dimerization domain protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.


ensembl_gene_id: HMPREF7215_1253
symbol: gcvPB
gene_biotype: protein_coding
description:
  Putative glycine dehydrogenase subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily.


ensembl_gene_id: HMPREF7215_1254
symbol: gcvPA
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.


ensembl_gene_id: HMPREF7215_1255
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: HMPREF7215_1288
symbol: EFB90203.1
gene_biotype: protein_coding
description:
  Putative glycine/sarcosine/betaine reductase complex protein A; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF7215_1289
symbol: EFB90204.1
gene_biotype: protein_coding
description:
  Glycine/sarcosine/betaine reductase complex protein A; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF7215_1295
symbol: EFB89469.1
gene_biotype: protein_coding
description:
  Aspartate kinase; Identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657; Belongs to the aspartokinase family.


ensembl_gene_id: HMPREF7215_1296
symbol: dapD
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.


ensembl_gene_id: HMPREF7215_1297
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: HMPREF7215_1298
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: HMPREF7215_1299
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: HMPREF7215_1305
symbol: EFB89479.1
gene_biotype: protein_coding
description:
  Aspartate racemase; Identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035.


ensembl_gene_id: HMPREF7215_1307
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: HMPREF7215_1310
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: HMPREF7215_1312
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: HMPREF7215_1314
symbol: EFB90023.1
gene_biotype: protein_coding
description:
  Putative CoA-substrate-specific enzyme activase; Identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241.


ensembl_gene_id: HMPREF7215_1316
symbol: EFB90025.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00528.


ensembl_gene_id: HMPREF7215_1317
symbol: EFB90026.1
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, permease family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF7215_1323
symbol: EFB90032.1
gene_biotype: protein_coding
description:
  Sporulation and cell division repeat protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF05036.


ensembl_gene_id: HMPREF7215_1324
symbol: EFB89716.1
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486.


ensembl_gene_id: HMPREF7215_1326
symbol: EFB89718.1
gene_biotype: protein_coding
description:
  Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; match to protein family HMM PF09297.


ensembl_gene_id: HMPREF7215_1336
symbol: EFB89727.1
gene_biotype: protein_coding
description:
  Hydrogenase, Fe-only; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.


ensembl_gene_id: HMPREF7215_1346
symbol: EFB89955.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.


ensembl_gene_id: HMPREF7215_1347
symbol: EFB89956.1
gene_biotype: protein_coding
description:
  NAD(+)/NADH kinase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01513.


ensembl_gene_id: HMPREF7215_1351
symbol: EFB91876.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: HMPREF7215_1355
symbol: EFB91880.1
gene_biotype: protein_coding
description:
  CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.


ensembl_gene_id: HMPREF7215_1371
symbol: EFB91896.1
gene_biotype: protein_coding
description:
  Putative methylmalonyl-CoA mutase, small subunit; Identified by match to protein family HMM PF01642.


ensembl_gene_id: HMPREF7215_1372
symbol: EFB91897.1
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase; Identified by match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641.


ensembl_gene_id: HMPREF7215_1373
symbol: EFB91898.1
gene_biotype: protein_coding
description:
  LAO/AO transport system ATPase; Identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750.


ensembl_gene_id: HMPREF7215_1378
symbol: nrdD
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase; Identified by match to protein family HMM PF03477; match to protein family HMM TIGR02487.


ensembl_gene_id: HMPREF7215_1379
symbol: nrdG
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.


ensembl_gene_id: HMPREF7215_1381
symbol: EFB91905.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF01209; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: HMPREF7215_1385
symbol: EFB91909.1
gene_biotype: protein_coding
description:
  Transporter, lactate permease (LctP) family; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: HMPREF7215_1389
symbol: EFB91913.1
gene_biotype: protein_coding
description:
  Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF07355; match to protein family HMM TIGR01918.


ensembl_gene_id: HMPREF7215_1390
symbol: EFB91914.1
gene_biotype: protein_coding
description:
  Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM TIGR01918.


ensembl_gene_id: HMPREF7215_1404
symbol: pflB
gene_biotype: protein_coding
description:
  Formate C-acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255.


ensembl_gene_id: HMPREF7215_1405
symbol: pflA
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase 1-activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: HMPREF7215_1407
symbol: EFB91931.1
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00027; match to protein family HMM PF00325.


ensembl_gene_id: HMPREF7215_1415
symbol: EFB90021.1
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00583.


ensembl_gene_id: HMPREF7215_1429
symbol: EFB91831.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.


ensembl_gene_id: HMPREF7215_1431
symbol: asnS
gene_biotype: protein_coding
description:
  asparagine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00457.


ensembl_gene_id: HMPREF7215_1432
symbol: EFB91834.1
gene_biotype: protein_coding
description:
  AMP-binding enzyme; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00501.


ensembl_gene_id: HMPREF7215_1435
symbol: EFB91577.1
gene_biotype: protein_coding
description:
  Aromatic ring-opening dioxygenase, catalytic subunit LigB; Identified by match to protein family HMM PF02900.


ensembl_gene_id: HMPREF7215_1437
symbol: EFB91579.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.


ensembl_gene_id: HMPREF7215_1440
symbol: EFB91582.1
gene_biotype: protein_coding
description:
  Putative selenium metabolism hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR03526.


ensembl_gene_id: HMPREF7215_1441
symbol: dpaL
gene_biotype: protein_coding
description:
  Diaminopropionate ammonia-lyase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01747; match to protein family HMM TIGR03528.


ensembl_gene_id: HMPREF7215_1443
symbol: EFB91585.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF08279.


ensembl_gene_id: HMPREF7215_1446
symbol: EFB91588.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM PF09084; match to protein family HMM TIGR01728.


ensembl_gene_id: HMPREF7215_1450
symbol: EFB89824.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00005.


ensembl_gene_id: HMPREF7215_1452
symbol: hydF
gene_biotype: protein_coding
description:
  Hydrogenase maturation GTPase HydF; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231.


ensembl_gene_id: HMPREF7215_1455
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081; Belongs to the SAICAR synthetase family.


ensembl_gene_id: HMPREF7215_1463
symbol: EFB89838.1
gene_biotype: protein_coding
description:
  Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211.


ensembl_gene_id: HMPREF7215_1471
symbol: EFB90519.1
gene_biotype: protein_coding
description:
  Outer membrane autotransporter barrel domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02415; match to protein family HMM PF03797; match to protein family HMM TIGR01376; match to protein family HMM TIGR01414.


