# geneInfo

ensembl_gene_id: Fnod_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: Fnod_0002
symbol: Fnod_0002
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpt:Tpet_0002 tRNA (guanine-N(7)-)-methyltransferase.


ensembl_gene_id: Fnod_0005
symbol: Fnod_0005
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0103 simple sugar transport system ATP-binding protein.


ensembl_gene_id: Fnod_0007
symbol: Fnod_0007
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: tpt:Tpet_0819 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Fnod_0010
symbol: Fnod_0010
gene_biotype: protein_coding
description:
  PFAM: histone family protein DNA-binding protein; KEGG: tpt:Tpet_0658 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: Fnod_0011
symbol: Fnod_0011
gene_biotype: protein_coding
description:
  PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gur:Gura_1941 metal dependent phosphohydrolase.


ensembl_gene_id: Fnod_0015
symbol: Fnod_0015
gene_biotype: protein_coding
description:
  Putative adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sat:SYN_01481 adenylate cyclase.


ensembl_gene_id: Fnod_0017
symbol: Fnod_0017
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0047; KEGG: mxa:MXAN_2547 conserved hypothetical protein TIGR00149.


ensembl_gene_id: Fnod_0018
symbol: Fnod_0018
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: sth:STH1831 transcriptional regulator.


ensembl_gene_id: Fnod_0023
symbol: Fnod_0023
gene_biotype: protein_coding
description:
  PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: tpt:Tpet_0335 UDP-glucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: Fnod_0025
symbol: Fnod_0025
gene_biotype: protein_coding
description:
  PFAM: lipopolysaccharide biosynthesis protein; KEGG: tpt:Tpet_0285 lipopolysaccharide biosynthesis protein.


ensembl_gene_id: Fnod_0028
symbol: Fnod_0028
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: tpt:Tpet_0979 putative cold-shock DNA-binding domain protein.


ensembl_gene_id: Fnod_0029
symbol: Fnod_0029
gene_biotype: protein_coding
description:
  TIGRFAM: putative regulatory protein, FmdB family; KEGG: tpt:Tpet_0781 putative regulatory protein, FmdB family.


ensembl_gene_id: Fnod_0031
symbol: Fnod_0031
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tdn:Tmden_0836 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: Fnod_0032
symbol: Fnod_0032
gene_biotype: protein_coding
description:
  Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cth:Cthe_0693 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Fnod_0036
symbol: Fnod_0036
gene_biotype: protein_coding
description:
  KEGG: cac:CAC1009 cell wall biogenesis enzyme (N-terminal domain related to N-acetylmuramoyl-L-alanine amidase and C-terminal domain related to L-alanoyl-D-glutamate peptidase); peptodoglycan-binding domain.


ensembl_gene_id: Fnod_0038
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: Fnod_0040
symbol: Fnod_0040
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: tpt:Tpet_0041 glycosyl transferase, family 51.


ensembl_gene_id: Fnod_0041
symbol: Fnod_0041
gene_biotype: protein_coding
description:
  TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: tma:TM0887 methylated-DNA-protein-cysteine methyltransferase.


ensembl_gene_id: Fnod_0043
symbol: Fnod_0043
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tpt:Tpet_0515 thiamine pyrophosphate enzyme domain protein TPP-binding.


ensembl_gene_id: Fnod_0044
symbol: Fnod_0044
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tpt:Tpet_0514 pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: Fnod_0046
symbol: cheB
gene_biotype: protein_coding
description:
  Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: Fnod_0048
symbol: Fnod_0048
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; KEGG: tma:TM0920 alcohol dehydrogenase, iron-containing.


ensembl_gene_id: Fnod_0049
symbol: Fnod_0049
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: fnu:FN1896 ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Fnod_0050
symbol: Fnod_0050
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: fnu:FN1897 ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Fnod_0051
symbol: Fnod_0051
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN1898 sugar transport ATP-binding protein.


ensembl_gene_id: Fnod_0053
symbol: Fnod_0053
gene_biotype: protein_coding
description:
  Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.


ensembl_gene_id: Fnod_0054
symbol: Fnod_0054
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: mse:Msed_1596 pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: Fnod_0055
symbol: Fnod_0055
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tpt:Tpet_1585 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.


ensembl_gene_id: Fnod_0056
symbol: Fnod_0056
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tpt:Tpet_1584 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit.


ensembl_gene_id: Fnod_0057
symbol: Fnod_0057
gene_biotype: protein_coding
description:
  PFAM: nitroreductase; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tma:TM0386 bacterioferritin comigratory protein/NADH dehydrogenase.


ensembl_gene_id: Fnod_0060
symbol: Fnod_0060
gene_biotype: protein_coding
description:
  PFAM: nuclease (SNase domain protein); KEGG: chy:CHY_1698 prophage LambdaCh01, nuclease domain protein.


ensembl_gene_id: Fnod_0061
symbol: Fnod_0061
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tpt:Tpet_0172 glycosyl transferase, family 2.


ensembl_gene_id: Fnod_0063
symbol: Fnod_0063
gene_biotype: protein_coding
description:
  Aminotransferase class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: cbo:CBO1804 aspartate aminotransferase.


ensembl_gene_id: Fnod_0069
symbol: Fnod_0069
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cac:CAC0818 diguanylate cyclase/phosphodiesterase domain (GGDEF) containing protein.


ensembl_gene_id: Fnod_0070
symbol: Fnod_0070
gene_biotype: protein_coding
description:
  TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: tpt:Tpet_1269 aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Fnod_0071
symbol: Fnod_0071
gene_biotype: protein_coding
description:
  PFAM: diaminopimelate epimerase; KEGG: tma:TM1522 diaminopimelate epimerase; Belongs to the diaminopimelate epimerase family.


ensembl_gene_id: Fnod_0072
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Fnod_0073
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: Fnod_0074
symbol: dapH
gene_biotype: protein_coding
description:
  Tetrahydrodipicolinate succinyltransferase domain protein; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.


ensembl_gene_id: Fnod_0075
symbol: Fnod_0075
gene_biotype: protein_coding
description:
  TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: tma:TM1518 aspartokinase II; Belongs to the aspartokinase family.


ensembl_gene_id: Fnod_0076
symbol: Fnod_0076
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: aae:aq_023 acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Fnod_0081
symbol: Fnod_0081
gene_biotype: protein_coding
description:
  TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tma:TM1516 hydrolase, ama/HipO/HyuC family.


ensembl_gene_id: Fnod_0085
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Fnod_0086
symbol: Fnod_0086
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: gur:Gura_1789 uncharacterised conserved protein UCP033563.


ensembl_gene_id: Fnod_0087
symbol: Fnod_0087
gene_biotype: protein_coding
description:
  PFAM: helix-hairpin-helix motif; protein of unknown function DUF147; KEGG: tma:TM0200 hypothetical protein; Belongs to the DisA family.


ensembl_gene_id: Fnod_0090
symbol: Fnod_0090
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1054 ABC transporter, ATP-binding protein.


ensembl_gene_id: Fnod_0093
symbol: Fnod_0093
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tma:TM0467 regulatory protein, putative.


ensembl_gene_id: Fnod_0094
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Fnod_0096
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Fnod_0098
symbol: Fnod_0098
gene_biotype: protein_coding
description:
  TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; KEGG: tma:TM0040 dihydropteroate synthase.


ensembl_gene_id: Fnod_0099
symbol: Fnod_0099
gene_biotype: protein_coding
description:
  PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: tpt:Tpet_0660 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Fnod_0102
symbol: Fnod_0102
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: tma:TM0374 heat shock protein, class I; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Fnod_0103
symbol: Fnod_0103
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: tma:TM1401 D-3-phosphoglycerate dehydrogenase.


ensembl_gene_id: Fnod_0105
symbol: Fnod_0105
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: tma:TM1131 aminotransferase, putative.


ensembl_gene_id: Fnod_0106
symbol: buk
gene_biotype: protein_coding
description:
  TIGRFAM: Butyrate kinase; PFAM: acetate and butyrate kinase; KEGG: tpt:Tpet_1041 butyrate kinase; Belongs to the acetokinase family.


ensembl_gene_id: Fnod_0108
symbol: buk-2
gene_biotype: protein_coding
description:
  TIGRFAM: Butyrate kinase; PFAM: acetate and butyrate kinase; KEGG: tma:TM1756 putative butyrate kinase 2; Belongs to the acetokinase family.


ensembl_gene_id: Fnod_0110
symbol: Fnod_0110
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tma:TM1758 2-oxoisovalerate ferredoxin oxidoreductase, delta subunit.


ensembl_gene_id: Fnod_0111
symbol: Fnod_0111
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tpt:Tpet_1046 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.


ensembl_gene_id: Fnod_0112
symbol: Fnod_0112
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tpt:Tpet_1047 thiamine pyrophosphate enzyme domain protein TPP-binding.


ensembl_gene_id: Fnod_0113
symbol: Fnod_0113
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tpt:Tpet_1048 pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: Fnod_0116
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: Fnod_0121
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: Fnod_0122
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HSR1-related; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: Fnod_0125
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: Fnod_0128
symbol: Fnod_0128
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tpt:Tpet_0900 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Fnod_0129
symbol: Fnod_0129
gene_biotype: protein_coding
description:
  TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; KEGG: tvo:TVN1353 histidine ammonia-lyase.


ensembl_gene_id: Fnod_0130
symbol: Fnod_0130
gene_biotype: protein_coding
description:
  TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: tko:TK1045 cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: Fnod_0136
symbol: Fnod_0136
gene_biotype: protein_coding
description:
  TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; Acetohydroxy acid isomeroreductase catalytic domain protein; KEGG: tpt:Tpet_0753 adenosylhomocysteinase.


ensembl_gene_id: Fnod_0138
symbol: Fnod_0138
gene_biotype: protein_coding
description:
  PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: tma:TM0837 general secretion pathway protein E.


ensembl_gene_id: Fnod_0139
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: Fnod_0140
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: Fnod_0142
symbol: Fnod_0142
gene_biotype: protein_coding
description:
  PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF323; KEGG: cph:Cpha266_2259 protein of unknown function DUF323.


ensembl_gene_id: Fnod_0145
symbol: Fnod_0145
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: tpt:Tpet_0413 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Fnod_0147
symbol: Fnod_0147
gene_biotype: protein_coding
description:
  TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: ttj:TTHA0718 uracil-DNA glycosylase.


ensembl_gene_id: Fnod_0148
symbol: Fnod_0148
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2015 ABC transporter ATP-binding protein.


ensembl_gene_id: Fnod_0149
symbol: Fnod_0149
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1824 ABC transporter, ATP-binding protein.


ensembl_gene_id: Fnod_0152
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: Fnod_0153
symbol: Fnod_0153
gene_biotype: protein_coding
description:
  Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: Fnod_0155
symbol: nadK
gene_biotype: protein_coding
description:
  NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Fnod_0158
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: Fnod_0159
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: Fnod_0161
symbol: Fnod_0161
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0582 hypothetical protein.


ensembl_gene_id: Fnod_0162
symbol: Fnod_0162
gene_biotype: protein_coding
description:
  Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: Fnod_0163
symbol: Fnod_0163
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_1495 ABC transporter related.


ensembl_gene_id: Fnod_0165
symbol: Fnod_0165
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0824 AstB/ChuR-related protein.


ensembl_gene_id: Fnod_0170
symbol: Fnod_0170
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: tpt:Tpet_1766 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Fnod_0172
symbol: Fnod_0172
gene_biotype: protein_coding
description:
  PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: tma:TM0594 hypothetical protein.


ensembl_gene_id: Fnod_0174
symbol: Fnod_0174
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tma:TM0668 pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Fnod_0177
symbol: Fnod_0177
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Fnod_0181
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: Fnod_0182
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: Fnod_0183
symbol: Fnod_0183
gene_biotype: protein_coding
description:
  PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: lmo:lmo1086 similar to CDP-ribitol pyrophosphorylase; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.


ensembl_gene_id: Fnod_0185
symbol: Fnod_0185
gene_biotype: protein_coding
description:
  TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tpt:Tpet_0694 phosphodiesterase, MJ0936 family.


ensembl_gene_id: Fnod_0188
symbol: Fnod_0188
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: tpt:Tpet_0322 extracellular solute-binding protein, family 1.


ensembl_gene_id: Fnod_0192
symbol: Fnod_0192
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0500 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Fnod_0193
symbol: Fnod_0193
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_0419 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Fnod_0194
symbol: Fnod_0194
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0418 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0195
symbol: Fnod_0195
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0417 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0196
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: Fnod_0197
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Fnod_0198
symbol: Fnod_0198
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tma:TM0804 histidinol-phosphatase; Belongs to the PHP hydrolase family. HisK subfamily.


ensembl_gene_id: Fnod_0199
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: Fnod_0202
symbol: Fnod_0202
gene_biotype: protein_coding
description:
  PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE0727 D-lysine 5,6-aminomutase beta subunit.


ensembl_gene_id: Fnod_0203
symbol: Fnod_0203
gene_biotype: protein_coding
description:
  PFAM: D-Lysine 56-aminomutase alpha subunit; KEGG: tte:TTE0726 D-lysine 5,6-aminomutase alpha subunit.


ensembl_gene_id: Fnod_0207
symbol: Fnod_0207
gene_biotype: protein_coding
description:
  TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: fnu:FN1866 lysine 2,3-aminomutase.


ensembl_gene_id: Fnod_0211
symbol: Fnod_0211
gene_biotype: protein_coding
description:
  TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: rru:Rru_A1471 butyrate-acetoacetate CoA-transferase.


ensembl_gene_id: Fnod_0212
symbol: Fnod_0212
gene_biotype: protein_coding
description:
  TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: tte:TTE0720 Acyl-CoA:acetate CoA transferase alpha subunit.


ensembl_gene_id: Fnod_0213
symbol: Fnod_0213
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF152; KEGG: cth:Cthe_0911 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: Fnod_0216
symbol: Fnod_0216
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase PA-phosphatase related; KEGG: gme:Gmet_1347 phosphoesterase, PA-phosphatase related.


ensembl_gene_id: Fnod_0217
symbol: Fnod_0217
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; aminotransferase class I and II; KEGG: cac:CAC2970 PLP-dependent aminotransferase.


ensembl_gene_id: Fnod_0219
symbol: Fnod_0219
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_1960 diguanylate cyclase with PAS/PAC sensor.


ensembl_gene_id: Fnod_0221
symbol: Fnod_0221
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tpt:Tpet_0969 alpha amylase, catalytic region.


ensembl_gene_id: Fnod_0223
symbol: Fnod_0223
gene_biotype: protein_coding
description:
  TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate transcarbamylase regulatory subunit; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: tpt:Tpet_1149 aspartate carbamoyltransferase.


ensembl_gene_id: Fnod_0224
symbol: rex
gene_biotype: protein_coding
description:
  CoA-binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: Fnod_0225
symbol: Fnod_0225
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: tma:TM1426 NADH dehydrogenase I chain G.


ensembl_gene_id: Fnod_0226
symbol: Fnod_0226
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tma:TM1425 NADH dehydrogenase I chain F.


