# geneInfo

ensembl_gene_id: VDG1235_1001
symbol: EDY81383.1
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: VDG1235_1003
symbol: EDY81385.1
gene_biotype: protein_coding
description:
  Peptidase families S8 and S53 domain protein; [O] COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.


ensembl_gene_id: VDG1235_1005
symbol: EDY81387.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family.


ensembl_gene_id: VDG1235_1006
symbol: EDY81388.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG0583 Transcriptional regulator; LysR substrate binding domain, putative; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: VDG1235_1007
symbol: EDY81389.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor plug domain protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.


ensembl_gene_id: VDG1235_1009
symbol: EDY81391.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: VDG1235_101
symbol: EDY80487.1
gene_biotype: protein_coding
description:
  Sugar (Glycoside-Pentoside-Hexuronide) transporter subfamily; [G] COG2211 Na+/melibiose symporter and related transporters.


ensembl_gene_id: VDG1235_1013
symbol: EDY81395.1
gene_biotype: protein_coding
description:
  CheR methyltransferase, SAM binding domain; [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins.


ensembl_gene_id: VDG1235_1017
symbol: EDY81399.1
gene_biotype: protein_coding
description:
  Putative esterase superfamily; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_1018
symbol: EDY81400.1
gene_biotype: protein_coding
description:
  Nickel-dependent hydrogenase superfamily; [C] COG3259 Coenzyme F420-reducing hydrogenase, alpha subunit.


ensembl_gene_id: VDG1235_1019
symbol: EDY81401.1
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.


ensembl_gene_id: VDG1235_1022
symbol: EDY81404.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins.


ensembl_gene_id: VDG1235_1024
symbol: EDY81406.1
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: VDG1235_1026
symbol: rsgA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: VDG1235_1032
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: VDG1235_1033
symbol: EDY81415.1
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family; [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_1035
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: VDG1235_1039
symbol: EDY81421.1
gene_biotype: protein_coding
description:
  NOL1/NOP2/sun family, putative; [J] COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: VDG1235_1042
symbol: EDY81424.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: VDG1235_1043
symbol: EDY81425.1
gene_biotype: protein_coding
description:
  Cytidine and deoxycytidylate deaminase zinc-binding region domain protein; [H] COG0117 Pyrimidine deaminase.


ensembl_gene_id: VDG1235_1045
symbol: EDY81427.1
gene_biotype: protein_coding
description:
  Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.


ensembl_gene_id: VDG1235_1046
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: VDG1235_105
symbol: EDY80491.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [K] COG1678 Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: VDG1235_1050
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: VDG1235_1052
symbol: EDY81434.1
gene_biotype: protein_coding
description:
  Oxidoreductase NAD-binding domain protein; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.


ensembl_gene_id: VDG1235_1055
symbol: EDY81437.1
gene_biotype: protein_coding
description:
  Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; [E] COG0019 Diaminopimelate decarboxylase.


ensembl_gene_id: VDG1235_1057
symbol: EDY81439.1
gene_biotype: protein_coding
description:
  ApbE family; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: VDG1235_1058
symbol: EDY81440.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: VDG1235_1059
symbol: EDY81441.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.


ensembl_gene_id: VDG1235_1062
symbol: EDY81444.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.


ensembl_gene_id: VDG1235_1065
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: VDG1235_1071
symbol: EDY81453.1
gene_biotype: protein_coding
description:
  NADH ubiquinone oxidoreductase, 20 Kd subunit family; [C] COG1941 Coenzyme F420-reducing hydrogenase, gamma subunit.


ensembl_gene_id: VDG1235_1078
symbol: EDY81460.1
gene_biotype: protein_coding
description:
  Filamentous haemagglutinin family N-terminal domain protein; [U] COG3210 Large exoproteins involved in heme utilization or adhesion.


ensembl_gene_id: VDG1235_1079
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: VDG1235_1083
symbol: rsmG
gene_biotype: protein_coding
description:
  Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: VDG1235_1084
symbol: EDY81466.1
gene_biotype: protein_coding
description:
  Phosphotransferase enzyme family, putative; [M] COG0510 Predicted choline kinase involved in LPS biosynthesis.


ensembl_gene_id: VDG1235_1086
symbol: EDY81468.1
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; [H] COG1995 Pyridoxal phosphate biosynthesis protein; Belongs to the PdxA family.


ensembl_gene_id: VDG1235_1088
symbol: EDY81470.1
gene_biotype: protein_coding
description:
  Molybdopterin oxidoreductase Fe4S4 domain family; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: VDG1235_1097
symbol: EDY81479.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: VDG1235_1098
symbol: EDY81480.1
gene_biotype: protein_coding
description:
  YeeE/YedE family protein; [R] COG2391 Predicted transporter component; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_110
symbol: EDY80496.1
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: VDG1235_1100
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: VDG1235_1107
symbol: EDY81489.1
gene_biotype: protein_coding
description:
  Oxidoreductase family, NAD-binding Rossmann fold protein; [R] COG0673 Predicted dehydrogenases and related proteins.


ensembl_gene_id: VDG1235_1109
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6, putative; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: VDG1235_111
symbol: EDY80497.1
gene_biotype: protein_coding
description:
  C-terminal processing peptidase subfamily, putative; [M] COG0793 Periplasmic protease; Belongs to the peptidase S41A family.


ensembl_gene_id: VDG1235_1110
symbol: EDY81492.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [P] COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA.


ensembl_gene_id: VDG1235_1113
symbol: EDY81495.1
gene_biotype: protein_coding
description:
  Hydrolase, alpha/beta fold family, putative; [R] COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold.


ensembl_gene_id: VDG1235_1114
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.


ensembl_gene_id: VDG1235_1115
symbol: EDY81497.1
gene_biotype: protein_coding
description:
  Amidohydrolase family, putative; [FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases.


ensembl_gene_id: VDG1235_1119
symbol: EDY81501.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 26; [G] COG4124 Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.


ensembl_gene_id: VDG1235_1121
symbol: EDY81503.1
gene_biotype: protein_coding
description:
  FG-GAP repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_1124
symbol: EDY81506.1
gene_biotype: protein_coding
description:
  [G] COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.


ensembl_gene_id: VDG1235_1125
symbol: EDY81507.1
gene_biotype: protein_coding
description:
  Bacterial type II and III secretion system protein; [NU] COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.


ensembl_gene_id: VDG1235_1126
symbol: EDY81508.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein, putative; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: VDG1235_113
symbol: EDY80499.1
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: VDG1235_1130
symbol: EDY81512.1
gene_biotype: protein_coding
description:
  [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: VDG1235_1131
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: VDG1235_1134
symbol: EDY81516.1
gene_biotype: protein_coding
description:
  Heavy metal efflux pump, CzcA family; [P] COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: VDG1235_1139
symbol: EDY81521.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG4585 Signal transduction histidine kinase.


ensembl_gene_id: VDG1235_1142
symbol: EDY81524.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: VDG1235_115
symbol: EDY80501.1
gene_biotype: protein_coding
description:
  Allophanate hydrolase; [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.


ensembl_gene_id: VDG1235_1151
symbol: EDY81533.1
gene_biotype: protein_coding
description:
  Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.


ensembl_gene_id: VDG1235_1152
symbol: EDY81534.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: VDG1235_1157
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: VDG1235_1160
symbol: EDY81542.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase, family 43; [G] COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: VDG1235_1162
symbol: EDY81544.1
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: VDG1235_1163
symbol: EDY81545.1
gene_biotype: protein_coding
description:
  ThiF family protein; [H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1.


ensembl_gene_id: VDG1235_1165
symbol: EDY81547.1
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit subfamily; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: VDG1235_1166
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.


ensembl_gene_id: VDG1235_1167
symbol: EDY81549.1
gene_biotype: protein_coding
description:
  LAO/AO transport system ATPase; [E] COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family.


ensembl_gene_id: VDG1235_1169
symbol: EDY81551.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family protein; [L] COG0582 Integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: VDG1235_1170
symbol: EDY81552.1
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: VDG1235_1173
symbol: EDY81555.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [U] COG0823 Periplasmic component of the Tol biopolymer transport system; WD40-like Beta Propeller Repeat.


ensembl_gene_id: VDG1235_1174
symbol: EDY81556.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: VDG1235_1183
symbol: EDY81565.1
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: VDG1235_1185
symbol: EDY81567.1
gene_biotype: protein_coding
description:
  Sigma factor regulatory protein, FecR/PupR family; [PT] COG3712 Fe2+-dicitrate sensor, membrane component.


ensembl_gene_id: VDG1235_1189
symbol: EDY81571.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.


ensembl_gene_id: VDG1235_119
symbol: EDY80505.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: VDG1235_1190
symbol: EDY81572.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00147; [IR] COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase.


ensembl_gene_id: VDG1235_1192
symbol: EDY81574.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.


ensembl_gene_id: VDG1235_1199
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: VDG1235_1206
symbol: EDY81588.1
gene_biotype: protein_coding
description:
  GSPII_E N-terminal domain family; [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.


ensembl_gene_id: VDG1235_1215
symbol: EDY81597.1
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit, putative; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: VDG1235_1218
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; [F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase.


ensembl_gene_id: VDG1235_122
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: VDG1235_1234
symbol: EDY81616.1
gene_biotype: protein_coding
description:
  Integron integrase subfamily, putative; [L] COG0582 Integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: VDG1235_1236
symbol: EDY81618.1
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase superfamily, putative; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.


ensembl_gene_id: VDG1235_1242
symbol: dinB
gene_biotype: protein_coding
description:
  ImpB/MucB/SamB family; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: VDG1235_1245
symbol: EDY81627.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR01777, putative; [R] COG1090 Predicted nucleoside-diphosphate sugar epimerase.


ensembl_gene_id: VDG1235_1248
symbol: EDY81630.1
gene_biotype: protein_coding
description:
  Transporter, DAACS family; [C] COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: VDG1235_1260
symbol: EDY81642.1
gene_biotype: protein_coding
description:
  Transporter, MotA/TolQ/ExbB proton channel family, putative; [U] COG0811 Biopolymer transport proteins.


ensembl_gene_id: VDG1235_1261
symbol: EDY81643.1
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: VDG1235_1264
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: VDG1235_1268
symbol: EDY81650.1
gene_biotype: protein_coding
description:
  Nitrogenase MoFe cofactor biosynthesis protein NifE; [C] COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: VDG1235_1269
symbol: EDY81651.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.


ensembl_gene_id: VDG1235_1277
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: VDG1235_1279
symbol: EDY81661.1
gene_biotype: protein_coding
description:
  OmpA family protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.


ensembl_gene_id: VDG1235_1286
symbol: EDY81668.1
gene_biotype: protein_coding
description:
  [M] COG0810 Periplasmic protein TonB, links inner and outer membranes; TonB family C-terminal domain.


ensembl_gene_id: VDG1235_1296
symbol: EDY81678.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: VDG1235_1298
symbol: EDY81680.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Chlamydial polymorphic outer membrane protein repeat.


ensembl_gene_id: VDG1235_1304
symbol: EDY81686.1
gene_biotype: protein_coding
description:
  Toxic anion resistance protein (TelA); [P] COG3853 Uncharacterized protein involved in tellurite resistance.


ensembl_gene_id: VDG1235_1306
symbol: EDY81688.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: VDG1235_131
symbol: EDY80517.1
gene_biotype: protein_coding
description:
  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.


ensembl_gene_id: VDG1235_1312
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: VDG1235_1318
symbol: EDY81700.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein, putative; [G] COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: VDG1235_1325
symbol: EDY81707.1
gene_biotype: protein_coding
description:
  Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase subfamily; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.


ensembl_gene_id: VDG1235_1326
symbol: EDY81708.1
gene_biotype: protein_coding
description:
  Integral membrane protein DUF6; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: VDG1235_1342
symbol: EDY81724.1
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: VDG1235_1345
symbol: EDY81727.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolases family 2, sugar binding domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: VDG1235_1346
symbol: EDY81728.1
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: VDG1235_1351
symbol: EDY81733.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00044; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: VDG1235_1353
symbol: EDY81735.1
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase superfamily protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.


ensembl_gene_id: VDG1235_136
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: VDG1235_1367
symbol: EDY81749.1
gene_biotype: protein_coding
description:
  Competence/damage-inducible protein CinA N-terminal domain, putative; [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.


ensembl_gene_id: VDG1235_1369
symbol: EDY81751.1
gene_biotype: protein_coding
description:
  Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.


ensembl_gene_id: VDG1235_1370
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: VDG1235_1372
symbol: EDY81754.1
gene_biotype: protein_coding
description:
  TrwC relaxase family; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.


ensembl_gene_id: VDG1235_1377
symbol: EDY81759.1
gene_biotype: protein_coding
description:
  Toluene tolerance protein Ttg2D; [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.


ensembl_gene_id: VDG1235_1379
symbol: EDY81761.1
gene_biotype: protein_coding
description:
  FG-GAP repeat domain protein; [R] COG3979 Uncharacterized protein contain chitin-binding domain type 3.


ensembl_gene_id: VDG1235_138
symbol: EDY80524.1
gene_biotype: protein_coding
description:
  Rnf-Nqr subunit, membrane protein; [C] COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA.


ensembl_gene_id: VDG1235_1383
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: VDG1235_1384
symbol: EDY81766.1
gene_biotype: protein_coding
description:
  [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: VDG1235_1389
symbol: EDY81771.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [C] COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: VDG1235_1391
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: VDG1235_1392
symbol: EDY81774.1
gene_biotype: protein_coding
description:
  Aminotransferase, classes I and II superfamily; [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.


ensembl_gene_id: VDG1235_1395
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: VDG1235_1399
symbol: EDY81781.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.


ensembl_gene_id: VDG1235_14
symbol: EDY80404.1
gene_biotype: protein_coding
description:
  Transporter, SSS family, putative; [R] COG4146 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: VDG1235_1400
symbol: kdsA
gene_biotype: protein_coding
description:
  [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; Belongs to the KdsA family.


ensembl_gene_id: VDG1235_1401
symbol: EDY81783.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulphide oxidoreductase domain protein; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.


ensembl_gene_id: VDG1235_1406
symbol: EDY81788.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: VDG1235_1407
symbol: EDY81789.1
gene_biotype: protein_coding
description:
  tRNA synthetases class I (E and Q), catalytic domain, putative; [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: VDG1235_1409
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: VDG1235_1412
symbol: EDY81794.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_1416
symbol: EDY81798.1
gene_biotype: protein_coding
description:
  Amino-acid N-acetyltransferase; [E] COG0548 Acetylglutamate kinase; Belongs to the acetyltransferase family.


ensembl_gene_id: VDG1235_1421
symbol: EDY81803.1
gene_biotype: protein_coding
description:
  DegT/DnrJ/EryC1/StrS aminotransferase family; [R] COG0319 Predicted metal-dependent hydrolase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: VDG1235_1423
symbol: EDY81805.1
gene_biotype: protein_coding
description:
  PDZ domain protein; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.