ensembl_gene_id: HMPREF7215_1475
symbol: aroF
gene_biotype: protein_coding
description:
  3-deoxy-7-phosphoheptulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361.


ensembl_gene_id: HMPREF7215_1477
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: HMPREF7215_1478
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: HMPREF7215_1479
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: HMPREF7215_1480
symbol: EFB91512.1
gene_biotype: protein_coding
description:
  Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01817.


ensembl_gene_id: HMPREF7215_1481
symbol: EFB91513.1
gene_biotype: protein_coding
description:
  Putative shikimate dehydrogenase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01488; match to protein family HMM PF08501.


ensembl_gene_id: HMPREF7215_1482
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01202.


ensembl_gene_id: HMPREF7215_1483
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: HMPREF7215_1484
symbol: EFB90680.1
gene_biotype: protein_coding
description:
  Putative nitrogenase iron protein; Identified by match to protein family HMM PF00142; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: HMPREF7215_1502
symbol: EFB89974.1
gene_biotype: protein_coding
description:
  Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: HMPREF7215_1505
symbol: gltC
gene_biotype: protein_coding
description:
  HTH-type transcriptional regulator GltC; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF7215_1508
symbol: queF
gene_biotype: protein_coding
description:
  preQ(1) synthase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: HMPREF7215_1511
symbol: EFB89982.1
gene_biotype: protein_coding
description:
  Oxidoreductase; Identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909.


ensembl_gene_id: HMPREF7215_1512
symbol: nfo
gene_biotype: protein_coding
description:
  Apurinic endonuclease (APN1); Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.


ensembl_gene_id: HMPREF7215_1514
symbol: EFB89985.1
gene_biotype: protein_coding
description:
  TIGR00370 family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.


ensembl_gene_id: HMPREF7215_1516
symbol: EFB91431.1
gene_biotype: protein_coding
description:
  Allophanate hydrolase subunit 2; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02626.


ensembl_gene_id: HMPREF7215_1517
symbol: pxpA
gene_biotype: protein_coding
description:
  LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: HMPREF7215_1521
symbol: EFB91436.1
gene_biotype: protein_coding
description:
  Dicarboxylate carrier MatC domain protein; Identified by match to protein family HMM PF03600; match to protein family HMM PF07158.


ensembl_gene_id: HMPREF7215_1530
symbol: EFB91445.1
gene_biotype: protein_coding
description:
  Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.


ensembl_gene_id: HMPREF7215_1533
symbol: EFB91448.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.


ensembl_gene_id: HMPREF7215_1535
symbol: EFB91450.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, toxin component, RelE family; Identified by match to protein family HMM PF05016.


ensembl_gene_id: HMPREF7215_1539
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: HMPREF7215_1544
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: HMPREF7215_1554
symbol: azlD
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport protein AzlD; Identified by match to protein family HMM PF05437.


ensembl_gene_id: HMPREF7215_1555
symbol: EFB91470.1
gene_biotype: protein_coding
description:
  Putative amidophosphoribosyltransferase; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: HMPREF7215_1559
symbol: recA
gene_biotype: protein_coding
description:
  RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: HMPREF7215_1560
symbol: EFB91475.1
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: HMPREF7215_1561
symbol: EFB91476.1
gene_biotype: protein_coding
description:
  Competence/damage-inducible domain protein CinA; Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.


ensembl_gene_id: HMPREF7215_1563
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: HMPREF7215_1565
symbol: rpe
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: HMPREF7215_1567
symbol: EFB91482.1
gene_biotype: protein_coding
description:
  Putative ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: HMPREF7215_1570
symbol: degT
gene_biotype: protein_coding
description:
  Pleiotropic regulatory protein DegT; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: HMPREF7215_1572
symbol: EFB91487.1
gene_biotype: protein_coding
description:
  Desulfoferrodoxin ferrous iron-binding domain protein; Identified by match to protein family HMM PF01880; match to protein family HMM TIGR00332.


ensembl_gene_id: HMPREF7215_1574
symbol: cbpA
gene_biotype: protein_coding
description:
  Putative chaperone protein DnaJ; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.


ensembl_gene_id: HMPREF7215_1575
symbol: dapF-2
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: HMPREF7215_1577
symbol: EFB91492.1
gene_biotype: protein_coding
description:
  Prokaryotic diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid; Belongs to the bacterial diacylglycerol kinase family.


ensembl_gene_id: HMPREF7215_1578
symbol: EFB91493.1
gene_biotype: protein_coding
description:
  Na/Pi-cotransporter II-like protein; Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.


ensembl_gene_id: HMPREF7215_1583
symbol: EFB91498.1
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family.


ensembl_gene_id: HMPREF7215_1584
symbol: metN
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: HMPREF7215_1591
symbol: EFB89925.1
gene_biotype: protein_coding
description:
  IclR helix-turn-helix domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01614; match to protein family HMM PF09339.


ensembl_gene_id: HMPREF7215_1599
symbol: EFB89933.1
gene_biotype: protein_coding
description:
  Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.


ensembl_gene_id: HMPREF7215_1605
symbol: EFB91137.1
gene_biotype: protein_coding
description:
  Transporter, SSS family; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: HMPREF7215_1608
symbol: EFB91140.1
gene_biotype: protein_coding
description:
  Pseudouridylate synthase; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: HMPREF7215_1610
symbol: gidA
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: HMPREF7215_1612
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.


ensembl_gene_id: HMPREF7215_1613
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: HMPREF7215_1615
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: HMPREF7215_1628
symbol: spo0J
gene_biotype: protein_coding
description:
  Stage 0 sporulation protein J; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.


ensembl_gene_id: HMPREF7215_1630
symbol: gidB
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: HMPREF7215_1638
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: HMPREF7215_1639
symbol: EFB91171.1
gene_biotype: protein_coding
description:
  Sodium ion-translocating decarboxylase, beta subunit; Identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109.


ensembl_gene_id: HMPREF7215_1642
symbol: EFB91174.1
gene_biotype: protein_coding
description:
  Transporter, auxin efflux carrier (AEC) family protein; Identified by match to protein family HMM PF03547.


ensembl_gene_id: HMPREF7215_1646
symbol: EFB91178.1
gene_biotype: protein_coding
description:
  Peptidase dimerization domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01546; match to protein family HMM PF07687.


ensembl_gene_id: HMPREF7215_1649
symbol: EFB89940.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: HMPREF7215_1652
symbol: EFB89943.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.


ensembl_gene_id: HMPREF7215_1655
symbol: EFB92043.1
gene_biotype: protein_coding
description:
  Rop protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01815.


