# geneInfo

ensembl_gene_id: Bphy_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.


ensembl_gene_id: Bphy_0002
symbol: Bphy_0002
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Bphy_0003
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Bphy_0006
symbol: Bphy_0006
gene_biotype: protein_coding
description:
  TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: bxe:Bxe_A4445 ethanolamine transporter, EAT family, APC superfamily.


ensembl_gene_id: Bphy_0007
symbol: Bphy_0007
gene_biotype: protein_coding
description:
  PFAM: Ethanolamine ammonia lyase large subunit; KEGG: bxe:Bxe_A4444 putative ethanolamine ammonia lyase large subunit.


ensembl_gene_id: Bphy_0008
symbol: Bphy_0008
gene_biotype: protein_coding
description:
  PFAM: Ethanolamine ammonia-lyase light chain; KEGG: bxe:Bxe_A4443 ethanolamine ammonia-lyase; Belongs to the EutC family.


ensembl_gene_id: Bphy_0010
symbol: Bphy_0010
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: bxe:Bxe_A4441 aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Bphy_0011
symbol: Bphy_0011
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A4440 transcriptional regulator, AraC family.


ensembl_gene_id: Bphy_0013
symbol: Bphy_0013
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bte:BTH_II0214 ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family.


ensembl_gene_id: Bphy_0015
symbol: Bphy_0015
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bcn:Bcen_0256 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Bphy_0016
symbol: Bphy_0016
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_A4434 ABC amino acid transporter, periplasmic ligand binding protein; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Bphy_0017
symbol: Bphy_0017
gene_biotype: protein_coding
description:
  Putative transmembrane anti-sigma factor; KEGG: bxe:Bxe_B1670 predicted transmembrane transcriptional regulator (anti-sigma factor).


ensembl_gene_id: Bphy_0018
symbol: Bphy_0018
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B1671 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Bphy_0019
symbol: Bphy_0019
gene_biotype: protein_coding
description:
  Putative transmembrane anti-sigma factor; KEGG: bxe:Bxe_B1672 predicted transmembrane transcriptional regulator (anti-sigma factor).


ensembl_gene_id: Bphy_0022
symbol: Bphy_0022
gene_biotype: protein_coding
description:
  TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bmn:BMA10247_A2177 hypothetical protein.


ensembl_gene_id: Bphy_0023
symbol: Bphy_0023
gene_biotype: protein_coding
description:
  TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bxe:Bxe_B2595 rhs element Vgr protein.


ensembl_gene_id: Bphy_0027
symbol: Bphy_0027
gene_biotype: protein_coding
description:
  PFAM: thioesterase superfamily protein; KEGG: bxe:Bxe_A4425 phenylacetic acid degradation-related protein.


ensembl_gene_id: Bphy_0029
symbol: Bphy_0029
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bxe:Bxe_A4423 putative 2-hydroxyacid dehydrogenase.


ensembl_gene_id: Bphy_0030
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: Bphy_0031
symbol: Bphy_0031
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A4420 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_0032
symbol: Bphy_0032
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A4419 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein.


ensembl_gene_id: Bphy_0035
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: Bphy_0036
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: Bphy_0037
symbol: Bphy_0037
gene_biotype: protein_coding
description:
  PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bxe:Bxe_A4414 amino acid efflux pump, RhtB family, LysE superfamily.


ensembl_gene_id: Bphy_0038
symbol: htpX
gene_biotype: protein_coding
description:
  PFAM: peptidase M48 Ste24p; KEGG: bte:BTH_I0131 heat shock protein HtpX, putative; Belongs to the peptidase M48B family.


ensembl_gene_id: Bphy_0041
symbol: Bphy_0041
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A4410 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: Bphy_0042
symbol: Bphy_0042
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: bxe:Bxe_A4409 two component transcriptional regulator, fis family.


ensembl_gene_id: Bphy_0043
symbol: queC
gene_biotype: protein_coding
description:
  exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: Bphy_0044
symbol: queE
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: Bphy_0045
symbol: Bphy_0045
gene_biotype: protein_coding
description:
  TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: bxe:Bxe_A4405 putative 6-pyruvoyl tetrahydropterin synthase.


ensembl_gene_id: Bphy_0046
symbol: Bphy_0046
gene_biotype: protein_coding
description:
  PFAM: HpcH/HpaI aldolase; KEGG: bxe:Bxe_A4404 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Bphy_0048
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: Bphy_0049
symbol: mrdA
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.


ensembl_gene_id: Bphy_0050
symbol: Bphy_0050
gene_biotype: protein_coding
description:
  TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: bxe:Bxe_A4400 rod shape-determining protein MreD.


ensembl_gene_id: Bphy_0051
symbol: Bphy_0051
gene_biotype: protein_coding
description:
  TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: bxe:Bxe_A4399 rod shape-determining protein MreC.


ensembl_gene_id: Bphy_0052
symbol: Bphy_0052
gene_biotype: protein_coding
description:
  TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: bte:BTH_I0146 rod shape-determining protein MreB.


ensembl_gene_id: Bphy_0053
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: Bphy_0054
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: Bphy_0055
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Bphy_0057
symbol: Bphy_0057
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A4393 exodeoxyribonucleaseIII xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Bphy_0059
symbol: Bphy_0059
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4390 putative major facilitator superfamily (MFS)muropeptide transporter.


ensembl_gene_id: Bphy_0060
symbol: Bphy_0060
gene_biotype: protein_coding
description:
  TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; KEGG: bxe:Bxe_A4389 hypothetical protein.


ensembl_gene_id: Bphy_0061
symbol: metXS
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.


ensembl_gene_id: Bphy_0063
symbol: Bphy_0063
gene_biotype: protein_coding
description:
  Pyrimidine 5'-nucleotidase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_A4386 HAD-superfamily hydrolase, subfamily IA, variant3.


ensembl_gene_id: Bphy_0064
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: Bphy_0066
symbol: Bphy_0066
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_A4384 hypothetical protein.


ensembl_gene_id: Bphy_0067
symbol: Bphy_0067
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A4383 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Bphy_0068
symbol: Bphy_0068
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: bxe:Bxe_A4382 two component transcriptional regulator, fis family.


ensembl_gene_id: Bphy_0069
symbol: hslU
gene_biotype: protein_coding
description:
  Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: Bphy_0070
symbol: hslV
gene_biotype: protein_coding
description:
  20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: Bphy_0071
symbol: dksA
gene_biotype: protein_coding
description:
  Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: Bphy_0072
symbol: Bphy_0072
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bxe:Bxe_A4377 hypothetical protein.


ensembl_gene_id: Bphy_0074
symbol: xerC
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Bphy_0076
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: Bphy_0077
symbol: Bphy_0077
gene_biotype: protein_coding
description:
  PFAM: lipid A biosynthesis acyltransferase; KEGG: bxe:Bxe_A4372 putative lipid A biosynthesis lauroylacyltransferase.


ensembl_gene_id: Bphy_0078
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: Bphy_0084
symbol: Bphy_0084
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4365 major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_0085
symbol: Bphy_0085
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: bxe:Bxe_A4362 cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND superfamily.


ensembl_gene_id: Bphy_0087
symbol: srkA
gene_biotype: protein_coding
description:
  Aminoglycoside phosphotransferase; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.


ensembl_gene_id: Bphy_0090
symbol: Bphy_0090
gene_biotype: protein_coding
description:
  PFAM: carbon monoxide dehydrogenase subunit G; KEGG: bxe:Bxe_A4356 putative carbon monoxide dehydrogenase, CoxG subunit.


ensembl_gene_id: Bphy_0091
symbol: Bphy_0091
gene_biotype: protein_coding
description:
  PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: bxe:Bxe_A4355 putative carbon monoxide dehydrogenase, CoxE subunit.


ensembl_gene_id: Bphy_0092
symbol: Bphy_0092
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A4354 putative ATPase.


ensembl_gene_id: Bphy_0093
symbol: Bphy_0093
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bxe:Bxe_A4353 putative carbon monoxide dehydrogenase, medium subunit (CoxM).


ensembl_gene_id: Bphy_0094
symbol: Bphy_0094
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bxe:Bxe_A4352 carbon-monoxide dehydrogenase form II, large subunit.


ensembl_gene_id: Bphy_0095
symbol: Bphy_0095
gene_biotype: protein_coding
description:
  PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bxe:Bxe_A4351 putative carbon-monoxide dehydrogenase, small subunit (CoxS).


ensembl_gene_id: Bphy_0096
symbol: Bphy_0096
gene_biotype: protein_coding
description:
  PFAM: amino acid permease-associated region; KEGG: bxe:Bxe_A4348 basic amino acid transporter, CAT family, APC superfamily.


ensembl_gene_id: Bphy_0097
symbol: Bphy_0097
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_A4347 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Bphy_0098
symbol: Bphy_0098
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bxe:Bxe_A4346 putative signal transduction histidine kinase.


ensembl_gene_id: Bphy_0099
symbol: Bphy_0099
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bxe:Bxe_A4345 ferredoxin--NADP reductase.


ensembl_gene_id: Bphy_0104
symbol: Bphy_0104
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A4335 putative ATP-dependent protease La.


ensembl_gene_id: Bphy_0106
symbol: Bphy_0106
gene_biotype: protein_coding
description:
  2-hydroxyglutarate dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_A4334 putative FAD dependent oxidoreductase.


ensembl_gene_id: Bphy_0107
symbol: Bphy_0107
gene_biotype: protein_coding
description:
  High potential iron-sulfur protein; Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria; Belongs to the high-potential iron-sulfur protein (HiPIP) family.


ensembl_gene_id: Bphy_0109
symbol: Bphy_0109
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4332 major facilitator superfamily (MFS) metabolite/H+ symporter.


ensembl_gene_id: Bphy_0111
symbol: Bphy_0111
gene_biotype: protein_coding
description:
  Carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; KEGG: bxe:Bxe_A4330 carboxymethylenebutenolidase.


ensembl_gene_id: Bphy_0112
symbol: Bphy_0112
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A4327 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0114
symbol: Bphy_0114
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4324 major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_0115
symbol: Bphy_0115
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bxe:Bxe_A4323 hypothetical protein.


ensembl_gene_id: Bphy_0116
symbol: Bphy_0116
gene_biotype: protein_coding
description:
  PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bxe:Bxe_A4321 putative HNS-like transcriptional regulator.


ensembl_gene_id: Bphy_0117
symbol: Bphy_0117
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bxe:Bxe_A4320 cation (Co++/Zn++/Cd++) efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: Bphy_0118
symbol: Bphy_0118
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; KEGG: bxe:Bxe_A4319 transcriptional regulator, AsnC family.


ensembl_gene_id: Bphy_0120
symbol: Bphy_0120
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_A4317 putative metallo-beta-lactamase family protein.


ensembl_gene_id: Bphy_0121
symbol: rlpA
gene_biotype: protein_coding
description:
  Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: Bphy_0122
symbol: rsmI
gene_biotype: protein_coding
description:
  Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Bphy_0123
symbol: Bphy_0123
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0102; KEGG: bxe:Bxe_A4313 protein of unknown function UPF0102; Belongs to the UPF0102 family.


ensembl_gene_id: Bphy_0124
symbol: gmhA
gene_biotype: protein_coding
description:
  Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.


ensembl_gene_id: Bphy_0125
symbol: Bphy_0125
gene_biotype: protein_coding
description:
  PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bxe:Bxe_A4311 periplasmic phospholipid binding protein.


ensembl_gene_id: Bphy_0129
symbol: Bphy_0129
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: afw:Anae109_0799 anti-sigma-factor antagonist.


ensembl_gene_id: Bphy_0130
symbol: Bphy_0130
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: aba:Acid345_2415 anti-sigma-factor antagonist.


ensembl_gene_id: Bphy_0131
symbol: Bphy_0131
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; KEGG: aba:Acid345_2414 putative anti-sigma regulatory factor, serine/threonine protein kinase.


ensembl_gene_id: Bphy_0132
symbol: Bphy_0132
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sus:Acid_0530 putative anti-sigma regulatory factor, serine/threonine protein kinase.


ensembl_gene_id: Bphy_0133
symbol: Bphy_0133
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sus:Acid_0531 histidine kinase.


ensembl_gene_id: Bphy_0134
symbol: Bphy_0134
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mxa:MXAN_0229 sensor histidine kinase/response regulator.


ensembl_gene_id: Bphy_0135
symbol: Bphy_0135
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: bxe:Bxe_B0221 multi-sensor hybrid histidine kinase.


ensembl_gene_id: Bphy_0137
symbol: Bphy_0137
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rme:Rmet_3683 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Bphy_0138
symbol: Bphy_0138
gene_biotype: protein_coding
description:
  TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bxe:Bxe_A4294 nucleobase/cation symporter, (NCS2) family.


ensembl_gene_id: Bphy_0139
symbol: Bphy_0139
gene_biotype: protein_coding
description:
  Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: Bphy_0140
symbol: Bphy_0140
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: bxe:Bxe_A4292 putative diguanylate phosphodiesterase (EAL domain).


ensembl_gene_id: Bphy_0143
symbol: Bphy_0143
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: bxe:Bxe_A4290 putative indolepyruvate ferredoxin oxidoreductase alpha and beta subunits.


ensembl_gene_id: Bphy_0144
symbol: Bphy_0144
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_2990 glutathione S-transferase, N-terminal domain.


ensembl_gene_id: Bphy_0145
symbol: Bphy_0145
gene_biotype: protein_coding
description:
  PFAM: Ion transport 2 domain protein; K channel inward rectifier conserved region 2 domain protein; KEGG: bur:Bcep18194_A6296 K+ channel, inward rectifier.


ensembl_gene_id: Bphy_0150
symbol: Bphy_0150
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A4284 transcriptional regulator, LacI family.


ensembl_gene_id: Bphy_0151
symbol: Bphy_0151
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: bxe:Bxe_A4283 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains).


ensembl_gene_id: Bphy_0152
symbol: Bphy_0152
gene_biotype: protein_coding
description:
  PFAM: Bile acid:sodium symporter; KEGG: bxe:Bxe_A4282 putative sodium/bile acid symporter family protein.


ensembl_gene_id: Bphy_0155
symbol: Bphy_0155
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A4278 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_0156
symbol: icmF
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.


ensembl_gene_id: Bphy_0159
symbol: Bphy_0159
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; KEGG: bpd:BURPS668_0348 transcriptional regulator, AsnC family.


ensembl_gene_id: Bphy_0160
symbol: Bphy_0160
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bch:Bcen2424_2962 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: Bphy_0161
symbol: Bphy_0161
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_A4274 putative metallo-beta-lactamase superfamily protein.


ensembl_gene_id: Bphy_0166
symbol: Bphy_0166
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bxe:Bxe_A4269 putative 2-hydroxyacid dehydrogenase.


ensembl_gene_id: Bphy_0169
symbol: Bphy_0169
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_A4267 putative ABC sulfate transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0170
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: Bphy_0171
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: Bphy_0172
symbol: bioF
gene_biotype: protein_coding
description:
  8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.


ensembl_gene_id: Bphy_0173
symbol: Bphy_0173
gene_biotype: protein_coding
description:
  TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: bxe:Bxe_A4263 adenosylmethionine--8-amino-7- oxononanoateaminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Bphy_0176
symbol: Bphy_0176
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bxe:Bxe_A4257 putative acyl-CoA dehydrogenase.


ensembl_gene_id: Bphy_0177
symbol: Bphy_0177
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_A4256 putative short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Bphy_0178
symbol: Bphy_0178
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A4255 putative acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Bphy_0180
symbol: aceK
gene_biotype: protein_coding
description:
  (Isocitrate dehydrogenase (NADP(+))) kinase; Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation.


ensembl_gene_id: Bphy_0181
symbol: Bphy_0181
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bxe:Bxe_A4252 transcriptional regulator, MerR family.


ensembl_gene_id: Bphy_0183
symbol: Bphy_0183
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bxe:Bxe_A4250 putative ABC peptide transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0184
symbol: Bphy_0184
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: bxe:Bxe_A4249 putative ABC Fe+3/siderophore transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0185
symbol: Bphy_0185
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A4248 putative short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Bphy_0190
symbol: Bphy_0190
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: Bphy_0191
symbol: Bphy_0191
gene_biotype: protein_coding
description:
  PFAM: homocysteine S-methyltransferase; KEGG: bxe:Bxe_A4240 putative homocysteine S-methyltransferase.


ensembl_gene_id: Bphy_0195
symbol: Bphy_0195
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bxe:Bxe_A4236 transcriptional regulator, IclR family.


ensembl_gene_id: Bphy_0196
symbol: Bphy_0196
gene_biotype: protein_coding
description:
  PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bxe:Bxe_A4235 putative fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: Bphy_0197
symbol: Bphy_0197
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A4234 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0198
symbol: Bphy_0198
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A4233 putative enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Bphy_0201
symbol: Bphy_0201
gene_biotype: protein_coding
description:
  rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.