ensembl_gene_id: VDG1235_1428
symbol: EDY81810.1
gene_biotype: protein_coding
description:
  Sigma-54 interaction domain family; [KT] COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains.


ensembl_gene_id: VDG1235_1429
symbol: EDY81811.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas5, Dvulg subtype; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_143
symbol: rnfD
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, D subunit subfamily; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.


ensembl_gene_id: VDG1235_144
symbol: EDY80530.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [GM] COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.


ensembl_gene_id: VDG1235_1440
symbol: EDY81821.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.


ensembl_gene_id: VDG1235_1441
symbol: EDY81822.1
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein, family 5; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component.


ensembl_gene_id: VDG1235_1444
symbol: tatA
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase, TatA/E family, putative; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: VDG1235_1446
symbol: EDY81827.1
gene_biotype: protein_coding
description:
  Cellulase (glycosyl hydrolase family 5); [G] COG2730 Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: VDG1235_1450
symbol: EDY81831.1
gene_biotype: protein_coding
description:
  Cation efflux family protein; [P] COG0053 Predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: VDG1235_1455
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: VDG1235_1468
symbol: EDY81848.1
gene_biotype: protein_coding
description:
  Type III restriction enzyme, res subunit family; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.


ensembl_gene_id: VDG1235_1469
symbol: EDY81849.1
gene_biotype: protein_coding
description:
  Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain protein; [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.


ensembl_gene_id: VDG1235_1473
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: VDG1235_1479
symbol: EDY81859.1
gene_biotype: protein_coding
description:
  2Fe-2S iron-sulfur cluster binding domain protein; [C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G).


ensembl_gene_id: VDG1235_148
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: VDG1235_1480
symbol: EDY81860.1
gene_biotype: protein_coding
description:
  Bacterial type II and III secretion system protein; [NU] COG1450 Type II secretory pathway, component PulD.


ensembl_gene_id: VDG1235_1484
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: VDG1235_149
symbol: EDY80535.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: VDG1235_1491
symbol: EDY81871.1
gene_biotype: protein_coding
description:
  DegT/DnrJ/EryC1/StrS aminotransferase family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: VDG1235_1494
symbol: EDY81874.1
gene_biotype: protein_coding
description:
  Heparinase II/III-like protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_1495
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: VDG1235_1504
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: VDG1235_1505
symbol: ispF
gene_biotype: protein_coding
description:
  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: VDG1235_1507
symbol: EDY81887.1
gene_biotype: protein_coding
description:
  Sigma-54 interaction domain family; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: VDG1235_1508
symbol: EDY81888.1
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).


ensembl_gene_id: VDG1235_1509
symbol: EDY81889.1
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: VDG1235_1516
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: VDG1235_1517
symbol: EDY81897.1
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; [M] COG0763 Lipid A disaccharide synthetase; Belongs to the LpxB family.


ensembl_gene_id: VDG1235_1521
symbol: EDY81901.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor plug domain protein; [P] COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.


ensembl_gene_id: VDG1235_1526
symbol: EDY81906.1
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase, putative; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: VDG1235_1542
symbol: EDY81922.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor domain protein; [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins.


ensembl_gene_id: VDG1235_1543
symbol: EDY81923.1
gene_biotype: protein_coding
description:
  KR domain superfamily; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: VDG1235_1545
symbol: rho
gene_biotype: protein_coding
description:
  ATP synthase alpha/beta family, nucleotide-binding domain protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: VDG1235_1546
symbol: EDY81926.1
gene_biotype: protein_coding
description:
  Tat pathway signal sequence domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_1550
symbol: EDY81930.1
gene_biotype: protein_coding
description:
  Aminotransferase, class III superfamily; [H] COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: VDG1235_1564
symbol: EDY81944.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR02436; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_157
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: VDG1235_1572
symbol: EDY81952.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation.


ensembl_gene_id: VDG1235_1573
symbol: EDY81953.1
gene_biotype: protein_coding
description:
  LysR substrate binding domain protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: VDG1235_158
symbol: EDY80544.1
gene_biotype: protein_coding
description:
  Virulence factor MVIN superfamily; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.


ensembl_gene_id: VDG1235_1584
symbol: EDY81964.1
gene_biotype: protein_coding
description:
  [H] COG0407 Uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.


ensembl_gene_id: VDG1235_1585
symbol: EDY81965.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: VDG1235_1587
symbol: EDY81967.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein; [O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.


ensembl_gene_id: VDG1235_159
symbol: EDY80545.1
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase subfamily, putative; [G] COG4284 UDP-glucose pyrophosphorylase.


ensembl_gene_id: VDG1235_1592
symbol: EDY81972.1
gene_biotype: protein_coding
description:
  Class I glutamine amidotransferase, putative; [F] COG0518 GMP synthase - Glutamine amidotransferase domain.


ensembl_gene_id: VDG1235_1593
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: VDG1235_1594
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: VDG1235_1595
symbol: EDY81975.1
gene_biotype: protein_coding
description:
  Complex I intermediate-associated protein 30; [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases.


ensembl_gene_id: VDG1235_1600
symbol: EDY81980.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: VDG1235_1605
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: VDG1235_1607
symbol: EDY81987.1
gene_biotype: protein_coding
description:
  RND transporter, HAE1/HME family, permease protein; [P] COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: VDG1235_1611
symbol: EDY81991.1
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family; [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.


ensembl_gene_id: VDG1235_1619
symbol: EDY81999.1
gene_biotype: protein_coding
description:
  DNA-binding protein HU; [L] COG0776 Bacterial nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: VDG1235_1620
symbol: nnrD
gene_biotype: protein_coding
description:
  Carbohydrate kinase family; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.


ensembl_gene_id: VDG1235_1624
symbol: EDY82004.1
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: VDG1235_1626
symbol: EDY82006.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; [G] COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: VDG1235_1627
symbol: EDY82007.1
gene_biotype: protein_coding
description:
  Hydrolase, alpha/beta fold family, putative; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: VDG1235_1628
symbol: argD
gene_biotype: protein_coding
description:
  Acetylornithine and succinylornithine aminotransferases subfamily; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: VDG1235_163
symbol: rnfB
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, B subunit subfamily; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: VDG1235_1631
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: VDG1235_1639
symbol: EDY82019.1
gene_biotype: protein_coding
description:
  Haloacid dehalogenase-like hydrolase, putative; [R] COG0561 Predicted hydrolases of the HAD superfamily.


ensembl_gene_id: VDG1235_1640
symbol: nifH
gene_biotype: protein_coding
description:
  Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: VDG1235_1642
symbol: EDY82022.1
gene_biotype: protein_coding
description:
  Sigma-70, region 4 family; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: VDG1235_1646
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: VDG1235_165
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: VDG1235_1652
symbol: EDY82032.1
gene_biotype: protein_coding
description:
  Type I phosphodiesterase / nucleotide pyrophosphatase superfamily; [R] COG1524 Uncharacterized proteins of the AP superfamily.


ensembl_gene_id: VDG1235_1655
symbol: EDY82035.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.


ensembl_gene_id: VDG1235_166
symbol: EDY80552.1
gene_biotype: protein_coding
description:
  Trypsin domain protein; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.


ensembl_gene_id: VDG1235_1673
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: VDG1235_1674
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: VDG1235_1676
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.


ensembl_gene_id: VDG1235_1679
symbol: recA
gene_biotype: protein_coding
description:
  Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: VDG1235_168
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: VDG1235_1681
symbol: EDY82061.1
gene_biotype: protein_coding
description:
  Dehydratase family; [EG] COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: VDG1235_1682
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: VDG1235_1684
symbol: EDY82064.1
gene_biotype: protein_coding
description:
  AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.


ensembl_gene_id: VDG1235_1685
symbol: engB
gene_biotype: protein_coding
description:
  GTPase, putative; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: VDG1235_169
symbol: EDY80555.1
gene_biotype: protein_coding
description:
  TonB family C-terminal domain protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.


ensembl_gene_id: VDG1235_1692
symbol: EDY82072.1
gene_biotype: protein_coding
description:
  Probable molybdopterin binding domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: VDG1235_1694
symbol: EDY82074.1
gene_biotype: protein_coding
description:
  GDSL-like lipase/acylhydrolase domain protein; [E] COG2755 Lysophospholipase L1 and related esterases.


ensembl_gene_id: VDG1235_1697
symbol: EDY82077.1
gene_biotype: protein_coding
description:
  Ribbon-helix-helix protein, copG family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_1704
symbol: EDY82084.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein, Csd2 family; [P] COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain.


ensembl_gene_id: VDG1235_1708
symbol: EDY82088.1
gene_biotype: protein_coding
description:
  Hydrolase, NUDIX family, putative; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.


ensembl_gene_id: VDG1235_171
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: VDG1235_1722
symbol: EDY82102.1
gene_biotype: protein_coding
description:
  Class I glutamine amidotransferase, putative; [EH] COG0512 Anthranilate/para-aminobenzoate synthases component II.


ensembl_gene_id: VDG1235_173
symbol: EDY80559.1
gene_biotype: protein_coding
description:
  Putative PEP-CTERM system response regulator; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: VDG1235_1733
symbol: EDY82113.1
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: VDG1235_1735
symbol: EDY82115.1
gene_biotype: protein_coding
description:
  [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family.


ensembl_gene_id: VDG1235_1739
symbol: EDY82119.1
gene_biotype: protein_coding
description:
  Urease, gamma subunit; [E] COG0831 Urea amidohydrolase (urease) gamma subunit; Belongs to the urease gamma subunit family.


ensembl_gene_id: VDG1235_1750
symbol: EDY82130.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 65 central catalytic domain; [G] COG1554 Trehalose and maltose hydrolases (possible phosphorylases).


ensembl_gene_id: VDG1235_1751
symbol: EDY82131.1
gene_biotype: protein_coding
description:
  Bacterial signalling N terminal domain repeat protein; [T] COG0642 Signal transduction histidine kinase.


ensembl_gene_id: VDG1235_1754
symbol: EDY82134.1
gene_biotype: protein_coding
description:
  Oxidoreductase, nitrogenase component 1 and other families superfamily; [C] COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: VDG1235_1755
symbol: EDY82135.1
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].


ensembl_gene_id: VDG1235_1758
symbol: menG
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferases subfamily; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).


ensembl_gene_id: VDG1235_1764
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: VDG1235_177
symbol: EDY80563.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR01777; [R] COG1090 Predicted nucleoside-diphosphate sugar epimerase.


ensembl_gene_id: VDG1235_1770
symbol: EDY82150.1
gene_biotype: protein_coding
description:
  precorrin-3B synthase; [P] COG0155 Sulfite reductase, beta subunit (hemoprotein); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: VDG1235_1778
symbol: EDY82158.1
gene_biotype: protein_coding
description:
  Conserved domain protein; [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ).


ensembl_gene_id: VDG1235_1780
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: VDG1235_1782
symbol: EDY82162.1
gene_biotype: protein_coding
description:
  [L] COG2963 Transposase and inactivated derivatives; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_1783
symbol: EDY82163.1
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: VDG1235_1786
symbol: EDY82166.1
gene_biotype: protein_coding
description:
  [S] COG2995 Uncharacterized paraquat-inducible protein A; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_1789
symbol: pyrB
gene_biotype: protein_coding
description:
  [F] COG0540 Aspartate carbamoyltransferase, catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: VDG1235_1792
symbol: EDY82172.1
gene_biotype: protein_coding
description:
  8-oxoguanine DNA glycosylase, N-terminal domain family; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.


ensembl_gene_id: VDG1235_1795
symbol: EDY82175.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family; [J] COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: VDG1235_1796
symbol: EDY82176.1
gene_biotype: protein_coding
description:
  Auxiliary transport protein, MFP family, putative; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: VDG1235_1805
symbol: cheD
gene_biotype: protein_coding
description:
  CheD family; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: VDG1235_1814
symbol: prmC
gene_biotype: protein_coding
description:
  Methyltransferase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: VDG1235_1817
symbol: EDY82197.1
gene_biotype: protein_coding
description:
  Divergent AAA domain family; [K] COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen.


ensembl_gene_id: VDG1235_1818
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L superfamily; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: VDG1235_1820
symbol: EDY82200.1
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase family; [M] COG3306 Glycosyltransferase involved in LPS biosynthesis; Belongs to the uroporphyrinogen decarboxylase family.


ensembl_gene_id: VDG1235_1821
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: VDG1235_1829
symbol: EDY82209.1
gene_biotype: protein_coding
description:
  Aminotransferase, class V superfamily; [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.


ensembl_gene_id: VDG1235_1831
symbol: EDY82211.1
gene_biotype: protein_coding
description:
  7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, putative; [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.


ensembl_gene_id: VDG1235_1839
symbol: EDY82219.1
gene_biotype: protein_coding
description:
  Putative bacterial transglutaminase domain family protein; [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases.


ensembl_gene_id: VDG1235_1844
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit subfamily; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: VDG1235_1851
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: VDG1235_1855
symbol: EDY82235.1
gene_biotype: protein_coding
description:
  DNA mismatch endonuclease Vsr family; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.


ensembl_gene_id: VDG1235_1858
symbol: EDY82238.1
gene_biotype: protein_coding
description:
  Efflux transporter, outer membrane factor lipoprotein, NodT family; [MU] COG1538 Outer membrane protein.


ensembl_gene_id: VDG1235_1860
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: VDG1235_1866
symbol: EDY82246.1
gene_biotype: protein_coding
description:
  Animal haem peroxidase superfamily; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_1867
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: VDG1235_1872
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase superfamily; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: VDG1235_1879
symbol: EDY82259.1
gene_biotype: protein_coding
description:
  RND transporter, HAE1/HME family, permease protein; [V] COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: VDG1235_1884
symbol: EDY82264.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).


ensembl_gene_id: VDG1235_1888
symbol: hppA
gene_biotype: protein_coding
description:
  V-type H(+)-translocating pyrophosphatase; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.


ensembl_gene_id: VDG1235_1889
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal L5P family C-terminal domain protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: VDG1235_1892
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: VDG1235_1895
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: VDG1235_1899
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: VDG1235_19
symbol: EDY80409.1
gene_biotype: protein_coding
description:
  Rhodanese-like domain protein; [R] COG1054 Predicted sulfurtransferase; Belongs to the UPF0176 family.


ensembl_gene_id: VDG1235_1905
symbol: EDY82285.1
gene_biotype: protein_coding
description:
  Nucleotidyl transferase family; [G] COG0448 ADP-glucose pyrophosphorylase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: VDG1235_1909
symbol: EDY82289.1
gene_biotype: protein_coding
description:
  Ornithine cyclodeaminase/mu-crystallin family; [E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.


ensembl_gene_id: VDG1235_1913
symbol: EDY82293.1
gene_biotype: protein_coding
description:
  Inositol monophosphatase family; [G] COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family.