ensembl_gene_id: HMPREF7215_1657
symbol: EFB90522.1
gene_biotype: protein_coding
description:
  Transporter, major facilitator family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_1660
symbol: EFB89845.1
gene_biotype: protein_coding
description:
  Glycerate kinase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045.


ensembl_gene_id: HMPREF7215_1662
symbol: EFB91515.1
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 2-epimerase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: HMPREF7215_1663
symbol: EFB90252.1
gene_biotype: protein_coding
description:
  Putative modification methylase EcoRI; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_1666
symbol: EFB90898.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00035.


ensembl_gene_id: HMPREF7215_1669
symbol: EFB89842.1
gene_biotype: protein_coding
description:
  Transposase-like protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_1674
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: HMPREF7215_1675
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00464; match to protein family HMM PF01212.


ensembl_gene_id: HMPREF7215_1676
symbol: EFB90339.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.


ensembl_gene_id: HMPREF7215_1679
symbol: argF
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: HMPREF7215_1682
symbol: EFB91690.1
gene_biotype: protein_coding
description:
  ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.


ensembl_gene_id: HMPREF7215_1683
symbol: EFB91691.1
gene_biotype: protein_coding
description:
  Carbamate kinase; Identified by match to protein family HMM PF00696; Belongs to the carbamate kinase family.


ensembl_gene_id: HMPREF7215_1698
symbol: EFB91705.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.


ensembl_gene_id: HMPREF7215_1700
symbol: EFB91707.1
gene_biotype: protein_coding
description:
  Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00892.


ensembl_gene_id: HMPREF7215_1719
symbol: EFB91726.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, antitoxin component, HicB family; Identified by match to protein family HMM PF03681.


ensembl_gene_id: HMPREF7215_1727
symbol: EFB89489.1
gene_biotype: protein_coding
description:
  Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00155.


ensembl_gene_id: HMPREF7215_1736
symbol: EFB89498.1
gene_biotype: protein_coding
description:
  Amidohydrolase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01546.


ensembl_gene_id: HMPREF7215_1747
symbol: EFB91845.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: HMPREF7215_1749
symbol: EFB91847.1
gene_biotype: protein_coding
description:
  Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family.


ensembl_gene_id: HMPREF7215_1750
symbol: coaBC
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: HMPREF7215_1751
symbol: coaX
gene_biotype: protein_coding
description:
  Putative pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: HMPREF7215_1763
symbol: EFB91861.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376; match to protein family HMM PF09278.


ensembl_gene_id: HMPREF7215_1772
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated endoribonuclease Cas2; Identified by match to protein family HMM PF09707; match to protein family HMM TIGR01873.


ensembl_gene_id: HMPREF7215_1773
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: HMPREF7215_1775
symbol: casD
gene_biotype: protein_coding
description:
  CRISPR system CASCADE complex protein CasD; Identified by match to protein family HMM PF09708; match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; crispr-associated protein Cas5, ecoli subtype.


ensembl_gene_id: HMPREF7215_1776
symbol: casC
gene_biotype: protein_coding
description:
  CRISPR system CASCADE complex protein CasC; Identified by match to protein family HMM PF09344; match to protein family HMM TIGR01869.


ensembl_gene_id: HMPREF7215_1783
symbol: EFB90867.1
gene_biotype: protein_coding
description:
  Iron dependent repressor DNA binding domain protein; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742.


ensembl_gene_id: HMPREF7215_1784
symbol: EFB90868.1
gene_biotype: protein_coding
description:
  Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.


ensembl_gene_id: HMPREF7215_1794
symbol: EFB90878.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; Belongs to the UPF0340 family.


ensembl_gene_id: HMPREF7215_1795
symbol: EFB90879.1
gene_biotype: protein_coding
description:
  CRISPR-associated endonuclease Cas3-HD; Identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587.


ensembl_gene_id: HMPREF7215_1796
symbol: cas5d
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas5, Dvulg subtype; Identified by match to protein family HMM PF09704; match to protein family HMM TIGR01876; match to protein family HMM TIGR02593; crispr-associated protein Cas5, dvulg subtype.


ensembl_gene_id: HMPREF7215_1797
symbol: csd1
gene_biotype: protein_coding
description:
  CRISPR-associated protein, Csd1 family; Identified by match to protein family HMM PF09709; match to protein family HMM TIGR01863.


ensembl_gene_id: HMPREF7215_1798
symbol: EFB90882.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF05107; match to protein family HMM TIGR01595; match to protein family HMM TIGR02589.


ensembl_gene_id: HMPREF7215_1799
symbol: cas4
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: HMPREF7215_1800
symbol: cas1-2
gene_biotype: protein_coding
description:
  CRISPR-associated endonuclease Cas1, DVULG subtype; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: HMPREF7215_1801
symbol: cas2-2
gene_biotype: protein_coding
description:
  CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: HMPREF7215_1806
symbol: gltS
gene_biotype: protein_coding
description:
  Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.


ensembl_gene_id: HMPREF7215_1809
symbol: ftcD
gene_biotype: protein_coding
description:
  Glutamate formimidoyltransferase; Identified by match to protein family HMM PF02971; match to protein family HMM PF07837; match to protein family HMM TIGR02024.


ensembl_gene_id: HMPREF7215_1810
symbol: fchA
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04961.


ensembl_gene_id: HMPREF7215_1811
symbol: hydA
gene_biotype: protein_coding
description:
  Dihydropyrimidinase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.


ensembl_gene_id: HMPREF7215_1816
symbol: EFB90095.1
gene_biotype: protein_coding
description:
  Cation diffusion facilitator family transporter; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: HMPREF7215_1821
symbol: EFB90100.1
gene_biotype: protein_coding
description:
  Phosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM PF03807.


ensembl_gene_id: HMPREF7215_1825
symbol: EFB90104.1
gene_biotype: protein_coding
description:
  2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; Belongs to the ComB family.


ensembl_gene_id: HMPREF7215_1829
symbol: EFB90108.1
gene_biotype: protein_coding
description:
  3-oxoacid CoA-transferase, A subunit; Identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429.


ensembl_gene_id: HMPREF7215_1830
symbol: EFB90109.1
gene_biotype: protein_coding
description:
  3-oxoacid CoA-transferase, B subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428.


ensembl_gene_id: HMPREF7215_1831
symbol: EFB90110.1
gene_biotype: protein_coding
description:
  acetyl-CoA C-acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: HMPREF7215_1835
symbol: EFB90113.1
gene_biotype: protein_coding
description:
  Phosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF03446.


ensembl_gene_id: HMPREF7215_1840
symbol: EFB90118.1
gene_biotype: protein_coding
description:
  Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.