ensembl_gene_id: Fnod_0227
symbol: Fnod_0227
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tma:TM1424 NADH dehydrogenase I chain E.


ensembl_gene_id: Fnod_0229
symbol: Fnod_0229
gene_biotype: protein_coding
description:
  PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tma:TM1034 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: Fnod_0230
symbol: Fnod_0230
gene_biotype: protein_coding
description:
  TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: tma:TM0381 dihydrolipoamide dehydrogenase.


ensembl_gene_id: Fnod_0232
symbol: Fnod_0232
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: tpt:Tpet_0387 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family.


ensembl_gene_id: Fnod_0233
symbol: Fnod_0233
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tpt:Tpet_1037 HAD-superfamily hydrolase, subfamily IIA; Belongs to the HAD-like hydrolase superfamily.


ensembl_gene_id: Fnod_0236
symbol: Fnod_0236
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: tma:TM0201 NADH dehydrogenase I chain G.


ensembl_gene_id: Fnod_0238
symbol: Fnod_0238
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: tma:TM1267 thiH protein, putative.


ensembl_gene_id: Fnod_0240
symbol: Fnod_0240
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tpt:Tpet_1502 radical SAM domain protein.


ensembl_gene_id: Fnod_0242
symbol: Fnod_0242
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0721 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0243
symbol: Fnod_0243
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_0339 putative sulfonate transport system ATP-binding protein.


ensembl_gene_id: Fnod_0244
symbol: Fnod_0244
gene_biotype: protein_coding
description:
  KEGG: tpt:Tpet_0722 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.


ensembl_gene_id: Fnod_0245
symbol: Fnod_0245
gene_biotype: protein_coding
description:
  TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: tpt:Tpet_0475 small GTP-binding protein.


ensembl_gene_id: Fnod_0247
symbol: Fnod_0247
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 4; KEGG: tma:TM0805 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase.


ensembl_gene_id: Fnod_0249
symbol: Fnod_0249
gene_biotype: protein_coding
description:
  PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: tva:TVAG_243650 Transposase family protein.


ensembl_gene_id: Fnod_0254
symbol: Fnod_0254
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0793 putative ABC-2 type transport system ATP-binding protein.


ensembl_gene_id: Fnod_0256
symbol: Fnod_0256
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: tpt:Tpet_0845 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Fnod_0257
symbol: Fnod_0257
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: tma:TM0080 putative iron(III) transport system substrate-binding protein.


ensembl_gene_id: Fnod_0259
symbol: Fnod_0259
gene_biotype: protein_coding
description:
  Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: Fnod_0261
symbol: Fnod_0261
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: tma:TM0943 glutamine synthetase.


ensembl_gene_id: Fnod_0262
symbol: Fnod_0262
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tpt:Tpet_0582 radical SAM N-terminal domain protein.


ensembl_gene_id: Fnod_0264
symbol: Fnod_0264
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: Fnod_0265
symbol: Fnod_0265
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tpt:Tpet_1197 phosphoesterase, RecJ domain protein.


ensembl_gene_id: Fnod_0266
symbol: Fnod_0266
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tma:TM1594 conserved hypothetical protein, GGDEF domain.


ensembl_gene_id: Fnod_0269
symbol: Fnod_0269
gene_biotype: protein_coding
description:
  PFAM: peptidase M18 aminopeptidase I; peptidase M42 family protein; KEGG: tma:TM0365 aminopeptidase, putative.


ensembl_gene_id: Fnod_0276
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: Fnod_0277
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Fnod_0278
symbol: Fnod_0278
gene_biotype: protein_coding
description:
  TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: tpt:Tpet_1421 twitching motility protein.


ensembl_gene_id: Fnod_0279
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: Fnod_0280
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: Fnod_0281
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Fnod_0282
symbol: Fnod_0282
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: tma:TM1639 electron transfer protein, putative.


ensembl_gene_id: Fnod_0283
symbol: Fnod_0283
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tpt:Tpet_1151 glutamate synthase (NADPH), homotetrameric.


ensembl_gene_id: Fnod_0285
symbol: Fnod_0285
gene_biotype: protein_coding
description:
  Alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tpt:Tpet_1550 periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Fnod_0286
symbol: Fnod_0286
gene_biotype: protein_coding
description:
  Glucan endo-1,3-beta-D-glucosidase; PFAM: glycoside hydrolase family 16; KEGG: tpt:Tpet_0899 glycoside hydrolase, family 16.


ensembl_gene_id: Fnod_0287
symbol: Fnod_0287
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 3 domain protein; KEGG: tma:TM0025 beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: Fnod_0288
symbol: Fnod_0288
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2413 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0289
symbol: Fnod_0289
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2414 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0292
symbol: Fnod_0292
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2417 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0293
symbol: Fnod_0293
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0294
symbol: Fnod_0294
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2419 extracellular solute-binding protein, family 1.


ensembl_gene_id: Fnod_0295
symbol: Fnod_0295
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ssv:SSU98_0171 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: Fnod_0296
symbol: Fnod_0296
gene_biotype: protein_coding
description:
  Glucan endo-1,6-beta-glucosidase; PFAM: glycoside hydrolase family 30; KEGG: aba:Acid345_4153 glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.


ensembl_gene_id: Fnod_0299
symbol: mutS2
gene_biotype: protein_coding
description:
  MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: Fnod_0302
symbol: uppP
gene_biotype: protein_coding
description:
  Bacitracin resistance protein BacA; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Fnod_0304
symbol: Fnod_0304
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: Fnod_0305
symbol: Fnod_0305
gene_biotype: protein_coding
description:
  TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: tpt:Tpet_0031 galactose-1-phosphate uridylyltransferase.


ensembl_gene_id: Fnod_0308
symbol: Fnod_0308
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cno:NT01CX_0730 MATE efflux family protein.


ensembl_gene_id: Fnod_0310
symbol: Fnod_0310
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tma:TM1391 ATP-dependent Clp protease, ATPase subunit; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Fnod_0311
symbol: Fnod_0311
gene_biotype: protein_coding
description:
  TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1; KEGG: pfu:PF1751 probable solute binding lipoprotein.


ensembl_gene_id: Fnod_0312
symbol: Fnod_0312
gene_biotype: protein_coding
description:
  SMART: extracellular solute-binding protein family 3; KEGG: bcn:Bcen_4284 twin-arginine translocation pathway signal.


ensembl_gene_id: Fnod_0313
symbol: Fnod_0313
gene_biotype: protein_coding
description:
  TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tma:TM1724 3-oxoacyl-(acyl carrier protein) reductase.


ensembl_gene_id: Fnod_0314
symbol: Fnod_0314
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: cps:CPS_2626 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Fnod_0317
symbol: Fnod_0317
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tpt:Tpet_1370 stage II sporulation E family protein.


ensembl_gene_id: Fnod_0318
symbol: Fnod_0318
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpt:Tpet_1371 4Fe-4S ferredoxin, iron-sulfur binding domain protein.


ensembl_gene_id: Fnod_0320
symbol: Fnod_0320
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal subunit interface protein; KEGG: tpt:Tpet_1185 sigma 54 modulation protein/ribosomal protein S30EA.


ensembl_gene_id: Fnod_0324
symbol: Fnod_0324
gene_biotype: protein_coding
description:
  PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: tpt:Tpet_1182 H+-transporting two-sector ATPase, delta/epsilon subunit.


ensembl_gene_id: Fnod_0325
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Fnod_0326
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: Fnod_0327
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Fnod_0328
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: Fnod_0329
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Fnod_0330
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Fnod_0331
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: Fnod_0334
symbol: Fnod_0334
gene_biotype: protein_coding
description:
  Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: tpt:Tpet_0881 peptidase M24; Belongs to the peptidase M24B family.


ensembl_gene_id: Fnod_0335
symbol: Fnod_0335
gene_biotype: protein_coding
description:
  Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: Fnod_0336
symbol: Fnod_0336
gene_biotype: protein_coding
description:
  TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tma:TM1546 single stranded DNA-specific exonuclease.


ensembl_gene_id: Fnod_0339
symbol: Fnod_0339
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: bfs:BF0904 putative flavoprotein.


ensembl_gene_id: Fnod_0340
symbol: Fnod_0340
gene_biotype: protein_coding
description:
  TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: tma:TM1094 RNA methyltransferase, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: Fnod_0341
symbol: Fnod_0341
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: chy:CHY_0815 putative fosmidomycin resistance protein.


ensembl_gene_id: Fnod_0343
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: Fnod_0344
symbol: Fnod_0344
gene_biotype: protein_coding
description:
  TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tpt:Tpet_0759 FolC bifunctional protein; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: Fnod_0345
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: Fnod_0347
symbol: Fnod_0347
gene_biotype: protein_coding
description:
  TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0515 hypothetical protein.


ensembl_gene_id: Fnod_0350
symbol: nfi
gene_biotype: protein_coding
description:
  Deoxyribonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.


ensembl_gene_id: Fnod_0352
symbol: Fnod_0352
gene_biotype: protein_coding
description:
  Citrate transporter; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: tpt:Tpet_1808 citrate transporter.


ensembl_gene_id: Fnod_0355
symbol: Fnod_0355
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: tpt:Tpet_0909 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Fnod_0360
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: Fnod_0363
symbol: Fnod_0363
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: Fnod_0364
symbol: Fnod_0364
gene_biotype: protein_coding
description:
  PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_0726 ATPase AAA-2 domain protein; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Fnod_0365
symbol: Fnod_0365
gene_biotype: protein_coding
description:
  PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tpt:Tpet_0319 PHP C-terminal domain protein.


ensembl_gene_id: Fnod_0366
symbol: obg
gene_biotype: protein_coding
description:
  GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: Fnod_0367
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: Fnod_0368
symbol: Fnod_0368
gene_biotype: protein_coding
description:
  Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: Fnod_0370
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.


ensembl_gene_id: Fnod_0371
symbol: Fnod_0371
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1377 spermidine/putrescine transport system permease protein.


ensembl_gene_id: Fnod_0372
symbol: Fnod_0372
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_1405 ornithine carbamoyltransferase.


ensembl_gene_id: Fnod_0373
symbol: Fnod_0373
gene_biotype: protein_coding
description:
  Inosine guanosine and xanthosine phosphorylase family; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: Fnod_0375
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: Fnod_0376
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: Fnod_0377
symbol: Fnod_0377
gene_biotype: protein_coding
description:
  PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: tpt:Tpet_0020 GTP-binding signal recognition particle SRP54, G-domain.


ensembl_gene_id: Fnod_0381
symbol: Fnod_0381
gene_biotype: protein_coding
description:
  CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; KEGG: tma:TM0904 chemotaxis protein CheC.


ensembl_gene_id: Fnod_0382
symbol: cheD
gene_biotype: protein_coding
description:
  CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: Fnod_0383
symbol: Fnod_0383
gene_biotype: protein_coding
description:
  TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: tma:TM0902 RNA polymerase sigma-28 factor, putative.


ensembl_gene_id: Fnod_0387
symbol: rnfC
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.


ensembl_gene_id: Fnod_0388
symbol: rnfD
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, D subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.


ensembl_gene_id: Fnod_0389
symbol: rnfG
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, G subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.


ensembl_gene_id: Fnod_0390
symbol: rnfE
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, E subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: Fnod_0391
symbol: rnfA
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, A subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: Fnod_0392
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Fnod_0394
symbol: hslU
gene_biotype: protein_coding
description:
  Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: Fnod_0395
symbol: Fnod_0395
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0321 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0396
symbol: Fnod_0396
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0320 monosaccharide-transporting ATPase.


ensembl_gene_id: Fnod_0398
symbol: Fnod_0398
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: tpt:Tpet_0070 riboflavin biosynthesis protein RibF; Belongs to the ribF family.


ensembl_gene_id: Fnod_0399
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: Fnod_0400
symbol: Fnod_0400
gene_biotype: protein_coding
description:
  Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: Fnod_0402
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Fnod_0403
symbol: Fnod_0403
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM0854 hypothetical protein.


ensembl_gene_id: Fnod_0404
symbol: Fnod_0404
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tma:TM0853 sensor histidine kinase.


ensembl_gene_id: Fnod_0406
symbol: engB
gene_biotype: protein_coding
description:
  GTP-binding protein HSR1-related; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: Fnod_0407
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: Fnod_0409
symbol: Fnod_0409
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.


ensembl_gene_id: Fnod_0412
symbol: Fnod_0412
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tpt:Tpet_0288 HAD-superfamily hydrolase, subfamily IA, variant 3.


ensembl_gene_id: Fnod_0414
symbol: Fnod_0414
gene_biotype: protein_coding
description:
  PFAM: class II aldolase/adducin family protein; KEGG: drm:Dred_2062 class II aldolase/adducin family protein.


ensembl_gene_id: Fnod_0415
symbol: Fnod_0415
gene_biotype: protein_coding
description:
  TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: tpt:Tpet_1562 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: Fnod_0416
symbol: Fnod_0416
gene_biotype: protein_coding
description:
  TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: tma:TM1191 galactose-1-phosphate uridylyltransferase.


ensembl_gene_id: Fnod_0418
symbol: Fnod_0418
gene_biotype: protein_coding
description:
  Alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tpt:Tpet_1556 periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Fnod_0419
symbol: Fnod_0419
gene_biotype: protein_coding
description:
  Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: tpt:Tpet_1557 beta-galactosidase.


ensembl_gene_id: Fnod_0420
symbol: Fnod_0420
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: csc:Csac_0786 major facilitator superfamily MFS_1.


ensembl_gene_id: Fnod_0421
symbol: Fnod_0421
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: Fnod_0425
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: Fnod_0426
symbol: Fnod_0426
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF74; KEGG: tpt:Tpet_0165 protein of unknown function DUF74; Belongs to the UPF0145 family.


ensembl_gene_id: Fnod_0428
symbol: Fnod_0428
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0765 putative ABC-2 type transport system ATP-binding protein.


ensembl_gene_id: Fnod_0431
symbol: Fnod_0431
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Fnod_0432
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: Fnod_0433
symbol: rpsI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S9; KEGG: tma:TM1453 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: Fnod_0434
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: Fnod_0435
symbol: Fnod_0435
gene_biotype: protein_coding
description:
  Membrane protein-like protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.


ensembl_gene_id: Fnod_0436
symbol: rpmA
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L27; KEGG: tpt:Tpet_1338 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: Fnod_0438
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: Fnod_0443
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: Fnod_0444
symbol: Fnod_0444
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.


ensembl_gene_id: Fnod_0445
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.


ensembl_gene_id: Fnod_0446
symbol: Fnod_0446
gene_biotype: protein_coding
description:
  Sucrose-phosphate synthase; PFAM: glycosyl transferase group 1; KEGG: pma:Pro1880 glycosyltransferase.


ensembl_gene_id: Fnod_0448
symbol: Fnod_0448
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0956 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0449
symbol: Fnod_0449
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0955 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0450
symbol: Fnod_0450
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: tpt:Tpet_0954 extracellular solute-binding protein, family 1.