ensembl_gene_id: VDG1235_1916
symbol: EDY82296.1
gene_biotype: protein_coding
description:
  Bacterial Peptidase A24 N-terminal domain family; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.


ensembl_gene_id: VDG1235_1919
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase subfamily; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.


ensembl_gene_id: VDG1235_1926
symbol: hprK
gene_biotype: protein_coding
description:
  HPr(Ser) kinase/phosphatase, putative; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).


ensembl_gene_id: VDG1235_1940
symbol: EDY82320.1
gene_biotype: protein_coding
description:
  [R] COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_1948
symbol: EDY82328.1
gene_biotype: protein_coding
description:
  O-succinylbenzoic acid synthetase; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.


ensembl_gene_id: VDG1235_1954
symbol: EDY82334.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: VDG1235_1959
symbol: EDY82338.1
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase, family 4, putative; [P] COG1135 ABC-type metal ion transport system, ATPase component.


ensembl_gene_id: VDG1235_1964
symbol: EDY82343.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [N] COG3225 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.


ensembl_gene_id: VDG1235_1968
symbol: obg
gene_biotype: protein_coding
description:
  GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: VDG1235_1971
symbol: fcl
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.


ensembl_gene_id: VDG1235_1973
symbol: lysS
gene_biotype: protein_coding
description:
  [J] COG1190 Lysyl-tRNA synthetase (class II); Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: VDG1235_1976
symbol: ureF
gene_biotype: protein_coding
description:
  UreF, putative; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: VDG1235_1977
symbol: EDY82356.1
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein, putative; [G] COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: VDG1235_198
symbol: ddl
gene_biotype: protein_coding
description:
  D-ala D-ala ligase N-terminal domain protein, putative; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: VDG1235_1987
symbol: EDY82366.1
gene_biotype: protein_coding
description:
  Glycogen/starch/alpha-glucan phosphorylases subfamily; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: VDG1235_1989
symbol: EDY82368.1
gene_biotype: protein_coding
description:
  Class II glutamine amidotransferase domain protein; [F] COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase.


ensembl_gene_id: VDG1235_1993
symbol: EDY82372.1
gene_biotype: protein_coding
description:
  DbpA RNA binding domain family; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.


ensembl_gene_id: VDG1235_2004
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: VDG1235_2005
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: VDG1235_2012
symbol: EDY82390.1
gene_biotype: protein_coding
description:
  Rrf2 family protein (putative transcriptional regulator); [K] COG1959 Predicted transcriptional regulator.


ensembl_gene_id: VDG1235_2013
symbol: EDY82391.1
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; [I] COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: VDG1235_2015
symbol: EDY82393.1
gene_biotype: protein_coding
description:
  FtsK/SpoIIIE family, putative; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; Belongs to the FtsK/SpoIIIE/SftA family.


ensembl_gene_id: VDG1235_2018
symbol: EDY82396.1
gene_biotype: protein_coding
description:
  FGGY family of carbohydrate kinase, N-terminal domain protein; [G] COG1070 Sugar (pentulose and hexulose) kinases.


ensembl_gene_id: VDG1235_202
symbol: EDY80588.1
gene_biotype: protein_coding
description:
  SWIB/MDM2 domain superfamily; [B] COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling.


ensembl_gene_id: VDG1235_2023
symbol: EDY82401.1
gene_biotype: protein_coding
description:
  RimK-like ATP-grasp domain family; [HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase).


ensembl_gene_id: VDG1235_203
symbol: menA
gene_biotype: protein_coding
description:
  1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.


ensembl_gene_id: VDG1235_2030
symbol: EDY82408.1
gene_biotype: protein_coding
description:
  TonB-dependent siderophore receptor subfamily; [P] COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.


ensembl_gene_id: VDG1235_2032
symbol: EDY82410.1
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase; [J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: VDG1235_2034
symbol: EDY82412.1
gene_biotype: protein_coding
description:
  Na+/H+ antiporter 1 superfamily; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons.


ensembl_gene_id: VDG1235_2042
symbol: EDY82420.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [G] COG1879 ABC-type sugar transport system, periplasmic component; Periplasmic binding proteins and sugar binding domain of the LacI family, putative.


ensembl_gene_id: VDG1235_2046
symbol: EDY82424.1
gene_biotype: protein_coding
description:
  Ferritin-like domain subfamily; [P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.


ensembl_gene_id: VDG1235_2048
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: VDG1235_2060
symbol: EDY82438.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: VDG1235_2068
symbol: EDY82446.1
gene_biotype: protein_coding
description:
  NOL1/NOP2/sun family protein; [J] COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: VDG1235_2069
symbol: EDY82447.1
gene_biotype: protein_coding
description:
  Integrase core domain protein; [L] COG2801 Transposase and inactivated derivatives; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_2070
symbol: argJ
gene_biotype: protein_coding
description:
  Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: VDG1235_2071
symbol: EDY82449.1
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family; [H] COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase.


ensembl_gene_id: VDG1235_2072
symbol: EDY82450.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD C-terminal domain protein; [H] COG0262 Dihydrofolate reductase.


ensembl_gene_id: VDG1235_2075
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: VDG1235_2080
symbol: EDY82458.1
gene_biotype: protein_coding
description:
  [L] COG0587 DNA polymerase III, alpha subunit; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.


ensembl_gene_id: VDG1235_2085
symbol: purC
gene_biotype: protein_coding
description:
  [F] COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; Belongs to the SAICAR synthetase family.


ensembl_gene_id: VDG1235_2091
symbol: EDY82469.1
gene_biotype: protein_coding
description:
  Homocysteine S-methyltransferase, putative; [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.


ensembl_gene_id: VDG1235_21
symbol: EDY80411.1
gene_biotype: protein_coding
description:
  Putative addiction module antidote protein, CC2985 family; [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.


ensembl_gene_id: VDG1235_2100
symbol: csrA
gene_biotype: protein_coding
description:
  Global regulator protein family, putative; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.


ensembl_gene_id: VDG1235_2104
symbol: EDY82481.1
gene_biotype: protein_coding
description:
  Transglutaminase-like superfamily protein; [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases.


ensembl_gene_id: VDG1235_2106
symbol: EDY82483.1
gene_biotype: protein_coding
description:
  Peptidase family M20/M25/M40; [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: VDG1235_2108
symbol: EDY82485.1
gene_biotype: protein_coding
description:
  Type III restriction enzyme, res subunit family; [KL] COG1061 DNA or RNA helicases of superfamily II.


ensembl_gene_id: VDG1235_2117
symbol: EDY82494.1
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, sulfate-binding protein; [P] COG1613 ABC-type sulfate transport system, periplasmic component.


ensembl_gene_id: VDG1235_2121
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase subfamily; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: VDG1235_2124
symbol: EDY82501.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 1; [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase.


ensembl_gene_id: VDG1235_2125
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: VDG1235_213
symbol: EDY80599.1
gene_biotype: protein_coding
description:
  Cell cycle protein, FtsW/RodA/SpoVE family; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.


ensembl_gene_id: VDG1235_2133
symbol: EDY82510.1
gene_biotype: protein_coding
description:
  [M] COG2335 Secreted and surface protein containing fasciclin-like repeats; fasciclin domain, putative.


ensembl_gene_id: VDG1235_2139
symbol: EDY82516.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: VDG1235_2144
symbol: EDY82521.1
gene_biotype: protein_coding
description:
  AICARFT/IMPCHase bienzyme family; [F] COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); Belongs to the PurH family.


ensembl_gene_id: VDG1235_2150
symbol: EDY82527.1
gene_biotype: protein_coding
description:
  Agmatinase; [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.


ensembl_gene_id: VDG1235_216
symbol: EDY80602.1
gene_biotype: protein_coding
description:
  Peptidase, S54 (rhomboid) family, putative; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).


ensembl_gene_id: VDG1235_2164
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: VDG1235_2165
symbol: EDY82542.1
gene_biotype: protein_coding
description:
  [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; Flavin reductase like domain, putative.


ensembl_gene_id: VDG1235_2183
symbol: EDY82560.1
gene_biotype: protein_coding
description:
  Cytochrome C assembly protein; [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component.


ensembl_gene_id: VDG1235_2186
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase catalytic core, N-terminal domain family; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family.


ensembl_gene_id: VDG1235_2192
symbol: EDY82569.1
gene_biotype: protein_coding
description:
  Bacterial flagellin N-terminus domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: VDG1235_2193
symbol: EDY82570.1
gene_biotype: protein_coding
description:
  Conserved domain protein, putative; [S] COG0393 Uncharacterized conserved protein; Belongs to the UPF0145 family.


ensembl_gene_id: VDG1235_2198
symbol: EDY82575.1
gene_biotype: protein_coding
description:
  [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; cyclic nucleotide-binding domain, putative.


ensembl_gene_id: VDG1235_22
symbol: EDY80412.1
gene_biotype: protein_coding
description:
  DJ-1/PfpI family; [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.


ensembl_gene_id: VDG1235_2204
symbol: EDY82581.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: VDG1235_2206
symbol: EDY82583.1
gene_biotype: protein_coding
description:
  Clp amino terminal domain protein; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.


ensembl_gene_id: VDG1235_2221
symbol: EDY82598.1
gene_biotype: protein_coding
description:
  FabA-like domain protein; [I] COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases.


ensembl_gene_id: VDG1235_2223
symbol: EDY82600.1
gene_biotype: protein_coding
description:
  Conserved domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: VDG1235_2226
symbol: EDY82603.1
gene_biotype: protein_coding
description:
  Alkaline phosphatase family protein, putative; [P] COG1785 Alkaline phosphatase; Belongs to the alkaline phosphatase family.


ensembl_gene_id: VDG1235_2227
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: VDG1235_223
symbol: EDY80609.1
gene_biotype: protein_coding
description:
  TonB family C-terminal domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2234
symbol: EDY82611.1
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein, family 7; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.


ensembl_gene_id: VDG1235_2236
symbol: EDY82613.1
gene_biotype: protein_coding
description:
  Sulfotransferase domain superfamily; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2239
symbol: EDY82616.1
gene_biotype: protein_coding
description:
  N-acylglucosamine 2-epimerase superfamily; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).


ensembl_gene_id: VDG1235_224
symbol: EDY80610.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family, putative; [K] COG2771 DNA-binding HTH domain-containing proteins.


ensembl_gene_id: VDG1235_2240
symbol: EDY82617.1
gene_biotype: protein_coding
description:
  Peptidase, M61 (glycyl aminopeptidase) family protein; [R] COG3975 Predicted protease with the C-terminal PDZ domain.


ensembl_gene_id: VDG1235_2241
symbol: EDY82618.1
gene_biotype: protein_coding
description:
  Histidine kinase family; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.


ensembl_gene_id: VDG1235_2245
symbol: EDY82622.1
gene_biotype: protein_coding
description:
  Bacterial transcription activator, effector binding domain protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins.


ensembl_gene_id: VDG1235_2248
symbol: EDY82625.1
gene_biotype: protein_coding
description:
  HicB family; [S] COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters.


ensembl_gene_id: VDG1235_2249
symbol: EDY82626.1
gene_biotype: protein_coding
description:
  Bacterial type II secretion system protein F domain; [NU] COG1459 Type II secretory pathway, component PulF.


ensembl_gene_id: VDG1235_2257
symbol: EDY82634.1
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase, putative; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.


ensembl_gene_id: VDG1235_2259
symbol: EDY82636.1
gene_biotype: protein_coding
description:
  Formamidopyrimidine-DNA glycosylase H2TH domain family; [L] COG0266 Formamidopyrimidine-DNA glycosylase.


ensembl_gene_id: VDG1235_2262
symbol: EDY82639.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; [Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component.


ensembl_gene_id: VDG1235_2263
symbol: EDY82640.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulphide oxidoreductase domain protein; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: VDG1235_2266
symbol: EDY82643.1
gene_biotype: protein_coding
description:
  Renal dipeptidase superfamily; [E] COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog.


ensembl_gene_id: VDG1235_2268
symbol: EDY82645.1
gene_biotype: protein_coding
description:
  Amidase, putative; [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.


ensembl_gene_id: VDG1235_2273
symbol: EDY82650.1
gene_biotype: protein_coding
description:
  [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: VDG1235_2274
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: VDG1235_2280
symbol: glyQS
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: VDG1235_2282
symbol: EDY82659.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: VDG1235_2286
symbol: EDY82663.1
gene_biotype: protein_coding
description:
  (2Fe-2S) binding domain protein; [F] COG4630 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A.


ensembl_gene_id: VDG1235_2294
symbol: hemF
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: VDG1235_2298
symbol: EDY82675.1
gene_biotype: protein_coding
description:
  Conserved hypothetical integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: VDG1235_2308
symbol: EDY82685.1
gene_biotype: protein_coding
description:
  Outer membrane protein, OMP85 family, putative; [M] COG4775 Outer membrane protein/protective antigen OMA87.


ensembl_gene_id: VDG1235_2309
symbol: EDY82686.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [G] COG1129 ABC-type sugar transport system, ATPase component.


ensembl_gene_id: VDG1235_2316
symbol: EDY82693.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.


ensembl_gene_id: VDG1235_2318
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: VDG1235_2322
symbol: EDY82699.1
gene_biotype: protein_coding
description:
  (2Fe-2S) binding domain protein; [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.


ensembl_gene_id: VDG1235_2324
symbol: EDY82701.1
gene_biotype: protein_coding
description:
  Thioredoxin; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.


ensembl_gene_id: VDG1235_2340
symbol: EDY82717.1
gene_biotype: protein_coding
description:
  5'-nucleotidase, C-terminal domain protein; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases.


ensembl_gene_id: VDG1235_2354
symbol: EDY82731.1
gene_biotype: protein_coding
description:
  TRAP transporter solute receptor, DctP family; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.


ensembl_gene_id: VDG1235_236
symbol: EDY80620.1
gene_biotype: protein_coding
description:
  Cellulase (glycosyl hydrolase family 5), putative; [G] COG2730 Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: VDG1235_2367
symbol: EDY82744.1
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.


ensembl_gene_id: VDG1235_2368
symbol: kbl
gene_biotype: protein_coding
description:
  2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.


ensembl_gene_id: VDG1235_2372
symbol: EDY82749.1
gene_biotype: protein_coding
description:
  Transporter, SSS family protein; [ER] COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: VDG1235_2379
symbol: EDY82756.1
gene_biotype: protein_coding
description:
  DNA repair protein RadC; [E] COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; Belongs to the UPF0758 family.


ensembl_gene_id: VDG1235_2380
symbol: EDY82757.1
gene_biotype: protein_coding
description:
  RNA-metabolising metallo-beta-lactamase family; [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.


ensembl_gene_id: VDG1235_2382
symbol: EDY82759.1
gene_biotype: protein_coding
description:
  Uncharacterized domain HDIG protein; [R] COG1480 Predicted membrane-associated HD superfamily hydrolase.


ensembl_gene_id: VDG1235_2399
symbol: larC
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00299; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family.