ensembl_gene_id: HMPREF7215_1844
symbol: EFB90123.1
gene_biotype: protein_coding
description:
  MATE domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01554.


ensembl_gene_id: HMPREF7215_1849
symbol: trkA
gene_biotype: protein_coding
description:
  Potassium transporter peripheral membrane component; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.


ensembl_gene_id: HMPREF7215_1853
symbol: EFB90793.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03401.


ensembl_gene_id: HMPREF7215_1854
symbol: EFB90523.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: HMPREF7215_1865
symbol: EFB90534.1
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit; Identified by match to protein family HMM PF00330; match to protein family HMM TIGR01343; match to protein family HMM TIGR02086.


ensembl_gene_id: HMPREF7215_1866
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase small subunit; Identified by match to protein family HMM PF00694; match to protein family HMM TIGR02087; Belongs to the LeuD family.


ensembl_gene_id: HMPREF7215_1880
symbol: trmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: HMPREF7215_1887
symbol: pcp
gene_biotype: protein_coding
description:
  Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.


ensembl_gene_id: HMPREF7215_1888
symbol: EFB90557.1
gene_biotype: protein_coding
description:
  Aminotransferase, class I/II; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00155.


ensembl_gene_id: HMPREF7215_1893
symbol: EFB91516.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts.


ensembl_gene_id: HMPREF7215_1896
symbol: EFB91519.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein, APE2256 family; Identified by match to protein family HMM PF09651; match to protein family HMM TIGR02619.


ensembl_gene_id: HMPREF7215_1898
symbol: cmr1
gene_biotype: protein_coding
description:
  CRISPR-associated RAMP protein, Cmr1 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01894.


ensembl_gene_id: HMPREF7215_1901
symbol: cmr4
gene_biotype: protein_coding
description:
  CRISPR-associated RAMP protein, Cmr4 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580.


ensembl_gene_id: HMPREF7215_1902
symbol: cmr5
gene_biotype: protein_coding
description:
  CRISPR-associated protein, Cmr5 family; Identified by match to protein family HMM PF09701; match to protein family HMM TIGR01881.


ensembl_gene_id: HMPREF7215_1903
symbol: cmr6
gene_biotype: protein_coding
description:
  CRISPR-associated RAMP protein, Cmr6 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01898.


ensembl_gene_id: HMPREF7215_1913
symbol: cpsA
gene_biotype: protein_coding
description:
  Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: HMPREF7215_1916
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.


ensembl_gene_id: HMPREF7215_1919
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: HMPREF7215_1928
symbol: EFB90416.1
gene_biotype: protein_coding
description:
  Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.


ensembl_gene_id: HMPREF7215_1930
symbol: EFB90418.1
gene_biotype: protein_coding
description:
  Putative opine dehydrogenase; Identified by match to protein family HMM PF01210; match to protein family HMM PF02317; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF7215_1938
symbol: sdaAA
gene_biotype: protein_coding
description:
  L-serine dehydratase, iron-sulfur-dependent, alpha subunit; Identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00718; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: HMPREF7215_1941
symbol: EFB90429.1
gene_biotype: protein_coding
description:
  SIS domain protein; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.


ensembl_gene_id: HMPREF7215_1945
symbol: EFB90433.1
gene_biotype: protein_coding
description:
  NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain protein; Identified by match to protein family HMM PF00899; match to protein family HMM PF01210; match to protein family HMM PF02317; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF7215_1965
symbol: EFB90963.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF7215_1966
symbol: speB
gene_biotype: protein_coding
description:
  Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.


ensembl_gene_id: HMPREF7215_1971
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.


ensembl_gene_id: HMPREF7215_1979
symbol: EFB90978.1
gene_biotype: protein_coding
description:
  Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326; match to protein family HMM PF02129.


ensembl_gene_id: HMPREF7215_1984
symbol: citF
gene_biotype: protein_coding
description:
  Citrate lyase, alpha subunit; Identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584.


ensembl_gene_id: HMPREF7215_1985
symbol: EFB89542.1
gene_biotype: protein_coding
description:
  Putative citrate (pro-3S)-lyase, beta subunit; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: HMPREF7215_1990
symbol: cynR
gene_biotype: protein_coding
description:
  Cyn operon transcriptional activator CynR; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF7215_1992
symbol: EFB89549.1
gene_biotype: protein_coding
description:
  ABC transporter, permease family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF7215_1997
symbol: EFB89554.1
gene_biotype: protein_coding
description:
  Transmembrane amino acid transporter protein; Identified by match to protein family HMM PF01490; match to protein family HMM PF03222.


ensembl_gene_id: HMPREF7215_2003
symbol: EFB89560.1
gene_biotype: protein_coding
description:
  MazG nucleotide pyrophosphohydrolase domain protein; Identified by match to protein family HMM PF03819.


ensembl_gene_id: HMPREF7215_2011
symbol: EFB89569.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.


ensembl_gene_id: HMPREF7215_2015
symbol: EFB89572.1
gene_biotype: protein_coding
description:
  Putative high-affinity zinc transporter periplasmic component; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_2021
symbol: EFB91638.1
gene_biotype: protein_coding
description:
  Citrate transporter; Identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM PF06808.


ensembl_gene_id: HMPREF7215_2026
symbol: EFB91643.1
gene_biotype: protein_coding
description:
  Phosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; Identified by match to protein family HMM PF03446.


ensembl_gene_id: HMPREF7215_2032
symbol: EFB91649.1
gene_biotype: protein_coding
description:
  ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: HMPREF7215_2039
symbol: feoB
gene_biotype: protein_coding
description:
  Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: HMPREF7215_2043
symbol: EFB91660.1
gene_biotype: protein_coding
description:
  Inosine 5-monophosphate dehydrogenase; Identified by match to protein family HMM PF00478; match to protein family HMM PF00571.


ensembl_gene_id: HMPREF7215_2048
symbol: EFB91665.1
gene_biotype: protein_coding
description:
  Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746.


ensembl_gene_id: HMPREF7215_2049
symbol: EFB91666.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: HMPREF7215_2057
symbol: EFB91674.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: HMPREF7215_2075
symbol: EFB90258.1
gene_biotype: protein_coding
description:
  Putative membrane protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00892; match to protein family HMM PF08449.


ensembl_gene_id: HMPREF7215_2077
symbol: EFB90440.1
gene_biotype: protein_coding
description:
  Phospholipase, patatin family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01734.


ensembl_gene_id: HMPREF7215_2078
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).


ensembl_gene_id: HMPREF7215_2080
symbol: EFB90444.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.