ensembl_gene_id: Fnod_0454
symbol: miaB
gene_biotype: protein_coding
description:
  RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Fnod_0456
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: Fnod_0457
symbol: Fnod_0457
gene_biotype: protein_coding
description:
  TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: tpt:Tpet_0280 Cof-like hydrolase.


ensembl_gene_id: Fnod_0459
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: Fnod_0460
symbol: Fnod_0460
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP).


ensembl_gene_id: Fnod_0462
symbol: Fnod_0462
gene_biotype: protein_coding
description:
  PFAM: Oxidoreductase FAD-binding domain protein; KEGG: tpt:Tpet_0585 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase-like protein.


ensembl_gene_id: Fnod_0466
symbol: Fnod_0466
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bfs:BF3019 putative iron uptake-related regulatory protein; Belongs to the Fur family.


ensembl_gene_id: Fnod_0471
symbol: Fnod_0471
gene_biotype: protein_coding
description:
  Malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: tpt:Tpet_0379 malate dehydrogenase (oxaloacetate-decarboxylating).


ensembl_gene_id: Fnod_0472
symbol: Fnod_0472
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: mfa:Mfla_2469 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with PAS/PAC sensor(s).


ensembl_gene_id: Fnod_0473
symbol: comB
gene_biotype: protein_coding
description:
  PFAM: 2-phosphosulfolactate phosphatase; KEGG: tte:TTE1972 putative 2-phosphosulfolactate phosphatase; Belongs to the ComB family.


ensembl_gene_id: Fnod_0474
symbol: Fnod_0474
gene_biotype: protein_coding
description:
  PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1376 ABC transporter related.


ensembl_gene_id: Fnod_0476
symbol: Fnod_0476
gene_biotype: protein_coding
description:
  PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: rci:RRC475 putative transporter (arsenical pump membrane protein family).


ensembl_gene_id: Fnod_0478
symbol: Fnod_0478
gene_biotype: protein_coding
description:
  Conserved hypothetical integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: Fnod_0483
symbol: Fnod_0483
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tpt:Tpet_0791 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Fnod_0484
symbol: Fnod_0484
gene_biotype: protein_coding
description:
  TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tpt:Tpet_0921 phosphodiesterase, MJ0936 family.


ensembl_gene_id: Fnod_0485
symbol: Fnod_0485
gene_biotype: protein_coding
description:
  TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: tte:TTE0729 predicted epimerase, PhzC/PhzF homolog.


ensembl_gene_id: Fnod_0486
symbol: Fnod_0486
gene_biotype: protein_coding
description:
  Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: tma:TM0769 phosphomannomutase.


ensembl_gene_id: Fnod_0487
symbol: Fnod_0487
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pho:PH1352 thiamine transport system permease protein.


ensembl_gene_id: Fnod_0489
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: Fnod_0490
symbol: Fnod_0490
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: tpt:Tpet_0555 fibronectin-binding A domain protein.


ensembl_gene_id: Fnod_0491
symbol: Fnod_0491
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: tpe:Tpen_1575 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.


ensembl_gene_id: Fnod_0495
symbol: Fnod_0495
gene_biotype: protein_coding
description:
  TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase.


ensembl_gene_id: Fnod_0496
symbol: Fnod_0496
gene_biotype: protein_coding
description:
  Rossmann fold nucleotide-binding protein involved in DNA uptake-like protein; KEGG: maq:Maqu_0560 hypothetical protein.


ensembl_gene_id: Fnod_0497
symbol: Fnod_0497
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: msi:Msm_0695 DNA repair helicase.


ensembl_gene_id: Fnod_0500
symbol: Fnod_0500
gene_biotype: protein_coding
description:
  PFAM: DNA methylase N-4/N-6 domain protein; KEGG: afu:AF1409 modification methylase, type III R/M system.


ensembl_gene_id: Fnod_0501
symbol: Fnod_0501
gene_biotype: protein_coding
description:
  PFAM: type III restriction protein res subunit; KEGG: hpy:HP1371 type III restriction enzyme R protein.


ensembl_gene_id: Fnod_0504
symbol: Fnod_0504
gene_biotype: protein_coding
description:
  Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.


ensembl_gene_id: Fnod_0506
symbol: Fnod_0506
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase beta domain protein region; KEGG: csc:Csac_2676 DNA polymerase, beta domain protein region.


ensembl_gene_id: Fnod_0507
symbol: Fnod_0507
gene_biotype: protein_coding
description:
  PFAM: restriction modification system DNA specificity domain; KEGG: csc:Csac_2677 restriction modification system DNA specificity domain.


ensembl_gene_id: Fnod_0508
symbol: Fnod_0508
gene_biotype: protein_coding
description:
  TIGRFAM: type I restriction-modification system, M subunit; PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: csc:Csac_2680 type I restriction-modification system, M subunit.


ensembl_gene_id: Fnod_0513
symbol: crcB
gene_biotype: protein_coding
description:
  CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Fnod_0519
symbol: Fnod_0519
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; KEGG: tde:TDE0085 ATP-dependent DNA helicase, UvrD/Rep family; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: Fnod_0520
symbol: Fnod_0520
gene_biotype: protein_coding
description:
  PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: tpt:Tpet_0380 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit.


ensembl_gene_id: Fnod_0521
symbol: Fnod_0521
gene_biotype: protein_coding
description:
  TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; KEGG: tma:TM0540 fumarate hydratase alpha subunit.


ensembl_gene_id: Fnod_0522
symbol: Fnod_0522
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: fnu:FN1789 Na+ driven multidrug efflux pump.


ensembl_gene_id: Fnod_0523
symbol: Fnod_0523
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ter:Tery_1795 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Fnod_0525
symbol: Fnod_0525
gene_biotype: protein_coding
description:
  PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mja:MJ1209m DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: Fnod_0527
symbol: Fnod_0527
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold; inner-membrane translocator; KEGG: rpa:RPA4044 putative branched-chain amino acid transport system permease protein.


ensembl_gene_id: Fnod_0528
symbol: Fnod_0528
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: sth:STH802 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Fnod_0530
symbol: Fnod_0530
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG.


ensembl_gene_id: Fnod_0531
symbol: Fnod_0531
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: sth:STH803 putative branched chain amino acid ABC transporter substrate-binding protein.


ensembl_gene_id: Fnod_0534
symbol: Fnod_0534
gene_biotype: protein_coding
description:
  PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: mxa:MXAN_0215 putative 3-oxoacyl-(acyl-carrier-protein) synthase.


ensembl_gene_id: Fnod_0539
symbol: Fnod_0539
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_0448 ABC transporter, ATP-binding protein.


ensembl_gene_id: Fnod_0541
symbol: Fnod_0541
gene_biotype: protein_coding
description:
  PFAM: regulatory protein GntR HTH; Helix-turn-helix type 11 domain protein; KEGG: csc:Csac_2165 regulatory protein GntR, HTH.


ensembl_gene_id: Fnod_0544
symbol: Fnod_0544
gene_biotype: protein_coding
description:
  PFAM: amine oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bha:BH1848 hypothetical protein.


ensembl_gene_id: Fnod_0545
symbol: Fnod_0545
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rrs:RoseRS_0015 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Fnod_0548
symbol: plsY
gene_biotype: protein_coding
description:
  Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: Fnod_0551
symbol: Fnod_0551
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: ade:Adeh_0133 major facilitator superfamily MFS_1 transporter.


ensembl_gene_id: Fnod_0553
symbol: Fnod_0553
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cya:CYA_2401 peptidase, S8A (subtilisin) family; Belongs to the peptidase S8 family.


ensembl_gene_id: Fnod_0563
symbol: Fnod_0563
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: chu:CHU_0929 A-glycosyltransferase-related protein, glycosyltransferase family 4 protein.


ensembl_gene_id: Fnod_0565
symbol: Fnod_0565
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: stm:STM3719 UDP-D-galactose:(glucosyl)lipopolysaccharide alpha-1,6-D-galactosyltransferase.


ensembl_gene_id: Fnod_0568
symbol: Fnod_0568
gene_biotype: protein_coding
description:
  PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tpt:Tpet_0308 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: Fnod_0573
symbol: Fnod_0573
gene_biotype: protein_coding
description:
  PFAM: polysaccharide biosynthesis protein; KEGG: ste:STER_1057 polysaccharide transporter, PST family.


ensembl_gene_id: Fnod_0582
symbol: Fnod_0582
gene_biotype: protein_coding
description:
  PFAM: polysaccharide biosynthesis protein; KEGG: tma:TM0620 lipopolysaccharide biosynthesis protein.


ensembl_gene_id: Fnod_0583
symbol: Fnod_0583
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: ctc:CTC00712 electron transfer flavoprotein alpha-subunit fixB.


ensembl_gene_id: Fnod_0584
symbol: Fnod_0584
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: cbo:CBO3198 electron transfer flavoprotein beta-subunit.


ensembl_gene_id: Fnod_0585
symbol: Fnod_0585
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: tte:TTE0545 Acyl-CoA dehydrogenases.


ensembl_gene_id: Fnod_0586
symbol: Fnod_0586
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tma:TM1835 cyclomaltodextrinase, putative.


ensembl_gene_id: Fnod_0587
symbol: Fnod_0587
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: efa:EF1586 NADH oxidase.


ensembl_gene_id: Fnod_0588
symbol: Fnod_0588
gene_biotype: protein_coding
description:
  Carboxypeptidase Taq; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.


ensembl_gene_id: Fnod_0589
symbol: Fnod_0589
gene_biotype: protein_coding
description:
  TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tpt:Tpet_0409 Mg chelatase, subunit ChlI.


ensembl_gene_id: Fnod_0590
symbol: Fnod_0590
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: cdf:CD1984 NUDIX-family protein; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Fnod_0596
symbol: Fnod_0596
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: tma:TM0143 response regulator.


ensembl_gene_id: Fnod_0599
symbol: Fnod_0599
gene_biotype: protein_coding
description:
  Peptidase M42 family protein; PFAM: peptidase M18 aminopeptidase I; peptidase M20; peptidase M42 family protein; KEGG: pab:PAB2375 aminopeptidase from family M42.


ensembl_gene_id: Fnod_0602
symbol: pth
gene_biotype: protein_coding
description:
  Aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: Fnod_0603
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: Fnod_0604
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Fnod_0605
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: Fnod_0607
symbol: Fnod_0607
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: tma:TM0272 pyruvate,orthophosphate dikinase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Fnod_0609
symbol: Fnod_0609
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tpt:Tpet_1020 3-oxoacyl-(acyl-carrier-protein) reductase.


ensembl_gene_id: Fnod_0611
symbol: Fnod_0611
gene_biotype: protein_coding
description:
  TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: tpt:Tpet_0130 malonyl CoA-acyl carrier protein transacylase.


ensembl_gene_id: Fnod_0613
symbol: Fnod_0613
gene_biotype: protein_coding
description:
  PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: tpt:Tpet_0127 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ.


ensembl_gene_id: Fnod_0614
symbol: Fnod_0614
gene_biotype: protein_coding
description:
  Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: Fnod_0617
symbol: Fnod_0617
gene_biotype: protein_coding
description:
  PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: tpt:Tpet_1170 glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: Fnod_0621
symbol: Fnod_0621
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: tpt:Tpet_0154 ribosomal protein L7Ae/L30e/S12e/Gadd45.


ensembl_gene_id: Fnod_0623
symbol: Fnod_0623
gene_biotype: protein_coding
description:
  TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: oih:OB2265 hemolysin III.


ensembl_gene_id: Fnod_0626
symbol: Fnod_0626
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: pin:Ping_2008 ABC transporter extracellular solute-binding protein, family 1.


ensembl_gene_id: Fnod_0627
symbol: Fnod_0627
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2863 sugar ABC transporter, permease protein, putative.


ensembl_gene_id: Fnod_0628
symbol: Fnod_0628
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpl:BURPS1106A_A2816 putative carbohydrate ABC transporter, permease protein.


ensembl_gene_id: Fnod_0629
symbol: Fnod_0629
gene_biotype: protein_coding
description:
  PFAM: NQR2 and RnfD family protein; KEGG: neu:NE2396 Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq2.


ensembl_gene_id: Fnod_0630
symbol: Fnod_0630
gene_biotype: protein_coding
description:
  PFAM: FMN-binding domain protein; KEGG: bfs:BF2067 putative Na+-translocating NADH-quinone reductase subunit C.


ensembl_gene_id: Fnod_0631
symbol: Fnod_0631
gene_biotype: protein_coding
description:
  TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit; KEGG: pin:Ping_0749 NADH:ubiquinone oxidoreductase, subunit D; Belongs to the NqrDE/RnfAE family.


ensembl_gene_id: Fnod_0632
symbol: rnfA-2
gene_biotype: protein_coding
description:
  RnfA-Nqr electron transport subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: Fnod_0633
symbol: Fnod_0633
gene_biotype: protein_coding
description:
  TIGRFAM: NADH:ubiquinone oxidoreductase, subunit F; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ngo:NGO1418 NqrF.


ensembl_gene_id: Fnod_0635
symbol: Fnod_0635
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; KEGG: tma:TM1162 conserved hypothetical protein; Belongs to the UPF0173 family.


ensembl_gene_id: Fnod_0636
symbol: Fnod_0636
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mmq:MmarC5_1182 DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family.


ensembl_gene_id: Fnod_0638
symbol: Fnod_0638
gene_biotype: protein_coding
description:
  PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; KEGG: tpt:Tpet_1190 3H domain protein.


ensembl_gene_id: Fnod_0639
symbol: Fnod_0639
gene_biotype: protein_coding
description:
  PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: tma:TM1878 UDP-sugar hydrolase; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: Fnod_0642
symbol: Fnod_0642
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: tma:TM1405 lipopolysaccharide biosynthesis protein-related protein.


ensembl_gene_id: Fnod_0645
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: Fnod_0646
symbol: rpsP
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S16; KEGG: tpt:Tpet_1226 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Fnod_0647
symbol: Fnod_0647
gene_biotype: protein_coding
description:
  KEGG: tpt:Tpet_1225 RNA-binding protein (contains KH domain)-like protein; Belongs to the UPF0109 family.


ensembl_gene_id: Fnod_0648
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Fnod_0649
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Fnod_0651
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Fnod_0652
symbol: Fnod_0652
gene_biotype: protein_coding
description:
  TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: tpt:Tpet_1220 signal peptidase I; Belongs to the peptidase S26 family.


ensembl_gene_id: Fnod_0657
symbol: Fnod_0657
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; ATP-binding region ATPase domain protein; KEGG: tpt:Tpet_1429 putative anti-sigma regulatory factor, serine/threonine protein kinase.


ensembl_gene_id: Fnod_0659
symbol: Fnod_0659
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM0037 hypothetical protein.


ensembl_gene_id: Fnod_0660
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: Fnod_0661
symbol: rpmI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L35; KEGG: tpt:Tpet_1202 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: Fnod_0662
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: Fnod_0663
symbol: Fnod_0663
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tma:TM0876 hypothetical protein.