ensembl_gene_id: Bphy_0203
symbol: coaX
gene_biotype: protein_coding
description:
  Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.


ensembl_gene_id: Bphy_0204
symbol: Bphy_0204
gene_biotype: protein_coding
description:
  TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: bxe:Bxe_A4226 biotin--acetyl-CoA-carboxylase ligase.


ensembl_gene_id: Bphy_0205
symbol: Bphy_0205
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF140; KEGG: bxe:Bxe_A4225 putative ABC transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0206
symbol: Bphy_0206
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A4224 ABC transporter, ATPase subunit.


ensembl_gene_id: Bphy_0207
symbol: Bphy_0207
gene_biotype: protein_coding
description:
  PFAM: Mammalian cell entry related domain protein; KEGG: bxe:Bxe_A4223 ABC transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0212
symbol: Bphy_0212
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: bxe:Bxe_A4218 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.


ensembl_gene_id: Bphy_0213
symbol: Bphy_0213
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF493; KEGG: bur:Bcep18194_A6234 hypothetical protein; Belongs to the UPF0250 family.


ensembl_gene_id: Bphy_0214
symbol: Bphy_0214
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A4215 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_0216
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: Bphy_0217
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: Bphy_0218
symbol: Bphy_0218
gene_biotype: protein_coding
description:
  TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: bxe:Bxe_A4205 Na+/phosphate symporter.


ensembl_gene_id: Bphy_0219
symbol: Bphy_0219
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: bxe:Bxe_A4204 transcriptional regulator, DeoR family.


ensembl_gene_id: Bphy_0220
symbol: Bphy_0220
gene_biotype: protein_coding
description:
  PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bxe:Bxe_A4202 glycerophosphodiester phosphodiesterase.


ensembl_gene_id: Bphy_0221
symbol: Bphy_0221
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_A4201 ABC polyamine/opine/phosphonate transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0222
symbol: Bphy_0222
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A4200 ABC spermidine/putrescine transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0223
symbol: Bphy_0223
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A4199 ABC spermidine/putrescine transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0224
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Bphy_0225
symbol: dctA
gene_biotype: protein_coding
description:
  Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: Bphy_0226
symbol: Bphy_0226
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A4196 histidine kinase.


ensembl_gene_id: Bphy_0227
symbol: Bphy_0227
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A4195 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, fis family.


ensembl_gene_id: Bphy_0228
symbol: Bphy_0228
gene_biotype: protein_coding
description:
  Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bxe:Bxe_A4194 putative thiol-disulfide isomerase and thioredoxins.


ensembl_gene_id: Bphy_0230
symbol: Bphy_0230
gene_biotype: protein_coding
description:
  Mg chelatase, subunit ChlI; KEGG: bxe:Bxe_A4192 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.


ensembl_gene_id: Bphy_0237
symbol: Bphy_0237
gene_biotype: protein_coding
description:
  PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein.


ensembl_gene_id: Bphy_0240
symbol: Bphy_0240
gene_biotype: protein_coding
description:
  Helicase superfamily 1 and 2 ATP-binding; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: rpe:RPE_2167 DEAD/DEAH box helicase domain protein.


ensembl_gene_id: Bphy_0241
symbol: Bphy_0241
gene_biotype: protein_coding
description:
  Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: bxe:Bxe_A2662 phage transcriptional regulator, AlpA.


ensembl_gene_id: Bphy_0242
symbol: Bphy_0242
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: yen:YE1170 putative integrase/recombinase protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Bphy_0249
symbol: Bphy_0249
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: slo:Shew_1266 transcriptional regulator, XRE family.


ensembl_gene_id: Bphy_0252
symbol: Bphy_0252
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pde:Pden_2403 transcriptional regulator, XRE family.


ensembl_gene_id: Bphy_0256
symbol: Bphy_0256
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: bxe:Bxe_A4190 nitrogen regulatory protein P-II (GlnB, GlnK); Belongs to the P(II) protein family.


ensembl_gene_id: Bphy_0257
symbol: Bphy_0257
gene_biotype: protein_coding
description:
  TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bxe:Bxe_A4189 ammonium transporter.


ensembl_gene_id: Bphy_0258
symbol: Bphy_0258
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: bxe:Bxe_A4188 putative glutamate-cysteine ligase.


ensembl_gene_id: Bphy_0259
symbol: gshB
gene_biotype: protein_coding
description:
  KEGG: bur:Bcep18194_A6192 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: Bphy_0260
symbol: Bphy_0260
gene_biotype: protein_coding
description:
  PFAM: PTS system fructose subfamily IIA component; KEGG: bxe:Bxe_A4186 putative sugar transport PTS system IIa component.


ensembl_gene_id: Bphy_0262
symbol: Bphy_0262
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: Bphy_0263
symbol: Bphy_0263
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: bxe:Bxe_A4183 putative molybdopterin biosynthesis protein.


ensembl_gene_id: Bphy_0264
symbol: Bphy_0264
gene_biotype: protein_coding
description:
  Carboxyl-terminal protease; KEGG: bxe:Bxe_A4182 peptidase S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.


ensembl_gene_id: Bphy_0266
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: Bphy_0268
symbol: Bphy_0268
gene_biotype: protein_coding
description:
  Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: Bphy_0269
symbol: secB
gene_biotype: protein_coding
description:
  Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: Bphy_0270
symbol: gpsA
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bxe:Bxe_A4177 glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Bphy_0272
symbol: trmL
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 2; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: Bphy_0274
symbol: bioC
gene_biotype: protein_coding
description:
  Methyltransferase type 11; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.


ensembl_gene_id: Bphy_0276
symbol: Bphy_0276
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: Bphy_0277
symbol: Bphy_0277
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: Bphy_0279
symbol: Bphy_0279
gene_biotype: protein_coding
description:
  PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: bxe:Bxe_A4169 putative cytochrome c oxidase assembly protein.


ensembl_gene_id: Bphy_0285
symbol: Bphy_0285
gene_biotype: protein_coding
description:
  PFAM: cytochrome oxidase assembly; KEGG: bxe:Bxe_A4163 putative cytochrome oxidase assembly protein.


ensembl_gene_id: Bphy_0286
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: Bphy_0287
symbol: Bphy_0287
gene_biotype: protein_coding
description:
  Electron transport protein SCO1/SenC; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: bxe:Bxe_A4161 electron transport protein SCO1/SenC.


ensembl_gene_id: Bphy_0289
symbol: Bphy_0289
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bxe:Bxe_A4159 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Bphy_0290
symbol: Bphy_0290
gene_biotype: protein_coding
description:
  TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bxe:Bxe_A4158 ABC transporter, periplasmic ligand binding protein, YaeC family; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: Bphy_0291
symbol: Bphy_0291
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: bxe:Bxe_A4157 transcriptional regulator, MarR family with acetyltransferase activity.


ensembl_gene_id: Bphy_0292
symbol: Bphy_0292
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bxe:Bxe_A4156 transcriptional regulator, GntR family.


ensembl_gene_id: Bphy_0293
symbol: Bphy_0293
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A4155 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.


ensembl_gene_id: Bphy_0294
symbol: Bphy_0294
gene_biotype: protein_coding
description:
  PFAM: sugar isomerase (SIS); KEGG: bxe:Bxe_A4154 glutamine-fructose-6-phosphate transaminase(isomerizing).


ensembl_gene_id: Bphy_0295
symbol: Bphy_0295
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: PTS system, glucose subfamily, IIA subunit; phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; sugar-specific permease EIIA 1 domain; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: bxe:Bxe_A4153 PTS system, sugar-specific EIIA/HPr/EI components; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Bphy_0296
symbol: Bphy_0296
gene_biotype: protein_coding
description:
  TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: bxe:Bxe_A4152 PTS system, N-acetylglucosamine-specific IIBC component.


ensembl_gene_id: Bphy_0297
symbol: Bphy_0297
gene_biotype: protein_coding
description:
  TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: bte:BTH_I2310 cyd operon protein YbgT, putative.


ensembl_gene_id: Bphy_0298
symbol: Bphy_0298
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A4149 cytochrome bd ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.


ensembl_gene_id: Bphy_0299
symbol: Bphy_0299
gene_biotype: protein_coding
description:
  PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bxe:Bxe_A1908 cytochrome bd ubiquinol oxidase, subunit I.


ensembl_gene_id: Bphy_0301
symbol: rpoH
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: Bphy_0302
symbol: Bphy_0302
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.


ensembl_gene_id: Bphy_0304
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: Bphy_0306
symbol: Bphy_0306
gene_biotype: protein_coding
description:
  PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bxe:Bxe_A4142 putative fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: Bphy_0307
symbol: Bphy_0307
gene_biotype: protein_coding
description:
  TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: bxe:Bxe_A4141 maleylacetoacetate isomerase (HmgC).


ensembl_gene_id: Bphy_0308
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: Bphy_0309
symbol: Bphy_0309
gene_biotype: protein_coding
description:
  TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: bxe:Bxe_A4139 conserved hypothetical protein 95.


ensembl_gene_id: Bphy_0310
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: Bphy_0312
symbol: hisC
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A4136 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Bphy_0313
symbol: pth
gene_biotype: protein_coding
description:
  Aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: Bphy_0314
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: Bphy_0315
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Bphy_0316
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: Bphy_0317
symbol: Bphy_0317
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.


ensembl_gene_id: Bphy_0318
symbol: Bphy_0318
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_A4130 hypothetical protein.


ensembl_gene_id: Bphy_0319
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: Bphy_0323
symbol: hprK
gene_biotype: protein_coding
description:
  HPr kinase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).


ensembl_gene_id: Bphy_0324
symbol: Bphy_0324
gene_biotype: protein_coding
description:
  Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bxe:Bxe_A4124 PTS IIA-like nitrogen-regulatory protein PtsN.


ensembl_gene_id: Bphy_0325
symbol: Bphy_0325
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bxe:Bxe_A4123 sigma 54 modulation protein/ribosomal protein S30EA.


ensembl_gene_id: Bphy_0326
symbol: Bphy_0326
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Bphy_0327
symbol: Bphy_0327
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A4121 ABC transporter, ATPase subunit.


ensembl_gene_id: Bphy_0328
symbol: lptA
gene_biotype: protein_coding
description:
  Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.


ensembl_gene_id: Bphy_0330
symbol: Bphy_0330
gene_biotype: protein_coding
description:
  TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: bxe:Bxe_A4118 phosphatase YrbI.


ensembl_gene_id: Bphy_0331
symbol: Bphy_0331
gene_biotype: protein_coding
description:
  KpsF/GutQ family protein; KEGG: bxe:Bxe_A4117 KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: Bphy_0332
symbol: Bphy_0332
gene_biotype: protein_coding
description:
  Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: bxe:Bxe_A4116 putative glutathione-regulated potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: Bphy_0333
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: Bphy_0334
symbol: Bphy_0334
gene_biotype: protein_coding
description:
  PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bur:Bcep18194_A6113 lysine exporter family protein (LysE/YggA).


ensembl_gene_id: Bphy_0335
symbol: Bphy_0335
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: bxe:Bxe_A4113 putative NTP pyrophosphohydrolases including oxidative damage repair enzymes.


ensembl_gene_id: Bphy_0336
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: Bphy_0339
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: Bphy_0340
symbol: Bphy_0340
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4107 major facilitator superfamily (MFS) multidrug efflux pump.


ensembl_gene_id: Bphy_0341
symbol: Bphy_0341
gene_biotype: protein_coding
description:
  Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: Bphy_0342
symbol: Bphy_0342
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A3012 putative short-chain dehydrogenase.


ensembl_gene_id: Bphy_0343
symbol: Bphy_0343
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_II1156 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_0345
symbol: Bphy_0345
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bxe:Bxe_A4080 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Bphy_0348
symbol: Bphy_0348
gene_biotype: protein_coding
description:
  PFAM: cytochrome c oxidase subunit II; KEGG: bxe:Bxe_A4077 putative cytochrome c oxidase subunit II.


ensembl_gene_id: Bphy_0350
symbol: Bphy_0350
gene_biotype: protein_coding
description:
  Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: bxe:Bxe_A4075 putative cytochrome c precursor.


ensembl_gene_id: Bphy_0352
symbol: Bphy_0352
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A4073 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_0353
symbol: Bphy_0353
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4072 major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_0354
symbol: Bphy_0354
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_A4071 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Bphy_0355
symbol: Bphy_0355
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_A4070 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Bphy_0356
symbol: Bphy_0356
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_A4069 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Bphy_0357
symbol: Bphy_0357
gene_biotype: protein_coding
description:
  PFAM: major intrinsic protein; KEGG: bxe:Bxe_A4068 aquaporin Z; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: Bphy_0358
symbol: Bphy_0358
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A4067 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: extracellular solute-binding protein family 3.


ensembl_gene_id: Bphy_0362
symbol: Bphy_0362
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4062 major facilitator superfamily (MFS) multidrug efflux pump, EmrB/QacA subfamily.


ensembl_gene_id: Bphy_0365
symbol: Bphy_0365
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bxe:Bxe_A4059 transcriptional regulator, RpiR family.


ensembl_gene_id: Bphy_0366
symbol: Bphy_0366
gene_biotype: protein_coding
description:
  N-acyl-D-amino-acid deacylase; PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: bxe:Bxe_A4058 N-acyl-D-amino-acid deacylase.


ensembl_gene_id: Bphy_0368
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).


ensembl_gene_id: Bphy_0370
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine dehydratase, biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: Bphy_0371
symbol: Bphy_0371
gene_biotype: protein_coding
description:
  FAD linked oxidase domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: bxe:Bxe_A4053 putative oxidoreductase.


ensembl_gene_id: Bphy_0374
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: Bphy_0377
symbol: ubiB
gene_biotype: protein_coding
description:
  2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.


ensembl_gene_id: Bphy_0378
symbol: Bphy_0378
gene_biotype: protein_coding
description:
  PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bxe:Bxe_A4046 hypothetical protein.


ensembl_gene_id: Bphy_0379
symbol: Bphy_0379
gene_biotype: protein_coding
description:
  TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: bps:BPSL0642 hypothetical protein.


ensembl_gene_id: Bphy_0381
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: Bphy_0383
symbol: clsB
gene_biotype: protein_coding
description:
  Phospholipase D/Transphosphatidylase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: Bphy_0386
symbol: Bphy_0386
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bxe:Bxe_A4037 putative 3-hydroxyacyl-CoA dehydrogenase.


ensembl_gene_id: Bphy_0387
symbol: Bphy_0387
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: bxe:Bxe_A4036 thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Bphy_0389
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: Bphy_0391
symbol: Bphy_0391
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A4032 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: Bphy_0393
symbol: Bphy_0393
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A4027 ABC transporter, fused ATPase and inner membrane subunits.


ensembl_gene_id: Bphy_0396
symbol: lptD
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.


ensembl_gene_id: Bphy_0397
symbol: surA
gene_biotype: protein_coding
description:
  SurA domain protein; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.


ensembl_gene_id: Bphy_0398
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: Bphy_0399
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: Bphy_0401
symbol: Bphy_0401
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; KEGG: bxe:Bxe_A4018 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Bphy_0404
symbol: Bphy_0404
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: bte:BTH_I0583 HAD-superfamily hydrolase.


ensembl_gene_id: Bphy_0405
symbol: glyS
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A4013 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit.


ensembl_gene_id: Bphy_0406
symbol: glyQ
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A4012 glycyl-tRNA synthetase, alpha subunit; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit.


ensembl_gene_id: Bphy_0407
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: Bphy_0408
symbol: Bphy_0408
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; transporter-associated region; KEGG: bxe:Bxe_A0626 putative Mg2+ and Co2+ transporter, CorC family.


ensembl_gene_id: Bphy_0409
symbol: Bphy_0409
gene_biotype: protein_coding
description:
  ChaC family protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.


ensembl_gene_id: Bphy_0410
symbol: ybeY
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: Bphy_0412
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Bphy_0413
symbol: Bphy_0413
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A0631 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_0415
symbol: Bphy_0415
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0633 major facilitator family (MFS) transporter.


ensembl_gene_id: Bphy_0416
symbol: Bphy_0416
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bxe:Bxe_A0634 transcriptional regulator, XRE family.


ensembl_gene_id: Bphy_0417
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.


ensembl_gene_id: Bphy_0418
symbol: Bphy_0418
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_A0636 HAD-superfamily hydrolase, subfamily IA, variant3.


ensembl_gene_id: Bphy_0419
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: Bphy_0420
symbol: Bphy_0420
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_A0639 putative glycerol-3-phosphate dehydrogenase.


ensembl_gene_id: Bphy_0423
symbol: Bphy_0423
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: bxe:Bxe_A0643 transcriptional regulator, DeoR family.