ensembl_gene_id: HMPREF7215_2087
symbol: pdxB-3
gene_biotype: protein_coding
description:
  4-phosphoerythronate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826.


ensembl_gene_id: HMPREF7215_2105
symbol: EFB90469.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctM-like membrane protein; Identified by match to protein family HMM PF03606; match to protein family HMM PF06808.


ensembl_gene_id: HMPREF7215_2110
symbol: ogt
gene_biotype: protein_coding
description:
  6-O-methylguanine DNA methyltransferase, DNA binding domain protein; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: HMPREF7215_2115
symbol: EFB90479.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: HMPREF7215_2116
symbol: EFB90480.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: HMPREF7215_2119
symbol: EFB90483.1
gene_biotype: protein_coding
description:
  Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.


ensembl_gene_id: HMPREF7215_2122
symbol: EFB90486.1
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by match to protein family HMM PF00892; match to protein family HMM PF08449.


ensembl_gene_id: HMPREF7215_2132
symbol: EFB90496.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctM subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00786.


ensembl_gene_id: HMPREF7215_2135
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: HMPREF7215_2139
symbol: EFB90503.1
gene_biotype: protein_coding
description:
  IclR helix-turn-helix domain protein; Identified by match to protein family HMM PF01614; match to protein family HMM PF09339.


ensembl_gene_id: HMPREF7215_2149
symbol: cobU
gene_biotype: protein_coding
description:
  Adenosylcobinamide kinase/adenosylcobinamidephosphate guanylyltransferase; Identified by match to protein family HMM PF02283.


ensembl_gene_id: HMPREF7215_2150
symbol: EFB90514.1
gene_biotype: protein_coding
description:
  SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271.


ensembl_gene_id: HMPREF7215_2153
symbol: EFB90517.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.


ensembl_gene_id: HMPREF7215_2162
symbol: EFB91781.1
gene_biotype: protein_coding
description:
  Putative dihydroxy-acid dehydratase; Identified by match to protein family HMM PF00920; Belongs to the IlvD/Edd family.


ensembl_gene_id: HMPREF7215_2163
symbol: EFB91782.1
gene_biotype: protein_coding
description:
  Citrate transporter; Identified by match to protein family HMM PF02447; match to protein family HMM PF03600.


ensembl_gene_id: HMPREF7215_2165
symbol: EFB91351.1
gene_biotype: protein_coding
description:
  Transaminase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00155.


ensembl_gene_id: HMPREF7215_2175
symbol: EFB91361.1
gene_biotype: protein_coding
description:
  Putative monovalent cation/H+ antiporter subunit E; Identified by match to protein family HMM PF01899.


ensembl_gene_id: HMPREF7215_2176
symbol: EFB91362.1
gene_biotype: protein_coding
description:
  Putative monovalent cation/H+ antiporter subunit F; Identified by match to protein family HMM PF04066.


ensembl_gene_id: HMPREF7215_2177
symbol: EFB91363.1
gene_biotype: protein_coding
description:
  Putative monovalent cation/H+ antiporter subunit G; Identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300.


ensembl_gene_id: HMPREF7215_2179
symbol: EFB91365.1
gene_biotype: protein_coding
description:
  Monovalent cation/H+ antiporter subunit B domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF7215_2180
symbol: EFB91366.1
gene_biotype: protein_coding
description:
  Putative monovalent cation/H+ antiporter subunit B; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04039.


ensembl_gene_id: HMPREF7215_2181
symbol: nuoK
gene_biotype: protein_coding
description:
  Putative monovalent cation/H+ antiporter subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: HMPREF7215_2182
symbol: EFB91368.1
gene_biotype: protein_coding
description:
  Putative monovalent cation/H+ antiporter subunit D; Identified by match to protein family HMM PF00361.


ensembl_gene_id: HMPREF7215_2185
symbol: EFB91371.1
gene_biotype: protein_coding
description:
  Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Identified by match to protein family HMM PF00329.


ensembl_gene_id: HMPREF7215_2186
symbol: EFB91372.1
gene_biotype: protein_coding
description:
  Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Identified by match to protein family HMM PF00346.


ensembl_gene_id: HMPREF7215_2197
symbol: EFB91382.1
gene_biotype: protein_coding
description:
  Putative proton-coupled thiamine transporter YuaJ; Identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357.


ensembl_gene_id: HMPREF7215_2202
symbol: EFB91387.1
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370.


ensembl_gene_id: HMPREF7215_2206
symbol: EFB91391.1
gene_biotype: protein_coding
description:
  Redoxin family protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: HMPREF7215_2208
symbol: EFB91394.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.


ensembl_gene_id: HMPREF7215_2212
symbol: pstS
gene_biotype: protein_coding
description:
  Phosphate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136.


ensembl_gene_id: HMPREF7215_2221
symbol: EFB91183.1
gene_biotype: protein_coding
description:
  Virulence factor MVIN; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03023.


ensembl_gene_id: HMPREF7215_2222
symbol: rpmG
gene_biotype: protein_coding
description:
  Ribosomal protein L33; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: HMPREF7215_2224
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: HMPREF7215_2225
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: HMPREF7215_2226
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: HMPREF7215_2227
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: HMPREF7215_2228
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: HMPREF7215_2230
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: HMPREF7215_2247
symbol: hypE
gene_biotype: protein_coding
description:
  Hydrogenase expression/formation protein HypE; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124.


ensembl_gene_id: HMPREF7215_2248
symbol: hypD
gene_biotype: protein_coding
description:
  Hydrogenase expression/formation protein HypD; Identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075.


ensembl_gene_id: HMPREF7215_2249
symbol: hypC
gene_biotype: protein_coding
description:
  Putative hydrogenase assembly chaperone HypC/HupF; Identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074.


ensembl_gene_id: HMPREF7215_2256
symbol: EFB90366.1
gene_biotype: protein_coding
description:
  Glycine/sarcosine/betaine reductase component B subunit alpha and beta; Identified by match to protein family HMM PF09338.


ensembl_gene_id: HMPREF7215_2262
symbol: thyX
gene_biotype: protein_coding
description:
  Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: HMPREF7215_2264
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: HMPREF7215_2265
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534.


ensembl_gene_id: HMPREF7215_2266
symbol: EFB90376.1
gene_biotype: protein_coding
description:
  Putative thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992.


ensembl_gene_id: HMPREF7215_2274
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: HMPREF7215_2275
symbol: grpE
gene_biotype: protein_coding
description:
  Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...]