ensembl_gene_id: VDG1235_24
symbol: EDY80388.1
gene_biotype: protein_coding
description:
  Endoribonuclease L-PSP superfamily; [J] COG0251 Putative translation initiation inhibitor, yjgF family.


ensembl_gene_id: VDG1235_2407
symbol: EDY82784.1
gene_biotype: protein_coding
description:
  Fibronectin type III domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2408
symbol: EDY82785.1
gene_biotype: protein_coding
description:
  Cupin domain protein; [GR] COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes.


ensembl_gene_id: VDG1235_2410
symbol: EDY82787.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase, family 43; [R] COG3940 Predicted beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: VDG1235_2412
symbol: EDY82789.1
gene_biotype: protein_coding
description:
  Putative acyltransferase, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2417
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: VDG1235_2419
symbol: EDY82796.1
gene_biotype: protein_coding
description:
  Oxidoreductase alpha (molybdopterin) subunit; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: VDG1235_2421
symbol: EDY82798.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor subfamily; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.


ensembl_gene_id: VDG1235_2422
symbol: EDY82799.1
gene_biotype: protein_coding
description:
  Penicillin-binding Protein dimerisation domain family; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.


ensembl_gene_id: VDG1235_2425
symbol: EDY82802.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [V] COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.


ensembl_gene_id: VDG1235_2430
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: VDG1235_2437
symbol: EDY82814.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: VDG1235_2439
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: VDG1235_2441
symbol: EDY82818.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2459
symbol: EDY82836.1
gene_biotype: protein_coding
description:
  Carboxypeptidase Taq (M32) metallopeptidase superfamily; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.


ensembl_gene_id: VDG1235_2464
symbol: EDY82841.1
gene_biotype: protein_coding
description:
  SPFH domain / Band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.


ensembl_gene_id: VDG1235_2467
symbol: EDY82844.1
gene_biotype: protein_coding
description:
  2Fe-2S iron-sulfur cluster binding domain protein; [R] COG3894 Uncharacterized metal-binding protein.


ensembl_gene_id: VDG1235_2475
symbol: EDY82852.1
gene_biotype: protein_coding
description:
  Bacterial microcompartments protein family; [QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein.


ensembl_gene_id: VDG1235_2481
symbol: EDY82858.1
gene_biotype: protein_coding
description:
  ATP:cob(I)alamin adenosyltransferase; [S] COG2096 Uncharacterized conserved protein; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: VDG1235_2486
symbol: EDY82863.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; (2Fe-2S) binding domain, putative.


ensembl_gene_id: VDG1235_2494
symbol: EDY82871.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; [R] COG4221 Short-chain alcohol dehydrogenase of unknown specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: VDG1235_2496
symbol: EDY82873.1
gene_biotype: protein_coding
description:
  CobQ/CobB/MinD/ParA nucleotide binding domain, putative; [D] COG1192 ATPases involved in chromosome partitioning.


ensembl_gene_id: VDG1235_250
symbol: EDY80634.1
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase, type I; [G] COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: VDG1235_2507
symbol: EDY82884.1
gene_biotype: protein_coding
description:
  Hydantoinase/oxoprolinase domain family protein; [EQ] COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit.


ensembl_gene_id: VDG1235_2508
symbol: EDY82885.1
gene_biotype: protein_coding
description:
  Sugar isomerase, KpsF/GutQ family; [M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: VDG1235_2518
symbol: cheB
gene_biotype: protein_coding
description:
  Protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: VDG1235_2521
symbol: EDY82898.1
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase accessory factor, putative subfamily, putative; [O] COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.


ensembl_gene_id: VDG1235_2525
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: VDG1235_2533
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: VDG1235_2534
symbol: EDY82911.1
gene_biotype: protein_coding
description:
  [C] COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.


ensembl_gene_id: VDG1235_2535
symbol: EDY82912.1
gene_biotype: protein_coding
description:
  Transporter, cation channel family; [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component.


ensembl_gene_id: VDG1235_2539
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: VDG1235_2542
symbol: EDY82919.1
gene_biotype: protein_coding
description:
  [F] COG0015 Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: VDG1235_2543
symbol: EDY82920.1
gene_biotype: protein_coding
description:
  Aminotransferase, class IV superfamily; [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.


ensembl_gene_id: VDG1235_2548
symbol: EDY82925.1
gene_biotype: protein_coding
description:
  NAD(P) transhydrogenase beta subunit superfamily; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: VDG1235_2554
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: VDG1235_2555
symbol: EDY82932.1
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: VDG1235_2556
symbol: EDY82933.1
gene_biotype: protein_coding
description:
  [P] COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; Belongs to the cytochrome c-552 family.


ensembl_gene_id: VDG1235_256
symbol: EDY80640.1
gene_biotype: protein_coding
description:
  Helicase conserved C-terminal domain protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_2561
symbol: EDY82938.1
gene_biotype: protein_coding
description:
  Oxidoreductase, FAD/FMN-binding superfamily; [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.


ensembl_gene_id: VDG1235_2562
symbol: EDY82939.1
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase superfamily protein; [R] COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II.


ensembl_gene_id: VDG1235_2566
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: VDG1235_2567
symbol: EDY82944.1
gene_biotype: protein_coding
description:
  [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: VDG1235_2569
symbol: EDY82946.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [L] COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.


ensembl_gene_id: VDG1235_2575
symbol: EDY82952.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein, putative; [E] COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: VDG1235_258
symbol: crcB
gene_biotype: protein_coding
description:
  crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: VDG1235_2593
symbol: EDY82970.1
gene_biotype: protein_coding
description:
  Periplasmic solute binding protein family; [P] COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: VDG1235_2597
symbol: EDY82974.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.


ensembl_gene_id: VDG1235_2598
symbol: fabV
gene_biotype: protein_coding
description:
  Short-chain alcohol dehydrogenase superfamily; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.


ensembl_gene_id: VDG1235_2610
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: VDG1235_2612
symbol: EDY82989.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, alpha subunit, putative; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: VDG1235_2613
symbol: EDY82990.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [M] COG3040 Bacterial lipocalin; Lipocalin-like domain, putative; Belongs to the calycin superfamily. Lipocalin family.


ensembl_gene_id: VDG1235_2616
symbol: EDY82993.1
gene_biotype: protein_coding
description:
  Vault protein inter-alpha-trypsin; [R] COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.


ensembl_gene_id: VDG1235_2620
symbol: EDY82997.1
gene_biotype: protein_coding
description:
  Zinc-binding alcohol dehydrogenase family protein; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.


ensembl_gene_id: VDG1235_2621
symbol: EDY82998.1
gene_biotype: protein_coding
description:
  Prokaryotic N-terminal methylation motif domain protein; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.


ensembl_gene_id: VDG1235_2624
symbol: EDY83001.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase family protein; [R] COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase.


ensembl_gene_id: VDG1235_2625
symbol: EDY83002.1
gene_biotype: protein_coding
description:
  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein; [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.


ensembl_gene_id: VDG1235_2631
symbol: EDY83008.1
gene_biotype: protein_coding
description:
  [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: VDG1235_2633
symbol: thiL
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: VDG1235_2635
symbol: EDY83012.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [G] COG4213 ABC-type xylose transport system, periplasmic component; Periplasmic binding proteins and sugar binding domain of the LacI family, putative.


ensembl_gene_id: VDG1235_2640
symbol: EDY83016.1
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: VDG1235_265
symbol: EDY80649.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: VDG1235_2650
symbol: EDY83026.1
gene_biotype: protein_coding
description:
  Low molecular weight phosphotyrosine protein phosphatase; [T] COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: VDG1235_2653
symbol: EDY83029.1
gene_biotype: protein_coding
description:
  ArsC family; [P] COG1393 Arsenate reductase and related proteins, glutaredoxin family; Belongs to the ArsC family.


ensembl_gene_id: VDG1235_2654
symbol: EDY83030.1
gene_biotype: protein_coding
description:
  Methyltransferase domain family; [H] COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.


ensembl_gene_id: VDG1235_2658
symbol: EDY83034.1
gene_biotype: protein_coding
description:
  Glycosyltransferase family 28 C-terminal domain; [M] COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase.


ensembl_gene_id: VDG1235_2660
symbol: EDY83036.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III, putative; [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III.


ensembl_gene_id: VDG1235_2669
symbol: EDY83045.1
gene_biotype: protein_coding
description:
  Cupin domain protein; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.


ensembl_gene_id: VDG1235_2672
symbol: EDY83048.1
gene_biotype: protein_coding
description:
  Kinase, pfkB family; [G] COG0524 Sugar kinases, ribokinase family; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: VDG1235_2676
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: VDG1235_2678
symbol: EDY83054.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [GEPR] COG0477 Permeases of the major facilitator superfamily; selT/selW/selH selenoprotein domain, putative.


ensembl_gene_id: VDG1235_268
symbol: ybeY
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00043, putative; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: VDG1235_2686
symbol: EDY83062.1
gene_biotype: protein_coding
description:
  Peptidase M16 inactive domain family; [R] COG0612 Predicted Zn-dependent peptidases; Belongs to the peptidase M16 family.


ensembl_gene_id: VDG1235_2688
symbol: EDY83064.1
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase activating protein; [O] COG1180 Pyruvate-formate lyase-activating enzyme.


ensembl_gene_id: VDG1235_2692
symbol: EDY83068.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG5002 Signal transduction histidine kinase.


ensembl_gene_id: VDG1235_2693
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: VDG1235_2694
symbol: pfp
gene_biotype: protein_coding
description:
  Phosphofructokinase domain protein; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: VDG1235_2703
symbol: EDY83079.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.


ensembl_gene_id: VDG1235_2706
symbol: EDY83082.1
gene_biotype: protein_coding
description:
  Aminotransferase, classes I and II superfamily; [E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.


ensembl_gene_id: VDG1235_2709
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: VDG1235_2712
symbol: EDY83088.1
gene_biotype: protein_coding
description:
  Transketolase, C-terminal domain protein; [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.


ensembl_gene_id: VDG1235_2722
symbol: clpP
gene_biotype: protein_coding
description:
  Clp protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: VDG1235_2727
symbol: EDY83103.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases.


ensembl_gene_id: VDG1235_2734
symbol: nuoC
gene_biotype: protein_coding
description:
  Respiratory-chain NADH dehydrogenase, 30 Kd subunit domain protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: VDG1235_2735
symbol: EDY83111.1
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2746
symbol: nadK
gene_biotype: protein_coding
description:
  NAD(+)/NADH kinase, putative; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: VDG1235_2748
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: VDG1235_275
symbol: gpsA
gene_biotype: protein_coding
description:
  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain family protein; [C] COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: VDG1235_2752
symbol: EDY83128.1
gene_biotype: protein_coding
description:
  CRS1 / YhbY domain superfamily; [J] COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein.


ensembl_gene_id: VDG1235_276
symbol: EDY80660.1
gene_biotype: protein_coding
description:
  Carbohydrate binding domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2767
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: VDG1235_2768
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: VDG1235_2769
symbol: EDY83145.1
gene_biotype: protein_coding
description:
  BNR/Asp-box repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2778
symbol: EDY83154.1
gene_biotype: protein_coding
description:
  Superoxide dismutase (Mn/Fe family), C-terminal domain protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: VDG1235_2779
symbol: EDY83155.1
gene_biotype: protein_coding
description:
  Transporter, CPA2 family; [P] COG4651 Kef-type K+ transport system, predicted NAD-binding component.


ensembl_gene_id: VDG1235_278
symbol: EDY80662.1
gene_biotype: protein_coding
description:
  B12 binding domain protein; [G] COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family.


ensembl_gene_id: VDG1235_2788
symbol: EDY83164.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family protein; [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.


ensembl_gene_id: VDG1235_2797
symbol: EDY83173.1
gene_biotype: protein_coding
description:
  RNA-metabolising metallo-beta-lactamase family; [R] COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain.


ensembl_gene_id: VDG1235_2799
symbol: EDY83175.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: VDG1235_2806
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: VDG1235_281
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: VDG1235_2811
symbol: EDY83187.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 67 middle domain; [I] COG0511 Biotin carboxyl carrier protein; Belongs to the glycosyl hydrolase 67 family.


ensembl_gene_id: VDG1235_2812
symbol: EDY83188.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).


ensembl_gene_id: VDG1235_2813
symbol: EDY83189.1
gene_biotype: protein_coding
description:
  Oxidoreductase family, NAD-binding Rossmann fold protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: VDG1235_2818
symbol: EDY83194.1
gene_biotype: protein_coding
description:
  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: VDG1235_282
symbol: EDY80666.1
gene_biotype: protein_coding
description:
  Alpha amylase, catalytic domain subfamily, putative; [G] COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: VDG1235_283
symbol: EDY80667.1
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: VDG1235_2832
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: VDG1235_2838
symbol: EDY83214.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: VDG1235_2844
symbol: EDY83219.1
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding domain protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: VDG1235_2850
symbol: EDY83225.1
gene_biotype: protein_coding
description:
  Thioesterase family protein; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.


ensembl_gene_id: VDG1235_2851
symbol: EDY83226.1
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 2, putative; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: VDG1235_2855
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: VDG1235_2859
symbol: EDY83234.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [H] COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor synthesis domain, putative.


ensembl_gene_id: VDG1235_286
symbol: EDY80670.1
gene_biotype: protein_coding
description:
  Aminotransferase, classes I and II superfamily; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.


ensembl_gene_id: VDG1235_2863
symbol: EDY83238.1
gene_biotype: protein_coding
description:
  Psp operon transcriptional activator; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.


ensembl_gene_id: VDG1235_2865
symbol: EDY83240.1
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase subfamily; [M] COG1004 Predicted UDP-glucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: VDG1235_287
symbol: EDY80671.1
gene_biotype: protein_coding
description:
  Outer membrane efflux protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2878
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: VDG1235_2879
symbol: recF
gene_biotype: protein_coding
description:
  Hypothetical protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.


ensembl_gene_id: VDG1235_288
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: VDG1235_2880
symbol: EDY83255.1
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase subfamily; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.


ensembl_gene_id: VDG1235_2881
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: VDG1235_2882
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: VDG1235_2883
symbol: EDY83258.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.


ensembl_gene_id: VDG1235_2885
symbol: EDY83260.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferases subfamily; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: VDG1235_289
symbol: EDY80673.1
gene_biotype: protein_coding
description:
  Arsenical resistance operon trans-acting repressor ArsD superfamily; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2896
symbol: EDY83271.1
gene_biotype: protein_coding
description:
  Conserved domain protein; Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man-Glc) to mannose 1-phosphate (Man1P) and glucose; Belongs to the glycosyl hydrolase 130 family.


ensembl_gene_id: VDG1235_2900
symbol: EDY83274.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [NT] COG0643 Chemotaxis protein histidine kinase and related kinases.