ensembl_gene_id: Fnod_0665
symbol: Fnod_0665
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tpt:Tpet_0346 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Fnod_0666
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: Fnod_0667
symbol: Fnod_0667
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: Fnod_0668
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: Fnod_0669
symbol: Fnod_0669
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0705 ABC transporter, ATP-binding protein.


ensembl_gene_id: Fnod_0671
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: Fnod_0673
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: Fnod_0674
symbol: Fnod_0674
gene_biotype: protein_coding
description:
  TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: tma:TM0604 single stranded DNA-binding protein, putative.


ensembl_gene_id: Fnod_0676
symbol: Fnod_0676
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: lca:LSEI_0429 permease of the major facilitator superfamily.


ensembl_gene_id: Fnod_0678
symbol: gltX1
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: Fnod_0679
symbol: cysS
gene_biotype: protein_coding
description:
  TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: tma:TM0719 cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Fnod_0680
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: Fnod_0681
symbol: rtcB
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0027; KEGG: tma:TM1357 hypothetical protein; Belongs to the RtcB family.


ensembl_gene_id: Fnod_0684
symbol: Fnod_0684
gene_biotype: protein_coding
description:
  PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: tpt:Tpet_0924 Orn/DAP/Arg decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: Fnod_0685
symbol: Fnod_0685
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_1298 diguanylate cyclase (GGDEF domain).


ensembl_gene_id: Fnod_0686
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Fnod_0688
symbol: Fnod_0688
gene_biotype: protein_coding
description:
  TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: tpt:Tpet_1216 hemolysin A.


ensembl_gene_id: Fnod_0690
symbol: Fnod_0690
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: tma:TM0702 chemotaxis sensor histidine kinase CheA.


ensembl_gene_id: Fnod_0694
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: Fnod_0695
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: Fnod_0696
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: Fnod_0697
symbol: Fnod_0697
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tpt:Tpet_1362 FAD dependent oxidoreductase.


ensembl_gene_id: Fnod_0698
symbol: Fnod_0698
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tpt:Tpet_1361 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Fnod_0700
symbol: mrnC
gene_biotype: protein_coding
description:
  Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.


ensembl_gene_id: Fnod_0704
symbol: Fnod_0704
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: Fnod_0707
symbol: Fnod_0707
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: tpt:Tpet_1143 metal dependent phosphohydrolase.


ensembl_gene_id: Fnod_0709
symbol: hslV
gene_biotype: protein_coding
description:
  20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: Fnod_0710
symbol: Fnod_0710
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: Fnod_0711
symbol: Fnod_0711
gene_biotype: protein_coding
description:
  SMART: phospholipase D/Transphosphatidylase; KEGG: tpt:Tpet_0279 phospholipase D/transphosphatidylase.


ensembl_gene_id: Fnod_0713
symbol: Fnod_0713
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0389 putative ABC-2 type transport system ATP-binding protein.


ensembl_gene_id: Fnod_0714
symbol: Fnod_0714
gene_biotype: protein_coding
description:
  PFAM: ABC-2 type transporter; KEGG: tma:TM0387 putative ABC-2 type transport system permease protein.


ensembl_gene_id: Fnod_0715
symbol: Fnod_0715
gene_biotype: protein_coding
description:
  PFAM: S-layer domain protein; RepA / Rep KID repeat-containing protein; KEGG: ddi:DDBDRAFT_0188916 hypothetical protein.


ensembl_gene_id: Fnod_0716
symbol: Fnod_0716
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tpt:Tpet_1191 radical SAM domain protein.


ensembl_gene_id: Fnod_0719
symbol: Fnod_0719
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: tpt:Tpet_1194 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Fnod_0722
symbol: Fnod_0722
gene_biotype: protein_coding
description:
  PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: chy:CHY_2227 PHP domain protein.


ensembl_gene_id: Fnod_0723
symbol: Fnod_0723
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1558 hypothetical protein.


ensembl_gene_id: Fnod_0725
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: Fnod_0726
symbol: Fnod_0726
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: tpt:Tpet_0190 metal dependent phosphohydrolase.


ensembl_gene_id: Fnod_0732
symbol: apgM
gene_biotype: protein_coding
description:
  Phosphonopyruvate decarboxylase-related protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: Fnod_0734
symbol: Fnod_0734
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: tma:TM1776 ferric uptake regulation protein; Belongs to the Fur family.


ensembl_gene_id: Fnod_0736
symbol: rimP
gene_biotype: protein_coding
description:
  Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: Fnod_0738
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: Fnod_0739
symbol: pgk
gene_biotype: protein_coding
description:
  PFAM: phosphoglycerate kinase; KEGG: tma:TM0689 phosphoglycerate kinase / triose-phosphate isomerase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: Fnod_0740
symbol: Fnod_0740
gene_biotype: protein_coding
description:
  TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: tma:TM0688 glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: Fnod_0741
symbol: Fnod_0741
gene_biotype: protein_coding
description:
  TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: bth:BT_3019 putative Na+/Ca2+ exchanger protein, cation antiporter.


ensembl_gene_id: Fnod_0742
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: Fnod_0743
symbol: Fnod_0743
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: tma:TM1701 hypothetical protein.


ensembl_gene_id: Fnod_0744
symbol: trmFO
gene_biotype: protein_coding
description:
  Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: Fnod_0746
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: Fnod_0747
symbol: Fnod_0747
gene_biotype: protein_coding
description:
  PFAM: Silent information regulator protein Sir2; KEGG: tpt:Tpet_0430 silent information regulator protein Sir2.


ensembl_gene_id: Fnod_0754
symbol: Fnod_0754
gene_biotype: protein_coding
description:
  PFAM: Alkaline phosphatase; KEGG: tpt:Tpet_0770 alkaline phosphatase; Belongs to the alkaline phosphatase family.


ensembl_gene_id: Fnod_0757
symbol: Fnod_0757
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pth:PTH_0006 hypothetical membrane protein.


ensembl_gene_id: Fnod_0758
symbol: Fnod_0758
gene_biotype: protein_coding
description:
  Flagellar protein export ATPase FliI; KEGG: tma:TM0218 flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase.


ensembl_gene_id: Fnod_0760
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: Fnod_0761
symbol: Fnod_0761
gene_biotype: protein_coding
description:
  TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; KEGG: tpt:Tpet_0651 fructose-1,6-bisphosphate aldolase, class II.


ensembl_gene_id: Fnod_0762
symbol: Fnod_0762
gene_biotype: protein_coding
description:
  Chloride channel core; PFAM: TrkA-C domain protein; Chloride channel core; KEGG: cno:NT01CX_0195 voltage gated chloride channel family protein.


ensembl_gene_id: Fnod_0763
symbol: thiI
gene_biotype: protein_coding
description:
  Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.


ensembl_gene_id: Fnod_0765
symbol: Fnod_0765
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_0251 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Fnod_0767
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: Fnod_0770
symbol: Fnod_0770
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cac:CAC2540 Co/Zn/Cd efflux system component.


ensembl_gene_id: Fnod_0772
symbol: Fnod_0772
gene_biotype: protein_coding
description:
  PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: tma:TM0268 5-methyltetrahydrofolate S-homocysteine methyltransferase.


ensembl_gene_id: Fnod_0779
symbol: Fnod_0779
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1836 maltose transport system permease protein.


ensembl_gene_id: Fnod_0780
symbol: Fnod_0780
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0967 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_0781
symbol: Fnod_0781
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: tpt:Tpet_0966 extracellular solute-binding protein, family 1.


ensembl_gene_id: Fnod_0784
symbol: Fnod_0784
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE1017 sensory transduction histidine kinase.


ensembl_gene_id: Fnod_0785
symbol: Fnod_0785
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bha:BH0372 two-component response regulator.


ensembl_gene_id: Fnod_0787
symbol: Fnod_0787
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM1103 hypothetical protein.


ensembl_gene_id: Fnod_0790
symbol: Fnod_0790
gene_biotype: protein_coding
description:
  TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: tpt:Tpet_1664 ribose 5-phosphate isomerase B.


ensembl_gene_id: Fnod_0791
symbol: Fnod_0791
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tma:TM1081 anti-sigma factor antagonist, putative; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Fnod_0792
symbol: Fnod_0792
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: gur:Gura_2044 anti-sigma-factor antagonist.


ensembl_gene_id: Fnod_0793
symbol: lexA
gene_biotype: protein_coding
description:
  SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: Fnod_0795
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Fnod_0796
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: Fnod_0800
symbol: Fnod_0800
gene_biotype: protein_coding
description:
  TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: tma:TM0667 putative deoxyribonuclease.


ensembl_gene_id: Fnod_0801
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: Fnod_0805
symbol: Fnod_0805
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: tma:TM1665 hypothetical protein.


ensembl_gene_id: Fnod_0806
symbol: Fnod_0806
gene_biotype: protein_coding
description:
  PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: tpt:Tpet_0472 surface antigen (D15).


ensembl_gene_id: Fnod_0807
symbol: ogg
gene_biotype: protein_coding
description:
  DNA-(apurinic or apyrimidinic site) lyase; Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites (AP sites); Belongs to the type-2 OGG1 family.


ensembl_gene_id: Fnod_0808
symbol: Fnod_0808
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase domain protein; KEGG: tma:TM0843 formiminotransferase- cyclodeaminase/formiminotetrahydrofolate cyclodeaminase, putative.


ensembl_gene_id: Fnod_0811
symbol: Fnod_0811
gene_biotype: protein_coding
description:
  Alpha-mannosidase; PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: tma:TM1851 alpha-mannosidase.


ensembl_gene_id: Fnod_0813
symbol: Fnod_0813
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tma:TM1132 moxR protein, putative.


ensembl_gene_id: Fnod_0815
symbol: Fnod_0815
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF123; SMART: Excinuclease ABC C subunit domain protein; KEGG: pho:PH0629 hypothetical protein.


ensembl_gene_id: Fnod_0818
symbol: Fnod_0818
gene_biotype: protein_coding
description:
  PFAM: WD-40 repeat protein; KEGG: tet:TTHERM_00400790 hypothetical protein Pfam: WD40 Pox_int_trans YTH.


ensembl_gene_id: Fnod_0819
symbol: Fnod_0819
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: tte:TTE1310 NTP pyrophosphohydrolases including oxidative damage repair enzymes.


ensembl_gene_id: Fnod_0824
symbol: Fnod_0824
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Fnod_0825
symbol: Fnod_0825
gene_biotype: protein_coding
description:
  Adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1; KEGG: tma:TM1129 5-methylthioadenosine / S-adenosylhomocysteine nucleosidase.


ensembl_gene_id: Fnod_0827
symbol: Fnod_0827
gene_biotype: protein_coding
description:
  GTP-binding protein HSR1-related; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.


ensembl_gene_id: Fnod_0831
symbol: Fnod_0831
gene_biotype: protein_coding
description:
  PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: tpt:Tpet_0425 PhoH family protein.


ensembl_gene_id: Fnod_0832
symbol: Fnod_0832
gene_biotype: protein_coding
description:
  TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tpt:Tpet_0424 DNA polymerase III, epsilon subunit.


ensembl_gene_id: Fnod_0834
symbol: Fnod_0834
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: Fnod_0836
symbol: rpmF
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: tpt:Tpet_0775 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: Fnod_0837
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: Fnod_0838
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: Fnod_0839
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: Fnod_0840
symbol: tsaD
gene_biotype: protein_coding
description:
  Putative metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: Fnod_0843
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: Fnod_0844
symbol: Fnod_0844
gene_biotype: protein_coding
description:
  Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: Fnod_0846
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: Fnod_0847
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: Fnod_0848
symbol: nusG
gene_biotype: protein_coding
description:
  NusG antitermination factor; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: Fnod_0849
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: Fnod_0850
symbol: rpmG
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L33; KEGG: tpt:Tpet_0469 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Fnod_0852
symbol: Fnod_0852
gene_biotype: protein_coding
description:
  PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: tma:TM1141 cytochrome C-type biogenesis protein, putative.


ensembl_gene_id: Fnod_0854
symbol: Fnod_0854
gene_biotype: protein_coding
description:
  TIGRFAM: glutaredoxin-like protein, YruB-family; PFAM: glutaredoxin; KEGG: tpt:Tpet_1719 glutaredoxin-like protein, YruB-family.


ensembl_gene_id: Fnod_0855
symbol: Fnod_0855
gene_biotype: protein_coding
description:
  TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: tma:TM0869 thioredoxin reductase.


ensembl_gene_id: Fnod_0858
symbol: Fnod_0858
gene_biotype: protein_coding
description:
  ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: tpt:Tpet_0799 ABC-3 protein.


ensembl_gene_id: Fnod_0859
symbol: Fnod_0859
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0124 zinc transport system ATP-binding protein.


ensembl_gene_id: Fnod_0860
symbol: Fnod_0860
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: tma:TM0123 zinc transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: Fnod_0862
symbol: Fnod_0862
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0825 AstB/ChuR-related protein.


ensembl_gene_id: Fnod_0863
symbol: Fnod_0863
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tpt:Tpet_0905 thiamine pyrophosphate enzyme domain protein TPP-binding.


ensembl_gene_id: Fnod_0864
symbol: Fnod_0864
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tpt:Tpet_0906 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.


ensembl_gene_id: Fnod_0865
symbol: Fnod_0865
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpt:Tpet_0907 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit.


ensembl_gene_id: Fnod_0866
symbol: Fnod_0866
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tpt:Tpet_0908 pyruvate/ketoisovalerate oxidoreductase, gamma subunit.


ensembl_gene_id: Fnod_0867
symbol: Fnod_0867
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1957; KEGG: tpt:Tpet_1356 domain of unknown function DUF1957; Belongs to the glycosyl hydrolase 57 family.


ensembl_gene_id: Fnod_0869
symbol: Fnod_0869
gene_biotype: protein_coding
description:
  PFAM: PfkB domain protein; KEGG: ctc:CTC00909 ribokinase; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Fnod_0873
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: Fnod_0874
symbol: pgi
gene_biotype: protein_coding
description:
  PFAM: phosphoglucose isomerase (PGI); KEGG: tma:TM1385 glucose-6-phosphate isomerase; Belongs to the GPI family.


ensembl_gene_id: Fnod_0876
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: Fnod_0878
symbol: nadE-2
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: Fnod_0879
symbol: Fnod_0879
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: tma:TM1359 sensor histidine kinase.


ensembl_gene_id: Fnod_0880
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: Fnod_0884
symbol: Fnod_0884
gene_biotype: protein_coding
description:
  PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: gme:Gmet_1295 peptidase M3B, oligoendopeptidase-related clade 3.


ensembl_gene_id: Fnod_0885
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Fnod_0887
symbol: Fnod_0887
gene_biotype: protein_coding
description:
  TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; KEGG: tpt:Tpet_0428 tryptophanyl-tRNA synthetase.


ensembl_gene_id: Fnod_0890
symbol: Fnod_0890
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: tpt:Tpet_0327 peptidoglycan glycosyltransferase.