ensembl_gene_id: Bphy_0426
symbol: rhlE
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.


ensembl_gene_id: Bphy_0427
symbol: Bphy_0427
gene_biotype: protein_coding
description:
  TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: bxe:Bxe_A0649 putative hemolysin HylII.


ensembl_gene_id: Bphy_0428
symbol: Bphy_0428
gene_biotype: protein_coding
description:
  Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: bxe:Bxe_A0650 putative periplasmic cytochrome c.


ensembl_gene_id: Bphy_0431
symbol: Bphy_0431
gene_biotype: protein_coding
description:
  PFAM: copper resistance D domain protein; KEGG: bxe:Bxe_A0653 putative copper-resistance transporter, CopD.


ensembl_gene_id: Bphy_0433
symbol: Bphy_0433
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bxe:Bxe_A0656 putative galactonate dehydratase.


ensembl_gene_id: Bphy_0434
symbol: Bphy_0434
gene_biotype: protein_coding
description:
  PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bxe:Bxe_A0657 transcriptional regulator, GntR family.


ensembl_gene_id: Bphy_0437
symbol: Bphy_0437
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0668 major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_0438
symbol: Bphy_0438
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: bxe:Bxe_A0669 signal transduction histidine kinases (STHK).


ensembl_gene_id: Bphy_0439
symbol: Bphy_0439
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bxe:Bxe_A0670 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Bphy_0440
symbol: recA
gene_biotype: protein_coding
description:
  recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Bphy_0443
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: Bphy_0444
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: Bphy_0447
symbol: Bphy_0447
gene_biotype: protein_coding
description:
  KEGG: rme:Rmet_0253 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); HNH endonuclease; Group II intron maturase-specific domain protein; SMART: HNH nuclease.


ensembl_gene_id: Bphy_0449
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: Bphy_0454
symbol: Bphy_0454
gene_biotype: protein_coding
description:
  TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A0684 putative ADP-heptose--LPS heptosyltransferaseII.


ensembl_gene_id: Bphy_0456
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Bphy_0459
symbol: pgk
gene_biotype: protein_coding
description:
  PFAM: phosphoglycerate kinase; KEGG: bxe:Bxe_A0689 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: Bphy_0460
symbol: Bphy_0460
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0690 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.


ensembl_gene_id: Bphy_0461
symbol: Bphy_0461
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: Bphy_0462
symbol: purC
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0692 SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.


ensembl_gene_id: Bphy_0463
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Bphy_0464
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Bphy_0465
symbol: Bphy_0465
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: Bphy_0468
symbol: Bphy_0468
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0698 peptidase S13, D-Ala-D-Ala carboxypeptidase C; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.


ensembl_gene_id: Bphy_0469
symbol: Bphy_0469
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bxe:Bxe_A0699 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Bphy_0470
symbol: Bphy_0470
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A0700 signal transduction histidine kinases (STHK).


ensembl_gene_id: Bphy_0471
symbol: Bphy_0471
gene_biotype: protein_coding
description:
  Protease Do; KEGG: bxe:Bxe_A0701 serine protease, subfamily S1C; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.


ensembl_gene_id: Bphy_0475
symbol: Bphy_0475
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bxe:Bxe_A0705 transcriptional regulator, AraC family.


ensembl_gene_id: Bphy_0477
symbol: Bphy_0477
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: bxe:Bxe_A0707 transcriptional regulator, TetR family.


ensembl_gene_id: Bphy_0478
symbol: Bphy_0478
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A0708 membrane fusion protein, RND efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Bphy_0479
symbol: Bphy_0479
gene_biotype: protein_coding
description:
  TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_A0709 RND family hydrophobe/amphiphile efflux pump.


ensembl_gene_id: Bphy_0480
symbol: Bphy_0480
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_A0710 RND efflux system, outer membrane lipoprotein, NodT subfamily.


ensembl_gene_id: Bphy_0481
symbol: Bphy_0481
gene_biotype: protein_coding
description:
  TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bxe:Bxe_A0711 xanthine/uracil - cation symporter, NCS2 family.


ensembl_gene_id: Bphy_0483
symbol: Bphy_0483
gene_biotype: protein_coding
description:
  TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_A0713 glutathione-dependent formaldehyde dehydrogenase(FlhA); Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.


ensembl_gene_id: Bphy_0486
symbol: Bphy_0486
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A0716 ABC Mn2+/Zn2+ transporter, ATPase subunit.


ensembl_gene_id: Bphy_0487
symbol: Bphy_0487
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: bxe:Bxe_A0717 ABC Mn2+/Zn2+ transporter, periplasmic ligand binding protein; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: Bphy_0488
symbol: fur
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bur:Bcep18194_A5930 ferric uptake regulator, FUR family; Belongs to the Fur family.


ensembl_gene_id: Bphy_0489
symbol: Bphy_0489
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A0719 putative oxidoreductase, short-chain dehydrogenase/reductase.


ensembl_gene_id: Bphy_0490
symbol: Bphy_0490
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_A0720 ABC sugar transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0491
symbol: Bphy_0491
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0721 ABC sugar transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0492
symbol: Bphy_0492
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0722 ABC sugar transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0493
symbol: Bphy_0493
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_A0723 HAD-superfamily hydrolase, subfamily IA, variant3.


ensembl_gene_id: Bphy_0494
symbol: Bphy_0494
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A0724 ABC sugar transporter, ATPase subunit.


ensembl_gene_id: Bphy_0495
symbol: Bphy_0495
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_A0190 TPR repeat protein.


ensembl_gene_id: Bphy_0496
symbol: Bphy_0496
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: bxe:Bxe_A0728 putative transcriptional regulator.


ensembl_gene_id: Bphy_0498
symbol: Bphy_0498
gene_biotype: protein_coding
description:
  PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: bxe:Bxe_A0730 putative D-arabinitol 4-dehydrogenase.


ensembl_gene_id: Bphy_0499
symbol: Bphy_0499
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bte:BTH_I2436 transcriptional regulator, AraC family.


ensembl_gene_id: Bphy_0500
symbol: Bphy_0500
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_4201 periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Bphy_0501
symbol: rbsA
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.


ensembl_gene_id: Bphy_0502
symbol: Bphy_0502
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bur:Bcep18194_B0886 ABC sugar transporter, inner-membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_0503
symbol: Bphy_0503
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_4198 alcohol dehydrogenase GroES domain protein.


ensembl_gene_id: Bphy_0504
symbol: Bphy_0504
gene_biotype: protein_coding
description:
  Xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bam:Bamb_4197 xylulokinase; Belongs to the FGGY kinase family.


ensembl_gene_id: Bphy_0505
symbol: Bphy_0505
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bte:BTH_I2430 oxidoreductase, short chain dehydrogenase/reductase family.


ensembl_gene_id: Bphy_0506
symbol: kynA
gene_biotype: protein_coding
description:
  Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.


ensembl_gene_id: Bphy_0507
symbol: kynU
gene_biotype: protein_coding
description:
  Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: Bphy_0508
symbol: kynB
gene_biotype: protein_coding
description:
  Arylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.


ensembl_gene_id: Bphy_0509
symbol: Bphy_0509
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; KEGG: bxe:Bxe_A0736 transcriptional regulator, AsnC family.


ensembl_gene_id: Bphy_0510
symbol: Bphy_0510
gene_biotype: protein_coding
description:
  PFAM: flavin reductase domain protein FMN-binding; KEGG: bxe:Bxe_A0737 putative flavin reductase-like protein.


ensembl_gene_id: Bphy_0511
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: Bphy_0513
symbol: Bphy_0513
gene_biotype: protein_coding
description:
  PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bxe:Bxe_A0740 cyclopropane-fatty-acyl-phospholipid synthase.


ensembl_gene_id: Bphy_0514
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: Bphy_0518
symbol: Bphy_0518
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A0745 drug/metabolite efflux pump, DME (10TM) family, DMT superfamily.


ensembl_gene_id: Bphy_0519
symbol: Bphy_0519
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: bxe:Bxe_A0746 N-acetylmuramoyl-L-alanine amidase.


ensembl_gene_id: Bphy_0521
symbol: queG
gene_biotype: protein_coding
description:
  Iron-sulfur cluster binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: Bphy_0522
symbol: Bphy_0522
gene_biotype: protein_coding
description:
  TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bxe:Bxe_A0749 methylated-DNA-(protein)-cysteine S-methyltransferase.


ensembl_gene_id: Bphy_0523
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Bphy_0525
symbol: Bphy_0525
gene_biotype: protein_coding
description:
  TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bxe:Bxe_A0752 hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: Bphy_0526
symbol: plsY
gene_biotype: protein_coding
description:
  Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: Bphy_0527
symbol: Bphy_0527
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF520; KEGG: bam:Bamb_2603 protein of unknown function DUF520; Belongs to the UPF0234 family.


ensembl_gene_id: Bphy_0529
symbol: Bphy_0529
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: Bphy_0532
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: Bphy_0534
symbol: Bphy_0534
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A0762 3-hydroxyacyl-CoA dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Bphy_0535
symbol: adk
gene_biotype: protein_coding
description:
  Nucleoside-triphosphate--adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: Bphy_0536
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: Bphy_0537
symbol: Bphy_0537
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF343; KEGG: bxe:Bxe_A0765 hypothetical protein; Belongs to the UPF0434 family.


ensembl_gene_id: Bphy_0538
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: Bphy_0539
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: Bphy_0540
symbol: Bphy_0540
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: Bphy_0544
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Bphy_0545
symbol: Bphy_0545
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_A0777 sigma-24 (FecI).


ensembl_gene_id: Bphy_0546
symbol: Bphy_0546
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: bxe:Bxe_A0778 putative diguanylate phosphodiesterase (EAL domain).


ensembl_gene_id: Bphy_0547
symbol: Bphy_0547
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0779 MFS drug efflux pump, EmrB/QacA subfamily.


ensembl_gene_id: Bphy_0548
symbol: Bphy_0548
gene_biotype: protein_coding
description:
  PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bxe:Bxe_A0780 bifunctional --transcriptional regulator, GntR family / aminotransferase, class I and II.


ensembl_gene_id: Bphy_0550
symbol: Bphy_0550
gene_biotype: protein_coding
description:
  Citrate synthase; PFAM: regulatory protein MerR; Citrate synthase; KEGG: bxe:Bxe_A0781 bifunctional --transcriptional regulator, MerR family / citrate synthase.


ensembl_gene_id: Bphy_0551
symbol: Bphy_0551
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A0782 putative CoA transferase family protein; Belongs to the CoA-transferase III family.


ensembl_gene_id: Bphy_0552
symbol: Bphy_0552
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bxe:Bxe_A0783 transcriptional regulator, GntR family.


ensembl_gene_id: Bphy_0555
symbol: Bphy_0555
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0787 ABC oligopeptide/dipeptide transporter, fused ATPase subunits; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Bphy_0556
symbol: Bphy_0556
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0788 ABC oligopeptide/dipeptide transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0557
symbol: Bphy_0557
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0789 ABC oligopeptide/dipeptide transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0558
symbol: Bphy_0558
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bxe:Bxe_A0790 ABC oligopeptide/dipeptide transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0559
symbol: Bphy_0559
gene_biotype: protein_coding
description:
  TIGRFAM: high-affinity nickel-transporter; KEGG: bxe:Bxe_A0791 high-affinity nickel-transporter, (NiCoT) family; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: Bphy_0560
symbol: Bphy_0560
gene_biotype: protein_coding
description:
  PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: bxe:Bxe_A0792 hypothetical protein.


ensembl_gene_id: Bphy_0561
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: Bphy_0564
symbol: Bphy_0564
gene_biotype: protein_coding
description:
  PFAM: pseudouridine synthase; KEGG: bxe:Bxe_A0796 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Bphy_0565
symbol: Bphy_0565
gene_biotype: protein_coding
description:
  TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: bxe:Bxe_A0797 isocitrate dehydrogenase NADP-dependent, proktype.


ensembl_gene_id: Bphy_0567
symbol: Bphy_0567
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0798 cold-shock DNA-binding domain protein; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Bphy_0568
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: Bphy_0569
symbol: Bphy_0569
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0801 putative ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Bphy_0570
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: Bphy_0572
symbol: Bphy_0572
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: Bphy_0573
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: Bphy_0574
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: Bphy_0575
symbol: Bphy_0575
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain protein; PFAM: FAD synthetase; Riboflavin kinase; KEGG: bxe:Bxe_A0808 riboflavin kinase / FAD synthetase; Belongs to the ribF family.


ensembl_gene_id: Bphy_0576
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: Bphy_0577
symbol: Bphy_0577
gene_biotype: protein_coding
description:
  PFAM: Fmu (Sun) domain protein; KEGG: bxe:Bxe_A0810 NOL1/NOP2/Sun family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: Bphy_0578
symbol: Bphy_0578
gene_biotype: protein_coding
description:
  PFAM: MscS Mechanosensitive ion channel; KEGG: bxe:Bxe_A0811 small-conductance mechanosensitive channel, MscS family.


ensembl_gene_id: Bphy_0580
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily.


ensembl_gene_id: Bphy_0581
symbol: Bphy_0581
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0814 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.


ensembl_gene_id: Bphy_0583
symbol: rpmG
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L33; KEGG: bte:BTH_I0779 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Bphy_0584
symbol: rpmB
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L28; KEGG: bte:BTH_I0780 ribosomal protein L28, putative; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Bphy_0585
symbol: Bphy_0585
gene_biotype: protein_coding
description:
  PFAM: DNA repair protein RadC; KEGG: bte:BTH_I0781 DNA repair protein RadC; Belongs to the UPF0758 family.


ensembl_gene_id: Bphy_0586
symbol: Bphy_0586
gene_biotype: protein_coding
description:
  PFAM: peptidylprolyl isomerase FKBP-type; KEGG: bxe:Bxe_A0819 putative FkpB-type peptidyl-prolyl cis-transisomerase.


ensembl_gene_id: Bphy_0587
symbol: ispH
gene_biotype: protein_coding
description:
  Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: Bphy_0588
symbol: Bphy_0588
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A0821 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0589
symbol: Bphy_0589
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A0822 ABC branched chain amino acid family transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_0590
symbol: Bphy_0590
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bvi:Bcep1808_4329 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_0594
symbol: argD
gene_biotype: protein_coding
description:
  TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: bxe:Bxe_A0827 acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: Bphy_0596
symbol: Bphy_0596
gene_biotype: protein_coding
description:
  PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bxe:Bxe_A0829 putative ferredoxin--NAD(+) oxidoreductase.


ensembl_gene_id: Bphy_0597
symbol: Bphy_0597
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; TrkA-N domain protein; KEGG: bxe:Bxe_A0830 hypothetical protein.


ensembl_gene_id: Bphy_0599
symbol: Bphy_0599
gene_biotype: protein_coding
description:
  Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bxe:Bxe_A0832 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Bphy_0602
symbol: Bphy_0602
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0855 oxygen-independent coproporphyrinogen III oxidase HemN; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Bphy_0605
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Bphy_0606
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: Bphy_0613
symbol: Bphy_0613
gene_biotype: protein_coding
description:
  PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bxe:Bxe_A0887 homoserine/homoserine lactone/threonine efflux pump, RhtB family.


ensembl_gene_id: Bphy_0614
symbol: ubiD
gene_biotype: protein_coding
description:
  UbiD family decarboxylase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.


ensembl_gene_id: Bphy_0615
symbol: Bphy_0615
gene_biotype: protein_coding
description:
  PFAM: Lytic transglycosylase catalytic; KEGG: bxe:Bxe_A0889 putative transglycosylase SLT domain lipoprotein.


ensembl_gene_id: Bphy_0617
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Bphy_0618
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Bphy_0619
symbol: ribB-2
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: Bphy_0620
symbol: Bphy_0620
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: bxe:Bxe_A0894 lumazine-binding protein.


ensembl_gene_id: Bphy_0621
symbol: Bphy_0621
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: Bphy_0622
symbol: hemL
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: bxe:Bxe_A0896 glutamate-1-semialdehyde-2,1-aminomutase.


ensembl_gene_id: Bphy_0624
symbol: Bphy_0624
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0898 major facilitator superfamily (MFS) multidrug efflux pump, Bcr/CflA subfamily.


ensembl_gene_id: Bphy_0625
symbol: glk
gene_biotype: protein_coding
description:
  Glucokinase; KEGG: bxe:Bxe_A3454 glucokinase; TIGRFAM: glucokinase; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); Glucokinase; Belongs to the bacterial glucokinase family.


ensembl_gene_id: Bphy_0627
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: Bphy_0628
symbol: Bphy_0628
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_A3451 ABC sugar (maltose) transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0629
symbol: Bphy_0629
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A3450 ABC sugar transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0630
symbol: Bphy_0630
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpd:BURPS668_2995 ABC transporter, carbohydrate uptake transporter-1 (CUT1) family, permease protein.