ensembl_gene_id: VDG1235_2905
symbol: EDY83279.1
gene_biotype: protein_coding
description:
  [T] COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: VDG1235_2907
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: VDG1235_2908
symbol: EDY83282.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_2909
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: VDG1235_291
symbol: EDY80675.1
gene_biotype: protein_coding
description:
  Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: VDG1235_2912
symbol: EDY83286.1
gene_biotype: protein_coding
description:
  Fumarylacetoacetate hydrolase family protein; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).


ensembl_gene_id: VDG1235_2914
symbol: pnp
gene_biotype: protein_coding
description:
  3' exoribonuclease family, domain 2; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: VDG1235_2918
symbol: EDY83292.1
gene_biotype: protein_coding
description:
  DNA gyrase/topoisomerase IV, A subunit domain protein; [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit.


ensembl_gene_id: VDG1235_2923
symbol: EDY83297.1
gene_biotype: protein_coding
description:
  alpha-L-glutamate ligase, RimK family, putative; [HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.


ensembl_gene_id: VDG1235_2924
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: VDG1235_2932
symbol: EDY83306.1
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: VDG1235_2941
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: VDG1235_2962
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: VDG1235_2964
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: VDG1235_2965
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: VDG1235_2972
symbol: EDY83346.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, FKBP-type, putative; [O] COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2.


ensembl_gene_id: VDG1235_2973
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: VDG1235_2979
symbol: EDY83353.1
gene_biotype: protein_coding
description:
  Cupin superfamily; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.


ensembl_gene_id: VDG1235_2981
symbol: EDY83355.1
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: VDG1235_2989
symbol: EDY83363.1
gene_biotype: protein_coding
description:
  [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: VDG1235_299
symbol: EDY80683.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.


ensembl_gene_id: VDG1235_2991
symbol: EDY83365.1
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: VDG1235_2994
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: VDG1235_2999
symbol: EDY83373.1
gene_biotype: protein_coding
description:
  single-stranded-DNA-specific exonuclease RecJ; [L] COG0608 Single-stranded DNA-specific exonuclease.


ensembl_gene_id: VDG1235_30
symbol: EDY80416.1
gene_biotype: protein_coding
description:
  TDP-4-keto-6-deoxy-D-glucose transaminase subfamily; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: VDG1235_3006
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: VDG1235_3021
symbol: EDY83394.1
gene_biotype: protein_coding
description:
  MoeZ/MoeB domain family; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.


ensembl_gene_id: VDG1235_3027
symbol: EDY83400.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; [G] COG3250 Beta-galactosidase/beta-glucuronidase.


ensembl_gene_id: VDG1235_3029
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: VDG1235_3035
symbol: EDY83408.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: VDG1235_3038
symbol: EDY83411.1
gene_biotype: protein_coding
description:
  Type II/IV secretion system protein, putative; [NU] COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.


ensembl_gene_id: VDG1235_3045
symbol: EDY83418.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: VDG1235_3049
symbol: EDY83422.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctQ-like membrane protein; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.


ensembl_gene_id: VDG1235_3052
symbol: EDY83425.1
gene_biotype: protein_coding
description:
  Polyprenyl synthetase superfamily; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: VDG1235_3054
symbol: tilS
gene_biotype: protein_coding
description:
  Hypothetical protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: VDG1235_3059
symbol: EDY83432.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.


ensembl_gene_id: VDG1235_3061
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: VDG1235_3064
symbol: EDY83437.1
gene_biotype: protein_coding
description:
  Phosphotransferase enzyme family, putative; [R] COG2334 Putative homoserine kinase type II (protein kinase fold).


ensembl_gene_id: VDG1235_3066
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: VDG1235_3070
symbol: rnr
gene_biotype: protein_coding
description:
  VacB and RNase II family 3'-5' exoribonuclease; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: VDG1235_308
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: VDG1235_3080
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: VDG1235_3082
symbol: EDY83455.1
gene_biotype: protein_coding
description:
  SMP-30/Gluconolaconase/LRE-like region family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_3098
symbol: gpmI
gene_biotype: protein_coding
description:
  2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: VDG1235_3104
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette; Belongs to the CRISPR-associated endoribonucleas [...]


ensembl_gene_id: VDG1235_3109
symbol: EDY83482.1
gene_biotype: protein_coding
description:
  Helicase conserved C-terminal domain protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.


ensembl_gene_id: VDG1235_311
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: VDG1235_3111
symbol: EDY83484.1
gene_biotype: protein_coding
description:
  Cytochrome C assembly protein; [R] COG4137 ABC-type uncharacterized transport system, permease component.


ensembl_gene_id: VDG1235_3112
symbol: EDY83485.1
gene_biotype: protein_coding
description:
  Peptidase, M56 family protein; [KT] COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component.


ensembl_gene_id: VDG1235_3117
symbol: EDY83490.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.


ensembl_gene_id: VDG1235_3119
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: VDG1235_3124
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: VDG1235_3125
symbol: EDY83498.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [S] COG0316 Uncharacterized conserved protein; HesB-like domain, putative; Belongs to the HesB/IscA family.


ensembl_gene_id: VDG1235_3126
symbol: EDY83499.1
gene_biotype: protein_coding
description:
  Bacterial alpha-L-rhamnosidase family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_3142
symbol: EDY83515.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Fur family; [P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.


ensembl_gene_id: VDG1235_3159
symbol: EDY83532.1
gene_biotype: protein_coding
description:
  Fumarate hydratase I, N-terminal region or alpha subunit domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: VDG1235_316
symbol: EDY80700.1
gene_biotype: protein_coding
description:
  TOBE domain family; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: VDG1235_3166
symbol: EDY83539.1
gene_biotype: protein_coding
description:
  Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.


ensembl_gene_id: VDG1235_317
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: VDG1235_3172
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: VDG1235_3173
symbol: EDY83546.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.


ensembl_gene_id: VDG1235_3175
symbol: EDY83548.1
gene_biotype: protein_coding
description:
  Bacterial Cytochrome Ubiquinol Oxidase superfamily; [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1.


ensembl_gene_id: VDG1235_3177
symbol: EDY83550.1
gene_biotype: protein_coding
description:
  AMP-binding enzyme, putative; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: VDG1235_3178
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: VDG1235_3184
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: VDG1235_3188
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: VDG1235_3189
symbol: ilvD
gene_biotype: protein_coding
description:
  [EG] COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: VDG1235_319
symbol: EDY80703.1
gene_biotype: protein_coding
description:
  Methyltransferase, UbiE/COQ5 family; [H] COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.


ensembl_gene_id: VDG1235_3193
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: VDG1235_3198
symbol: EDY83571.1
gene_biotype: protein_coding
description:
  Alpha amylase, catalytic domain subfamily, putative; [G] COG0366 Glycosidases; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: VDG1235_32
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: VDG1235_320
symbol: EDY80704.1
gene_biotype: protein_coding
description:
  Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; [QC] COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein.


ensembl_gene_id: VDG1235_3200
symbol: EDY83573.1
gene_biotype: protein_coding
description:
  Transporter, SSS family, putative; [R] COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: VDG1235_3203
symbol: yidC
gene_biotype: protein_coding
description:
  60Kd inner membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: VDG1235_3209
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase family; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: VDG1235_3212
symbol: EDY83585.1
gene_biotype: protein_coding
description:
  Carbohydrate binding module (family 6); [R] COG3979 Uncharacterized protein contain chitin-binding domain type 3.


ensembl_gene_id: VDG1235_3215
symbol: EDY83588.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [F] COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; Phosphoribosyl transferase domain, putative.


ensembl_gene_id: VDG1235_322
symbol: EDY80706.1
gene_biotype: protein_coding
description:
  Cys/Met metabolism PLP-dependent enzyme superfamily; [E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.


ensembl_gene_id: VDG1235_3222
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenol kinase, putative subfamily; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: VDG1235_3223
symbol: EDY83596.1
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic-acid transferase subfamily, putative; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: VDG1235_3226
symbol: EDY83599.1
gene_biotype: protein_coding
description:
  Bacterial transcription activator, effector binding domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_3227
symbol: EDY83600.1
gene_biotype: protein_coding
description:
  [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: VDG1235_3233
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metallopeptidase HflB subfamily; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: VDG1235_3236
symbol: EDY83609.1
gene_biotype: protein_coding
description:
  Transketolase, pyridine binding domain protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.


ensembl_gene_id: VDG1235_3239
symbol: EDY83612.1
gene_biotype: protein_coding
description:
  [E] COG0685 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: VDG1235_3246
symbol: EDY83619.1
gene_biotype: protein_coding
description:
  Sulfite reductase (NADPH) flavoprotein, alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component.


ensembl_gene_id: VDG1235_3247
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: VDG1235_3248
symbol: EDY83621.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 3 N terminal domain protein; [G] COG1472 Beta-glucosidase-related glycosidases.


ensembl_gene_id: VDG1235_325
symbol: EDY80708.1
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase (NAD) family protein; [C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: VDG1235_3251
symbol: EDY83624.1
gene_biotype: protein_coding
description:
  Dehydrogenase E1 component family; [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.


ensembl_gene_id: VDG1235_3254
symbol: EDY83627.1
gene_biotype: protein_coding
description:
  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) family; [R] COG2236 Predicted phosphoribosyltransferases.


ensembl_gene_id: VDG1235_3257
symbol: EDY83630.1
gene_biotype: protein_coding
description:
  Surface antigen variable number repeat domain protein; [U] COG2831 Hemolysin activation/secretion protein.


ensembl_gene_id: VDG1235_3259
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: VDG1235_3260
symbol: ligA-2
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: VDG1235_3268
symbol: EDY83641.1
gene_biotype: protein_coding
description:
  S4 domain protein; [J] COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).


ensembl_gene_id: VDG1235_3276
symbol: EDY83649.1
gene_biotype: protein_coding
description:
  Ser/Thr protein phosphatase family protein; [S] COG2908 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: VDG1235_3278
symbol: EDY83651.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [O] COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.


ensembl_gene_id: VDG1235_3282
symbol: mnmG
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: VDG1235_3286
symbol: pyrC
gene_biotype: protein_coding
description:
  Amidohydrolase family, putative; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: VDG1235_3289
symbol: EDY83662.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [L] COG2827 Predicted endonuclease containing a URI domain; GIY-YIG catalytic domain, putative.


ensembl_gene_id: VDG1235_3290
symbol: EDY83663.1
gene_biotype: protein_coding
description:
  ABC-2 type transporter superfamily; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.


ensembl_gene_id: VDG1235_3292
symbol: EDY83665.1
gene_biotype: protein_coding
description:
  MFS transporter, SP family; [GEPR] COG0477 Permeases of the major facilitator superfamily; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: VDG1235_3294
symbol: xerC
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: VDG1235_3296
symbol: EDY83669.1
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease protein, putative; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: VDG1235_3298
symbol: EDY83671.1
gene_biotype: protein_coding
description:
  Hydrolase, carbon-nitrogen family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.


ensembl_gene_id: VDG1235_3299
symbol: EDY83672.1
gene_biotype: protein_coding
description:
  [G] COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: VDG1235_33
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: VDG1235_3300
symbol: EDY83673.1
gene_biotype: protein_coding
description:
  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) superfamily; [M] COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase.


ensembl_gene_id: VDG1235_3303
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5, putative; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: VDG1235_3313
symbol: EDY83686.1
gene_biotype: protein_coding
description:
  Hsp20/alpha crystallin family; [O] COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: VDG1235_3314
symbol: EDY83687.1
gene_biotype: protein_coding
description:
  Aminotransferase, classes I and II superfamily; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily.


ensembl_gene_id: VDG1235_333
symbol: EDY80716.1
gene_biotype: protein_coding
description:
  HipA-like N-terminal domain family; [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.


ensembl_gene_id: VDG1235_3335
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: VDG1235_3338
symbol: EDY83711.1
gene_biotype: protein_coding
description:
  Glycosyl Hydrolase Family 88 superfamily; [R] COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.


ensembl_gene_id: VDG1235_334
symbol: EDY80717.1
gene_biotype: protein_coding
description:
  PHB/PHA accumulation regulator DNA-binding domain protein; [S] COG5394 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: VDG1235_3343
symbol: EDY83716.1
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: VDG1235_3344
symbol: EDY83717.1
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, ATP-binding protein; [P] COG4148 ABC-type molybdate transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: VDG1235_3346
symbol: EDY83719.1
gene_biotype: protein_coding
description:
  Chain length determinant protein; [M] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.


ensembl_gene_id: VDG1235_3350
symbol: EDY83723.1
gene_biotype: protein_coding
description:
  [H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: VDG1235_3358
symbol: EDY83731.1
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase, NADP-dependent; [C] COG2838 Monomeric isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.


ensembl_gene_id: VDG1235_3367
symbol: EDY83740.1
gene_biotype: protein_coding
description:
  UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).


ensembl_gene_id: VDG1235_3368
symbol: queC
gene_biotype: protein_coding
description:
  exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: VDG1235_3369
symbol: azoR
gene_biotype: protein_coding
description:
  Flavodoxin-like fold subfamily; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: VDG1235_3373
symbol: EDY83746.1
gene_biotype: protein_coding
description:
  4'-phosphopantetheinyl transferase superfamily; [H] COG2091 Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: VDG1235_3376
symbol: EDY83749.1
gene_biotype: protein_coding
description:
  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family; [E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: VDG1235_338
symbol: EDY80721.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00268; [R] COG1606 ATP-utilizing enzymes of the PP-loop superfamily.


ensembl_gene_id: VDG1235_3380
symbol: EDY83753.1
gene_biotype: protein_coding
description:
  Putative permease subfamily, putative; [P] COG0659 Sulfate permease and related transporters (MFS superfamily).


ensembl_gene_id: VDG1235_3381
symbol: EDY83754.1
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: VDG1235_3385
symbol: EDY83758.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; [R] COG0300 Short-chain dehydrogenases of various substrate specificities; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: VDG1235_3395
symbol: EDY83768.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.


ensembl_gene_id: VDG1235_3396
symbol: gatA
gene_biotype: protein_coding
description:
  Amidase, putative; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: VDG1235_3404
symbol: EDY83777.1
gene_biotype: protein_coding
description:
  FGGY family of carbohydrate kinase, C-terminal domain protein; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.


ensembl_gene_id: VDG1235_3406
symbol: EDY83779.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG1609 Transcriptional regulators; Periplasmic binding proteins and sugar binding domain of the LacI family, putative.


ensembl_gene_id: VDG1235_3413
symbol: EDY83786.1
gene_biotype: protein_coding
description:
  [R] COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_342
symbol: EDY80725.1
gene_biotype: protein_coding
description:
  Fe-S metabolism associated domain subfamily; [R] COG2166 SufE protein probably involved in Fe-S center assembly.


ensembl_gene_id: VDG1235_3421
symbol: EDY83794.1
gene_biotype: protein_coding
description:
  PEP-utilizing enzyme, TIM barrel domain, putative; [T] COG3605 Signal transduction protein containing GAF and PtsI domains.