ensembl_gene_id: Fnod_0891
symbol: Fnod_0891
gene_biotype: protein_coding
description:
  Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: tma:TM0715 tRNA nucleotidyltransferase (CCA-adding enzyme); Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: Fnod_0897
symbol: Fnod_0897
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate.


ensembl_gene_id: Fnod_0899
symbol: pyrR
gene_biotype: protein_coding
description:
  Phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.


ensembl_gene_id: Fnod_0901
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: Fnod_0906
symbol: Fnod_0906
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pho:PH0575 hypothetical protein.


ensembl_gene_id: Fnod_0907
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: Fnod_0909
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Fnod_0913
symbol: Fnod_0913
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: GGDEF domain containing protein; KEGG: tma:TM0143 response regulator.


ensembl_gene_id: Fnod_0915
symbol: Fnod_0915
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: ade:Adeh_0613 CheA signal transduction histidine kinase.


ensembl_gene_id: Fnod_0917
symbol: Fnod_0917
gene_biotype: protein_coding
description:
  PFAM: MCP methyltransferase CheR-type; KEGG: cjj:CJJ81176_0930 chemotaxis protein methyltransferase CheR.


ensembl_gene_id: Fnod_0920
symbol: Fnod_0920
gene_biotype: protein_coding
description:
  TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: tpt:Tpet_1248 cell shape determining protein, MreB/Mrl family.


ensembl_gene_id: Fnod_0921
symbol: Fnod_0921
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tpt:Tpet_1249 protein of unknown function DUF1078 domain protein.


ensembl_gene_id: Fnod_0922
symbol: Fnod_0922
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tpt:Tpet_1250 flagellar basal-body rod protein FlgG.


ensembl_gene_id: Fnod_0926
symbol: Fnod_0926
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tma:TM1449 hypothetical protein.


ensembl_gene_id: Fnod_0928
symbol: Fnod_0928
gene_biotype: protein_coding
description:
  TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: tma:TM1693 1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.


ensembl_gene_id: Fnod_0932
symbol: pheT
gene_biotype: protein_coding
description:
  TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: tpt:Tpet_0105 phenylalanyl-tRNA synthetase, beta subunit.


ensembl_gene_id: Fnod_0934
symbol: Fnod_0934
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tma:TM0930 hypothetical protein.


ensembl_gene_id: Fnod_0936
symbol: Fnod_0936
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).


ensembl_gene_id: Fnod_0937
symbol: Fnod_0937
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein, TM1802 family; CRISPR-associated protein, Csh1 family; KEGG: csc:Csac_0056 CRISPR-associated protein, Csh1 family.


ensembl_gene_id: Fnod_0938
symbol: Fnod_0938
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csh2 family; PFAM: CRISPR-associated protein TM1801; KEGG: csc:Csac_0057 CRISPR-associated protein, Csh2 family.


ensembl_gene_id: Fnod_0939
symbol: Fnod_0939
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated protein Cas5; KEGG: csc:Csac_0058 CRISPR-associated protein Cas5.


ensembl_gene_id: Fnod_0940
symbol: Fnod_0940
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: csc:Csac_0063 CRISPR-associated helicase Cas3.


ensembl_gene_id: Fnod_0941
symbol: Fnod_0941
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: Fnod_0942
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Fnod_0943
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Fnod_0945
symbol: Fnod_0945
gene_biotype: protein_coding
description:
  PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD0170 putative ABC transporter, ATP-binding protein.


ensembl_gene_id: Fnod_0947
symbol: nfo
gene_biotype: protein_coding
description:
  Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.


ensembl_gene_id: Fnod_0948
symbol: Fnod_0948
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: tpt:Tpet_0739 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Fnod_0949
symbol: Fnod_0949
gene_biotype: protein_coding
description:
  TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: tpt:Tpet_0039 thiamine pyrophosphokinase.


ensembl_gene_id: Fnod_0950
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: Fnod_0951
symbol: Fnod_0951
gene_biotype: protein_coding
description:
  TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: tma:TM0890 hypothetical zinc metalloprotease.


ensembl_gene_id: Fnod_0952
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Fnod_0953
symbol: surE
gene_biotype: protein_coding
description:
  Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: Fnod_0954
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: Fnod_0958
symbol: Fnod_0958
gene_biotype: protein_coding
description:
  PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cbo:CBO3619 phosphoglucomutase/phosphomannomutase.


ensembl_gene_id: Fnod_0960
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: Fnod_0961
symbol: Fnod_0961
gene_biotype: protein_coding
description:
  PFAM: type III secretion system inner membrane R protein; KEGG: tpt:Tpet_0017 flagellar biosynthetic protein FliR.


ensembl_gene_id: Fnod_0962
symbol: Fnod_0962
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0243 hypothetical protein.


ensembl_gene_id: Fnod_0963
symbol: Fnod_0963
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0043 ABC transporter, ATP-binding protein.


ensembl_gene_id: Fnod_0964
symbol: Fnod_0964
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tpt:Tpet_0402 putative GAF sensor protein.


ensembl_gene_id: Fnod_0965
symbol: Fnod_0965
gene_biotype: protein_coding
description:
  PFAM: RNA-binding S4 domain protein; KEGG: lga:LGAS_0272 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).


ensembl_gene_id: Fnod_0966
symbol: Fnod_0966
gene_biotype: protein_coding
description:
  KEGG: tma:TM0833 DNA gyrase, subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II.


ensembl_gene_id: Fnod_0969
symbol: Fnod_0969
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme; KEGG: tma:TM0830 conserved hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Fnod_0974
symbol: gcvPB
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily.


ensembl_gene_id: Fnod_0975
symbol: gcvPA
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.


ensembl_gene_id: Fnod_0976
symbol: gcvT
gene_biotype: protein_coding
description:
  Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.


ensembl_gene_id: Fnod_0977
symbol: Fnod_0977
gene_biotype: protein_coding
description:
  PFAM: Quinolinate phosphoribosyl transferase; KEGG: tpt:Tpet_0446 nicotinic acid phosphoribosyltransferase-like protein; Belongs to the NAPRTase family.


ensembl_gene_id: Fnod_0978
symbol: Fnod_0978
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tpt:Tpet_0158 radical SAM domain protein.


ensembl_gene_id: Fnod_0981
symbol: Fnod_0981
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: Fnod_0982
symbol: Fnod_0982
gene_biotype: protein_coding
description:
  ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: Fnod_0985
symbol: Fnod_0985
gene_biotype: protein_coding
description:
  PFAM: ribulose-phosphate 3-epimerase; KEGG: tpt:Tpet_1014 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: Fnod_0987
symbol: Fnod_0987
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1508 hypothetical protein.


ensembl_gene_id: Fnod_0988
symbol: ybeY
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: Fnod_0991
symbol: Fnod_0991
gene_biotype: protein_coding
description:
  PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tpt:Tpet_0696 NADH dehydrogenase (quinone).


ensembl_gene_id: Fnod_0992
symbol: Fnod_0992
gene_biotype: protein_coding
description:
  TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tpt:Tpet_0697 NADH-quinone oxidoreductase, E subunit.


ensembl_gene_id: Fnod_0993
symbol: Fnod_0993
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tpt:Tpet_0913 NADH dehydrogenase (quinone).


ensembl_gene_id: Fnod_0995
symbol: Fnod_0995
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tma:TM0012 NADH dehydrogenase I chain E.


ensembl_gene_id: Fnod_0996
symbol: Fnod_0996
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: csc:Csac_0785 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: Fnod_0998
symbol: Fnod_0998
gene_biotype: protein_coding
description:
  Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.


ensembl_gene_id: Fnod_0999
symbol: Fnod_0999
gene_biotype: protein_coding
description:
  Response regulator receiver protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: bce:BC1006 sigma factor SigB regulation protein RsbU.


ensembl_gene_id: Fnod_1001
symbol: Fnod_1001
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Fnod_1002
symbol: Fnod_1002
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: tma:TM0845 hemolysin-related protein.


ensembl_gene_id: Fnod_1003
symbol: Fnod_1003
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: tma:TM1184 PleD-related protein.


ensembl_gene_id: Fnod_1005
symbol: Fnod_1005
gene_biotype: protein_coding
description:
  PFAM: cell cycle protein; KEGG: tma:TM0839 rod shape-determining protein RodA; Belongs to the SEDS family.


ensembl_gene_id: Fnod_1006
symbol: Fnod_1006
gene_biotype: protein_coding
description:
  PP-loop domain protein; PFAM: phosphoadenosine phosphosulfate reductase; PP-loop domain protein; KEGG: tpt:Tpet_0727 PP-loop domain protein; Belongs to the TtcA family.


ensembl_gene_id: Fnod_1007
symbol: Fnod_1007
gene_biotype: protein_coding
description:
  TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: tma:TM0571 heat shock serine protease, periplasmic.


ensembl_gene_id: Fnod_1008
symbol: Fnod_1008
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tpt:Tpet_0991 tetratricopeptide TPR_2 repeat protein.


ensembl_gene_id: Fnod_1009
symbol: Fnod_1009
gene_biotype: protein_coding
description:
  PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: tpt:Tpet_0992 peptidase A24A domain protein.


ensembl_gene_id: Fnod_1011
symbol: nnrE
gene_biotype: protein_coding
description:
  Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]


ensembl_gene_id: Fnod_1013
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: Fnod_1014
symbol: gpsA
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: tpt:Tpet_0529 glycerol-3-phosphate dehydrogenase (NAD(P)(+)).


ensembl_gene_id: Fnod_1015
symbol: Fnod_1015
gene_biotype: protein_coding
description:
  TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: tma:TM0913 mazG protein.


ensembl_gene_id: Fnod_1016
symbol: Fnod_1016
gene_biotype: protein_coding
description:
  TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: tma:TM1741 putative tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Fnod_1019
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Fnod_1020
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: Fnod_1024
symbol: rpmB
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L28; KEGG: tpt:Tpet_0669 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Fnod_1025
symbol: Fnod_1025
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Fnod_1026
symbol: Fnod_1026
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tpt:Tpet_0667 metal dependent phosphohydrolase.


ensembl_gene_id: Fnod_1027
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: Fnod_1030
symbol: pheS
gene_biotype: protein_coding
description:
  TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: tpt:Tpet_0106 phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: Fnod_1031
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: Fnod_1032
symbol: Fnod_1032
gene_biotype: protein_coding
description:
  PFAM: TGS domain protein; Protein of unknown function DUF933; KEGG: pth:PTH_0927 predicted GTPase, probable translation factor.


ensembl_gene_id: Fnod_1034
symbol: Fnod_1034
gene_biotype: protein_coding
description:
  PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0182 hypothetical protein.


ensembl_gene_id: Fnod_1036
symbol: Fnod_1036
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: tpt:Tpet_1335 cupin 2, conserved barrel domain protein.


ensembl_gene_id: Fnod_1037
symbol: Fnod_1037
gene_biotype: protein_coding
description:
  PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: tpt:Tpet_1334 single-stranded nucleic acid binding R3H domain protein.


ensembl_gene_id: Fnod_1038
symbol: yidC
gene_biotype: protein_coding
description:
  60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: Fnod_1039
symbol: Fnod_1039
gene_biotype: protein_coding
description:
  Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: Fnod_1040
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: Fnod_1041
symbol: rpmH
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L34; KEGG: tpt:Tpet_1330 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: Fnod_1044
symbol: Fnod_1044
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF125 transmembrane; KEGG: tet:TTHERM_00927170 Integral membrane protein Pfam: DUF125 DUF1700.


ensembl_gene_id: Fnod_1046
symbol: Fnod_1046
gene_biotype: protein_coding
description:
  TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; KEGG: ctc:CTC01945 succinyl-diaminopimelate desuccinylase.


ensembl_gene_id: Fnod_1053
symbol: glyQ
gene_biotype: protein_coding
description:
  TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit; KEGG: tma:TM0216 glycyl-tRNA synthetase alpha chain.


ensembl_gene_id: Fnod_1056
symbol: Fnod_1056
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: tpt:Tpet_0324 extracellular solute-binding protein, family 3.


ensembl_gene_id: Fnod_1057
symbol: Fnod_1057
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0325 polar amino acid ABC transporter, inner membrane subunit.


ensembl_gene_id: Fnod_1062
symbol: Fnod_1062
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ttj:TTHA0286 serine protease, subtilase family; Belongs to the peptidase S8 family.


ensembl_gene_id: Fnod_1064
symbol: Fnod_1064
gene_biotype: protein_coding
description:
  PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: tma:TM1015 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: Fnod_1065
symbol: Fnod_1065
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; Acetyl xylan esterase; KEGG: tte:TTE2342 dipeptidyl aminopeptidase/acylaminoacyl-peptidase.


ensembl_gene_id: Fnod_1066
symbol: Fnod_1066
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1515 ABC transporter related.


ensembl_gene_id: Fnod_1067
symbol: Fnod_1067
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tma:TM0972 conserved hypothetical protein, GGDEF domain.


ensembl_gene_id: Fnod_1073
symbol: Fnod_1073
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tma:TM1163 conserved hypothetical protein, GGDEF domain.


ensembl_gene_id: Fnod_1075
symbol: minC
gene_biotype: protein_coding
description:
  Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: Fnod_1076
symbol: Fnod_1076
gene_biotype: protein_coding
description:
  Peptidase M42 family protein; PFAM: peptidase M18 aminopeptidase I; peptidase M20; peptidase M42 family protein; KEGG: tma:TM1048 endoglucanase.


ensembl_gene_id: Fnod_1079
symbol: fhs
gene_biotype: protein_coding
description:
  PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: tma:TM1766 formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.


ensembl_gene_id: Fnod_1081
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: Fnod_1082
symbol: Fnod_1082
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lbl:LBL_1710 site-specific recombinase XerD; Belongs to the 'phage' integrase family.


ensembl_gene_id: Fnod_1083
symbol: Fnod_1083
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: Fnod_1084
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: Fnod_1085
symbol: queH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).


ensembl_gene_id: Fnod_1087
symbol: Fnod_1087
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: tma:TM0733 sigma-B regulator, putative.


ensembl_gene_id: Fnod_1088
symbol: Fnod_1088
gene_biotype: protein_coding
description:
  PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: tma:TM1239 hypothetical protein.


ensembl_gene_id: Fnod_1090
symbol: Fnod_1090
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN0882 hemin transport system ATP-binding protein hmuV.


ensembl_gene_id: Fnod_1091
symbol: Fnod_1091
gene_biotype: protein_coding
description:
  TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: tpt:Tpet_0108 uracil-xanthine permease.


ensembl_gene_id: Fnod_1092
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Fnod_1093
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Fnod_1095
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assi [...]


ensembl_gene_id: Fnod_1096
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: Fnod_1097
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: Fnod_1099
symbol: Fnod_1099
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1682 hypothetical protein.


ensembl_gene_id: Fnod_1100
symbol: Fnod_1100
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tma:TM1143 methyl-accepting chemotaxis protein.


ensembl_gene_id: Fnod_1101
symbol: Fnod_1101
gene_biotype: protein_coding
description:
  Response regulator receiver modulated metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: aha:AHA_1572 HD domain protein.