ensembl_gene_id: Bphy_0631
symbol: Bphy_0631
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A3448 ABC sugar transporter, ATPase subunit.


ensembl_gene_id: Bphy_0634
symbol: Bphy_0634
gene_biotype: protein_coding
description:
  TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_A3442 thioredoxin reductase.


ensembl_gene_id: Bphy_0636
symbol: lolA
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: Bphy_0637
symbol: Bphy_0637
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A3439 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_0638
symbol: Bphy_0638
gene_biotype: protein_coding
description:
  TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: bxe:Bxe_A3438 putative agmatinase; Belongs to the arginase family.


ensembl_gene_id: Bphy_0639
symbol: Bphy_0639
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_B0911 TPR domain protein.


ensembl_gene_id: Bphy_0640
symbol: Bphy_0640
gene_biotype: protein_coding
description:
  TIGRFAM: hydroxymethylpyrimidine transporter CytX; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bxe:Bxe_A3437 nucleobase/cation symporter, (NCS1) family; Belongs to the purine-cytosine permease (2.A.39) family.


ensembl_gene_id: Bphy_0642
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: Bphy_0644
symbol: Bphy_0644
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_3712 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: Bphy_0645
symbol: Bphy_0645
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sfu:Sfum_0943 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Bphy_0646
symbol: Bphy_0646
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: rme:Rmet_1699 response regulator receiver domain protein (CheY-like).


ensembl_gene_id: Bphy_0647
symbol: Bphy_0647
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_B1229 RND efflux pump, membrane fusion protein, CzcB subfamily; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Bphy_0648
symbol: Bphy_0648
gene_biotype: protein_coding
description:
  TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_B1230 hydrophobe/amphiphile efflux pump, RND family.


ensembl_gene_id: Bphy_0649
symbol: Bphy_0649
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_B1231 RND efflux system, outer membrane lipoprotein, NodT family.


ensembl_gene_id: Bphy_0650
symbol: Bphy_0650
gene_biotype: protein_coding
description:
  TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: rme:Rmet_4089 hypothetical protein.


ensembl_gene_id: Bphy_0651
symbol: Bphy_0651
gene_biotype: protein_coding
description:
  PFAM: Mammalian cell entry related domain protein; KEGG: rme:Rmet_4088 mammalian cell entry related.


ensembl_gene_id: Bphy_0653
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Bphy_0655
symbol: minC
gene_biotype: protein_coding
description:
  Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: Bphy_0656
symbol: Bphy_0656
gene_biotype: protein_coding
description:
  TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bxe:Bxe_A3424 septum site-determining protein MinD.


ensembl_gene_id: Bphy_0657
symbol: minE
gene_biotype: protein_coding
description:
  Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.


ensembl_gene_id: Bphy_0661
symbol: Bphy_0661
gene_biotype: protein_coding
description:
  TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A3421 putative lipopolysaccharide heptosyltransferase-1.


ensembl_gene_id: Bphy_0663
symbol: Bphy_0663
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A3419 major facilitator superfamily (MFS) metabolite/H+ symporter.


ensembl_gene_id: Bphy_0665
symbol: Bphy_0665
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Bphy_0666
symbol: Bphy_0666
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: Bphy_0667
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: Bphy_0668
symbol: Bphy_0668
gene_biotype: protein_coding
description:
  PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: bxe:Bxe_A0904 conserved hypothetical protein 255.


ensembl_gene_id: Bphy_0670
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: Bphy_0671
symbol: Bphy_0671
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: Bphy_0673
symbol: greB
gene_biotype: protein_coding
description:
  Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.


ensembl_gene_id: Bphy_0676
symbol: Bphy_0676
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bxe:Bxe_A0913 putative cold-shock DNA-binding domain protein.


ensembl_gene_id: Bphy_0677
symbol: Bphy_0677
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0914 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.


ensembl_gene_id: Bphy_0678
symbol: Bphy_0678
gene_biotype: protein_coding
description:
  TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: bxe:Bxe_A0915 periplasmic chorismate mutase.


ensembl_gene_id: Bphy_0682
symbol: Bphy_0682
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0973 transcriptional regulator, LysR-family.


ensembl_gene_id: Bphy_0683
symbol: Bphy_0683
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B0974 predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.


ensembl_gene_id: Bphy_0684
symbol: Bphy_0684
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reh:H16_B0975 acyl-CoA dehydrogenase.


ensembl_gene_id: Bphy_0685
symbol: fbp1
gene_biotype: protein_coding
description:
  PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: bxe:Bxe_A0920 inositolphosphatase/fructose-1,6-bisphosphatase.


ensembl_gene_id: Bphy_0686
symbol: Bphy_0686
gene_biotype: protein_coding
description:
  TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: bxe:Bxe_A0923 peptidase M1, alanyl aminopeptidase.


ensembl_gene_id: Bphy_0692
symbol: acpP
gene_biotype: protein_coding
description:
  Phosphopantetheine-binding; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: Bphy_0694
symbol: Bphy_0694
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bxe:Bxe_A0931 putative AMP-dependent synthetase and ligase.


ensembl_gene_id: Bphy_0698
symbol: Bphy_0698
gene_biotype: protein_coding
description:
  Conserved hypothetical signal peptide protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: Bphy_0700
symbol: Bphy_0700
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: bxe:Bxe_A0937 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Bphy_0701
symbol: Bphy_0701
gene_biotype: protein_coding
description:
  PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bxe:Bxe_A0938 hypothetical protein.


ensembl_gene_id: Bphy_0702
symbol: Bphy_0702
gene_biotype: protein_coding
description:
  TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A0939 3-oxoacyl-(acyl-carrier-protein) reductase.


ensembl_gene_id: Bphy_0703
symbol: Bphy_0703
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: bxe:Bxe_A0940 3-oxoacyl-(acyl-carrier-protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Bphy_0704
symbol: Bphy_0704
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: bxe:Bxe_A0941 3-oxoacyl-(acyl-carrier-protein) synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Bphy_0707
symbol: Bphy_0707
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: putative methyltransferase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bxe:Bxe_A0944 hypothetical protein.


ensembl_gene_id: Bphy_0708
symbol: Bphy_0708
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: bxe:Bxe_A0945 putative oxidoreductase.


ensembl_gene_id: Bphy_0709
symbol: Bphy_0709
gene_biotype: protein_coding
description:
  Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.


ensembl_gene_id: Bphy_0710
symbol: Bphy_0710
gene_biotype: protein_coding
description:
  Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.


ensembl_gene_id: Bphy_0711
symbol: Bphy_0711
gene_biotype: protein_coding
description:
  TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: bxe:Bxe_A0948 putative xanthine dehydrogenase maturation factor, XdhC.


ensembl_gene_id: Bphy_0712
symbol: Bphy_0712
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A0949 xanthine dehydrogenase, subunit B; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.


ensembl_gene_id: Bphy_0713
symbol: Bphy_0713
gene_biotype: protein_coding
description:
  TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: bxe:Bxe_A0950 xanthine dehydrogenase, subunit A.


ensembl_gene_id: Bphy_0714
symbol: dsbB
gene_biotype: protein_coding
description:
  Disulphide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.


ensembl_gene_id: Bphy_0717
symbol: Bphy_0717
gene_biotype: protein_coding
description:
  Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: bte:BTH_I1617 glutamine amidotransferase, class I.


ensembl_gene_id: Bphy_0721
symbol: Bphy_0721
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0958 major facilitator superfamily (MFS) citrate/H+ symporter.


ensembl_gene_id: Bphy_0722
symbol: Bphy_0722
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_A0959 hypothetical protein.


ensembl_gene_id: Bphy_0724
symbol: Bphy_0724
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bxe:Bxe_A0961 cation (heavy metal) efflux pump, CDF family.


ensembl_gene_id: Bphy_0727
symbol: Bphy_0727
gene_biotype: protein_coding
description:
  TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bxe:Bxe_A0964 NAD-dependent formate dehydrogenase, alpha subunit.


ensembl_gene_id: Bphy_0728
symbol: Bphy_0728
gene_biotype: protein_coding
description:
  PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: bxe:Bxe_A0965 NAD-dependent formate dehydrogenase, beta subunit.


ensembl_gene_id: Bphy_0730
symbol: Bphy_0730
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LysR; KEGG: bxe:Bxe_A0967 transcriptional regulator of molybdate metabolism, LysR family.


ensembl_gene_id: Bphy_0735
symbol: Bphy_0735
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_A0971 2-phosphoglycolate phosphatase.


ensembl_gene_id: Bphy_0736
symbol: ubiG
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: Bphy_0738
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Bphy_0740
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: Bphy_0741
symbol: Bphy_0741
gene_biotype: protein_coding
description:
  TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: bxe:Bxe_A0977 bifunctional, chorismate mutase/prephenate dehydratase.


ensembl_gene_id: Bphy_0742
symbol: hisC-2
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A0978 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Bphy_0743
symbol: Bphy_0743
gene_biotype: protein_coding
description:
  PFAM: Prephenate dehydrogenase; KEGG: bxe:Bxe_A0979 bifunctional - 3-phosphoshikimate 1-carboxyvinyl transferase/prephenate dehydrogenase.


ensembl_gene_id: Bphy_0744
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: Bphy_0746
symbol: Bphy_0746
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: Bphy_0747
symbol: ihfB
gene_biotype: protein_coding
description:
  Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: Bphy_0749
symbol: lapB
gene_biotype: protein_coding
description:
  Tetratricopeptide domain protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.


ensembl_gene_id: Bphy_0750
symbol: Bphy_0750
gene_biotype: protein_coding
description:
  TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; Ketopantoate reductase ApbA/PanE domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: bxe:Bxe_A0986 UDP-glucose 6-dehydrogenase.


ensembl_gene_id: Bphy_0751
symbol: Bphy_0751
gene_biotype: protein_coding
description:
  TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: bxe:Bxe_A0987 putative ADP-heptose synthase.


ensembl_gene_id: Bphy_0752
symbol: hldD
gene_biotype: protein_coding
description:
  ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.


ensembl_gene_id: Bphy_0754
symbol: Bphy_0754
gene_biotype: protein_coding
description:
  TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bte:BTH_I1646 cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: Bphy_0756
symbol: Bphy_0756
gene_biotype: protein_coding
description:
  PFAM: histone deacetylase superfamily; KEGG: bxe:Bxe_A0992 putative histone deacetylase-family protein.


ensembl_gene_id: Bphy_0757
symbol: Bphy_0757
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0993 enoyl-CoA hydratase/isomerase family protein.


ensembl_gene_id: Bphy_0759
symbol: metN
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Bphy_0760
symbol: Bphy_0760
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0996 ABC methionine transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0761
symbol: Bphy_0761
gene_biotype: protein_coding
description:
  TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bxe:Bxe_A0997 ABC methionine transporter, periplasmic ligand binding protein; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: Bphy_0762
symbol: Bphy_0762
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bxe:Bxe_A0998 electron transfer flavoprotein, beta-subunit.


ensembl_gene_id: Bphy_0763
symbol: Bphy_0763
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: bcn:Bcen_0584 electron transfer flavoprotein, alpha subunit.


ensembl_gene_id: Bphy_0764
symbol: Bphy_0764
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bxe:Bxe_A1000 putative acyl-CoA dehydrogenase.


ensembl_gene_id: Bphy_0765
symbol: dadA
gene_biotype: protein_coding
description:
  D-amino-acid dehydrogenase; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.


ensembl_gene_id: Bphy_0766
symbol: Bphy_0766
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; KEGG: bxe:Bxe_A1002 transcriptional regulator, AsnC family.


ensembl_gene_id: Bphy_0767
symbol: Bphy_0767
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bxe:Bxe_A1003 hypothetical protein.


ensembl_gene_id: Bphy_0769
symbol: rpsP
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S16; KEGG: bcn:Bcen_0590 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Bphy_0770
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Bphy_0771
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Bphy_0772
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Bphy_0774
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CbiB; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: Bphy_0776
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: Bphy_0778
symbol: orn
gene_biotype: protein_coding
description:
  Exonuclease RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: Bphy_0779
symbol: Bphy_0779
gene_biotype: protein_coding
description:
  TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: bur:Bcep18194_A4193 molybdopterin binding protein.


ensembl_gene_id: Bphy_0780
symbol: Bphy_0780
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF615; KEGG: bch:Bcen2424_1080 protein of unknown function DUF615; Belongs to the UPF0307 family.


ensembl_gene_id: Bphy_0782
symbol: Bphy_0782
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: Bphy_0783
symbol: Bphy_0783
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bxe:Bxe_A1021 sigma54 specific transcriptional regulator, fis family.


ensembl_gene_id: Bphy_0787
symbol: Bphy_0787
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bxe:Bxe_A1029 sigma54 specific transcriptional regulator, fis family.


ensembl_gene_id: Bphy_0788
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: Bphy_0792
symbol: Bphy_0792
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1035 major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_0793
symbol: Bphy_0793
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bxe:Bxe_A1036 transcriptional regulator, AraC family.


ensembl_gene_id: Bphy_0794
symbol: Bphy_0794
gene_biotype: protein_coding
description:
  PFAM: thioesterase superfamily protein; KEGG: bxe:Bxe_A1037 long-chain acyl-CoA thioester hydrolase.


ensembl_gene_id: Bphy_0795
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: Bphy_0797
symbol: Bphy_0797
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bxe:Bxe_A1041 multi antimicrobial extrusion protein MatE.


ensembl_gene_id: Bphy_0805
symbol: Bphy_0805
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bxe:Bxe_A1049 transcriptional regulator, AraC family.


ensembl_gene_id: Bphy_0807
symbol: Bphy_0807
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: Bphy_0808
symbol: pncB
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.


ensembl_gene_id: Bphy_0810
symbol: Bphy_0810
gene_biotype: protein_coding
description:
  PFAM: Citrate transporter; KEGG: bxe:Bxe_A1054 putative arsenite-anitmonite efflux pump, ArsB family.


ensembl_gene_id: Bphy_0811
symbol: Bphy_0811
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bxe:Bxe_A1055 putative 2-ketogluconate reductase.


ensembl_gene_id: Bphy_0815
symbol: Bphy_0815
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Bphy_0816
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: Bphy_0817
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: Bphy_0818
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: Bphy_0819
symbol: Bphy_0819
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Bphy_0820
symbol: Bphy_0820
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_A1064 putative haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Bphy_0823
symbol: Bphy_0823
gene_biotype: protein_coding
description:
  PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bxe:Bxe_A1067 hypothetical protein.


ensembl_gene_id: Bphy_0824
symbol: Bphy_0824
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.


ensembl_gene_id: Bphy_0826
symbol: rpmF
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bcn:Bcen_0639 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: Bphy_0827
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: Bphy_0828
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: Bphy_0829
symbol: Bphy_0829
gene_biotype: protein_coding
description:
  TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: bxe:Bxe_A1073 malonyl CoA-acyl carrier protein transacylase.


ensembl_gene_id: Bphy_0830
symbol: Bphy_0830
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Bphy_0832
symbol: Bphy_0832
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: Bphy_0834
symbol: Bphy_0834
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_A1078 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Bphy_0837
symbol: Bphy_0837
gene_biotype: protein_coding
description:
  Protease Do; KEGG: bxe:Bxe_A1081 subfamily S1C, unassigned peptidase; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.


ensembl_gene_id: Bphy_0839
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Bphy_0840
symbol: Bphy_0840
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1084 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.


ensembl_gene_id: Bphy_0841
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: Bphy_0842
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: Bphy_0844
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: Bphy_0845
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: Bphy_0846
symbol: nagZ
gene_biotype: protein_coding
description:
  Beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.


ensembl_gene_id: Bphy_0847
symbol: Bphy_0847
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bxe:Bxe_A1091 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, fis family.


ensembl_gene_id: Bphy_0848
symbol: Bphy_0848
gene_biotype: protein_coding
description:
  PFAM: CsbD family protein; KEGG: bxe:Bxe_A1092 hypothetical protein; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: Bphy_0849
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Bphy_0851
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: Bphy_0852
symbol: Bphy_0852
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1096 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Bphy_0854
symbol: Bphy_0854
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_A1237 putative acetyltransferase, GNAT family.


ensembl_gene_id: Bphy_0857
symbol: Bphy_0857
gene_biotype: protein_coding
description:
  PFAM: electron transport protein SCO1/SenC; KEGG: bxe:Bxe_A1240 electron transport protein SCO1/SenC.


ensembl_gene_id: Bphy_0858
symbol: Bphy_0858
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.


ensembl_gene_id: Bphy_0859
symbol: Bphy_0859
gene_biotype: protein_coding
description:
  Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.


ensembl_gene_id: Bphy_0860
symbol: Bphy_0860
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A1243 ABC multidrug efflux pump, fused ATPase and inner membrane subunits.