ensembl_gene_id: VDG1235_3428
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: VDG1235_343
symbol: EDY80726.1
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.


ensembl_gene_id: VDG1235_3431
symbol: EDY83804.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: VDG1235_3434
symbol: EDY83807.1
gene_biotype: protein_coding
description:
  HipA-like N-terminal domain family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_3436
symbol: EDY83809.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; [R] COG1137 ABC-type (unclassified) transport system, ATPase component.


ensembl_gene_id: VDG1235_3439
symbol: EDY83812.1
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase, NAD binding domain family; [R] COG0673 Predicted dehydrogenases and related proteins.


ensembl_gene_id: VDG1235_3440
symbol: EDY83813.1
gene_biotype: protein_coding
description:
  O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase subfamily; [E] COG2873 O-acetylhomoserine sulfhydrylase.


ensembl_gene_id: VDG1235_3447
symbol: EDY83820.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstC, putative; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: VDG1235_3451
symbol: EDY83824.1
gene_biotype: protein_coding
description:
  Peptidase, C39 family; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.


ensembl_gene_id: VDG1235_3454
symbol: EDY83827.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Leucine rich repeat variant.


ensembl_gene_id: VDG1235_3462
symbol: EDY83835.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; [R] COG4674 Uncharacterized ABC-type transport system, ATPase component.


ensembl_gene_id: VDG1235_3470
symbol: EDY83843.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein, putative; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: VDG1235_3473
symbol: EDY83846.1
gene_biotype: protein_coding
description:
  Cytidine and deoxycytidylate deaminase zinc-binding region domain protein; [F] COG2131 Deoxycytidylate deaminase.


ensembl_gene_id: VDG1235_3481
symbol: EDY83854.1
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase superfamily; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.


ensembl_gene_id: VDG1235_3486
symbol: EDY83859.1
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase superfamily, putative; [R] COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I.


ensembl_gene_id: VDG1235_3489
symbol: nadE
gene_biotype: protein_coding
description:
  NAD synthase family; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: VDG1235_3516
symbol: EDY83889.1
gene_biotype: protein_coding
description:
  Prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG4969 Tfp pilus assembly protein, major pilin PilA.


ensembl_gene_id: VDG1235_3519
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit subfamily; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: VDG1235_3521
symbol: sigA
gene_biotype: protein_coding
description:
  Sigma-70 region 3 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: VDG1235_3523
symbol: EDY83896.1
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: VDG1235_3524
symbol: EDY83897.1
gene_biotype: protein_coding
description:
  Hydrolase, alpha/beta fold family, putative; [E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.


ensembl_gene_id: VDG1235_3525
symbol: EDY83898.1
gene_biotype: protein_coding
description:
  methylated-DNA-(protein)-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: VDG1235_3527
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit subfamily; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: VDG1235_353
symbol: EDY80736.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [UNTP] COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein.


ensembl_gene_id: VDG1235_3533
symbol: EDY83906.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 3 C terminal domain protein; [G] COG1472 Beta-glucosidase-related glycosidases.


ensembl_gene_id: VDG1235_3541
symbol: EDY83914.1
gene_biotype: protein_coding
description:
  Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: VDG1235_3551
symbol: EDY83924.1
gene_biotype: protein_coding
description:
  ATPase, AAA family; [O] COG1219 ATP-dependent protease Clp, ATPase subunit; Belongs to the ClpX chaperone family.


ensembl_gene_id: VDG1235_3556
symbol: EDY83929.1
gene_biotype: protein_coding
description:
  LGFP repeat family; [M] COG5479 Uncharacterized protein potentially involved in peptidoglycan biosynthesis.


ensembl_gene_id: VDG1235_356
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: VDG1235_3567
symbol: EDY83940.1
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: VDG1235_3568
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: VDG1235_3572
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: VDG1235_3574
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: VDG1235_3578
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: VDG1235_3580
symbol: EDY83953.1
gene_biotype: protein_coding
description:
  Nitrate ABC transporter, ATP-binding proteins C and D; [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.


ensembl_gene_id: VDG1235_3585
symbol: EDY83958.1
gene_biotype: protein_coding
description:
  Transporter, SSS family, putative; [ER] COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: VDG1235_3586
symbol: EDY83959.1
gene_biotype: protein_coding
description:
  3'(2'),5'-bisphosphate nucleotidase; [P] COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase.


ensembl_gene_id: VDG1235_3587
symbol: EDY83960.1
gene_biotype: protein_coding
description:
  FolC bifunctional protein; [H] COG0285 Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: VDG1235_3590
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: VDG1235_36
symbol: EDY80422.1
gene_biotype: protein_coding
description:
  Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_3615
symbol: ureB
gene_biotype: protein_coding
description:
  Urease, beta subunit; [E] COG0832 Urea amidohydrolase (urease) beta subunit; Belongs to the urease beta subunit family.


ensembl_gene_id: VDG1235_3623
symbol: EDY83996.1
gene_biotype: protein_coding
description:
  GDSL-like lipase/acylhydrolase domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_3625
symbol: EDY83998.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain M subfamily; [C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).


ensembl_gene_id: VDG1235_3631
symbol: EDY84004.1
gene_biotype: protein_coding
description:
  NAD binding domain of 6-phosphogluconate dehydrogenase family; [I] COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.


ensembl_gene_id: VDG1235_364
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: VDG1235_3643
symbol: EDY84016.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolases family 2, sugar binding domain protein; [G] COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: VDG1235_3646
symbol: EDY84019.1
gene_biotype: protein_coding
description:
  Bacterial transferase hexapeptide repeat protein; [R] COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.


ensembl_gene_id: VDG1235_3649
symbol: EDY84022.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.


ensembl_gene_id: VDG1235_365
symbol: lolD
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.


ensembl_gene_id: VDG1235_3650
symbol: EDY84023.1
gene_biotype: protein_coding
description:
  DNA binding domain, excisionase family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_3654
symbol: EDY84027.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctM subunit subfamily, putative; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.


ensembl_gene_id: VDG1235_366
symbol: EDY80749.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component.


ensembl_gene_id: VDG1235_3666
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: VDG1235_3675
symbol: EDY84048.1
gene_biotype: protein_coding
description:
  SCO1/SenC superfamily; [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.


ensembl_gene_id: VDG1235_368
symbol: EDY80751.1
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: VDG1235_3683
symbol: EDY84056.1
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide transporter domain family protein; [E] COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: VDG1235_3690
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD, putative; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.


ensembl_gene_id: VDG1235_3692
symbol: EDY84065.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator receiver domain, putative.


ensembl_gene_id: VDG1235_3699
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: VDG1235_370
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I subfamily; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: VDG1235_3701
symbol: EDY84073.1
gene_biotype: protein_coding
description:
  RND transporter, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: VDG1235_3707
symbol: EDY84078.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: VDG1235_3710
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: VDG1235_3715
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: VDG1235_3720
symbol: tdh
gene_biotype: protein_coding
description:
  L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.


ensembl_gene_id: VDG1235_3725
symbol: EDY84096.1
gene_biotype: protein_coding
description:
  Regulator of chromosome condensation domain protein; [DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins.


ensembl_gene_id: VDG1235_3731
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone), D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: VDG1235_3748
symbol: EDY84118.1
gene_biotype: protein_coding
description:
  Haloacid dehalogenase-like hydrolase, putative; [R] COG0637 Predicted phosphatase/phosphohexomutase.


ensembl_gene_id: VDG1235_3750
symbol: EDY84120.1
gene_biotype: protein_coding
description:
  Peptidase, S9A/B/C family, catalytic domain protein; [E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.


ensembl_gene_id: VDG1235_3751
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase family; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: VDG1235_3753
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: VDG1235_3754
symbol: EDY84124.1
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit, putative; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: VDG1235_3759
symbol: der
gene_biotype: protein_coding
description:
  GTPase, putative; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: VDG1235_376
symbol: tsaD
gene_biotype: protein_coding
description:
  Glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: VDG1235_3764
symbol: EDY84134.1
gene_biotype: protein_coding
description:
  Inorganic anion transporter, SulP family protein; [P] COG0659 Sulfate permease and related transporters (MFS superfamily).


ensembl_gene_id: VDG1235_377
symbol: EDY80760.1
gene_biotype: protein_coding
description:
  Alanine dehydrogenase/PNT, N-terminal domain family; [C] COG3288 NAD/NADP transhydrogenase alpha subunit.


ensembl_gene_id: VDG1235_3770
symbol: EDY84140.1
gene_biotype: protein_coding
description:
  Peptidase, S54 (rhomboid) family; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).


ensembl_gene_id: VDG1235_3777
symbol: EDY84147.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [KT] COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; response regulator receiver domain, putative.


ensembl_gene_id: VDG1235_3779
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: VDG1235_3785
symbol: EDY84155.1
gene_biotype: protein_coding
description:
  [R] COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).


ensembl_gene_id: VDG1235_379
symbol: EDY80762.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: VDG1235_3792
symbol: EDY84162.1
gene_biotype: protein_coding
description:
  Alpha amylase, catalytic domain subfamily, putative; [G] COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases.


ensembl_gene_id: VDG1235_3799
symbol: EDY84169.1
gene_biotype: protein_coding
description:
  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, putative; [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: VDG1235_38
symbol: EDY80424.1
gene_biotype: protein_coding
description:
  [M] COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: VDG1235_3801
symbol: hisC
gene_biotype: protein_coding
description:
  [E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: VDG1235_3813
symbol: EDY84183.1
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease protein; [Q] COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.


ensembl_gene_id: VDG1235_3818
symbol: EDY84188.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; [V] COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: VDG1235_382
symbol: EDY80765.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; response regulator receiver domain, putative.


ensembl_gene_id: VDG1235_3830
symbol: EDY84199.1
gene_biotype: protein_coding
description:
  PhoH family protein; [T] COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH.


ensembl_gene_id: VDG1235_3835
symbol: EDY84204.1
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: VDG1235_3836
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: VDG1235_384
symbol: EDY80767.1
gene_biotype: protein_coding
description:
  Mce related protein; [Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.


ensembl_gene_id: VDG1235_3841
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: VDG1235_3842
symbol: trmB
gene_biotype: protein_coding
description:
  Putative methyltransferase superfamily; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: VDG1235_3846
symbol: EDY84215.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: VDG1235_385
symbol: EDY80768.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulphide oxidoreductase, putative; [R] COG2509 Uncharacterized FAD-dependent dehydrogenases.


ensembl_gene_id: VDG1235_3858
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: VDG1235_3860
symbol: EDY84229.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolases family 2, sugar binding domain protein; [G] COG3250 Beta-galactosidase/beta-glucuronidase.


ensembl_gene_id: VDG1235_387
symbol: EDY80770.1
gene_biotype: protein_coding
description:
  Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.


ensembl_gene_id: VDG1235_3872
symbol: EDY84241.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases; NAD-binding domain 4, putative.


ensembl_gene_id: VDG1235_3877
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: VDG1235_3878
symbol: EDY84247.1
gene_biotype: protein_coding
description:
  Pyruvate, phosphate dikinase; [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: VDG1235_388
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: VDG1235_3884
symbol: EDY84253.1
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase GroES-like domain family; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: VDG1235_3887
symbol: grpE
gene_biotype: protein_coding
description:
  Co-chaperone GrpE, putative; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of  [...]


ensembl_gene_id: VDG1235_3893
symbol: aat
gene_biotype: protein_coding
description:
  leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: VDG1235_3897
symbol: EDY84266.1
gene_biotype: protein_coding
description:
  Putative membrane-bound dehydrogenase domain protein; [C] COG2010 Cytochrome c, mono- and diheme variants.


ensembl_gene_id: VDG1235_3899
symbol: EDY84268.1
gene_biotype: protein_coding
description:
  Addiction module toxin, RelE/StbE family; [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.


ensembl_gene_id: VDG1235_39
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: VDG1235_390
symbol: EDY80773.1
gene_biotype: protein_coding
description:
  Mannosyl-3-phosphoglycerate synthase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_3906
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: VDG1235_3909
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: VDG1235_3910
symbol: cobQ
gene_biotype: protein_coding
description:
  CobB/CobQ-like glutamine amidotransferase domain protein; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: VDG1235_3912
symbol: EDY84281.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 52; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_3913
symbol: birA
gene_biotype: protein_coding
description:
  biotin-(acetyl-CoA-carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.


ensembl_gene_id: VDG1235_392
symbol: EDY80775.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG2203 FOG: GAF domain.


ensembl_gene_id: VDG1235_3922
symbol: pheS
gene_biotype: protein_coding
description:
  [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: VDG1235_3928
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: VDG1235_393
symbol: EDY80776.1
gene_biotype: protein_coding
description:
  [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: VDG1235_3939
symbol: EDY84308.1
gene_biotype: protein_coding
description:
  AICARFT/IMPCHase bienzyme family; [F] COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful).


ensembl_gene_id: VDG1235_3948
symbol: EDY84317.1
gene_biotype: protein_coding
description:
  UvrC Helix-hairpin-helix N-terminal domain family; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: VDG1235_3950
symbol: ppnP
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.


ensembl_gene_id: VDG1235_3962
symbol: EDY84331.1
gene_biotype: protein_coding
description:
  [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.


ensembl_gene_id: VDG1235_3969
symbol: EDY84338.1
gene_biotype: protein_coding
description:
  Bacterial transcription activator, effector binding domain protein; [K] COG0789 Predicted transcriptional regulators.


ensembl_gene_id: VDG1235_3971
symbol: EDY84340.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate cytidylyltransferase; [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).


ensembl_gene_id: VDG1235_3973
symbol: EDY84342.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: VDG1235_3976
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: VDG1235_3978
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: VDG1235_3979
symbol: EDY84348.1
gene_biotype: protein_coding
description:
  Amino acid or sugar ABC transport system, permease protein, putative; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.


ensembl_gene_id: VDG1235_3980
symbol: EDY84349.1
gene_biotype: protein_coding
description:
  DJ-1/PfpI family; [Q] COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis.


ensembl_gene_id: VDG1235_3981
symbol: EDY84350.1
gene_biotype: protein_coding
description:
  Iron-sulfur cluster binding protein; [C] COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain.


ensembl_gene_id: VDG1235_3982
symbol: EDY84351.1
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: VDG1235_3990
symbol: ade
gene_biotype: protein_coding
description:
  Amidohydrolase family protein; [F] COG1001 Adenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.


ensembl_gene_id: VDG1235_3992
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: VDG1235_3994
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: VDG1235_3995
symbol: EDY84364.1
gene_biotype: protein_coding
description:
  Bacterial transferase hexapeptide repeat protein; [R] COG0110 Acetyltransferase (isoleucine patch superfamily).