ensembl_gene_id: Fnod_1104
symbol: Fnod_1104
gene_biotype: protein_coding
description:
  Protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase CheR-type; KEGG: tma:TM0464 putative chemotaxis protein methyltransferase.


ensembl_gene_id: Fnod_1107
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Fnod_1110
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Fnod_1111
symbol: rpsD
gene_biotype: protein_coding
description:
  RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: Fnod_1112
symbol: rpsK
gene_biotype: protein_coding
description:
  Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Fnod_1113
symbol: rpsM
gene_biotype: protein_coding
description:
  Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Fnod_1114
symbol: rpmJ
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L36; KEGG: tpt:Tpet_1316 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Fnod_1115
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: Fnod_1116
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Fnod_1117
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: Fnod_1118
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Fnod_1119
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Fnod_1121
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Fnod_1122
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Fnod_1123
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Fnod_1124
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Fnod_1125
symbol: rpsZ
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: Fnod_1126
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Fnod_1127
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: Fnod_1128
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Fnod_1129
symbol: rpsQ
gene_biotype: protein_coding
description:
  Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Fnod_1130
symbol: rpmC
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L29; KEGG: tpt:Tpet_1300 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: Fnod_1131
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Fnod_1132
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Fnod_1133
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).


ensembl_gene_id: Fnod_1134
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Fnod_1135
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Fnod_1136
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Fnod_1137
symbol: rplD
gene_biotype: protein_coding
description:
  Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.


ensembl_gene_id: Fnod_1138
symbol: rplC
gene_biotype: protein_coding
description:
  Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: Fnod_1139
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Fnod_1140
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Fnod_1141
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: Fnod_1142
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Fnod_1144
symbol: Fnod_1144
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tma:TM0767 maltodextrin glycosyltransferase.


ensembl_gene_id: Fnod_1147
symbol: Fnod_1147
gene_biotype: protein_coding
description:
  Glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pho:PH0597 D-3-phosphoglycerate dehydrogenase.


ensembl_gene_id: Fnod_1149
symbol: Fnod_1149
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tma:TM1389 ubiquinone/menaquinone biosynthesis methyltransferase-related protein.


ensembl_gene_id: Fnod_1150
symbol: Fnod_1150
gene_biotype: protein_coding
description:
  IMP cyclohydrolase; PFAM: MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region; KEGG: tte:TTE0592 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful).


ensembl_gene_id: Fnod_1151
symbol: Fnod_1151
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lpn:lpg1500 oxidoreductase, short chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Fnod_1154
symbol: lysS
gene_biotype: protein_coding
description:
  TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: tma:TM1705 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Fnod_1155
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: Fnod_1156
symbol: nrdR
gene_biotype: protein_coding
description:
  ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: Fnod_1158
symbol: Fnod_1158
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: Fnod_1165
symbol: Fnod_1165
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0884 methyltransferase, putative.


ensembl_gene_id: Fnod_1166
symbol: coaX
gene_biotype: protein_coding
description:
  Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.


ensembl_gene_id: Fnod_1167
symbol: Fnod_1167
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1547 hypothetical protein.


ensembl_gene_id: Fnod_1168
symbol: Fnod_1168
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: sth:STH147 oligopeptide ABC transporter substrate-binding protein.


ensembl_gene_id: Fnod_1169
symbol: Fnod_1169
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_2194 putative peptide transport system permease.


ensembl_gene_id: Fnod_1170
symbol: Fnod_1170
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_2195 putative peptide transport permease.


ensembl_gene_id: Fnod_1171
symbol: Fnod_1171
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pho:PH1959 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Fnod_1172
symbol: Fnod_1172
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: smr:Smar_0342 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Fnod_1175
symbol: ldh
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.


ensembl_gene_id: Fnod_1176
symbol: Fnod_1176
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tpt:Tpet_0965 alpha amylase, catalytic region.


ensembl_gene_id: Fnod_1180
symbol: Fnod_1180
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 13 domain protein; KEGG: tpt:Tpet_0960 glycoside hydrolase, family 13 domain protein.


ensembl_gene_id: Fnod_1181
symbol: Fnod_1181
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC2475 possible 5-Nitroimidazole antibiotics resistance protein, NimA-family.


ensembl_gene_id: Fnod_1182
symbol: Fnod_1182
gene_biotype: protein_coding
description:
  Aminotransferase class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: cdf:CD1339 aspartate aminotransferase.


ensembl_gene_id: Fnod_1184
symbol: Fnod_1184
gene_biotype: protein_coding
description:
  TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tpt:Tpet_1642 phosphodiesterase, MJ0936 family.


ensembl_gene_id: Fnod_1185
symbol: Fnod_1185
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LacI; sigma-54 DNA-binding domain protein; KEGG: tte:TTE1764 DNA-directed RNA polymerase specialized sigma subunits, sigma54 homologs.


ensembl_gene_id: Fnod_1187
symbol: psuG
gene_biotype: protein_coding
description:
  Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.


ensembl_gene_id: Fnod_1189
symbol: Fnod_1189
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_429 hypothetical protein.


ensembl_gene_id: Fnod_1192
symbol: Fnod_1192
gene_biotype: protein_coding
description:
  PFAM: helix-hairpin-helix motif; Radical SAM domain protein; KEGG: fnu:FN0954 hypothetical cytosolic protein.


ensembl_gene_id: Fnod_1193
symbol: asnS
gene_biotype: protein_coding
description:
  TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gtn:GTNG_2106 asparaginyl-tRNA synthetase.


ensembl_gene_id: Fnod_1199
symbol: Fnod_1199
gene_biotype: protein_coding
description:
  Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.


ensembl_gene_id: Fnod_1202
symbol: Fnod_1202
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tpt:Tpet_1579 metal dependent phosphohydrolase.


ensembl_gene_id: Fnod_1203
symbol: Fnod_1203
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Fnod_1205
symbol: Fnod_1205
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BG11338 Na+ extrusion transport system ATP-binding protein.


ensembl_gene_id: Fnod_1207
symbol: Fnod_1207
gene_biotype: protein_coding
description:
  PFAM: peptidase membrane zinc metallopeptidase putative; KEGG: cno:NT01CX_2243 hypothetical protein.


ensembl_gene_id: Fnod_1208
symbol: Fnod_1208
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpf:CPF_2170 cell envelope-related transcriptional attenuator domain protein.


ensembl_gene_id: Fnod_1212
symbol: Fnod_1212
gene_biotype: protein_coding
description:
  TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: tte:TTE2488 oligoendopeptidase F.


ensembl_gene_id: Fnod_1213
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: Fnod_1219
symbol: Fnod_1219
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: aba:Acid345_3711 transcriptional regulator, LuxR family.


ensembl_gene_id: Fnod_1220
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: Fnod_1222
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: Fnod_1224
symbol: Fnod_1224
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Fnod_1226
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Fnod_1227
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: Fnod_1229
symbol: tal
gene_biotype: protein_coding
description:
  Putative transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: Fnod_1230
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: Fnod_1231
symbol: Fnod_1231
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tpt:Tpet_1352 anti-sigma-factor antagonist.


ensembl_gene_id: Fnod_1233
symbol: Fnod_1233
gene_biotype: protein_coding
description:
  TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: RNA binding S1 domain protein; LytB protein; KEGG: tma:TM1445 30S ribosomal protein S1.


ensembl_gene_id: Fnod_1234
symbol: der
gene_biotype: protein_coding
description:
  Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Fnod_1236
symbol: Fnod_1236
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1682 hypothetical protein.


ensembl_gene_id: Fnod_1237
symbol: Fnod_1237
gene_biotype: protein_coding
description:
  SMART: extracellular solute-binding protein family 3; KEGG: afu:AF1766 amino-acid ABC transporter, periplasmic binding protein/protein kinase.


ensembl_gene_id: Fnod_1238
symbol: rpsB
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S2; KEGG: tma:TM0762 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: Fnod_1239
symbol: Fnod_1239
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; UAA transporter; KEGG: tma:TM1017 hypothetical protein.


ensembl_gene_id: Fnod_1240
symbol: Fnod_1240
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: pho:PH0753 multiple sugar transport system substrate-binding protein.


ensembl_gene_id: Fnod_1242
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: Fnod_1243
symbol: grpE
gene_biotype: protein_coding
description:
  GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: Fnod_1244
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: Fnod_1246
symbol: Fnod_1246
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: bca:BCE_5573 response regulator LytR.


ensembl_gene_id: Fnod_1247
symbol: Fnod_1247
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: vfi:VFA0733 two component sensor histidine kinase.


ensembl_gene_id: Fnod_1248
symbol: Fnod_1248
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: tpt:Tpet_0535 anaerobic ribonucleoside-triphosphate reductase activator.


ensembl_gene_id: Fnod_1249
symbol: Fnod_1249
gene_biotype: protein_coding
description:
  TIGRFAM: Anaerobic ribonucleoside-triphosphate reductase class III; KEGG: tma:TM0385 anaerobic ribonucleoside triphosphate reductase.


ensembl_gene_id: Fnod_1250
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: Fnod_1252
symbol: Fnod_1252
gene_biotype: protein_coding
description:
  TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: sth:STH2489 GntP family permease.


ensembl_gene_id: Fnod_1254
symbol: trpB
gene_biotype: protein_coding
description:
  Pyridoxal-phosphate dependent TrpB-like enzyme; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Fnod_1255
symbol: Fnod_1255
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssu:SSU05_0742 cobalt ABC transporter ATP-binding protein.


ensembl_gene_id: Fnod_1256
symbol: Fnod_1256
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssu:SSU05_0741 cobalt ABC transporter ATP-binding protein.


ensembl_gene_id: Fnod_1259
symbol: Fnod_1259
gene_biotype: protein_coding
description:
  TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1415 FeS assembly ATPase SufC.


ensembl_gene_id: Fnod_1264
symbol: Fnod_1264
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF52; KEGG: tma:TM0087 hypothetical protein; Belongs to the MEMO1 family.


ensembl_gene_id: Fnod_1265
symbol: Fnod_1265
gene_biotype: protein_coding
description:
  PFAM: type II and III secretion system protein; KEGG: tma:TM0088 comE protein, putative; Belongs to the bacterial secretin family.


ensembl_gene_id: Fnod_1272
symbol: Fnod_1272
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0222 ABC transporter, ATP-binding protein.


ensembl_gene_id: Fnod_1274
symbol: Fnod_1274
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cbo:CBO0092 signaling protein.


ensembl_gene_id: Fnod_1275
symbol: Fnod_1275
gene_biotype: protein_coding
description:
  TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; KEGG: tte:TTE0252 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit.


ensembl_gene_id: Fnod_1277
symbol: Fnod_1277
gene_biotype: protein_coding
description:
  KEGG: tdn:Tmden_0219 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: Fnod_1278
symbol: Fnod_1278
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1063; KEGG: cbo:CBO2008 membrane protein; Belongs to the UPF0597 family.


ensembl_gene_id: Fnod_1279
symbol: Fnod_1279
gene_biotype: protein_coding
description:
  PFAM: methylenetetrahydrofolate reductase; KEGG: sru:SRU_2094 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Fnod_1281
symbol: Fnod_1281
gene_biotype: protein_coding
description:
  Protein of unknown function DUF39; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF39; KEGG: mth:MTH855 inosine-5'-monophosphate dehydrogenase related protein VIII.


ensembl_gene_id: Fnod_1282
symbol: Fnod_1282
gene_biotype: protein_coding
description:
  TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: mka:MK0109 aspartokinase; Belongs to the aspartokinase family.


ensembl_gene_id: Fnod_1284
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Fnod_1288
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: Fnod_1289
symbol: Fnod_1289
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_1316 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Fnod_1290
symbol: Fnod_1290
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: Fnod_1291
symbol: recA
gene_biotype: protein_coding
description:
  recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Fnod_1293
symbol: rny
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.


ensembl_gene_id: Fnod_1294
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: Fnod_1295
symbol: Fnod_1295
gene_biotype: protein_coding
description:
  TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: tma:TM0224 biotin--(acetyl-CoA carboxylase) synthetase.


ensembl_gene_id: Fnod_1296
symbol: Fnod_1296
gene_biotype: protein_coding
description:
  TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: ftn:FTN_0917 serine-type D-Ala-D-Ala carboxypeptidase.


ensembl_gene_id: Fnod_1297
symbol: Fnod_1297
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: mba:Mbar_A0478 hypothetical protein.


ensembl_gene_id: Fnod_1299
symbol: Fnod_1299
gene_biotype: protein_coding
description:
  Metallophosphoesterase; PFAM: Pyrrolo-quinoline quinone; metallophosphoesterase; KEGG: bfs:BF0376 putative PQQ-binding exported phosphoesterase.


ensembl_gene_id: Fnod_1300
symbol: Fnod_1300
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tma:TM1428 methyl-accepting chemotaxis protein.


ensembl_gene_id: Fnod_1303
symbol: Fnod_1303
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bth:BT_0688 cAMP-binding domain (catabolite gene activator) transcriptional regulator.


ensembl_gene_id: Fnod_1304
symbol: Fnod_1304
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE2782 ABC transporter, ATP-binding/permease protein.


ensembl_gene_id: Fnod_1305
symbol: Fnod_1305
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE2781 ABC transporter, ATP-binding/permease protein.


ensembl_gene_id: Fnod_1306
symbol: Fnod_1306
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pho:PH0655 threonine 3-dehydrogenase.


ensembl_gene_id: Fnod_1307
symbol: Fnod_1307
gene_biotype: protein_coding
description:
  Pyridoxal phosphate-dependent acyltransferase, putative; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.


ensembl_gene_id: Fnod_1309
symbol: Fnod_1309
gene_biotype: protein_coding
description:
  Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family.


ensembl_gene_id: Fnod_1310
symbol: Fnod_1310
gene_biotype: protein_coding
description:
  TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; KEGG: tma:TM0880 oxaloacetate decarboxylase, beta subunit.


ensembl_gene_id: Fnod_1312
symbol: Fnod_1312
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tma:TM0878 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit.


ensembl_gene_id: Fnod_1313
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: Fnod_1316
symbol: Fnod_1316
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pfu:PF1948 lactoylglutathione lyase.


ensembl_gene_id: Fnod_1319
symbol: Fnod_1319
gene_biotype: protein_coding
description:
  PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: tma:TM0717 methylmalonyl-CoA decarboxylase gamma chain.


ensembl_gene_id: Fnod_1321
symbol: Fnod_1321
gene_biotype: protein_coding
description:
  TIGRFAM: LAO/AO transport system ATPase; PFAM: cobalamin synthesis protein P47K; ArgK protein; KEGG: pfu:PF1947 hypothetical protein.


ensembl_gene_id: Fnod_1322
symbol: Fnod_1322
gene_biotype: protein_coding
description:
  PFAM: cobalamin B12-binding domain protein; KEGG: pab:PAB2187 methylmalonyl-CoA mutase, subunit alpha, C-terminus.


ensembl_gene_id: Fnod_1325
symbol: Fnod_1325
gene_biotype: protein_coding
description:
  Cupin 2 conserved barrel domain protein; PFAM: helix-turn-helix domain protein; protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: tma:TM0656 hypothetical protein.