ensembl_gene_id: HMPREF7215_2277
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: HMPREF7215_2278
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: HMPREF7215_2279
symbol: yqeV
gene_biotype: protein_coding
description:
  tRNA methylthiotransferase YqeV; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579.


ensembl_gene_id: HMPREF7215_2281
symbol: rpsU
gene_biotype: protein_coding
description:
  Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: HMPREF7215_2283
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: HMPREF7215_2284
symbol: pgsA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: HMPREF7215_2285
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: HMPREF7215_2287
symbol: argS
gene_biotype: protein_coding
description:
  arginine--tRNA ligase; Identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.


ensembl_gene_id: HMPREF7215_2289
symbol: EFB90399.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891.


ensembl_gene_id: HMPREF7215_2295
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: HMPREF7215_2298
symbol: dnaB
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: HMPREF7215_2301
symbol: panF
gene_biotype: protein_coding
description:
  Sodium/pantothenate symporter; Identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02119; overlaps another CDS with the same product name; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: HMPREF7215_2304
symbol: brnQ
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system II carrier protein; Identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796.


ensembl_gene_id: HMPREF7215_2311
symbol: hydE
gene_biotype: protein_coding
description:
  Iron-only hydrogenase maturation rSAM protein HydE; Identified by match to protein family HMM PF04055.


ensembl_gene_id: HMPREF7215_2314
symbol: EFB91612.1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: HMPREF7215_2316
symbol: EFB91614.1
gene_biotype: protein_coding
description:
  DivIVA domain protein; Identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544.


ensembl_gene_id: HMPREF7215_2317
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: HMPREF7215_2320
symbol: EFB91618.1
gene_biotype: protein_coding
description:
  Putative metallophosphoesterase; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282.


ensembl_gene_id: HMPREF7215_2321
symbol: EFB89913.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00395.


ensembl_gene_id: HMPREF7215_2328
symbol: EFB92049.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.


ensembl_gene_id: HMPREF7215_2330
symbol: EFB92051.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Identified by match to protein family HMM PF00528; overlaps another CDS with the same product name.


ensembl_gene_id: HMPREF7215_2338
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: HMPREF7215_2339
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: HMPREF7215_2340
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: HMPREF7215_2342
symbol: rpsP
gene_biotype: protein_coding
description:
  Ribosomal protein S16; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: HMPREF7215_2343
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959.


ensembl_gene_id: HMPREF7215_2344
symbol: EFB90559.1
gene_biotype: protein_coding
description:
  Helix-turn-helix protein, YlxM/p13 family; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.


ensembl_gene_id: HMPREF7215_2348
symbol: hutH
gene_biotype: protein_coding
description:
  Histidine ammonia-lyase; Identified by match to protein family HMM PF00221; match to protein family HMM TIGR01225.


ensembl_gene_id: HMPREF7215_2349
symbol: hutU
gene_biotype: protein_coding
description:
  Urocanate hydratase; Identified by match to protein family HMM PF01175; match to protein family HMM TIGR01228.


ensembl_gene_id: HMPREF7215_2350
symbol: hutI
gene_biotype: protein_coding
description:
  Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224.


ensembl_gene_id: HMPREF7215_2367
symbol: cbiK
gene_biotype: protein_coding
description:
  Cobalt chelatase (CbiK); Identified by match to protein family HMM PF01903; match to protein family HMM PF06180.


ensembl_gene_id: HMPREF7215_2371
symbol: EFB90582.1
gene_biotype: protein_coding
description:
  Putative precorrin-2 C(20)-methyltransferase; Identified by match to protein family HMM PF00590; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: HMPREF7215_2374
symbol: cbiD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.


ensembl_gene_id: HMPREF7215_2376
symbol: cbiT
gene_biotype: protein_coding
description:
  precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.


ensembl_gene_id: HMPREF7215_2377
symbol: cobM
gene_biotype: protein_coding
description:
  Precorrin-4 C(11)-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: HMPREF7215_2379
symbol: cobJ
gene_biotype: protein_coding
description:
  precorrin-3B C(17)-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466.


ensembl_gene_id: HMPREF7215_2380
symbol: cobK
gene_biotype: protein_coding
description:
  precorrin-6A reductase; Identified by match to protein family HMM PF02571; match to protein family HMM TIGR00715; match to protein family HMM TIGR01470.


ensembl_gene_id: HMPREF7215_2381
symbol: hemC
gene_biotype: protein_coding
description:
  Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.


ensembl_gene_id: HMPREF7215_2383
symbol: cobA
gene_biotype: protein_coding
description:
  uroporphyrinogen-III C-methyltransferase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.


ensembl_gene_id: HMPREF7215_2384
symbol: hemB
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.


ensembl_gene_id: HMPREF7215_2385
symbol: cobB
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: HMPREF7215_2386
symbol: EFB90903.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.


ensembl_gene_id: HMPREF7215_2392
symbol: EFB90909.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: HMPREF7215_2395
symbol: sufC
gene_biotype: protein_coding
description:
  FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.


ensembl_gene_id: HMPREF7215_2396
symbol: sufB
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.


ensembl_gene_id: HMPREF7215_2398
symbol: sufS
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: HMPREF7215_2399
symbol: EFB90916.1
gene_biotype: protein_coding
description:
  SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.


ensembl_gene_id: HMPREF7215_2401
symbol: EFB90918.1
gene_biotype: protein_coding
description:
  Aminopeptidase I zinc metalloprotease (M18); This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02127; match to protein family HMM PF05343.


ensembl_gene_id: HMPREF7215_2406
symbol: EFB89671.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate anaerobic carrier; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF03606.


ensembl_gene_id: HMPREF7215_2411
symbol: EFB89676.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Spx/MgsR family; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family.


ensembl_gene_id: HMPREF7215_2412
symbol: EFB89677.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518.


ensembl_gene_id: HMPREF7215_2415
symbol: fprA
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00258; match to protein family HMM PF00753.


ensembl_gene_id: HMPREF7215_2419
symbol: EFB89684.1
gene_biotype: protein_coding
description:
  Malic enzyme, NAD binding domain protein; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949.


ensembl_gene_id: HMPREF7215_2421
symbol: citE
gene_biotype: protein_coding
description:
  Citrate lyase subunit beta; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: HMPREF7215_2423
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: HMPREF7215_2424
symbol: leuD-2
gene_biotype: protein_coding
description:
  Isopropylmalate/citramalate isomerase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily.


ensembl_gene_id: HMPREF7215_2434
symbol: EFB89696.1
gene_biotype: protein_coding
description:
  Hydrogenase maturation protease; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072.