ensembl_gene_id: VDG1235_3998
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14p/S29e, putative; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: VDG1235_4000
symbol: EDY84369.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: VDG1235_4009
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: VDG1235_4018
symbol: EDY84387.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, putative; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: VDG1235_4022
symbol: EDY84391.1
gene_biotype: protein_coding
description:
  DNA-3-methyladenine glycosylase subfamily; [L] COG2094 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: VDG1235_4025
symbol: EDY84394.1
gene_biotype: protein_coding
description:
  Class II Aldolase and Adducin N-terminal domain, putative; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.


ensembl_gene_id: VDG1235_4027
symbol: EDY84396.1
gene_biotype: protein_coding
description:
  Bacterial lipid A biosynthesis acyltransferase superfamily; [M] COG1560 Lauroyl/myristoyl acyltransferase.


ensembl_gene_id: VDG1235_4031
symbol: EDY84400.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [H] COG0352 Thiamine monophosphate synthase.


ensembl_gene_id: VDG1235_4039
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: VDG1235_4040
symbol: EDY84409.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufD; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.


ensembl_gene_id: VDG1235_4044
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: VDG1235_4048
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: VDG1235_4053
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: VDG1235_4069
symbol: EDY84438.1
gene_biotype: protein_coding
description:
  Aminotransferase, classes I and II superfamily; [E] COG1448 Aspartate/tyrosine/aromatic aminotransferase.


ensembl_gene_id: VDG1235_4076
symbol: EDY84445.1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: VDG1235_4080
symbol: EDY84449.1
gene_biotype: protein_coding
description:
  Asparate kinase, monofunctional class; [E] COG0527 Aspartokinases; Belongs to the aspartokinase family.


ensembl_gene_id: VDG1235_4083
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: VDG1235_4090
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: VDG1235_4091
symbol: EDY84460.1
gene_biotype: protein_coding
description:
  Carbohydrate binding domain protein; [S] COG5563 Predicted integral membrane proteins containing uncharacterized repeats.


ensembl_gene_id: VDG1235_4093
symbol: EDY84462.1
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: VDG1235_4094
symbol: EDY84463.1
gene_biotype: protein_coding
description:
  FtsK/SpoIIIE family, putative; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.


ensembl_gene_id: VDG1235_4097
symbol: fliW
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.


ensembl_gene_id: VDG1235_4116
symbol: EDY84485.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [S] COG0401 Uncharacterized homolog of Blt101; Uncharacterized protein family.


ensembl_gene_id: VDG1235_4118
symbol: EDY84487.1
gene_biotype: protein_coding
description:
  [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: VDG1235_4132
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: VDG1235_4133
symbol: EDY84502.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: VDG1235_4135
symbol: cmoA
gene_biotype: protein_coding
description:
  Methyltransferase, putative; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM); Belongs to the class I-like SAM-binding methyltransferase superfamily. Cx-SAM synthase family.


ensembl_gene_id: VDG1235_4139
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: VDG1235_4143
symbol: EDY84512.1
gene_biotype: protein_coding
description:
  Dihydrouridine synthase superfamily; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: VDG1235_4145
symbol: EDY84514.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.


ensembl_gene_id: VDG1235_4148
symbol: EDY84517.1
gene_biotype: protein_coding
description:
  Cytochrome C biogenesis protein transmembrane region; [OC] COG4232 Thiol:disulfide interchange protein.


ensembl_gene_id: VDG1235_415
symbol: EDY80798.1
gene_biotype: protein_coding
description:
  Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: VDG1235_4156
symbol: EDY84525.1
gene_biotype: protein_coding
description:
  Segregation and condensation protein B, putative; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: VDG1235_4166
symbol: EDY84535.1
gene_biotype: protein_coding
description:
  Sensors of blue-light using FAD family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_417
symbol: EDY80800.1
gene_biotype: protein_coding
description:
  Gas vesicle protein, GvpL/GvpF family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_4174
symbol: EDY84543.1
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein, putative; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: VDG1235_4184
symbol: EDY84553.1
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: VDG1235_4186
symbol: EDY84555.1
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: VDG1235_4189
symbol: EDY84558.1
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide transporter domain family protein; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: VDG1235_4190
symbol: rho-2
gene_biotype: protein_coding
description:
  Rho termination factor, RNA-binding domain family; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: VDG1235_4200
symbol: EDY84569.1
gene_biotype: protein_coding
description:
  Flagellar protein export ATPase FliI; [NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase.


ensembl_gene_id: VDG1235_4204
symbol: rny
gene_biotype: protein_coding
description:
  Conserved hypothetical protein YmdA/YtgF; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.


ensembl_gene_id: VDG1235_4207
symbol: EDY84576.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: VDG1235_4209
symbol: EDY84578.1
gene_biotype: protein_coding
description:
  Carbohydrate binding module (family 6); [M] COG5498 Predicted glycosyl hydrolase; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: VDG1235_421
symbol: coaX
gene_biotype: protein_coding
description:
  Transcriptional activator, putative, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: VDG1235_4220
symbol: gcvT
gene_biotype: protein_coding
description:
  Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.


ensembl_gene_id: VDG1235_4222
symbol: EDY84591.1
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase superfamily; [M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases.


ensembl_gene_id: VDG1235_4223
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: VDG1235_4227
symbol: EDY84595.1
gene_biotype: protein_coding
description:
  PaaX-like protein C-terminal domain; [K] COG3327 Phenylacetic acid-responsive transcriptional repressor.


ensembl_gene_id: VDG1235_4228
symbol: EDY84596.1
gene_biotype: protein_coding
description:
  Bacterial flagellin C-terminus domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: VDG1235_4234
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinases subfamily, putative; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: VDG1235_424
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: VDG1235_4245
symbol: EDY84613.1
gene_biotype: protein_coding
description:
  Carboxymuconolactone decarboxylase family protein; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.


ensembl_gene_id: VDG1235_4251
symbol: rpsM
gene_biotype: protein_coding
description:
  Ribosomal protein S13p/S18e; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: VDG1235_4254
symbol: cysH
gene_biotype: protein_coding
description:
  Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: VDG1235_4255
symbol: rpsQ
gene_biotype: protein_coding
description:
  Ribosomal protein S17, putative; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: VDG1235_4256
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: VDG1235_426
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: VDG1235_4267
symbol: EDY84635.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: VDG1235_427
symbol: EDY80810.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0784 FOG: CheY-like receiver.


ensembl_gene_id: VDG1235_4272
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: VDG1235_4275
symbol: EDY84643.1
gene_biotype: protein_coding
description:
  HMGL-like domain protein; [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: VDG1235_4278
symbol: EDY84646.1
gene_biotype: protein_coding
description:
  Glycosyl Hydrolase Family 88 family; [R] COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.


ensembl_gene_id: VDG1235_4283
symbol: EDY84651.1
gene_biotype: protein_coding
description:
  Pterin-4-alpha-carbinolamine dehydratase superfamily; [H] COG2154 Pterin-4a-carbinolamine dehydratase.


ensembl_gene_id: VDG1235_4285
symbol: EDY84653.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; FAD binding domain, putative.


ensembl_gene_id: VDG1235_4288
symbol: EDY84656.1
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide transporter domain family protein; [R] COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: VDG1235_4295
symbol: EDY84662.1
gene_biotype: protein_coding
description:
  [E] COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; Belongs to the HisA/HisF family.


ensembl_gene_id: VDG1235_4302
symbol: EDY84669.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: VDG1235_4309
symbol: EDY84676.1
gene_biotype: protein_coding
description:
  ParB-like nuclease domain family; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.


ensembl_gene_id: VDG1235_4315
symbol: EDY84682.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein, putative; [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.


ensembl_gene_id: VDG1235_4320
symbol: EDY84687.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis. Belongs to the LpxC family.


ensembl_gene_id: VDG1235_4330
symbol: EDY84697.1
gene_biotype: protein_coding
description:
  Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: VDG1235_4331
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: VDG1235_4337
symbol: EDY84704.1
gene_biotype: protein_coding
description:
  Putative permease subfamily; [P] COG0659 Sulfate permease and related transporters (MFS superfamily).


ensembl_gene_id: VDG1235_4344
symbol: EDY84711.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein, Csd1 family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_4346
symbol: EDY84713.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [NT] COG0835 Chemotaxis signal transduction protein; CheW-like domain, putative.


ensembl_gene_id: VDG1235_4353
symbol: EDY84720.1
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; [R] COG1778 Low specificity phosphatase (HAD superfamily).


ensembl_gene_id: VDG1235_4360
symbol: EDY84727.1
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: VDG1235_4367
symbol: EDY84734.1
gene_biotype: protein_coding
description:
  Putative quinone oxidoreductase, YhdH/YhfP family; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: VDG1235_4376
symbol: EDY84743.1
gene_biotype: protein_coding
description:
  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I protein; [G] COG1109 Phosphomannomutase.


ensembl_gene_id: VDG1235_4380
symbol: EDY84747.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases.


ensembl_gene_id: VDG1235_4383
symbol: EDY84750.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [C] COG0822 NifU homolog involved in Fe-S cluster formation; NifU-like N terminal domain, putative.


ensembl_gene_id: VDG1235_4386
symbol: EDY84753.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); Carboxyl transferase domain, putative.


ensembl_gene_id: VDG1235_4389
symbol: EDY84756.1
gene_biotype: protein_coding
description:
  Putative bacterial transglutaminase domain family protein; [S] COG4196 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: VDG1235_4396
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: VDG1235_44
symbol: rnfE
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, E subunit subfamily; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: VDG1235_4401
symbol: EDY84768.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [QC] COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein.


ensembl_gene_id: VDG1235_4403
symbol: queE
gene_biotype: protein_coding
description:
  Radical SAM domain protein, putative; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: VDG1235_4405
symbol: EDY84772.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [S] COG1430 Uncharacterized conserved protein; uncharacterized ACR, COG1430, putative.


ensembl_gene_id: VDG1235_4406
symbol: EDY84773.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: VDG1235_4411
symbol: EDY84778.1
gene_biotype: protein_coding
description:
  Phosphorylase family; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.


ensembl_gene_id: VDG1235_4413
symbol: EDY84780.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain L subfamily; [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.


ensembl_gene_id: VDG1235_4423
symbol: EDY84790.1
gene_biotype: protein_coding
description:
  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, putative; [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: VDG1235_4427
symbol: EDY84794.1
gene_biotype: protein_coding
description:
  Beta-ketoacyl synthase, C-terminal domain protein; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: VDG1235_4428
symbol: EDY84795.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctM subunit subfamily; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.


ensembl_gene_id: VDG1235_4434
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10, putative; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: VDG1235_4437
symbol: EDY84804.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); STAS domain, putative.


ensembl_gene_id: VDG1235_4438
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: VDG1235_4444
symbol: EDY84811.1
gene_biotype: protein_coding
description:
  ABC-2 type transporter superfamily; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.


ensembl_gene_id: VDG1235_4448
symbol: EDY84815.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00730, putative; [R] COG1611 Predicted Rossmann fold nucleotide-binding protein.


ensembl_gene_id: VDG1235_4459
symbol: corA
gene_biotype: protein_coding
description:
  Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.


ensembl_gene_id: VDG1235_4461
symbol: EDY84828.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 3 N terminal domain protein; [G] COG1472 Beta-glucosidase-related glycosidases; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: VDG1235_4466
symbol: EDY84833.1
gene_biotype: protein_coding
description:
  DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: VDG1235_4470
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: VDG1235_4473
symbol: EDY84840.1
gene_biotype: protein_coding
description:
  [S] COG2135 Uncharacterized conserved protein; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: VDG1235_4480
symbol: EDY84847.1
gene_biotype: protein_coding
description:
  Prenyltransferase, UbiA family; [H] COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.


ensembl_gene_id: VDG1235_4484
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: VDG1235_4485
symbol: EDY84852.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.


ensembl_gene_id: VDG1235_4511
symbol: EDY84877.1
gene_biotype: protein_coding
description:
  Ser/Thr protein phosphatase family protein; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: VDG1235_4515
symbol: EDY84881.1
gene_biotype: protein_coding
description:
  PhnA Zinc-Ribbon family; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism.


ensembl_gene_id: VDG1235_4523
symbol: EDY84889.1
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: VDG1235_4531
symbol: EDY84897.1
gene_biotype: protein_coding
description:
  ATPase, AAA family; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.


ensembl_gene_id: VDG1235_4541
symbol: EDY84907.1
gene_biotype: protein_coding
description:
  Aminotransferase, classes I and II superfamily; [E] COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities.


ensembl_gene_id: VDG1235_4549
symbol: EDY84915.1
gene_biotype: protein_coding
description:
  Methyltransferase domain family; [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.


ensembl_gene_id: VDG1235_4553
symbol: EDY84919.1
gene_biotype: protein_coding
description:
  [E] COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: VDG1235_4563
symbol: EDY84929.1
gene_biotype: protein_coding
description:
  Protease Do subfamily; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.


ensembl_gene_id: VDG1235_4581
symbol: EDY84947.1
gene_biotype: protein_coding
description:
  [EH] COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes.


ensembl_gene_id: VDG1235_4587
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: VDG1235_4589
symbol: EDY84955.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: VDG1235_4593
symbol: glgA
gene_biotype: protein_coding
description:
  Glycogen/starch synthase, ADP-glucose type subfamily; Synthesizes alpha-1,4-glucan chains using ADP-glucose.


ensembl_gene_id: VDG1235_4596
symbol: EDY84962.1
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: VDG1235_4600
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: VDG1235_4603
symbol: EDY84969.1
gene_biotype: protein_coding
description:
  Melibiase subfamily, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_4606
symbol: EDY84972.1
gene_biotype: protein_coding
description:
  Amidase, hydantoinase/carbamoylase family; [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: VDG1235_4610
symbol: EDY84976.1
gene_biotype: protein_coding
description:
  Kinase, pfkB family; [G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB).


ensembl_gene_id: VDG1235_4618
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: VDG1235_4627
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: VDG1235_4629
symbol: EDY84995.1
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3, C-terminal domain, putative; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: VDG1235_4648
symbol: EDY85014.1
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: VDG1235_4649
symbol: EDY85015.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [LKJ] COG0513 Superfamily II DNA and RNA helicases; response regulator receiver domain, putative.


ensembl_gene_id: VDG1235_4660
symbol: EDY85026.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [F] COG0125 Thymidylate kinase; Periplasmic binding proteins and sugar binding domain of the LacI family, putative.


ensembl_gene_id: VDG1235_4661
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: VDG1235_4668
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: VDG1235_4671
symbol: EDY85037.1
gene_biotype: protein_coding
description:
  Thermophilic metalloprotease (M29) superfamily; [E] COG2309 Leucyl aminopeptidase (aminopeptidase T).


ensembl_gene_id: VDG1235_4679
symbol: EDY85045.1
gene_biotype: protein_coding
description:
  Methyltransferase, putative; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoB family.


ensembl_gene_id: VDG1235_4680
symbol: EDY85046.1
gene_biotype: protein_coding
description:
  Peptidase, M16 (pitrilysin) family; [R] COG0612 Predicted Zn-dependent peptidases; Belongs to the peptidase M16 family.