ensembl_gene_id: Bphy_0867
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: Bphy_0870
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: Bphy_0871
symbol: Bphy_0871
gene_biotype: protein_coding
description:
  PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: bxe:Bxe_A1254 putative membrane-bound lytic murein transglycosylase.


ensembl_gene_id: Bphy_0872
symbol: Bphy_0872
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1255 putative major facilitator family (MFS)tranporter.


ensembl_gene_id: Bphy_0873
symbol: carA
gene_biotype: protein_coding
description:
  TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: bxe:Bxe_A1256 carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.


ensembl_gene_id: Bphy_0874
symbol: carB
gene_biotype: protein_coding
description:
  TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: bxe:Bxe_A1257 carbamoyl-phosphate synthase, large subunit, glutamine-dependent; Belongs to the CarB family.


ensembl_gene_id: Bphy_0875
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: Bphy_0878
symbol: rlmE
gene_biotype: protein_coding
description:
  Ribosomal RNA methyltransferase RrmJ/FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: Bphy_0879
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: Bphy_0880
symbol: Bphy_0880
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: Bphy_0881
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: Bphy_0882
symbol: Bphy_0882
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, periplasmic phosphate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: Bphy_0883
symbol: Bphy_0883
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, inner membrane subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Bphy_0884
symbol: Bphy_0884
gene_biotype: protein_coding
description:
  TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A1268 ABC phosphate transporter, inner membrane subunit, PstA.


ensembl_gene_id: Bphy_0885
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: Bphy_0887
symbol: Bphy_0887
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bxe:Bxe_A1271 two component transcriptional regulator, phosphate regulon, winged helix family, PhoB.


ensembl_gene_id: Bphy_0888
symbol: Bphy_0888
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1272 phosphate sensor signal transduction histidine kinase, PhoR; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: Bphy_0890
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: Bphy_0896
symbol: Bphy_0896
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bxe:Bxe_A1292 multi antimicrobial extrusion protein MatE.


ensembl_gene_id: Bphy_0899
symbol: Bphy_0899
gene_biotype: protein_coding
description:
  Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: bxe:Bxe_A1296 peptidoglycan-binding LysM/peptidase M23B.


ensembl_gene_id: Bphy_0902
symbol: uppP-2
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Bphy_0905
symbol: Bphy_0905
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: bxe:Bxe_A1305 putative NUDIX family hydrolase; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Bphy_0906
symbol: Bphy_0906
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_A1306 ABC glutamate/aspartate transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0907
symbol: glnS
gene_biotype: protein_coding
description:
  TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: bxe:Bxe_A1307 glutaminyl-tRNA synthetase.


ensembl_gene_id: Bphy_0909
symbol: Bphy_0909
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_A2458 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Bphy_0910
symbol: Bphy_0910
gene_biotype: protein_coding
description:
  Putative transmembrane anti-sigma factor; KEGG: bxe:Bxe_A2457 predicted transmembrane transcriptional regulator (anti-sigma factor).


ensembl_gene_id: Bphy_0912
symbol: priB
gene_biotype: protein_coding
description:
  Putative primosomal replication protein N, PriB; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.


ensembl_gene_id: Bphy_0913
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: Bphy_0915
symbol: Bphy_0915
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: Bphy_0918
symbol: Bphy_0918
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A2394 putative short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Bphy_0920
symbol: Bphy_0920
gene_biotype: protein_coding
description:
  PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: bur:Bcep18194_A5166 PhoH-like protein.


ensembl_gene_id: Bphy_0921
symbol: Bphy_0921
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bxe:Bxe_A2391 putative bacterioferritin comigratory oxidoreductase.


ensembl_gene_id: Bphy_0923
symbol: Bphy_0923
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bvi:Bcep1808_1789 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Bphy_0925
symbol: Bphy_0925
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_A2387 putative polymixin resistance glycosyltransferase.


ensembl_gene_id: Bphy_0926
symbol: Bphy_0926
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_A2386 putative glutamine-scyllo-inositol transaminase, LPS biosynthesis-related.


ensembl_gene_id: Bphy_0929
symbol: Bphy_0929
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF498; KEGG: bvi:Bcep1808_1783 protein of unknown function DUF498.


ensembl_gene_id: Bphy_0931
symbol: Bphy_0931
gene_biotype: protein_coding
description:
  PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: bxe:Bxe_A2381 homoserine dehydrogenase.


ensembl_gene_id: Bphy_0932
symbol: Bphy_0932
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2380 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.


ensembl_gene_id: Bphy_0934
symbol: Bphy_0934
gene_biotype: protein_coding
description:
  TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bte:BTH_I2201 molybdopterin converting factor, subunit 1.


ensembl_gene_id: Bphy_0935
symbol: Bphy_0935
gene_biotype: protein_coding
description:
  PFAM: molybdopterin biosynthesis MoaE protein; KEGG: bxe:Bxe_A2377 putative molybdopterin synthase large subunit, MoaE.


ensembl_gene_id: Bphy_0937
symbol: Bphy_0937
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; transcriptional regulator TrmB; KEGG: bxe:Bxe_A2375 transcriptional regulator, BadM/Rrf2 family.


ensembl_gene_id: Bphy_0938
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Bphy_0941
symbol: Bphy_0941
gene_biotype: protein_coding
description:
  TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: bch:Bcen2424_4556 penicillin-binding protein 1C.


ensembl_gene_id: Bphy_0942
symbol: Bphy_0942
gene_biotype: protein_coding
description:
  PFAM: alpha-2-macroglobulin domain protein; KEGG: bch:Bcen2424_4555 alpha-2-macroglobulin domain protein.


ensembl_gene_id: Bphy_0943
symbol: Bphy_0943
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bxe:Bxe_A2371 transcriptional regulator, MerR family.


ensembl_gene_id: Bphy_0944
symbol: Bphy_0944
gene_biotype: protein_coding
description:
  PFAM: Carboxymuconolactone decarboxylase; KEGG: bxe:Bxe_A2370 putative carboxymuconolactone decarboxylase.


ensembl_gene_id: Bphy_0945
symbol: Bphy_0945
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bxe:Bxe_A2369 multi antimicrobial extrusion protein MatE family.


ensembl_gene_id: Bphy_0948
symbol: Bphy_0948
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF980; KEGG: bxe:Bxe_A2366 putative inner membrane protein; Belongs to the MtfA family.


ensembl_gene_id: Bphy_0949
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Bphy_0950
symbol: Bphy_0950
gene_biotype: protein_coding
description:
  TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bxe:Bxe_A2362 thioredoxin; Belongs to the thioredoxin family.


ensembl_gene_id: Bphy_0951
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Bphy_0952
symbol: Bphy_0952
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: Bphy_0953
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: Bphy_0954
symbol: Bphy_0954
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A2358 conserved hypothetical protein, transmembrane, CaiB/BaiF family; Belongs to the CoA-transferase III family.


ensembl_gene_id: Bphy_0955
symbol: Bphy_0955
gene_biotype: protein_coding
description:
  PFAM: NMT1/THI5 like domain protein; KEGG: bxe:Bxe_A2357 ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_0956
symbol: Bphy_0956
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2356 ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit.


ensembl_gene_id: Bphy_0957
symbol: Bphy_0957
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2355 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit.


ensembl_gene_id: Bphy_0958
symbol: Bphy_0958
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_A2354 putative NADPH quinone oxidoreductase, zinc-containing.


ensembl_gene_id: Bphy_0959
symbol: surE
gene_biotype: protein_coding
description:
  Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: Bphy_0960
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: Bphy_0961
symbol: Bphy_0961
gene_biotype: protein_coding
description:
  Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: bxe:Bxe_A2351 putative lipoprotein/metalloendopeptidase.


ensembl_gene_id: Bphy_0962
symbol: rpoS
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.


ensembl_gene_id: Bphy_0964
symbol: Bphy_0964
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bvi:Bcep1808_1745 endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Bphy_0965
symbol: rlmD
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmA family; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.


ensembl_gene_id: Bphy_0966
symbol: bamD
gene_biotype: protein_coding
description:
  Putative competence lipoprotein, ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: Bphy_0967
symbol: Bphy_0967
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2346 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Bphy_0968
symbol: Bphy_0968
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF152; KEGG: bxe:Bxe_A2345 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: Bphy_0969
symbol: Bphy_0969
gene_biotype: protein_coding
description:
  TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bxe:Bxe_A2343 poly(R)-hydroxyalkanoic acid synthase, class I.


ensembl_gene_id: Bphy_0970
symbol: Bphy_0970
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2342 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Bphy_0971
symbol: Bphy_0971
gene_biotype: protein_coding
description:
  TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_1727 acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Bphy_0972
symbol: Bphy_0972
gene_biotype: protein_coding
description:
  TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bxe:Bxe_A2340 polyhydroxyalkanoate synthesis repressor PhaR.


ensembl_gene_id: Bphy_0973
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: Bphy_0975
symbol: Bphy_0975
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2335 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Bphy_0977
symbol: Bphy_0977
gene_biotype: protein_coding
description:
  TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bxe:Bxe_A2333 cystathionine beta-lyase.


ensembl_gene_id: Bphy_0978
symbol: Bphy_0978
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2331 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3.


ensembl_gene_id: Bphy_0980
symbol: ku
gene_biotype: protein_coding
description:
  Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: Bphy_0981
symbol: Bphy_0981
gene_biotype: protein_coding
description:
  TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: bxe:Bxe_A2328 putative ATP-dependent DNA ligase.


ensembl_gene_id: Bphy_0983
symbol: Bphy_0983
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2326 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_0984
symbol: Bphy_0984
gene_biotype: protein_coding
description:
  TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_A2325 putative alginate lyase, zinc-containing alcohol dehydrogenase superfamily; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.


ensembl_gene_id: Bphy_0987
symbol: Bphy_0987
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2322 ABC transporter, ATPase subunit.


ensembl_gene_id: Bphy_0990
symbol: Bphy_0990
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A2319 putative periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Bphy_0991
symbol: Bphy_0991
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: bxe:Bxe_A2318 response regulator receiver domain protein(CheY).


ensembl_gene_id: Bphy_0992
symbol: Bphy_0992
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2317 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: Bphy_0993
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: Bphy_0994
symbol: Bphy_0994
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bxe:Bxe_A2315 putative amino-acid dehydratase.


ensembl_gene_id: Bphy_0995
symbol: Bphy_0995
gene_biotype: protein_coding
description:
  TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bxe:Bxe_A2314 acetylornithine deacetylase (ArgE).


ensembl_gene_id: Bphy_0996
symbol: Bphy_0996
gene_biotype: protein_coding
description:
  PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: csa:Csal_2386 acetylornithine deacetylase (ArgE).


ensembl_gene_id: Bphy_0997
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Bphy_0998
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: Bphy_0999
symbol: ispF
gene_biotype: protein_coding
description:
  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: Bphy_1000
symbol: ahpD
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Bphy_1001
symbol: Bphy_1001
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bxe:Bxe_A2309 putative alkyl hydroperoxide reductase subunit C.


ensembl_gene_id: Bphy_1002
symbol: Bphy_1002
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A2308 putative oxidative stress resistance periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Bphy_1003
symbol: Bphy_1003
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bxe:Bxe_A2307 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Bphy_1009
symbol: Bphy_1009
gene_biotype: protein_coding
description:
  PFAM: glycerate kinase; KEGG: bxe:Bxe_A2298 glycerate kinase; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Bphy_1010
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: Bphy_1012
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: Bphy_1013
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: Bphy_1014
symbol: Bphy_1014
gene_biotype: protein_coding
description:
  Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: Bphy_1015
symbol: Bphy_1015
gene_biotype: protein_coding
description:
  PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bxe:Bxe_A2291 putative PpiC-type peptidyl-prolyl cis-trans isomerase.


ensembl_gene_id: Bphy_1018
symbol: Bphy_1018
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2288 ABC transporter, ATPase subunit.


ensembl_gene_id: Bphy_1019
symbol: pgi
gene_biotype: protein_coding
description:
  PFAM: phosphoglucose isomerase (PGI); KEGG: bxe:Bxe_A2287 glucose-6-phosphate isomerase; Belongs to the GPI family.


ensembl_gene_id: Bphy_1020
symbol: nnrE
gene_biotype: protein_coding
description:
  Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]


ensembl_gene_id: Bphy_1021
symbol: Bphy_1021
gene_biotype: protein_coding
description:
  D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_A2285 D-amino-acid dehydrogenase.


ensembl_gene_id: Bphy_1022
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: Bphy_1023
symbol: Bphy_1023
gene_biotype: protein_coding
description:
  PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bch:Bcen2424_1912 PpiC-type peptidyl-prolyl cis-trans isomerase.


ensembl_gene_id: Bphy_1024
symbol: Bphy_1024
gene_biotype: protein_coding
description:
  PFAM: BolA family protein; KEGG: bxe:Bxe_A2279 putative stress-induced morphogene BolA-like protein; Belongs to the BolA/IbaG family.


ensembl_gene_id: Bphy_1025
symbol: Bphy_1025
gene_biotype: protein_coding
description:
  Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: Bphy_1026
symbol: selO
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: Bphy_1027
symbol: Bphy_1027
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A2275 putative medium-chain-fatty-acid-CoA ligase.


ensembl_gene_id: Bphy_1028
symbol: Bphy_1028
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bxe:Bxe_A2274 3-hydroxyacyl-CoA dehydrogenase.


ensembl_gene_id: Bphy_1030
symbol: Bphy_1030
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2273 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Bphy_1032
symbol: Bphy_1032
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: bxe:Bxe_A1493 hypothetical proline rich protein.


ensembl_gene_id: Bphy_1033
symbol: Bphy_1033
gene_biotype: protein_coding
description:
  SMART: Water Stress and Hypersensitive response domain protein; KEGG: bxe:Bxe_A2272 putative lipoprotein.


ensembl_gene_id: Bphy_1034
symbol: Bphy_1034
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0126; KEGG: bch:Bcen2424_5168 protein of unknown function UPF0126.


ensembl_gene_id: Bphy_1036
symbol: Bphy_1036
gene_biotype: protein_coding
description:
  PFAM: thioesterase superfamily protein; KEGG: bxe:Bxe_A2270 phenylacetic acid degradation-related protein.


ensembl_gene_id: Bphy_1037
symbol: Bphy_1037
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: bxe:Bxe_A2269 putative NADP-dependent oxidoreductase.


ensembl_gene_id: Bphy_1038
symbol: Bphy_1038
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A2268 short chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Bphy_1042
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: Bphy_1043
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: Bphy_1045
symbol: Bphy_1045
gene_biotype: protein_coding
description:
  TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: bxe:Bxe_A2260 TatD-related deoxyribonuclease.


ensembl_gene_id: Bphy_1050
symbol: Bphy_1050
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A2254 sugar transferase, glycosyltransferase, group 1.


ensembl_gene_id: Bphy_1053
symbol: Bphy_1053
gene_biotype: protein_coding
description:
  PFAM: PsiF repeat protein; KEGG: bxe:Bxe_A2251 putative phosphate starvation-inducible protein, PsiF.


ensembl_gene_id: Bphy_1056
symbol: Bphy_1056
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2248 mannose-1-phosphateguanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.


ensembl_gene_id: Bphy_1057
symbol: Bphy_1057
gene_biotype: protein_coding
description:
  TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bxe:Bxe_A2246 undecaprenyl-phosphate galactosephosphotransferase.


ensembl_gene_id: Bphy_1058
symbol: Bphy_1058
gene_biotype: protein_coding
description:
  TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: bxe:Bxe_A2245 UDP-glucose 6-dehydrogenase.


ensembl_gene_id: Bphy_1059
symbol: Bphy_1059
gene_biotype: protein_coding
description:
  PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bxe:Bxe_A2244 putative low molecular weight protein-tyrosine-phosphatase, EpsP.


ensembl_gene_id: Bphy_1060
symbol: Bphy_1060
gene_biotype: protein_coding
description:
  PFAM: polysaccharide export protein; KEGG: bxe:Bxe_A2243 polysaccharide (EPS I) exporter, outer membrane auxiliary (OMA) protein family.


ensembl_gene_id: Bphy_1061
symbol: Bphy_1061
gene_biotype: protein_coding
description:
  Capsular exopolysaccharide family; KEGG: bxe:Bxe_A2242 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.


ensembl_gene_id: Bphy_1062
symbol: Bphy_1062
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_A2241 putative glycosyl transferase, family 2, involved in cell wall biogenesis.


ensembl_gene_id: Bphy_1067
symbol: Bphy_1067
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bam:Bamb_4541 transcriptional regulator, XRE family.


ensembl_gene_id: Bphy_1068
symbol: Bphy_1068
gene_biotype: protein_coding
description:
  TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bam:Bamb_4540 HipA domain protein.