ensembl_gene_id: HMPREF7215_2435
symbol: mviN
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: HMPREF7215_2438
symbol: gcp
gene_biotype: protein_coding
description:
  Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: HMPREF7215_2439
symbol: EFB89701.1
gene_biotype: protein_coding
description:
  Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.


ensembl_gene_id: HMPREF7215_2456
symbol: EFB90211.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02518.


ensembl_gene_id: HMPREF7215_2457
symbol: EFB90212.1
gene_biotype: protein_coding
description:
  Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: HMPREF7215_2459
symbol: grdH
gene_biotype: protein_coding
description:
  Betaine reductase complex component B subunit beta; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF07355; match to protein family HMM TIGR01918.


ensembl_gene_id: HMPREF7215_2461
symbol: EFB90216.1
gene_biotype: protein_coding
description:
  Transporter, betaine/carnitine/choline family; Identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: HMPREF7215_2464
symbol: EFB90982.1
gene_biotype: protein_coding
description:
  Putative nickel-responsive transcriptional regulator NikR; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.


ensembl_gene_id: HMPREF7215_2466
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: HMPREF7215_2469
symbol: EFB90987.1
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF04324.


ensembl_gene_id: HMPREF7215_2470
symbol: EFB90988.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992.


ensembl_gene_id: HMPREF7215_2480
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: HMPREF7215_2485
symbol: FbpA
gene_biotype: protein_coding
description:
  Fibronectin-binding protein A domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF05670; match to protein family HMM PF05833.


ensembl_gene_id: HMPREF7215_2495
symbol: EFB92002.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07848.


ensembl_gene_id: HMPREF7215_2497
symbol: EFB90853.1
gene_biotype: protein_coding
description:
  Fic family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02661.


ensembl_gene_id: HMPREF7215_2502
symbol: thiM
gene_biotype: protein_coding
description:
  Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family.


ensembl_gene_id: HMPREF7215_2503
symbol: ddl
gene_biotype: protein_coding
description:
  D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: HMPREF7215_2505
symbol: EFB92072.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 5; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00496.


ensembl_gene_id: HMPREF7215_2511
symbol: EFB89887.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00005.


ensembl_gene_id: HMPREF7215_2518
symbol: pssA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol-serine O-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: HMPREF7215_2519
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: HMPREF7215_2520
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: HMPREF7215_2521
symbol: EFB89897.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04474.


ensembl_gene_id: HMPREF7215_2530
symbol: EFB91418.1
gene_biotype: protein_coding
description:
  Cytidine and deoxycytidylate deaminase zinc-binding region; Identified by match to protein family HMM PF00383.


ensembl_gene_id: HMPREF7215_2531
symbol: EFB91419.1
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF07521.


ensembl_gene_id: HMPREF7215_2532
symbol: EFB91420.1
gene_biotype: protein_coding
description:
  5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: HMPREF7215_2533
symbol: EFB91421.1
gene_biotype: protein_coding
description:
  Oxidoreductase, 2-nitropropane dioxygenase family protein; Identified by match to protein family HMM PF03060.


ensembl_gene_id: HMPREF7215_2538
symbol: EFB91426.1
gene_biotype: protein_coding
description:
  acyl-CoA thioester hydrolase, YbgC/YbaW family; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051.


ensembl_gene_id: HMPREF7215_2539
symbol: EFB91427.1
gene_biotype: protein_coding
description:
  Peptidase C26; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.


ensembl_gene_id: HMPREF7215_2542
symbol: EFB91430.1
gene_biotype: protein_coding
description:
  4Fe-4S binding domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00037.


ensembl_gene_id: HMPREF7215_2549
symbol: galE
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08659; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: HMPREF7215_2551
symbol: EFB89737.1
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase; Identified by match to protein family HMM PF00940; DNA-directed RNA polymerase, bacteriophage and type.


ensembl_gene_id: HMPREF7215_2580
symbol: EFB89766.1
gene_biotype: protein_coding
description:
  Collagen triple helix repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01391.


ensembl_gene_id: HMPREF7215_2594
symbol: EFB89780.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by glimmer; putative.


ensembl_gene_id: HMPREF7215_2608
symbol: cysS
gene_biotype: protein_coding
description:
  cysteine--tRNA ligase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF7215_2609
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: HMPREF7215_2610
symbol: ribD
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: HMPREF7215_2611
symbol: ribE
gene_biotype: protein_coding
description:
  Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.


ensembl_gene_id: HMPREF7215_2612
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: HMPREF7215_2614
symbol: serS
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: HMPREF7215_2615
symbol: EFB89800.1
gene_biotype: protein_coding
description:
  Glycosyltransferase, WecB/TagA/CpsF family; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: HMPREF7215_2618
symbol: EFB89803.1
gene_biotype: protein_coding
description:
  Putative V-type sodium ATPase, I subunit; Identified by glimmer; putative; Belongs to the V-ATPase 116 kDa subunit family.


ensembl_gene_id: HMPREF7215_2626
symbol: rlmH
gene_biotype: protein_coding
description:
  Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: HMPREF7215_2627
symbol: EFB89812.1
gene_biotype: protein_coding
description:
  DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: HMPREF7215_2628
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: HMPREF7215_2629
symbol: EFB89814.1
gene_biotype: protein_coding
description:
  PIN domain protein; Identified by match to protein family HMM PF01850; match to protein family HMM PF01938.


ensembl_gene_id: HMPREF7215_2630
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: HMPREF7215_2631
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: HMPREF7215_2632
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: HMPREF7215_2634
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: HMPREF7215_2635
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: HMPREF7215_2636
symbol: EFB89821.1
gene_biotype: protein_coding
description:
  DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.


ensembl_gene_id: HMPREF7215_2637
symbol: EFB89822.1
gene_biotype: protein_coding
description:
  Putative tRNA pseudouridine synthase B; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01509; Belongs to the pseudouridine synthase TruB family.


ensembl_gene_id: HMPREF7215_2639
symbol: ribF
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.


ensembl_gene_id: HMPREF7215_2641
symbol: EFB90922.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.


ensembl_gene_id: HMPREF7215_2647
symbol: EFB90927.1
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01791.


ensembl_gene_id: HMPREF7215_2652
symbol: EFB90931.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctM subunit; Identified by match to protein family HMM PF03606; match to protein family HMM PF06808; match to protein family HMM TIGR00786.


ensembl_gene_id: HMPREF7215_2656
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: HMPREF7215_2659
symbol: ahpC
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: HMPREF7215_2660
symbol: EFB90940.1
gene_biotype: protein_coding
description:
  Putative thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF04820; match to protein family HMM PF07992.