ensembl_gene_id: VDG1235_4686
symbol: EDY85052.1
gene_biotype: protein_coding
description:
  Stress responsive A/B Barrel Domain superfamily; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_4689
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: VDG1235_469
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: VDG1235_4703
symbol: EDY85069.1
gene_biotype: protein_coding
description:
  Glycine cleavage T-protein C-terminal barrel domain; [R] COG0354 Predicted aminomethyltransferase related to GcvT.


ensembl_gene_id: VDG1235_4707
symbol: EDY85073.1
gene_biotype: protein_coding
description:
  3-beta hydroxysteroid dehydrogenase/isomerase family; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.


ensembl_gene_id: VDG1235_4711
symbol: EDY85077.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: VDG1235_4717
symbol: EDY85083.1
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase superfamily; [G] COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase.


ensembl_gene_id: VDG1235_4726
symbol: EDY85091.1
gene_biotype: protein_coding
description:
  Prokaryotic diacylglycerol kinase superfamily; Recycling of diacylglycerol produced during the turnover of membrane phospholipid; Belongs to the bacterial diacylglycerol kinase family.


ensembl_gene_id: VDG1235_4734
symbol: EDY85099.1
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase/homocitrate synthase family protein; [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: VDG1235_4743
symbol: EDY85108.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.


ensembl_gene_id: VDG1235_4748
symbol: EDY85113.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; Phospholipase D. Active site motif domain protein.


ensembl_gene_id: VDG1235_475
symbol: EDY80858.1
gene_biotype: protein_coding
description:
  BAAT / Acyl-CoA thioester hydrolase C terminal domain family protein; [R] COG1073 Hydrolases of the alpha/beta superfamily.


ensembl_gene_id: VDG1235_4760
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: VDG1235_4761
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: VDG1235_4763
symbol: EDY85128.1
gene_biotype: protein_coding
description:
  [O] COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase); Belongs to the peptidase C15 family.


ensembl_gene_id: VDG1235_4764
symbol: EDY85129.1
gene_biotype: protein_coding
description:
  Bifunctional DNA primase/polymerase, N-terminal domain family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_4765
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: VDG1235_4768
symbol: EDY85133.1
gene_biotype: protein_coding
description:
  Transketolase, thiamine diphosphate binding domain, putative; [G] COG3959 Transketolase, N-terminal subunit.


ensembl_gene_id: VDG1235_4769
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: VDG1235_4775
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: VDG1235_4778
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit subfamily; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: VDG1235_478
symbol: EDY80861.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Thioesterase domain, putative.


ensembl_gene_id: VDG1235_4782
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: VDG1235_4784
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: VDG1235_4786
symbol: EDY85151.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, putative; [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: VDG1235_4788
symbol: EDY85153.1
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; [I] COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: VDG1235_4789
symbol: EDY85154.1
gene_biotype: protein_coding
description:
  Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: VDG1235_4790
symbol: xerC-2
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: VDG1235_4798
symbol: EDY85163.1
gene_biotype: protein_coding
description:
  Transporter, major facilitator family, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.


ensembl_gene_id: VDG1235_4804
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: VDG1235_4810
symbol: rbsA
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.


ensembl_gene_id: VDG1235_4825
symbol: EDY85190.1
gene_biotype: protein_coding
description:
  DNA protecting protein DprA, putative; [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.


ensembl_gene_id: VDG1235_4839
symbol: EDY85204.1
gene_biotype: protein_coding
description:
  poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit subfamily; [I] COG3243 Poly(3-hydroxyalkanoate) synthetase.


ensembl_gene_id: VDG1235_4841
symbol: EDY85206.1
gene_biotype: protein_coding
description:
  ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.


ensembl_gene_id: VDG1235_4852
symbol: EDY85217.1
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: VDG1235_486
symbol: EDY80869.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: VDG1235_4862
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: VDG1235_488
symbol: EDY80871.1
gene_biotype: protein_coding
description:
  Helicase, RecD/TraA family; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.


ensembl_gene_id: VDG1235_4882
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: VDG1235_4897
symbol: EDY85262.1
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: VDG1235_490
symbol: EDY80873.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; histidine triad domain, putative.


ensembl_gene_id: VDG1235_4901
symbol: acsA
gene_biotype: protein_coding
description:
  acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: VDG1235_4911
symbol: EDY85276.1
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: VDG1235_492
symbol: EDY80875.1
gene_biotype: protein_coding
description:
  Bacterial transferase hexapeptide repeat protein; [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).


ensembl_gene_id: VDG1235_4922
symbol: EDY85287.1
gene_biotype: protein_coding
description:
  [K] COG1191 DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family.


ensembl_gene_id: VDG1235_4924
symbol: EDY85289.1
gene_biotype: protein_coding
description:
  Histidine triad domain protein; [FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.


ensembl_gene_id: VDG1235_4926
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 superfamily; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: VDG1235_4928
symbol: EDY85293.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00278, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: VDG1235_493
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: VDG1235_501
symbol: EDY80884.1
gene_biotype: protein_coding
description:
  Class II Aldolase and Adducin N-terminal domain protein; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.


ensembl_gene_id: VDG1235_506
symbol: EDY80889.1
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase (NAD) family protein; [E] COG0506 Proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: VDG1235_511
symbol: EDY80894.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [G] COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase.


ensembl_gene_id: VDG1235_514
symbol: EDY80897.1
gene_biotype: protein_coding
description:
  Aminotransferase, classes I and II superfamily; [H] COG0156 7-keto-8-aminopelargonate synthetase and related enzymes.


ensembl_gene_id: VDG1235_518
symbol: EDY80901.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [L] COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB.


ensembl_gene_id: VDG1235_519
symbol: EDY80902.1
gene_biotype: protein_coding
description:
  2-oxo acid dehydrogenases acyltransferase (catalytic domain) protein; [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.


ensembl_gene_id: VDG1235_533
symbol: EDY80916.1
gene_biotype: protein_coding
description:
  X-Pro dipeptidyl-peptidase (S15 family); [E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.


ensembl_gene_id: VDG1235_535
symbol: EDY80918.1
gene_biotype: protein_coding
description:
  Glutamate synthase, NADH/NADPH, small subunit subfamily; [ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.


ensembl_gene_id: VDG1235_54
symbol: rnfC
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, C subunit subfamily; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.


ensembl_gene_id: VDG1235_540
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: VDG1235_544
symbol: EDY80927.1
gene_biotype: protein_coding
description:
  DNA-cytosine methyltransferase superfamily; [L] COG0270 Site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: VDG1235_546
symbol: rplC
gene_biotype: protein_coding
description:
  Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: VDG1235_555
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: VDG1235_565
symbol: nagB
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate isomerase, putative; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.


ensembl_gene_id: VDG1235_568
symbol: EDY80951.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [R] COG4152 ABC-type uncharacterized transport system, ATPase component.


ensembl_gene_id: VDG1235_571
symbol: msrP
gene_biotype: protein_coding
description:
  Oxidoreductase molybdopterin binding domain protein; Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) dias [...]


ensembl_gene_id: VDG1235_572
symbol: EDY80955.1
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; [R] COG0820 Predicted Fe-S-cluster redox enzyme; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: VDG1235_573
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: VDG1235_575
symbol: EDY80958.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; Belongs to the MlaE permease family.


ensembl_gene_id: VDG1235_578
symbol: EDY80961.1
gene_biotype: protein_coding
description:
  [K] COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Belongs to the sigma-70 factor family.


ensembl_gene_id: VDG1235_58
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: VDG1235_581
symbol: EDY80964.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [I] COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; FabA-like domain, putative.


ensembl_gene_id: VDG1235_587
symbol: EDY80970.1
gene_biotype: protein_coding
description:
  Succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: VDG1235_589
symbol: EDY80972.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: VDG1235_590
symbol: EDY80973.1
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase family; [M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases.


ensembl_gene_id: VDG1235_592
symbol: rpsK
gene_biotype: protein_coding
description:
  Ribosomal protein S11, putative; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: VDG1235_595
symbol: EDY80978.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family protein; [E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.


ensembl_gene_id: VDG1235_599
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: VDG1235_605
symbol: EDY80988.1
gene_biotype: protein_coding
description:
  [C] COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.


ensembl_gene_id: VDG1235_607
symbol: EDY80990.1
gene_biotype: protein_coding
description:
  ABC transporter, FeCT family, permease protein; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: VDG1235_61
symbol: EDY80447.1
gene_biotype: protein_coding
description:
  acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: VDG1235_617
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: VDG1235_62
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-acyl N-acetylglycosamine deacetylase, putative; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.


ensembl_gene_id: VDG1235_631
symbol: EDY81014.1
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein, family 5; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: VDG1235_633
symbol: EDY81016.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein, putative; [G] COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: VDG1235_646
symbol: glnD
gene_biotype: protein_coding
description:
  protein-P-II uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.


ensembl_gene_id: VDG1235_654
symbol: EDY81037.1
gene_biotype: protein_coding
description:
  Conserved domain protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: VDG1235_655
symbol: EDY81038.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; [R] COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster.


ensembl_gene_id: VDG1235_665
symbol: EDY81048.1
gene_biotype: protein_coding
description:
  Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain, putative; [F] COG4631 Xanthine dehydrogenase, molybdopterin-binding subunit B.


ensembl_gene_id: VDG1235_667
symbol: EDY81050.1
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: VDG1235_674
symbol: EDY81057.1
gene_biotype: protein_coding
description:
  Luciferase-like monooxygenase superfamily; [C] COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: VDG1235_680
symbol: EDY81063.1
gene_biotype: protein_coding
description:
  Malonyl-CoA decarboxylase superfamily; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.


ensembl_gene_id: VDG1235_690
symbol: menB
gene_biotype: protein_coding
description:
  Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).


ensembl_gene_id: VDG1235_693
symbol: EDY81076.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family protein; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.


ensembl_gene_id: VDG1235_697
symbol: EDY81080.1
gene_biotype: protein_coding
description:
  Addiction module antitoxin, Axe family; Antitoxin component of a type II toxin-antitoxin (TA) system.


ensembl_gene_id: VDG1235_71
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: VDG1235_721
symbol: EDY81104.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00245; [R] COG0390 ABC-type uncharacterized transport system, permease component.


ensembl_gene_id: VDG1235_725
symbol: EDY81108.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: VDG1235_735
symbol: folD
gene_biotype: protein_coding
description:
  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: VDG1235_738
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: VDG1235_739
symbol: EDY81122.1
gene_biotype: protein_coding
description:
  Nitrite and sulphite reductase 4Fe-4S domain protein; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: VDG1235_740
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: VDG1235_755
symbol: tadA
gene_biotype: protein_coding
description:
  Cytidine and deoxycytidylate deaminase zinc-binding region domain protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: VDG1235_76
symbol: EDY80462.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).


ensembl_gene_id: VDG1235_760
symbol: EDY81143.1
gene_biotype: protein_coding
description:
  Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: VDG1235_761
symbol: pheT
gene_biotype: protein_coding
description:
  [J] COG0072 Phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: VDG1235_766
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: VDG1235_77
symbol: EDY80463.1
gene_biotype: protein_coding
description:
  Oxidoreductase NAD-binding domain protein; [P] COG0369 Sulfite reductase, alpha subunit (flavoprotein).


ensembl_gene_id: VDG1235_774
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: VDG1235_775
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: VDG1235_780
symbol: rsmI
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00096; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: VDG1235_800
symbol: EDY81183.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.


ensembl_gene_id: VDG1235_816
symbol: EDY81199.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.


ensembl_gene_id: VDG1235_818
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: VDG1235_822
symbol: EDY81205.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor plug domain protein; [P] COG4774 Outer membrane receptor for monomeric catechols.


ensembl_gene_id: VDG1235_827
symbol: EDY81210.1
gene_biotype: protein_coding
description:
  TonB-dependent receptor plug domain protein; [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins.


ensembl_gene_id: VDG1235_83
symbol: EDY80469.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [G] COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: VDG1235_841
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: VDG1235_842
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: VDG1235_843
symbol: EDY81226.1
gene_biotype: protein_coding
description:
  FeS assembly ATPase SufC; [O] COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.


ensembl_gene_id: VDG1235_847
symbol: EDY81230.1
gene_biotype: protein_coding
description:
  Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: VDG1235_849
symbol: EDY81232.1
gene_biotype: protein_coding
description:
  Prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.


ensembl_gene_id: VDG1235_856
symbol: menD
gene_biotype: protein_coding
description:
  2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.


ensembl_gene_id: VDG1235_859
symbol: EDY81241.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: VDG1235_860
symbol: kduI
gene_biotype: protein_coding
description:
  5-keto 4-deoxyuronate isomerase superfamily; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.


ensembl_gene_id: VDG1235_861
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: VDG1235_867
symbol: rbsK
gene_biotype: protein_coding
description:
  Kinase, pfkB family; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: VDG1235_875
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N subfamily; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: VDG1235_876
symbol: EDY81258.1
gene_biotype: protein_coding
description:
  Type II/IV secretion system protein; [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.


ensembl_gene_id: VDG1235_89
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetases subfamily; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: VDG1235_892
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: VDG1235_895
symbol: EDY81277.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein).


ensembl_gene_id: VDG1235_90
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase domain protein; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: VDG1235_909
symbol: EDY81291.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; [KG] COG1349 Transcriptional regulators of sugar metabolism.


ensembl_gene_id: VDG1235_914
symbol: EDY81296.1
gene_biotype: protein_coding
description:
  MBOAT family; [M] COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: VDG1235_926
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: VDG1235_927
symbol: EDY81309.1
gene_biotype: protein_coding
description:
  Hydrolase, NUDIX family, putative; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: VDG1235_929
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: VDG1235_955
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N', putative; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: VDG1235_959
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: VDG1235_96
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: VDG1235_966
symbol: EDY81348.1
gene_biotype: protein_coding
description:
  ATPase, AAA family protein; [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase.


ensembl_gene_id: VDG1235_969
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase substrate binding domain family; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: VDG1235_97
symbol: EDY80483.1
gene_biotype: protein_coding
description:
  Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis; overlaps another CDS with the same product name.


ensembl_gene_id: VDG1235_973
symbol: EDY81355.1
gene_biotype: protein_coding
description:
  Stage II sporulation protein E, putative; [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit.


ensembl_gene_id: VDG1235_974
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: VDG1235_982
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: VDG1235_990
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: VDG1235_993
symbol: EDY81375.1
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein, family 3; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: VDG1235_996
symbol: argG
gene_biotype: protein_coding
description:
  [E] COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: VDG1235_997
symbol: EDY81379.1
gene_biotype: protein_coding
description:
  Glycosyltransferase family 28 N-terminal domain; [GC] COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.


ensembl_gene_id: VDG1235_999
symbol: EDY81381.1
gene_biotype: protein_coding
description:
  UreE urease accessory protein, C-terminal domain; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly.