ensembl_gene_id: Bphy_1069
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: Bphy_1071
symbol: Bphy_1071
gene_biotype: protein_coding
description:
  PFAM: acyltransferase 3; KEGG: bxe:Bxe_A2232 putative membrane-located cell surface O-antigen acetylase.


ensembl_gene_id: Bphy_1073
symbol: Bphy_1073
gene_biotype: protein_coding
description:
  PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: bxe:Bxe_A2229 polysaccharide transporter, (PST) family.


ensembl_gene_id: Bphy_1075
symbol: Bphy_1075
gene_biotype: protein_coding
description:
  PFAM: acyltransferase 3; KEGG: bxe:Bxe_A2227 putative lipopolysaccharide biosynthesis-related membrane protein.


ensembl_gene_id: Bphy_1077
symbol: Bphy_1077
gene_biotype: protein_coding
description:
  TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bxe:Bxe_A2225 UTP--glucose-1-phosphate uridylyltransferase.


ensembl_gene_id: Bphy_1079
symbol: Bphy_1079
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bur:Bcep18194_B1629 transcriptional regulator, IclR family.


ensembl_gene_id: Bphy_1080
symbol: Bphy_1080
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B5036 protein of unknown function DUF849, prokaryotic.


ensembl_gene_id: Bphy_1081
symbol: Bphy_1081
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: bch:Bcen2424_5305 4-hydroxyphenylpyruvate dioxygenase.


ensembl_gene_id: Bphy_1083
symbol: Bphy_1083
gene_biotype: protein_coding
description:
  PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: bxe:Bxe_A2080 ProQ activator of osmoprotectant transporter ProP.


ensembl_gene_id: Bphy_1089
symbol: Bphy_1089
gene_biotype: protein_coding
description:
  TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: ppu:PP_1002 arginine/ornithine antiporter.


ensembl_gene_id: Bphy_1092
symbol: Bphy_1092
gene_biotype: protein_coding
description:
  KEGG: bvi:Bcep1808_1534 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: Bphy_1094
symbol: Bphy_1094
gene_biotype: protein_coding
description:
  Putative signal-transduction protein with CBS domains; PFAM: CBS domain containing protein; transport-associated; KEGG: bxe:Bxe_A1873 hypothetical protein.


ensembl_gene_id: Bphy_1095
symbol: Bphy_1095
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: bte:BTH_II0454 decarboxylase family protein; Belongs to the LOG family.


ensembl_gene_id: Bphy_1097
symbol: Bphy_1097
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bxe:Bxe_B2642 magnesium-translocating P-type ATPase.


ensembl_gene_id: Bphy_1098
symbol: Bphy_1098
gene_biotype: protein_coding
description:
  1-phosphofructokinase; KEGG: bte:BTH_II0415 6-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Bphy_1099
symbol: Bphy_1099
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Bphy_1101
symbol: Bphy_1101
gene_biotype: protein_coding
description:
  PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bxe:Bxe_A1892 putative phophoslipid binding protein.


ensembl_gene_id: Bphy_1103
symbol: Bphy_1103
gene_biotype: protein_coding
description:
  KEGG: bpl:BURPS1106A_A1467 putative cation-transporting ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein.


ensembl_gene_id: Bphy_1105
symbol: Bphy_1105
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bvi:Bcep1808_6325 beta-lactamase domain protein.


ensembl_gene_id: Bphy_1106
symbol: Bphy_1106
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bam:Bamb_3820 poly-beta-hydroxybutyrate polymerase domain protein.


ensembl_gene_id: Bphy_1108
symbol: Bphy_1108
gene_biotype: protein_coding
description:
  PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bvi:Bcep1808_6350 transport-associated.


ensembl_gene_id: Bphy_1110
symbol: Bphy_1110
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: bvi:Bcep1808_6352 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Bphy_1111
symbol: Bphy_1111
gene_biotype: protein_coding
description:
  PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bxe:Bxe_A1870 periplasmic phospholipid binding protein.


ensembl_gene_id: Bphy_1113
symbol: Bphy_1113
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Belongs to the chaperonin (HSP60) family.


ensembl_gene_id: Bphy_1114
symbol: Bphy_1114
gene_biotype: protein_coding
description:
  TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bps:BPSS2281 PHB depolymerase.


ensembl_gene_id: Bphy_1119
symbol: Bphy_1119
gene_biotype: protein_coding
description:
  PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: bxe:Bxe_A1866 putative K+ ion channel.


ensembl_gene_id: Bphy_1121
symbol: Bphy_1121
gene_biotype: protein_coding
description:
  PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: bxe:Bxe_A1886 H+-transporting two-sector ATPase, gamma subunit.


ensembl_gene_id: Bphy_1122
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Bphy_1123
symbol: atpF
gene_biotype: protein_coding
description:
  H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: Bphy_1124
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Bphy_1125
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: Bphy_1127
symbol: Bphy_1127
gene_biotype: protein_coding
description:
  TIGRFAM: F0F1-ATPase subunit,; PFAM: F0F1-ATPase subunit putative; KEGG: bxe:Bxe_A1881 putative H(+)-transporting ATP synthase, gene 1 protein.


ensembl_gene_id: Bphy_1128
symbol: atpC
gene_biotype: protein_coding
description:
  Alternate F1F0 ATPase, F1 subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: Bphy_1129
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Bphy_1131
symbol: Bphy_1131
gene_biotype: protein_coding
description:
  TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bte:BTH_II0461 acetoacetyl-CoA reductase.


ensembl_gene_id: Bphy_1137
symbol: Bphy_1137
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bmn:BMA10247_A1725 DNA-binding response regulator, LuxR family.


ensembl_gene_id: Bphy_1138
symbol: Bphy_1138
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bpd:BURPS668_A1636 transcriptional regulator, Crp/Fnr family.


ensembl_gene_id: Bphy_1143
symbol: Bphy_1143
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; KEGG: bpd:BURPS668_A1934 two-component sensor kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: Bphy_1145
symbol: Bphy_1145
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; KEGG: bmn:BMA10247_A1432 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: Bphy_1149
symbol: Bphy_1149
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: acr:Acry_2601 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_1152
symbol: Bphy_1152
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rso:RSc1741 hypothetical protein.


ensembl_gene_id: Bphy_1153
symbol: Bphy_1153
gene_biotype: protein_coding
description:
  PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: rso:RSc1742 hypothetical protein.


ensembl_gene_id: Bphy_1155
symbol: Bphy_1155
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_B3698 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.


ensembl_gene_id: Bphy_1156
symbol: Bphy_1156
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: reu:Reut_B3699 extracellular solute-binding protein, family 3.


ensembl_gene_id: Bphy_1158
symbol: Bphy_1158
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sen:SACE_2781 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1160
symbol: Bphy_1160
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1485 major facilitator superfamily MFS_1.


ensembl_gene_id: Bphy_1164
symbol: Bphy_1164
gene_biotype: protein_coding
description:
  Beta-lactamase; PFAM: penicillin-binding protein transpeptidase; beta-lactamase; KEGG: nha:Nham_0446 beta-lactamase.


ensembl_gene_id: Bphy_1165
symbol: Bphy_1165
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B0481 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1166
symbol: Bphy_1166
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B1252 major facilitator superfamily (MFS) multidrug efflux pump.


ensembl_gene_id: Bphy_1167
symbol: Bphy_1167
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bxe:Bxe_B0141 DEAD/DEAH box helicase.


ensembl_gene_id: Bphy_1170
symbol: Bphy_1170
gene_biotype: protein_coding
description:
  TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: ade:Adeh_0760 hypothetical protein.


ensembl_gene_id: Bphy_1171
symbol: Bphy_1171
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: bja:blr3010 probable ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Bphy_1175
symbol: Bphy_1175
gene_biotype: protein_coding
description:
  PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bvi:Bcep1808_4966 putative transcriptional regulator, GntR family.


ensembl_gene_id: Bphy_1176
symbol: Bphy_1176
gene_biotype: protein_coding
description:
  Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: Bphy_1178
symbol: Bphy_1178
gene_biotype: protein_coding
description:
  TIGRFAM: hopanoid biosynthesis associated protein HpnK; PFAM: YdjC family protein; KEGG: bxe:Bxe_B0386 hypothetical protein.


ensembl_gene_id: Bphy_1179
symbol: Bphy_1179
gene_biotype: protein_coding
description:
  Hopanoid biosynthesis associated radical SAM protein HpnJ; KEGG: bxe:Bxe_A2062 putative methyltransferase, or Fe-S oxidoreductase; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Bphy_1180
symbol: Bphy_1180
gene_biotype: protein_coding
description:
  TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_A2068 putative (ceramide) glycosyl transferase, family2.


ensembl_gene_id: Bphy_1183
symbol: Bphy_1183
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bxe:Bxe_A2066 putative QseB, two component transcriptional regulator, winged helix family.


ensembl_gene_id: Bphy_1184
symbol: Bphy_1184
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A2065 putative periplasmic sensor signal transduction histidine kinase, QseC.


ensembl_gene_id: Bphy_1187
symbol: Bphy_1187
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bxe:Bxe_B0571 putative carbon-nitrogen hydrolase.


ensembl_gene_id: Bphy_1188
symbol: Bphy_1188
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_4567 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1189
symbol: Bphy_1189
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bch:Bcen2424_5254 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Bphy_1190
symbol: Bphy_1190
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bvi:Bcep1808_3515 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Bphy_1191
symbol: Bphy_1191
gene_biotype: protein_coding
description:
  PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bur:Bcep18194_A4872 glutathione-dependent formaldehyde-activating, GFA.


ensembl_gene_id: Bphy_1193
symbol: Bphy_1193
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: bxe:Bxe_B0499 putative diguanylate phosphodiesterase (EAL domain).


ensembl_gene_id: Bphy_1194
symbol: Bphy_1194
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1330; KEGG: bur:Bcep18194_B2715 protein of unknown function DUF1330.


ensembl_gene_id: Bphy_1204
symbol: Bphy_1204
gene_biotype: protein_coding
description:
  TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: azo:azo3317 zinc-binding alcohol dehydrogenase.


ensembl_gene_id: Bphy_1216
symbol: Bphy_1216
gene_biotype: protein_coding
description:
  PFAM: phospholipase D/Transphosphatidylase; KEGG: bxe:Bxe_B0786 putative cardiolipin synthetase; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.


ensembl_gene_id: Bphy_1220
symbol: Bphy_1220
gene_biotype: protein_coding
description:
  PFAM: MscS Mechanosensitive ion channel; KEGG: bxe:Bxe_A3271 putative small conductance mechanosensitive ion channel.


ensembl_gene_id: Bphy_1221
symbol: Bphy_1221
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A3031 major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_1226
symbol: Bphy_1226
gene_biotype: protein_coding
description:
  TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1987 alpha-ketoglutarate/proton symporter, major facilitator superfamily (MFS).


ensembl_gene_id: Bphy_1228
symbol: Bphy_1228
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF444; KEGG: bxe:Bxe_A2006 protein of unknown function, DUF444; Belongs to the UPF0229 family.


ensembl_gene_id: Bphy_1229
symbol: Bphy_1229
gene_biotype: protein_coding
description:
  PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: bxe:Bxe_A2005 putative serine protein kinase, PrkA.


ensembl_gene_id: Bphy_1232
symbol: Bphy_1232
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bxe:Bxe_A2002 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Bphy_1233
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: Bphy_1234
symbol: Bphy_1234
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A2000 transcriptional regulator, LacI family.


ensembl_gene_id: Bphy_1235
symbol: Bphy_1235
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A1999 ABC ribose transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_1236
symbol: Bphy_1236
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A1998 ABC ribose transporter, fused ATPase subunits.


ensembl_gene_id: Bphy_1237
symbol: Bphy_1237
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A1997 ABC ribose transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_1238
symbol: Bphy_1238
gene_biotype: protein_coding
description:
  PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bur:Bcep18194_A6476 lysine exporter family protein (LysE/YggA).


ensembl_gene_id: Bphy_1239
symbol: corA
gene_biotype: protein_coding
description:
  Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.


ensembl_gene_id: Bphy_1243
symbol: Bphy_1243
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; Saccharopine dehydrogenase; KEGG: bxe:Bxe_A1992 putative saccharopine dehydrogenase, NAD-binding.


ensembl_gene_id: Bphy_1244
symbol: Bphy_1244
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; KEGG: bxe:Bxe_A1991 transcriptional regulator, AsnC family.


ensembl_gene_id: Bphy_1245
symbol: Bphy_1245
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1990 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1250
symbol: Bphy_1250
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A1983 transcriptional regulator, LacI family.


ensembl_gene_id: Bphy_1251
symbol: Bphy_1251
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bxe:Bxe_A1982 putative 2-ketogluconate 6-phosphate reductase, TkrA.


ensembl_gene_id: Bphy_1252
symbol: Bphy_1252
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1981 major facilitator superfamily (MFS) 2-ketogluconate transporter.


ensembl_gene_id: Bphy_1253
symbol: Bphy_1253
gene_biotype: protein_coding
description:
  PFAM: PfkB domain protein; KEGG: bxe:Bxe_A1980 putative sugar (2-ketogluconate) kinase, PfkB family; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Bphy_1254
symbol: Bphy_1254
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_A5030 xylose isomerase-like TIM barrel.


ensembl_gene_id: Bphy_1255
symbol: Bphy_1255
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1978 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1258
symbol: Bphy_1258
gene_biotype: protein_coding
description:
  Chloride channel core; PFAM: CBS domain containing protein; Chloride channel core; KEGG: bxe:Bxe_A1975 putative chloride channel family protein, ClcB-like.


ensembl_gene_id: Bphy_1262
symbol: Bphy_1262
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pap:PSPA7_2749 probable transcriptional regulator.


ensembl_gene_id: Bphy_1265
symbol: Bphy_1265
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A1968 multidrug efflux pump, membrane fusion protein, CzcB subfamily; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Bphy_1266
symbol: Bphy_1266
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_A1967 multidrug efflux pump, RND family, AcrB/AcrD/AcrF subfamily; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Bphy_1267
symbol: Bphy_1267
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_A1966 RND efflux system, outer membrane lipoprotein, NodT family.


ensembl_gene_id: Bphy_1268
symbol: Bphy_1268
gene_biotype: protein_coding
description:
  TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: bxe:Bxe_A1961 putative penicillin-binding (peptidoglycan synthetase) transmembrane protein, MrcA.


ensembl_gene_id: Bphy_1270
symbol: Bphy_1270
gene_biotype: protein_coding
description:
  Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: bxe:Bxe_A1959 putative phage shock protein A, PspA.


ensembl_gene_id: Bphy_1271
symbol: Bphy_1271
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bxe:Bxe_A1958 putative TPR repeat membrane protein.


ensembl_gene_id: Bphy_1275
symbol: Bphy_1275
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: bxe:Bxe_A1954 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Bphy_1276
symbol: Bphy_1276
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A1953 ABC polyamine transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1277
symbol: Bphy_1277
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A1952 ABC polyamine transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1279
symbol: Bphy_1279
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.


ensembl_gene_id: Bphy_1280
symbol: Bphy_1280
gene_biotype: protein_coding
description:
  TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bxe:Bxe_A1949 Mn2+/Fe2+ transporters, NRAMP family, MntH.


ensembl_gene_id: Bphy_1281
symbol: Bphy_1281
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1289; KEGG: bvi:Bcep1808_1695 protein of unknown function DUF1289.


ensembl_gene_id: Bphy_1284
symbol: Bphy_1284
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: bxe:Bxe_A1944 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Bphy_1285
symbol: Bphy_1285
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A1943 ABC transporter, fused ATPase subunits.


ensembl_gene_id: Bphy_1286
symbol: Bphy_1286
gene_biotype: protein_coding
description:
  2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bch:Bcen2424_1953 2-hydroxy-3-oxopropionate reductase.


ensembl_gene_id: Bphy_1287
symbol: Bphy_1287
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1458; KEGG: bur:Bcep18194_A5265 protein of unknown function DUF1458.


ensembl_gene_id: Bphy_1288
symbol: Bphy_1288
gene_biotype: protein_coding
description:
  PFAM: basic membrane lipoprotein; KEGG: bxe:Bxe_A1941 ABC transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_1289
symbol: Bphy_1289
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A1940 ABC transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_1290
symbol: Bphy_1290
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A1939 ABC transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_1291
symbol: Bphy_1291
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A1938 ABC transporter, fused ATPase subunits.


ensembl_gene_id: Bphy_1292
symbol: Bphy_1292
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1937 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1294
symbol: Bphy_1294
gene_biotype: protein_coding
description:
  TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: bxe:Bxe_A1934 putative transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.


ensembl_gene_id: Bphy_1297
symbol: allA
gene_biotype: protein_coding
description:
  Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.


ensembl_gene_id: Bphy_1298
symbol: alc
gene_biotype: protein_coding
description:
  Allantoicase; KEGG: bxe:Bxe_A1928 allantoicase; TIGRFAM: allantoicase; PFAM: Allantoicase region; Belongs to the allantoicase family.