ensembl_gene_id: HMPREF7215_2669
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: HMPREF7215_2670
symbol: leuS
gene_biotype: protein_coding
description:
  leucine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: HMPREF7215_2671
symbol: EFB90951.1
gene_biotype: protein_coding
description:
  Putative DNA polymerase III, delta subunit; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_2674
symbol: rpmH
gene_biotype: protein_coding
description:
  Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: HMPREF7215_2675
symbol: EFB89320.1
gene_biotype: protein_coding
description:
  Hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: HMPREF7215_2676
symbol: EFB89321.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: HMPREF7215_2677
symbol: EFB89322.1
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family; Identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592.


ensembl_gene_id: HMPREF7215_2679
symbol: EFB89324.1
gene_biotype: protein_coding
description:
  Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326; match to protein family HMM PF01738.


ensembl_gene_id: HMPREF7215_2687
symbol: sdaAB
gene_biotype: protein_coding
description:
  L-serine dehydratase, iron-sulfur-dependent, beta subunit; Identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: HMPREF7215_2690
symbol: metF
gene_biotype: protein_coding
description:
  Methylenetetrahydrofolate reductase (NAD(P)H); Identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: HMPREF7215_2691
symbol: EFB90220.1
gene_biotype: protein_coding
description:
  Vitamin B12 dependent methionine synthase, activation domain protein; Identified by match to protein family HMM PF02965.


ensembl_gene_id: HMPREF7215_2692
symbol: EFB90221.1
gene_biotype: protein_coding
description:
  Putative 5-methyltetrahydrofolate--homocysteine methyltransferase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.


ensembl_gene_id: HMPREF7215_2696
symbol: EFB90225.1
gene_biotype: protein_coding
description:
  Arsenite-activated ATPase (arsA); Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345.


ensembl_gene_id: HMPREF7215_2700
symbol: mraZ
gene_biotype: protein_coding
description:
  Protein MraZ; Identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242; Belongs to the MraZ family.


ensembl_gene_id: HMPREF7215_2701
symbol: mraW
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: HMPREF7215_2703
symbol: EFB90231.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.


ensembl_gene_id: HMPREF7215_2704
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: HMPREF7215_2705
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: HMPREF7215_2706
symbol: EFB90234.1
gene_biotype: protein_coding
description:
  Putative phospho-N-acetylmuramoyl-pentapeptide-transferase; Identified by match to protein family HMM PF00953.


ensembl_gene_id: HMPREF7215_2707
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: HMPREF7215_2708
symbol: EFB90236.1
gene_biotype: protein_coding
description:
  Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.


ensembl_gene_id: HMPREF7215_2709
symbol: EFB90237.1
gene_biotype: protein_coding
description:
  Glycosyltransferase family 28 N-terminal domain protein; Identified by match to protein family HMM PF03033; match to protein family HMM PF04101.


ensembl_gene_id: HMPREF7215_2712
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: HMPREF7215_2713
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: HMPREF7215_2716
symbol: EFB90244.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: HMPREF7215_2718
symbol: gap
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: HMPREF7215_2719
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: HMPREF7215_2724
symbol: EFB89852.1
gene_biotype: protein_coding
description:
  Flavin reductase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03358.


ensembl_gene_id: HMPREF7215_2732
symbol: EFB89860.1
gene_biotype: protein_coding
description:
  4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00248.


ensembl_gene_id: HMPREF7215_2735
symbol: EFB89862.1
gene_biotype: protein_coding
description:
  V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family.


ensembl_gene_id: HMPREF7215_2740
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: HMPREF7215_2741
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.


ensembl_gene_id: HMPREF7215_2742
symbol: atpD
gene_biotype: protein_coding
description:
  V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: HMPREF7215_2743
symbol: EFB91309.1
gene_biotype: protein_coding
description:
  Hydrid cluster protein-associated redox disulfide domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF7215_2744
symbol: EFB91310.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00614; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.


ensembl_gene_id: HMPREF7215_2746
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: HMPREF7215_2752
symbol: EFB91316.1
gene_biotype: protein_coding
description:
  D12 class N6 adenine-specific DNA methyltransferase; Identified by match to protein family HMM PF02086.


ensembl_gene_id: HMPREF7215_2778
symbol: EFB91342.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, toxin component, HicA family; Identified by match to protein family HMM PF07927.


ensembl_gene_id: HMPREF7215_2780
symbol: EFB91344.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; overlaps another CDS with the same product name.


ensembl_gene_id: HMPREF7215_2782
symbol: EFB91346.1
gene_biotype: protein_coding
description:
  Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876.


ensembl_gene_id: HMPREF7215_2784
symbol: EFB91348.1
gene_biotype: protein_coding
description:
  Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.


ensembl_gene_id: HMPREF7215_2785
symbol: EFB91349.1
gene_biotype: protein_coding
description:
  Caudovirus prohead protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04586.


ensembl_gene_id: HMPREF7215_2795
symbol: EFB89924.1
gene_biotype: protein_coding
description:
  Phage tail tape measure protein, TP901 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM TIGR01760.


ensembl_gene_id: HMPREF7215_2805
symbol: EFB91544.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; paar.


ensembl_gene_id: HMPREF7215_2819
symbol: citG
gene_biotype: protein_coding
description:
  triphosphoribosyl-dephospho-CoA synthase CitG; Identified by match to protein family HMM PF01874; match to protein family HMM PF03802; match to protein family HMM TIGR03124; match to protein family HMM TIGR03125.


ensembl_gene_id: HMPREF7215_2820
symbol: EFB91559.1
gene_biotype: protein_coding
description:
  Putative uncharacterized protein, PH0010 family; Identified by match to protein family HMM PF01871; match to protein family HMM PF02900.


ensembl_gene_id: HMPREF7215_2823
symbol: glnA
gene_biotype: protein_coding
description:
  Glutamate--ammonia ligase, catalytic domain protein; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.


ensembl_gene_id: HMPREF7215_2825
symbol: cobO
gene_biotype: protein_coding
description:
  cob(I)yrinic acid a,c-diamide adenosyltransferase; Identified by match to protein family HMM PF02572; match to protein family HMM TIGR00708.


ensembl_gene_id: HMPREF7215_2826
symbol: ptsP
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: HMPREF7215_2827
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: HMPREF7215_2828
symbol: groEL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Belongs to the chaperonin (HSP60) family.


ensembl_gene_id: HMPREF7215_2830
symbol: EFB91620.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.


ensembl_gene_id: HMPREF7215_2835
symbol: EFB91005.1
gene_biotype: protein_coding
description:
  Transposase, IS4 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01609.