ensembl_gene_id: Fnod_1326
symbol: speE
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.


ensembl_gene_id: Fnod_1327
symbol: speH
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase related; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: Fnod_1329
symbol: Fnod_1329
gene_biotype: protein_coding
description:
  PFAM: biotin/lipoate A/B protein ligase; KEGG: chy:CHY_0495 biotin/lipoate A/B protein ligase family protein.


ensembl_gene_id: Fnod_1330
symbol: rsmI
gene_biotype: protein_coding
description:
  Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Fnod_1336
symbol: thyX
gene_biotype: protein_coding
description:
  Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: Fnod_1338
symbol: folD
gene_biotype: protein_coding
description:
  Tetrahydrofolate dehydrogenase/cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Fnod_1339
symbol: Fnod_1339
gene_biotype: protein_coding
description:
  TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: tma:TM0859 preprotein translocase YajC subunit.


ensembl_gene_id: Fnod_1340
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Fnod_1341
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Fnod_1342
symbol: hppA
gene_biotype: protein_coding
description:
  V-type H(+)-translocating pyrophosphatase; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.


ensembl_gene_id: Fnod_1343
symbol: Fnod_1343
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family.


ensembl_gene_id: Fnod_1347
symbol: Fnod_1347
gene_biotype: protein_coding
description:
  Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: tpt:Tpet_0600 heavy metal translocating P-type ATPase.


ensembl_gene_id: Fnod_1349
symbol: Fnod_1349
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tpt:Tpet_1779 diguanylate cyclase.


ensembl_gene_id: Fnod_1351
symbol: Fnod_1351
gene_biotype: protein_coding
description:
  PFAM: PfkB domain protein; KEGG: deb:DehaBAV1_1157 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Fnod_1354
symbol: Fnod_1354
gene_biotype: protein_coding
description:
  PFAM: WD-40 repeat protein; SMART: Pyrrolo-quinoline quinone; KEGG: ddi:DDB_0191333 myosin heavy chain kinase.


ensembl_gene_id: Fnod_1355
symbol: Fnod_1355
gene_biotype: protein_coding
description:
  KEGG: tet:TTHERM_00393070 hypothetical protein Pfam: VAR1 Prefoldin_2 Vicilin_N MAP7 Mod_r M NPV_P10 Apolipoprotein HSBP1 SNARE.


ensembl_gene_id: Fnod_1362
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.


ensembl_gene_id: Fnod_1363
symbol: rgy
gene_biotype: protein_coding
description:
  Reverse gyrase; Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication; In the C-terminal section; belongs to the prokaryotic type I/III topoisomerase family.


ensembl_gene_id: Fnod_1364
symbol: Fnod_1364
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: tpt:Tpet_1408 extracellular solute-binding protein, family 1.


ensembl_gene_id: Fnod_1365
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: Fnod_1368
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: Fnod_1370
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: Fnod_1371
symbol: Fnod_1371
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class I and II; KEGG: pho:PH0377 putative histidinol-phosphate aminotransferase.


ensembl_gene_id: Fnod_1372
symbol: Fnod_1372
gene_biotype: protein_coding
description:
  TIGRFAM: putative ATP binding protein; PFAM: protein of unknown function DUF71 ATP-binding region; KEGG: afu:AF0720 hypothetical protein.


ensembl_gene_id: Fnod_1373
symbol: Fnod_1373
gene_biotype: protein_coding
description:
  TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cno:NT01CX_0356 cob(I)alamin adenosyltransferase.


ensembl_gene_id: Fnod_1377
symbol: Fnod_1377
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: cdf:CD0705 putative DNA repair protein; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Fnod_1378
symbol: Fnod_1378
gene_biotype: protein_coding
description:
  Succinate--CoA ligase (ADP-forming); PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: mja:MJ0210 succinyl-CoA synthetase beta chain.


ensembl_gene_id: Fnod_1379
symbol: Fnod_1379
gene_biotype: protein_coding
description:
  PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: mka:MK0732 succinyl-CoA synthetase alpha subunit.


ensembl_gene_id: Fnod_1382
symbol: Fnod_1382
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tpt:Tpet_0148 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: Fnod_1383
symbol: Fnod_1383
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; KEGG: rbe:RBE_0106 deoxyribodipyrimidine photo-lyase.


ensembl_gene_id: Fnod_1385
symbol: Fnod_1385
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; KEGG: tpt:Tpet_1098 CRISPR-associated protein DxTHG motif.


ensembl_gene_id: Fnod_1388
symbol: Fnod_1388
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; TIGRFAM: CRISPR-associated protein, Csm1 family; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: csc:Csac_0075 CRISPR-associated protein, Csm1 family.


ensembl_gene_id: Fnod_1390
symbol: Fnod_1390
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0077 CRISPR-associated RAMP protein, Csm3 family.


ensembl_gene_id: Fnod_1391
symbol: Fnod_1391
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0078 CRISPR-associated RAMP protein, Csm4 family.


ensembl_gene_id: Fnod_1392
symbol: Fnod_1392
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0079 CRISPR-associated RAMP protein, Csm5 family.


ensembl_gene_id: Fnod_1404
symbol: Fnod_1404
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: tfu:Tfu_1124 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal.


ensembl_gene_id: Fnod_1405
symbol: Fnod_1405
gene_biotype: protein_coding
description:
  KEGG: ehi:388.t00006 hypothetical protein Pfam: PH DUF1090 MAP7 DUF904 DUF1410 UVR PROSITE: GLU_RICH LYS_RICH PH_DOMAIN.


ensembl_gene_id: Fnod_1406
symbol: Fnod_1406
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: csc:Csac_0015 type III restriction enzyme, res subunit.


ensembl_gene_id: Fnod_1407
symbol: Fnod_1407
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: csc:Csac_0014 methyltransferase type 11.


ensembl_gene_id: Fnod_1408
symbol: Fnod_1408
gene_biotype: protein_coding
description:
  Transposase IS605 OrfB; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: csc:Csac_1237 transposase, IS605 OrfB.


ensembl_gene_id: Fnod_1413
symbol: Fnod_1413
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tma:TM1773 hypothetical protein.


ensembl_gene_id: Fnod_1414
symbol: Fnod_1414
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: tma:TM1603 permease, putative.


ensembl_gene_id: Fnod_1415
symbol: Fnod_1415
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: Fnod_1416
symbol: Fnod_1416
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: tma:TM1827 riboflavin synthase alpha chain.


ensembl_gene_id: Fnod_1417
symbol: ribA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.  In the N-terminal section; belongs to the DHBP synthase family.


ensembl_gene_id: Fnod_1418
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Fnod_1420
symbol: Fnod_1420
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tpt:Tpet_0140 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Fnod_1421
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.


ensembl_gene_id: Fnod_1422
symbol: thi4
gene_biotype: protein_coding
description:
  Thiazole biosynthesis enzyme; Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur.


ensembl_gene_id: Fnod_1425
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: Fnod_1427
symbol: Fnod_1427
gene_biotype: protein_coding
description:
  TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; pullanase-associated protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tpt:Tpet_0959 pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Fnod_1429
symbol: Fnod_1429
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_1508 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_1430
symbol: Fnod_1430
gene_biotype: protein_coding
description:
  TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_1509 phosphate ABC transporter, inner membrane subunit PstA.


ensembl_gene_id: Fnod_1431
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: Fnod_1433
symbol: Fnod_1433
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tpt:Tpet_1512 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Fnod_1435
symbol: Fnod_1435
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pth:PTH_0201 hypothetical membrane protein.


ensembl_gene_id: Fnod_1439
symbol: Fnod_1439
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tpt:Tpet_1513 histidine kinase.


ensembl_gene_id: Fnod_1441
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Fnod_1442
symbol: Fnod_1442
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: deh:cbdb_A1667 putative dihydroflavonol 4-reductase.


ensembl_gene_id: Fnod_1443
symbol: Fnod_1443
gene_biotype: protein_coding
description:
  Transcriptional regulator, TrmB; PFAM: regulatory protein MarR; regulatory protein ArsR; transcriptional regulator TrmB; KEGG: tpt:Tpet_0111 transcriptional regulator, MarR family.


ensembl_gene_id: Fnod_1445
symbol: Fnod_1445
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: Fnod_1446
symbol: Fnod_1446
gene_biotype: protein_coding
description:
  Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: Fnod_1447
symbol: Fnod_1447
gene_biotype: protein_coding
description:
  PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: chy:CHY_0236 hypothetical protein.


ensembl_gene_id: Fnod_1448
symbol: Fnod_1448
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: mta:Moth_2210 transcriptional regulator, PadR-like family.


ensembl_gene_id: Fnod_1449
symbol: Fnod_1449
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: swo:Swol_1787 glutamate--ammonia ligase.


ensembl_gene_id: Fnod_1450
symbol: Fnod_1450
gene_biotype: protein_coding
description:
  TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; KEGG: tpt:Tpet_0065 glucose-1-phosphate thymidyltransferase.


ensembl_gene_id: Fnod_1451
symbol: Fnod_1451
gene_biotype: protein_coding
description:
  TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ctc:CTC00366 predicted hydrolase.


ensembl_gene_id: Fnod_1453
symbol: hisS
gene_biotype: protein_coding
description:
  TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: tma:TM1090 histidyl-tRNA synthetase.


ensembl_gene_id: Fnod_1457
symbol: Fnod_1457
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: btk:BT9727_5106 beta-1,3-N-acetylglucosaminyltransferase.


ensembl_gene_id: Fnod_1463
symbol: Fnod_1463
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: chromosome segregation and condensation protein ScpB; KEGG: tpt:Tpet_0426 putative transcriptional regulator.


ensembl_gene_id: Fnod_1464
symbol: Fnod_1464
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Fnod_1465
symbol: Fnod_1465
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: tpt:Tpet_0035 CBS domain containing protein.


ensembl_gene_id: Fnod_1467
symbol: Fnod_1467
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: Fnod_1468
symbol: Fnod_1468
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: tpt:Tpet_1610 extracellular ligand-binding receptor.


ensembl_gene_id: Fnod_1470
symbol: Fnod_1470
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: tma:TM1136 branched-chain amino acid transport system permease protein.


ensembl_gene_id: Fnod_1471
symbol: Fnod_1471
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: tpt:Tpet_1608 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Fnod_1472
symbol: Fnod_1472
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1138 branched-chain amino acid transport system ATP-binding protein.


ensembl_gene_id: Fnod_1473
symbol: Fnod_1473
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1139 branched-chain amino acid transport system ATP-binding protein.


ensembl_gene_id: Fnod_1474
symbol: Fnod_1474
gene_biotype: protein_coding
description:
  TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; KEGG: tte:TTE1009 L-serine deaminase.


ensembl_gene_id: Fnod_1475
symbol: Fnod_1475
gene_biotype: protein_coding
description:
  TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: serine dehydratase beta chain; KEGG: cpf:CPF_2959 L-serine dehydratase, iron-sulfur-dependent, beta subunit.


ensembl_gene_id: Fnod_1476
symbol: Fnod_1476
gene_biotype: protein_coding
description:
  Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: Fnod_1477
symbol: Fnod_1477
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: tma:TM0757 hypothetical protein.


ensembl_gene_id: Fnod_1480
symbol: Fnod_1480
gene_biotype: protein_coding
description:
  PFAM: transferase hexapeptide repeat containing protein; KEGG: tma:TM0759 acyltransferase, putative.


ensembl_gene_id: Fnod_1483
symbol: Fnod_1483
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: glycosyl transferase group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: tpt:Tpet_0172 glycosyl transferase, family 2.


ensembl_gene_id: Fnod_1488
symbol: Fnod_1488
gene_biotype: protein_coding
description:
  TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; KEGG: tma:TM1653 pyrimidine-nucleoside phosphorylase.


ensembl_gene_id: Fnod_1489
symbol: Fnod_1489
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: tma:TM1654 sensor histidine kinase HpkA.


ensembl_gene_id: Fnod_1490
symbol: Fnod_1490
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tpt:Tpet_1136 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Fnod_1493
symbol: hslO
gene_biotype: protein_coding
description:
  Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: Fnod_1494
symbol: Fnod_1494
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tpt:Tpet_1244 polysaccharide biosynthesis protein CapD.


ensembl_gene_id: Fnod_1495
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Fnod_1496
symbol: Fnod_1496
gene_biotype: protein_coding
description:
  Diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tpt:Tpet_0817 putative diguanylate cyclase.


ensembl_gene_id: Fnod_1498
symbol: Fnod_1498
gene_biotype: protein_coding
description:
  TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: tpt:Tpet_0330 cell shape determining protein, MreB/Mrl family.


ensembl_gene_id: Fnod_1499
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Fnod_1501
symbol: Fnod_1501
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: Fnod_1502
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: Fnod_1503
symbol: Fnod_1503
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: Fnod_1505
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: Fnod_1506
symbol: Fnod_1506
gene_biotype: protein_coding
description:
  TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase; KEGG: tma:TM0239 glucose-1-phosphate adenylyltransferase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: Fnod_1507
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: Fnod_1508
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: Fnod_1509
symbol: Fnod_1509
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0102; KEGG: tpt:Tpet_0671 protein of unknown function UPF0102; Belongs to the UPF0102 family.


ensembl_gene_id: Fnod_1510
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: Fnod_1511
symbol: csrA
gene_biotype: protein_coding
description:
  Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.


ensembl_gene_id: Fnod_1512
symbol: fliW
gene_biotype: protein_coding
description:
  Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.


ensembl_gene_id: Fnod_1517
symbol: dxs
gene_biotype: protein_coding
description:
  Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Fnod_1518
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: Fnod_1519
symbol: mtnA
gene_biotype: protein_coding
description:
  Putative translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: Fnod_1520
symbol: Fnod_1520
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: tpt:Tpet_1694 TrkA-N domain protein.


ensembl_gene_id: Fnod_1522
symbol: leuS
gene_biotype: protein_coding
description:
  TIGRFAM: leucyl-tRNA synthetase; KEGG: tpt:Tpet_0757 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Fnod_1525
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: Fnod_1526
symbol: Fnod_1526
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: Fnod_1527
symbol: Fnod_1527
gene_biotype: protein_coding
description:
  TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bcz:BCZK3352 imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family.


ensembl_gene_id: Fnod_1529
symbol: Fnod_1529
gene_biotype: protein_coding
description:
  PFAM: Heptaprenyl diphosphate synthase component I; KEGG: tpt:Tpet_1237 heptaprenyl diphosphate synthase component I.


ensembl_gene_id: Fnod_1531
symbol: Fnod_1531
gene_biotype: protein_coding
description:
  CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: tpt:Tpet_0251 CheC, inhibitor of MCP methylation.


ensembl_gene_id: Fnod_1532
symbol: Fnod_1532
gene_biotype: protein_coding
description:
  PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: tma:TM0679 flagellar motor switch protein FliM.