ensembl_gene_id: Bphy_1300
symbol: Bphy_1300
gene_biotype: protein_coding
description:
  Urate catabolism protein; KEGG: bxe:Bxe_A1926 putative polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase.


ensembl_gene_id: Bphy_1302
symbol: Bphy_1302
gene_biotype: protein_coding
description:
  PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bxe:Bxe_A1924 nucleobase/cation symporter, NCS1 family.


ensembl_gene_id: Bphy_1303
symbol: Bphy_1303
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bxe:Bxe_A1922 transcriptional regulator, GntR family.


ensembl_gene_id: Bphy_1304
symbol: Bphy_1304
gene_biotype: protein_coding
description:
  PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: bxe:Bxe_A1921 muramoyltetrapeptide carboxypeptidase.


ensembl_gene_id: Bphy_1305
symbol: tadA
gene_biotype: protein_coding
description:
  CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Bphy_1309
symbol: Bphy_1309
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN2356 hypothetical protein.


ensembl_gene_id: Bphy_1310
symbol: Bphy_1310
gene_biotype: protein_coding
description:
  TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: bxe:Bxe_B2228 hypothetical protein.


ensembl_gene_id: Bphy_1314
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: Bphy_1315
symbol: Bphy_1315
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A1705 putative 10 TMS drug/metabolite exporter, DME family, DMT super family.


ensembl_gene_id: Bphy_1316
symbol: rnfH
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0125; KEGG: bur:Bcep18194_A5307 hypothetical protein; Belongs to the UPF0125 (RnfH) family.


ensembl_gene_id: Bphy_1318
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: Bphy_1322
symbol: Bphy_1322
gene_biotype: protein_coding
description:
  Protein of unknown function DUF299; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: Bphy_1325
symbol: lpxB
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: Bphy_1326
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: Bphy_1327
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: Bphy_1328
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: Bphy_1329
symbol: Bphy_1329
gene_biotype: protein_coding
description:
  PFAM: outer membrane chaperone Skp (OmpH); KEGG: bxe:Bxe_A1691 outer membrane protein (OmpH-like); Belongs to the skp family.


ensembl_gene_id: Bphy_1330
symbol: bamA
gene_biotype: protein_coding
description:
  Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: Bphy_1331
symbol: Bphy_1331
gene_biotype: protein_coding
description:
  TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: bxe:Bxe_A1689 peptidase M50, putative membrane-associated zinc metallopeptidase.


ensembl_gene_id: Bphy_1332
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: Bphy_1333
symbol: Bphy_1333
gene_biotype: protein_coding
description:
  PFAM: phosphatidate cytidylyltransferase; KEGG: bxe:Bxe_A1687 putative phosphatidate cytidylyltransferase; Belongs to the CDS family.


ensembl_gene_id: Bphy_1334
symbol: Bphy_1334
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: Bphy_1335
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: Bphy_1337
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: Bphy_1338
symbol: rpsB
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S2; KEGG: bxe:Bxe_A1682 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: Bphy_1340
symbol: glnD
gene_biotype: protein_coding
description:
  UTP-GlnB uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen fixation and metabolism.


ensembl_gene_id: Bphy_1341
symbol: Bphy_1341
gene_biotype: protein_coding
description:
  PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bxe:Bxe_A1678 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Bphy_1343
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: Bphy_1345
symbol: Bphy_1345
gene_biotype: protein_coding
description:
  ZipA FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.


ensembl_gene_id: Bphy_1346
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: Bphy_1347
symbol: Bphy_1347
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A1673 putative 10 TMS drug/metabolite exporter, DME family, DMT super family.


ensembl_gene_id: Bphy_1349
symbol: dapD
gene_biotype: protein_coding
description:
  TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: bxe:Bxe_A1670 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase.


ensembl_gene_id: Bphy_1350
symbol: Bphy_1350
gene_biotype: protein_coding
description:
  PFAM: arsenate reductase and related; KEGG: bxe:Bxe_A1669 conserved hypothetical protein ArsC-like; Belongs to the ArsC family.


ensembl_gene_id: Bphy_1351
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: Bphy_1352
symbol: prmB
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.


ensembl_gene_id: Bphy_1353
symbol: clsA
gene_biotype: protein_coding
description:
  Phospholipase D/Transphosphatidylase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: Bphy_1354
symbol: Bphy_1354
gene_biotype: protein_coding
description:
  PFAM: glutathione peroxidase; Redoxin domain protein; KEGG: bxe:Bxe_A1665 glutathione peroxidase; Belongs to the glutathione peroxidase family.


ensembl_gene_id: Bphy_1355
symbol: Bphy_1355
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A1664 putative ABC transporter, dulicated ATPase subunits.


ensembl_gene_id: Bphy_1356
symbol: Bphy_1356
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A1663 alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.


ensembl_gene_id: Bphy_1358
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: Bphy_1359
symbol: Bphy_1359
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Bphy_1360
symbol: Bphy_1360
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1659 major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_1361
symbol: Bphy_1361
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1658 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: protein of unknown function UPF0031; Phosphomethylpyrimidine kinase type-1.


ensembl_gene_id: Bphy_1363
symbol: Bphy_1363
gene_biotype: protein_coding
description:
  TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: bxe:Bxe_A1656 phage SPO1 DNA polymerase-related protein.


ensembl_gene_id: Bphy_1364
symbol: Bphy_1364
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_A1655 ribosomal-protein-alanine acetyltransferase.


ensembl_gene_id: Bphy_1367
symbol: Bphy_1367
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bxe:Bxe_A1652 putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: Bphy_1368
symbol: Bphy_1368
gene_biotype: protein_coding
description:
  TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: bam:Bamb_2080 isocitrate lyase.


ensembl_gene_id: Bphy_1370
symbol: Bphy_1370
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1649 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1371
symbol: Bphy_1371
gene_biotype: protein_coding
description:
  Haloacid dehalogenase, type II; KEGG: bxe:Bxe_A1648 HAD-superfamily hydrolase, subfamily IA, variant2; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Bphy_1372
symbol: Bphy_1372
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1647 malate synthase A; TIGRFAM: malate synthase A; PFAM: malate synthase; Belongs to the malate synthase family.


ensembl_gene_id: Bphy_1374
symbol: Bphy_1374
gene_biotype: protein_coding
description:
  Regulator of ribonuclease activity A; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity).


ensembl_gene_id: Bphy_1375
symbol: Bphy_1375
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bxe:Bxe_A1644 transcriptional regulator, AraC family.


ensembl_gene_id: Bphy_1377
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: Bphy_1380
symbol: Bphy_1380
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A1639 ABC peptide transporter, ATPase subunit; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Bphy_1381
symbol: Bphy_1381
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A1638 ABC peptide transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1382
symbol: Bphy_1382
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A1637 ABC peptide transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1383
symbol: Bphy_1383
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bxe:Bxe_A1636 ABC peptide transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_1384
symbol: Bphy_1384
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bmn:BMA10247_1384 enoyl-[acyl-carrier-protein] reductase (NADH).


ensembl_gene_id: Bphy_1386
symbol: Bphy_1386
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1630 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.


ensembl_gene_id: Bphy_1387
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: Bphy_1388
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: Bphy_1389
symbol: Bphy_1389
gene_biotype: protein_coding
description:
  PFAM: HhH-GPD family protein; KEGG: bxe:Bxe_A1627 HhH-GPD superfamily base excision DNA repair protein.


ensembl_gene_id: Bphy_1390
symbol: cysS
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1626 cysteinyl-tRNA synthetase, class Ia; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Bphy_1391
symbol: Bphy_1391
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_A1625 hypothetical protein.


ensembl_gene_id: Bphy_1392
symbol: Bphy_1392
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Bphy_1394
symbol: lpxH
gene_biotype: protein_coding
description:
  UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: Bphy_1396
symbol: trmJ
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: Bphy_1398
symbol: Bphy_1398
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1618 putative major facilitator superfamily (MFS)transporter.


ensembl_gene_id: Bphy_1399
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: Bphy_1402
symbol: Bphy_1402
gene_biotype: protein_coding
description:
  PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: bxe:Bxe_A1614 hypothetical protein.


ensembl_gene_id: Bphy_1406
symbol: Bphy_1406
gene_biotype: protein_coding
description:
  PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: bxe:Bxe_A1609 S1 RNA binding domain protein.


ensembl_gene_id: Bphy_1407
symbol: kup
gene_biotype: protein_coding
description:
  K potassium transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: Bphy_1409
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Bphy_1410
symbol: hisZ
gene_biotype: protein_coding
description:
  tRNA synthetase class II (G H P and S); Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.


ensembl_gene_id: Bphy_1414
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: Bphy_1415
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: Bphy_1416
symbol: der
gene_biotype: protein_coding
description:
  Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Bphy_1417
symbol: bamB
gene_biotype: protein_coding
description:
  Outer membrane assembly lipoprotein YfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: Bphy_1419
symbol: hisS
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1595 histidyl-tRNA synthetase, class IIa; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.


ensembl_gene_id: Bphy_1420
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Bphy_1422
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Bphy_1423
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: Bphy_1424
symbol: Bphy_1424
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0005; KEGG: bte:BTH_I2230 hypothetical protein; Belongs to the BI1 family.


ensembl_gene_id: Bphy_1425
symbol: Bphy_1425
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_A1587 putative metallo-beta-lactamase family protein.


ensembl_gene_id: Bphy_1427
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Bphy_1429
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Bphy_1431
symbol: Bphy_1431
gene_biotype: protein_coding
description:
  TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: bxe:Bxe_A1581 SUA5/YciO/YrdC/YwlC family translation factor; Belongs to the SUA5 family.


ensembl_gene_id: Bphy_1432
symbol: Bphy_1432
gene_biotype: protein_coding
description:
  PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: bxe:Bxe_A1580 hypothetical protein.


ensembl_gene_id: Bphy_1434
symbol: Bphy_1434
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF455; KEGG: bte:BTH_I1899 protein of unknown function (DUF455) superfamily.


ensembl_gene_id: Bphy_1435
symbol: Bphy_1435
gene_biotype: protein_coding
description:
  PFAM: transferase hexapeptide repeat containing protein; KEGG: bxe:Bxe_A1577 putative transferase, hexapeptide repeat.


ensembl_gene_id: Bphy_1436
symbol: Bphy_1436
gene_biotype: protein_coding
description:
  Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.


ensembl_gene_id: Bphy_1438
symbol: ftsB
gene_biotype: protein_coding
description:
  Septum formation initiator; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: Bphy_1439
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Bphy_1440
symbol: kdsA
gene_biotype: protein_coding
description:
  TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: bxe:Bxe_A1572 2-dehydro-3-deoxyphosphooctonate aldolase.


ensembl_gene_id: Bphy_1441
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Bphy_1443
symbol: Bphy_1443
gene_biotype: protein_coding
description:
  TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: bxe:Bxe_A1569 ComEC/Rec2-related protein.


ensembl_gene_id: Bphy_1445
symbol: lolD
gene_biotype: protein_coding
description:
  Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.


ensembl_gene_id: Bphy_1446
symbol: Bphy_1446
gene_biotype: protein_coding
description:
  TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: bxe:Bxe_A1566 ABC lipoprotein efflux pump, inner membrane subunit.


ensembl_gene_id: Bphy_1448
symbol: Bphy_1448
gene_biotype: protein_coding
description:
  TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: bxe:Bxe_A1564 RecJ exonuclease.


ensembl_gene_id: Bphy_1449
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Bphy_1450
symbol: lysS
gene_biotype: protein_coding
description:
  TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bxe:Bxe_A1561 lysyl-tRNA synthetase, class-2; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Bphy_1452
symbol: Bphy_1452
gene_biotype: protein_coding
description:
  TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: bxe:Bxe_A1559 hypothetical protein.


ensembl_gene_id: Bphy_1453
symbol: Bphy_1453
gene_biotype: protein_coding
description:
  TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: bte:BTH_I1880 ferredoxin, 2Fe-2S type, ISC system.


ensembl_gene_id: Bphy_1454
symbol: hscA
gene_biotype: protein_coding
description:
  Fe-S protein assembly chaperone HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.


ensembl_gene_id: Bphy_1455
symbol: hscB
gene_biotype: protein_coding
description:
  Co-chaperone Hsc20; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family.


ensembl_gene_id: Bphy_1456
symbol: Bphy_1456
gene_biotype: protein_coding
description:
  TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_A1555 iron-sulphur cluster assembly protein IscA; Belongs to the HesB/IscA family.


ensembl_gene_id: Bphy_1457
symbol: Bphy_1457
gene_biotype: protein_coding
description:
  FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.


ensembl_gene_id: Bphy_1458
symbol: iscS
gene_biotype: protein_coding
description:
  Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.


ensembl_gene_id: Bphy_1459
symbol: Bphy_1459
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: bxe:Bxe_A1552 transcriptional regulator, BadM/Rrf2 family.


ensembl_gene_id: Bphy_1460
symbol: Bphy_1460
gene_biotype: protein_coding
description:
  PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bxe:Bxe_A1551 protein tyrosine phosphatase.


ensembl_gene_id: Bphy_1464
symbol: Bphy_1464
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bxe:Bxe_A1547 hypothetical protein.


ensembl_gene_id: Bphy_1465
symbol: Bphy_1465
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bxe:Bxe_A1546 transcriptional regulator, IclR family.


ensembl_gene_id: Bphy_1466
symbol: Bphy_1466
gene_biotype: protein_coding
description:
  PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bxe:Bxe_A1545 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.


ensembl_gene_id: Bphy_1468
symbol: Bphy_1468
gene_biotype: protein_coding
description:
  TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bpm:BURPS1710b_2743 pyruvate dehydrogenase, E3 component, dihydrolipoamide dehydrogenase.


ensembl_gene_id: Bphy_1469
symbol: Bphy_1469
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: Bphy_1470
symbol: Bphy_1470
gene_biotype: protein_coding
description:
  2-oxo-acid dehydrogenase E1 subunit, homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: Bphy_1471
symbol: Bphy_1471
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1540 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: Bphy_1472
symbol: Bphy_1472
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_A1539 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Bphy_1475
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Bphy_1478
symbol: Bphy_1478
gene_biotype: protein_coding
description:
  TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bxe:Bxe_A1526 exodeoxyribonucleaseIII xth.


ensembl_gene_id: Bphy_1479
symbol: ntrC
gene_biotype: protein_coding
description:
  Nitrogen metabolism transcriptional regulator, NtrC, Fis Family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: Bphy_1480
symbol: Bphy_1480
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A1523 putative nitrogen regulation, histidine kinase, protein NR(II).


ensembl_gene_id: Bphy_1481
symbol: Bphy_1481
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bvi:Bcep1808_2228 glutamine synthetase, type I.


ensembl_gene_id: Bphy_1486
symbol: Bphy_1486
gene_biotype: protein_coding
description:
  TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1 heme region; KEGG: bxe:Bxe_A1516 hypothetical protein.


ensembl_gene_id: Bphy_1487
symbol: Bphy_1487
gene_biotype: protein_coding
description:
  PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: bxe:Bxe_A1514 outer membrane protein, putative autotransporter and adhesin.


ensembl_gene_id: Bphy_1488
symbol: Bphy_1488
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1513 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases.


ensembl_gene_id: Bphy_1489
symbol: argA
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1512 amino-acid N-acetyltransferase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; aspartate/glutamate/uridylate kinase; Belongs to the acetyltransferase family. ArgA subfamily.


ensembl_gene_id: Bphy_1490
symbol: Bphy_1490
gene_biotype: protein_coding
description:
  Fe(II) trafficking protein YggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.


ensembl_gene_id: Bphy_1491
symbol: Bphy_1491
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1509 putative proline/betaine major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_1492
symbol: Bphy_1492
gene_biotype: protein_coding
description:
  TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: bxe:Bxe_A1508 protein of unknown function UPF0025.


ensembl_gene_id: Bphy_1495
symbol: Bphy_1495
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_4044 cupin 2, conserved barrel domain protein.


ensembl_gene_id: Bphy_1496
symbol: Bphy_1496
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bxe:Bxe_A1496 putative pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Bphy_1498
symbol: Bphy_1498
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bte:BTH_I2794 glutathione S-transferase domain protein.


ensembl_gene_id: Bphy_1500
symbol: Bphy_1500
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A1469 transcriptional regulator, LacI family.


ensembl_gene_id: Bphy_1501
symbol: Bphy_1501
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_A1468 ABC polyamine transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_1502
symbol: Bphy_1502
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A1467 ABC polyamine transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1503
symbol: Bphy_1503
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A1466 ABC polyamine transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1504
symbol: Bphy_1504
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A1465 ABC polyamine transporter, ATPase subunit; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Bphy_1505
symbol: cpdA
gene_biotype: protein_coding
description:
  Metallophosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: Bphy_1506
symbol: Bphy_1506
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1462 major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_1507
symbol: Bphy_1507
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: bxe:Bxe_A1461 response regulator receiver domain protein(CheY).