ensembl_gene_id: Fnod_1533
symbol: Fnod_1533
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: Fnod_1537
symbol: Fnod_1537
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: tpt:Tpet_0257 protein of unknown function DUF1078 domain protein.


ensembl_gene_id: Fnod_1538
symbol: Fnod_1538
gene_biotype: protein_coding
description:
  Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: Fnod_1539
symbol: Fnod_1539
gene_biotype: protein_coding
description:
  PFAM: flagellar hook-length control protein; KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, putative Pfam: Nha1_C Rho_Binding ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL HAP1_N EzrA DUF948 Rab5-bind Laminin_I MpPF2 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH.


ensembl_gene_id: Fnod_1541
symbol: Fnod_1541
gene_biotype: protein_coding
description:
  TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: tma:TM1651 elongation factor EF-G.


ensembl_gene_id: Fnod_1543
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: Fnod_1544
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: Fnod_1549
symbol: Fnod_1549
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_0065 major facilitator superfamily MFS_1.


ensembl_gene_id: Fnod_1550
symbol: pfp
gene_biotype: protein_coding
description:
  Phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: Fnod_1553
symbol: Fnod_1553
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE0350 ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components.


ensembl_gene_id: Fnod_1554
symbol: Fnod_1554
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE0351 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: Fnod_1555
symbol: Fnod_1555
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE0352 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: Fnod_1556
symbol: Fnod_1556
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tte:TTE0353 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Fnod_1557
symbol: Fnod_1557
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_1549 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Fnod_1558
symbol: Fnod_1558
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 1; KEGG: pfu:PF0073 beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: Fnod_1560
symbol: Fnod_1560
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; KEGG: tma:TM1751 endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: Fnod_1561
symbol: Fnod_1561
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0533 putative oligopeptide transport system permease protein.


ensembl_gene_id: Fnod_1563
symbol: Fnod_1563
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0389 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_1564
symbol: Fnod_1564
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: tma:TM0531 putative oligopeptide transport system substrate-binding protein.


ensembl_gene_id: Fnod_1565
symbol: Fnod_1565
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0530 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Fnod_1566
symbol: Fnod_1566
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0498 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Fnod_1569
symbol: Fnod_1569
gene_biotype: protein_coding
description:
  PFAM: Exonuclease VII large subunit; KEGG: pgi:PG1128 exodeoxyribonuclease VII, large subunit; Belongs to the XseA family.


ensembl_gene_id: Fnod_1570
symbol: Fnod_1570
gene_biotype: protein_coding
description:
  Alpha-glucosidase; PFAM: glycoside hydrolase family 31; KEGG: tte:TTE0006 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.


ensembl_gene_id: Fnod_1571
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: Fnod_1572
symbol: Fnod_1572
gene_biotype: protein_coding
description:
  TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tpt:Tpet_0674 DNA protecting protein DprA.


ensembl_gene_id: Fnod_1578
symbol: Fnod_1578
gene_biotype: protein_coding
description:
  PFAM: methylenetetrahydrofolate reductase; KEGG: tpt:Tpet_0654 methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Fnod_1579
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: Fnod_1580
symbol: Fnod_1580
gene_biotype: protein_coding
description:
  PFAM: sodium:neurotransmitter symporter; KEGG: tko:TK1432 sodium-dependent transporter, SNF family; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.


ensembl_gene_id: Fnod_1584
symbol: Fnod_1584
gene_biotype: protein_coding
description:
  PFAM: ABC-2 type transporter; KEGG: tma:TM1100 putative ABC-2 type transport system permease protein.


ensembl_gene_id: Fnod_1586
symbol: Fnod_1586
gene_biotype: protein_coding
description:
  Competence/damage-inducible protein CinA; TIGRFAM: molybdenum cofactor synthesis domain; competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: tma:TM0703 competence-damage inducible protein, putative.


ensembl_gene_id: Fnod_1587
symbol: Fnod_1587
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tth:TTC0455 transcriptional repressor.


ensembl_gene_id: Fnod_1592
symbol: Fnod_1592
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ctc:CTC00276 iron(III)-transport ATP-binding protein sfuC; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Fnod_1600
symbol: Fnod_1600
gene_biotype: protein_coding
description:
  Glucan endo-1,3-beta-D-glucosidase; PFAM: glycoside hydrolase family 16; KEGG: tma:TM0024 laminarinase.


ensembl_gene_id: Fnod_1601
symbol: Fnod_1601
gene_biotype: protein_coding
description:
  Alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tma:TM1218 transcriptional regulator, LacI family.


ensembl_gene_id: Fnod_1608
symbol: Fnod_1608
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: tma:TM1639 electron transfer protein, putative.


ensembl_gene_id: Fnod_1614
symbol: Fnod_1614
gene_biotype: protein_coding
description:
  PFAM: Heavy metal transport/detoxification protein; KEGG: csc:Csac_0477 heavy metal translocating P-type ATPase.


ensembl_gene_id: Fnod_1637
symbol: Fnod_1637
gene_biotype: protein_coding
description:
  ABC-type Fe3+ transport system permease component-like protein; KEGG: pde:Pden_4650 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Fnod_1639
symbol: Fnod_1639
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: csc:Csac_0386 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein.


ensembl_gene_id: Fnod_1640
symbol: Fnod_1640
gene_biotype: protein_coding
description:
  SMART: transglutaminase domain protein; KEGG: tte:TTE0036 transglutaminase-like enzyme, putative cysteine protease.


ensembl_gene_id: Fnod_1641
symbol: Fnod_1641
gene_biotype: protein_coding
description:
  TIGRFAM: putative delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: drm:Dred_1731 putative delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Fnod_1642
symbol: Fnod_1642
gene_biotype: protein_coding
description:
  PFAM: cobalamin B12-binding domain protein; D-Lysine 56-aminomutase alpha subunit; KEGG: tte:TTE1238 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).


ensembl_gene_id: Fnod_1648
symbol: Fnod_1648
gene_biotype: protein_coding
description:
  TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: tpt:Tpet_1648 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: Fnod_1649
symbol: Fnod_1649
gene_biotype: protein_coding
description:
  PFAM: methyltransferase small; Methyltransferase type 11; KEGG: tpt:Tpet_0239 methyltransferase type 11.


ensembl_gene_id: Fnod_1650
symbol: Fnod_1650
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: tma:TM0082 flagellar hook-associated protein 3.


ensembl_gene_id: Fnod_1651
symbol: Fnod_1651
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tpt:Tpet_0841 flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: Fnod_1653
symbol: Fnod_1653
gene_biotype: protein_coding
description:
  Putative anti-sigma-28 factor, FlgM; KEGG: tma:TM0085 negative regulator of flagellin synthesis FlgM.


ensembl_gene_id: Fnod_1654
symbol: rlmH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: Fnod_1657
symbol: Fnod_1657
gene_biotype: protein_coding
description:
  Ribosomal L11 methyltransferase; PFAM: protein of unknown function Met10; methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: tma:TM1079 ribosomal protein L11 methyltransferase, putative.


ensembl_gene_id: Fnod_1658
symbol: Fnod_1658
gene_biotype: protein_coding
description:
  Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: tpt:Tpet_0511 peptidase M23B.


ensembl_gene_id: Fnod_1659
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: Fnod_1661
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.


ensembl_gene_id: Fnod_1663
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: Fnod_1667
symbol: Fnod_1667
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1909 ABC transporter (ATP-binding protein).


ensembl_gene_id: Fnod_1668
symbol: Fnod_1668
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: tte:TTE0292 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.


ensembl_gene_id: Fnod_1671
symbol: Fnod_1671
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: tpt:Tpet_1520 phosphoribosylformylglycinamidine cyclo-ligase.


ensembl_gene_id: Fnod_1672
symbol: Fnod_1672
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: tma:TM1250 phosphoribosylamine--glycine ligase.


ensembl_gene_id: Fnod_1674
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: Fnod_1675
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: Fnod_1676
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: Fnod_1678
symbol: Fnod_1678
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF370; KEGG: tpt:Tpet_0986 protein of unknown function DUF370; Belongs to the RemA family.


ensembl_gene_id: Fnod_1683
symbol: Fnod_1683
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tpt:Tpet_0953 alpha amylase, catalytic region.


ensembl_gene_id: Fnod_1684
symbol: Fnod_1684
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: gsu:GSU1495 sigma-54 dependent DNA-binding response regulator.


ensembl_gene_id: Fnod_1692
symbol: Fnod_1692
gene_biotype: protein_coding
description:
  tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.


ensembl_gene_id: Fnod_1693
symbol: Fnod_1693
gene_biotype: protein_coding
description:
  TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: tpt:Tpet_0182 carboxyl-terminal protease.


ensembl_gene_id: Fnod_1697
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: Fnod_1699
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Fnod_1702
symbol: Fnod_1702
gene_biotype: protein_coding
description:
  PFAM: peptidase M20; peptidase M42 family protein; KEGG: tpt:Tpet_1701 peptidase M42 family protein.


ensembl_gene_id: Fnod_1704
symbol: Fnod_1704
gene_biotype: protein_coding
description:
  TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: tpt:Tpet_1699 competence protein ComEA helix-hairpin-helix repeat protein.


ensembl_gene_id: Fnod_1706
symbol: Fnod_1706
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: mag:amb1111 signal transduction histidine kinase.


ensembl_gene_id: Fnod_1707
symbol: Fnod_1707
gene_biotype: protein_coding
description:
  SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5040 periplasmic binding protein.


ensembl_gene_id: Fnod_1711
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: Fnod_1714
symbol: Fnod_1714
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: Fnod_1715
symbol: Fnod_1715
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tma:TM1365 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: Fnod_1716
symbol: fliE
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: tma:TM1366 flagellar hook-basal body complex protein FliE.


ensembl_gene_id: Fnod_1718
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.


ensembl_gene_id: Fnod_1719
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine--tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: Fnod_1720
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: Fnod_1721
symbol: polC
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Fnod_1722
symbol: Fnod_1722
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: Fnod_1723
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: Fnod_1726
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Fnod_1727
symbol: Fnod_1727
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tma:TM0364 4-alpha-glucanotransferase.


ensembl_gene_id: Fnod_1728
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: Fnod_1732
symbol: Fnod_1732
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: tpt:Tpet_0923 putative cold-shock DNA-binding domain protein.


ensembl_gene_id: Fnod_1733
symbol: Fnod_1733
gene_biotype: protein_coding
description:
  HhH-GPD family protein; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: tma:TM0382 endonuclease III.


ensembl_gene_id: Fnod_1736
symbol: Fnod_1736
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tma:TM1217 glutamate synthase (NADPH) small chain.


ensembl_gene_id: Fnod_1737
symbol: Fnod_1737
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: tma:TM1216 NADH dehydrogenase I chain D; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: Fnod_1738
symbol: Fnod_1738
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: tma:TM1215 NADH dehydrogenase I chain C.


ensembl_gene_id: Fnod_1740
symbol: Fnod_1740
gene_biotype: protein_coding
description:
  PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tma:TM1213 NADH dehydrogenase I chain H.


ensembl_gene_id: Fnod_1741
symbol: Fnod_1741
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tma:TM1212 NADH dehydrogenase I chain M.


ensembl_gene_id: Fnod_1742
symbol: Fnod_1742
gene_biotype: protein_coding
description:
  PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tma:TM1211 putative NADH dehydrogenase I chain N.


ensembl_gene_id: Fnod_1743
symbol: Fnod_1743
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: tma:TM1210 putative multicomponent Na+:H+ antiporter subunit C.


ensembl_gene_id: Fnod_1744
symbol: Fnod_1744
gene_biotype: protein_coding
description:
  PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: tma:TM1209 putative multicomponent Na+:H+ antiporter subunit B.


ensembl_gene_id: Fnod_1746
symbol: Fnod_1746
gene_biotype: protein_coding
description:
  TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: tma:TM1207 putative multicomponent Na+:H+ antiporter subunit G.


ensembl_gene_id: Fnod_1747
symbol: Fnod_1747
gene_biotype: protein_coding
description:
  PFAM: multiple resistance and pH regulation protein F; KEGG: tma:TM1206 putative multicomponent Na+:H+ antiporter subunit F.


ensembl_gene_id: Fnod_1750
symbol: pdxT
gene_biotype: protein_coding
description:
  SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: Fnod_1751
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: Fnod_1752
symbol: Fnod_1752
gene_biotype: protein_coding
description:
  TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; KEGG: tte:TTE2389 Methylmalonyl-CoA mutase, N-terminal domain/subunit.


ensembl_gene_id: Fnod_1754
symbol: acpS
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: Fnod_1755
symbol: Fnod_1755
gene_biotype: protein_coding
description:
  Conserved carboxylase region; PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: tma:TM0128 oxaloacetate decarboxylase, alpha subunit.


ensembl_gene_id: Fnod_1757
symbol: tmcAL
gene_biotype: protein_coding
description:
  Protein of unknown function DUF795; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.


ensembl_gene_id: Fnod_1758
symbol: mfd
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Fnod_1762
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Fnod_1763
symbol: Fnod_1763
gene_biotype: protein_coding
description:
  TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tpt:Tpet_0927 septum site-determining protein MinD.


ensembl_gene_id: Fnod_1768
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: Fnod_1770
symbol: Fnod_1770
gene_biotype: protein_coding
description:
  3D domain protein; PFAM: Peptidoglycan-binding LysM; peptidase M23B; 3D domain protein; KEGG: tpt:Tpet_0350 peptidase M23B.


ensembl_gene_id: Fnod_1771
symbol: Fnod_1771
gene_biotype: protein_coding
description:
  TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: vei:Veis_2372 transcriptional regulator, BadM/Rrf2 family.


ensembl_gene_id: Fnod_1772
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: Fnod_1773
symbol: Fnod_1773
gene_biotype: protein_coding
description:
  TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: tpt:Tpet_0718 hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: Fnod_1774
symbol: Fnod_1774
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tpt:Tpet_0931 cell envelope-related transcriptional attenuator.


ensembl_gene_id: Fnod_1777
symbol: Fnod_1777
gene_biotype: protein_coding
description:
  TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: tpt:Tpet_0109 glycosyl transferase, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: Fnod_1778
symbol: rsmG
gene_biotype: protein_coding
description:
  Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: Fnod_1779
symbol: Fnod_1779
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: tpt:Tpet_0333 oxidoreductase domain protein.


ensembl_gene_id: Fnod_1780
symbol: Fnod_1780
gene_biotype: protein_coding
description:
  PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cbo:CBO0827 6-pyruvoyl tetrahydrobiopterin synthase.


ensembl_gene_id: Fnod_1781
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Fnod_1782
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Fnod_1783
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: Fnod_1784
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: Fnod_1785
symbol: Fnod_1785
gene_biotype: protein_coding
description:
  PFAM: penicillin-binding protein transpeptidase; KEGG: tpt:Tpet_0057 peptidoglycan glycosyltransferase.


ensembl_gene_id: Fnod_1787
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: Fnod_1788
symbol: Fnod_1788
gene_biotype: protein_coding
description:
  TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: tte:TTE0533 Carbamate kinase; Belongs to the carbamate kinase family.