ensembl_gene_id: Bphy_1508
symbol: Bphy_1508
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_A1460 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Bphy_1512
symbol: Bphy_1512
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bxe:Bxe_A1456 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Bphy_1515
symbol: Bphy_1515
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: bxe:Bxe_A1452 2,4-dienoyl-CoA reductase FadH2.


ensembl_gene_id: Bphy_1516
symbol: Bphy_1516
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A1451 putative 10 TMS drug/metabolite exporter, DME family, DMT super family.


ensembl_gene_id: Bphy_1518
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: Bphy_1521
symbol: Bphy_1521
gene_biotype: protein_coding
description:
  L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: Bphy_1522
symbol: Bphy_1522
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A1445 putative 10 TMS drug/metabolite exporter, DME family, DMT super family.


ensembl_gene_id: Bphy_1526
symbol: Bphy_1526
gene_biotype: protein_coding
description:
  PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: bxe:Bxe_B2908 putative haemagglutinin.


ensembl_gene_id: Bphy_1529
symbol: Bphy_1529
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A1434 ABC polar amino acid transporter, ATPase subunit.


ensembl_gene_id: Bphy_1530
symbol: Bphy_1530
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A1433 ABC polar amino acid transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1531
symbol: Bphy_1531
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_A1432 ABC polar amino acid transporter, periplasmic ligand binding protein; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Bphy_1532
symbol: Bphy_1532
gene_biotype: protein_coding
description:
  Dihydropyrimidinase; KEGG: bam:Bamb_5963 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3.


ensembl_gene_id: Bphy_1533
symbol: Bphy_1533
gene_biotype: protein_coding
description:
  TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bxe:Bxe_A1430 nucleobase/cation symporter, NCS1 family.


ensembl_gene_id: Bphy_1534
symbol: Bphy_1534
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: bam:Bamb_5965 dihydroorotate dehydrogenase family protein.


ensembl_gene_id: Bphy_1535
symbol: Bphy_1535
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_A1428 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Bphy_1536
symbol: Bphy_1536
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1427 amidase, hydantoinase/carbamoylase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.


ensembl_gene_id: Bphy_1537
symbol: Bphy_1537
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: bur:Bcep18194_C6653 transcriptional regulator, TetR family.


ensembl_gene_id: Bphy_1538
symbol: Bphy_1538
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bxe:Bxe_A1424 benzoyl-CoA oxygenase component A (BoxA).


ensembl_gene_id: Bphy_1540
symbol: Bphy_1540
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A1422 benzoyl-CoA-dihydrodiol lyase (BoxC).


ensembl_gene_id: Bphy_1541
symbol: aroK
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family with shikimate kinase activity; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Bphy_1543
symbol: Bphy_1543
gene_biotype: protein_coding
description:
  TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A1419 benzoate-coenzyme A ligase.


ensembl_gene_id: Bphy_1546
symbol: Bphy_1546
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1415 non-hemolytic phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756.


ensembl_gene_id: Bphy_1547
symbol: Bphy_1547
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bch:Bcen2424_1682 glutathione S-transferase, N-terminal domain; Belongs to the GST superfamily.


ensembl_gene_id: Bphy_1552
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: Bphy_1553
symbol: pheT
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1376 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.


ensembl_gene_id: Bphy_1554
symbol: pheS
gene_biotype: protein_coding
description:
  TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: bam:Bamb_1363 phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: Bphy_1555
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: Bphy_1556
symbol: rpmI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L35; KEGG: bcn:Bcen_0995 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: Bphy_1557
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: Bphy_1558
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).


ensembl_gene_id: Bphy_1562
symbol: Bphy_1562
gene_biotype: protein_coding
description:
  KEGG: bte:BTH_I2607 3-oxoadipate CoA-succinyl transferase beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.


ensembl_gene_id: Bphy_1563
symbol: Bphy_1563
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1366 3-oxoacid CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.


ensembl_gene_id: Bphy_1564
symbol: Bphy_1564
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1365 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; SMART: PAS domain containing protein.


ensembl_gene_id: Bphy_1566
symbol: Bphy_1566
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A1363 putative short chain dehydrogenase.


ensembl_gene_id: Bphy_1567
symbol: Bphy_1567
gene_biotype: protein_coding
description:
  Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.


ensembl_gene_id: Bphy_1569
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: Bphy_1570
symbol: Bphy_1570
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1359 bifunctional - major facilitator superfamily (MFS) lysophospholipid exporter/2-acylglycerolphosphoethanolamine acyltransferase.


ensembl_gene_id: Bphy_1572
symbol: Bphy_1572
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A1357 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.


ensembl_gene_id: Bphy_1576
symbol: Bphy_1576
gene_biotype: protein_coding
description:
  TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: bxe:Bxe_A1353 putative Trp repressor binding protein; Belongs to the WrbA family.


ensembl_gene_id: Bphy_1581
symbol: Bphy_1581
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1347 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1582
symbol: Bphy_1582
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_A1346 aromatic acid efflux system, outer membrane lipoprotein.


ensembl_gene_id: Bphy_1583
symbol: Bphy_1583
gene_biotype: protein_coding
description:
  PFAM: Fusaric acid resistance protein conserved region; KEGG: bxe:Bxe_A1345 putative aromatic acid exporter, (ArAE) family(fusaric acid resistance protein).


ensembl_gene_id: Bphy_1585
symbol: Bphy_1585
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A1343 aromatic acid efflux system, membrane fusion protein, EmrA subfamily; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Bphy_1586
symbol: Bphy_1586
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: bxe:Bxe_A1341 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Bphy_1587
symbol: Bphy_1587
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1340 major facilitator superfamily (MFS) multidrug (fosmidomycin) efflux pump.


ensembl_gene_id: Bphy_1588
symbol: Bphy_1588
gene_biotype: protein_coding
description:
  TIGRFAM: propionate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A1339 acetyl-coenzyme A synthetase.


ensembl_gene_id: Bphy_1589
symbol: Bphy_1589
gene_biotype: protein_coding
description:
  Adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.


ensembl_gene_id: Bphy_1591
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: Bphy_1592
symbol: Bphy_1592
gene_biotype: protein_coding
description:
  TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bxe:Bxe_A1334 UTP--glucose-1-phosphate uridylyltransferase.


ensembl_gene_id: Bphy_1593
symbol: Bphy_1593
gene_biotype: protein_coding
description:
  PFAM: SirA family protein; KEGG: bmn:BMA10247_0734 hypothetical protein; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: Bphy_1594
symbol: Bphy_1594
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: bxe:Bxe_A1332 putative oxidoreductase.


ensembl_gene_id: Bphy_1595
symbol: Bphy_1595
gene_biotype: protein_coding
description:
  Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bxe:Bxe_A1331 myo-inositol 2-dehydrogenase.


ensembl_gene_id: Bphy_1596
symbol: Bphy_1596
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bxe:Bxe_A1330 transcriptional regulator, RpiR family.


ensembl_gene_id: Bphy_1598
symbol: Bphy_1598
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A1328 ABC sugar transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_1599
symbol: Bphy_1599
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A1327 ABC sugar transporter, ATPase subunit.


ensembl_gene_id: Bphy_1601
symbol: Bphy_1601
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bxe:Bxe_A1325 putative myo-inositol catabolism LolD protein; Belongs to the TPP enzyme family.


ensembl_gene_id: Bphy_1602
symbol: Bphy_1602
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bxe:Bxe_A1324 putative myo-inositol catabolism LolE protein.


ensembl_gene_id: Bphy_1603
symbol: Bphy_1603
gene_biotype: protein_coding
description:
  PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bxe:Bxe_A1323 putative myo-inositol catabolism LolB protein.


ensembl_gene_id: Bphy_1604
symbol: Bphy_1604
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A1321 ABC branched chain amino acid family transporter, ATPase subunit.


ensembl_gene_id: Bphy_1605
symbol: Bphy_1605
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A1320 ABC branched chain amino acid family transporter, ATPase subunit.


ensembl_gene_id: Bphy_1606
symbol: Bphy_1606
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A1319 ABC branched chain amino acid family transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_1607
symbol: Bphy_1607
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A1318 ABC branched chain amino acid family transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_1608
symbol: Bphy_1608
gene_biotype: protein_coding
description:
  PFAM: thioesterase superfamily protein; KEGG: bxe:Bxe_A1317 putative 4-hydroxybenzoyl-CoA thioesterase.


ensembl_gene_id: Bphy_1609
symbol: Bphy_1609
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; KEGG: bxe:Bxe_A1316 putative iron-containing alcohol dehydrogenase.


ensembl_gene_id: Bphy_1610
symbol: Bphy_1610
gene_biotype: protein_coding
description:
  Threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.


ensembl_gene_id: Bphy_1611
symbol: Bphy_1611
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1313 putative major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_1612
symbol: Bphy_1612
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1312 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1613
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Bphy_1614
symbol: Bphy_1614
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A1310 alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.


ensembl_gene_id: Bphy_1616
symbol: Bphy_1616
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; KEGG: bxe:Bxe_A1308 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: Bphy_1618
symbol: Bphy_1618
gene_biotype: protein_coding
description:
  PFAM: cytochrome c oxidase subunit II; KEGG: bpd:BURPS668_2257 putative cytochrome c oxidase subunit.


ensembl_gene_id: Bphy_1619
symbol: Bphy_1619
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2459 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1620
symbol: Bphy_1620
gene_biotype: protein_coding
description:
  TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bxe:Bxe_A2460 glyoxylate carboligase; Belongs to the TPP enzyme family.


ensembl_gene_id: Bphy_1621
symbol: Bphy_1621
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2461 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the hyi family.


ensembl_gene_id: Bphy_1622
symbol: Bphy_1622
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2462 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding.


ensembl_gene_id: Bphy_1624
symbol: Bphy_1624
gene_biotype: protein_coding
description:
  TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; KEGG: bxe:Bxe_A2464 L-asparaginase, type II; Belongs to the asparaginase 1 family.


ensembl_gene_id: Bphy_1625
symbol: Bphy_1625
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2466 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1626
symbol: cysA
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Bphy_1627
symbol: Bphy_1627
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2468 ABC sulfate/thiosulfate transporter, inner membrane subunit, CysW.


ensembl_gene_id: Bphy_1628
symbol: Bphy_1628
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Bphy_1629
symbol: Bphy_1629
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_A2470 ABC sulfate/thiosulfate transporter, periplasmic ligand binding protein, CysP.


ensembl_gene_id: Bphy_1630
symbol: lexA
gene_biotype: protein_coding
description:
  Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: Bphy_1634
symbol: nodI
gene_biotype: protein_coding
description:
  Nodulation ABC transporter NodI; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.


ensembl_gene_id: Bphy_1635
symbol: Bphy_1635
gene_biotype: protein_coding
description:
  TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: bxe:Bxe_A2476 ABC lipooligosaccharide exporter, inner membrane subunit, NodJ family.


ensembl_gene_id: Bphy_1638
symbol: Bphy_1638
gene_biotype: protein_coding
description:
  PFAM: aldo/keto reductase; KEGG: bxe:Bxe_A2478 putative oxidoreductase Tas, aldo/keto reductase family.


ensembl_gene_id: Bphy_1639
symbol: Bphy_1639
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_2292 major facilitator superfamily MFS_1.


ensembl_gene_id: Bphy_1641
symbol: dusA
gene_biotype: protein_coding
description:
  TIM-barrel protein, yjbN family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.


ensembl_gene_id: Bphy_1647
symbol: ssuB
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Bphy_1648
symbol: Bphy_1648
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2492 ABC aliphatic sulfonates transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1649
symbol: ssuD
gene_biotype: protein_coding
description:
  Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.


ensembl_gene_id: Bphy_1652
symbol: Bphy_1652
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A2495 putative enoyl(3-hydroxyisobutyryl)-coenzyme A hydratase/isomerase.


ensembl_gene_id: Bphy_1654
symbol: Bphy_1654
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: bxe:Bxe_A2497 putative sugar dehydratase/epimerase.


ensembl_gene_id: Bphy_1659
symbol: Bphy_1659
gene_biotype: protein_coding
description:
  PFAM: small multidrug resistance protein; KEGG: bxe:Bxe_A2502 quaternary ammonium efflux pump, 4 TMS small multidrug resistance (SMR) family, GacE.


ensembl_gene_id: Bphy_1660
symbol: Bphy_1660
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF336; KEGG: bxe:Bxe_A2503 hypothetical protein; Belongs to the UPF0303 family.


ensembl_gene_id: Bphy_1661
symbol: Bphy_1661
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: bxe:Bxe_A2504 putative ADP-ribose pyrophosphatase, NUDIX hydrolase, NudF; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Bphy_1662
symbol: aat
gene_biotype: protein_coding
description:
  Leucyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: Bphy_1663
symbol: bpt
gene_biotype: protein_coding
description:
  Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: Bphy_1664
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: Bphy_1665
symbol: Bphy_1665
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2510 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.


ensembl_gene_id: Bphy_1666
symbol: Bphy_1666
gene_biotype: protein_coding
description:
  Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: bxe:Bxe_A2511 putative oxidoreductase, Gfo/Idh/MocA family.


ensembl_gene_id: Bphy_1667
symbol: Bphy_1667
gene_biotype: protein_coding
description:
  PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bxe:Bxe_A2512 transcriptional regulator, GntR family.


ensembl_gene_id: Bphy_1669
symbol: Bphy_1669
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bxe:Bxe_A2530 transcriptional regulator, Crp/Fnr family.


ensembl_gene_id: Bphy_1671
symbol: Bphy_1671
gene_biotype: protein_coding
description:
  PFAM: 4'-phosphopantetheinyl transferase; KEGG: gvi:gll1951 phosphopantetheinyltransferase family protein; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: Bphy_1672
symbol: Bphy_1672
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain.


ensembl_gene_id: Bphy_1673
symbol: Bphy_1673
gene_biotype: protein_coding
description:
  PFAM: condensation domain protein; KEGG: rpa:RPA3338 possible condensation domain, peptide synthetase.


ensembl_gene_id: Bphy_1682
symbol: Bphy_1682
gene_biotype: protein_coding
description:
  SMART: transcription factor jumonji jmjC domain protein; KEGG: nwi:Nwi_1272 transcription factor jumonji, JmjC.


ensembl_gene_id: Bphy_1684
symbol: Bphy_1684
gene_biotype: protein_coding
description:
  FkbH like protein; TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; KEGG: bur:Bcep18194_A3866 HAD-superfamily phosphatase subfamily IIIC/FkbH domain protein.


ensembl_gene_id: Bphy_1689
symbol: Bphy_1689
gene_biotype: protein_coding
description:
  KEGG: reh:H16_A1857 uncharacterized protein involved in exopolysaccharide biosynthesis; TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis protein.


ensembl_gene_id: Bphy_1691
symbol: Bphy_1691
gene_biotype: protein_coding
description:
  KEGG: bam:Bamb_6491 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.


ensembl_gene_id: Bphy_1693
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: Bphy_1694
symbol: Bphy_1694
gene_biotype: protein_coding
description:
  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bpd:BURPS668_1801 N-acetylmuramoyl-L-alanine amidase.


ensembl_gene_id: Bphy_1696
symbol: rlmB
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 3; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.


ensembl_gene_id: Bphy_1697
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: Bphy_1698
symbol: Bphy_1698
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A2772 major facilitator superfamily (MFS) transporter.


ensembl_gene_id: Bphy_1700
symbol: Bphy_1700
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: bxe:Bxe_A2774 putative transmembrane acyl-CoA dehydrogenase.


ensembl_gene_id: Bphy_1701
symbol: Bphy_1701
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A2775 putative 3-oxoacyl-(acyl-carrier-protein)reductase transmembrane protein.


ensembl_gene_id: Bphy_1702
symbol: Bphy_1702
gene_biotype: protein_coding
description:
  PFAM: MaoC domain protein dehydratase; KEGG: bxe:Bxe_A2776 putative (R)-specific enoyl-CoA hydratase, MaoC-like.


ensembl_gene_id: Bphy_1703
symbol: Bphy_1703
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2777 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Bphy_1704
symbol: Bphy_1704
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A2778 putative long chain fatty-acid CoA ligase(long-chain acyl-CoA synthetase).


ensembl_gene_id: Bphy_1706
symbol: Bphy_1706
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase domain protein; KEGG: bxe:Bxe_A2781 putative flavoprotein subunit p-cresol methylhydroxylase, PchF.


ensembl_gene_id: Bphy_1708
symbol: Bphy_1708
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2783 putative transmembrane transcriptional regulator(anti-sigma factor) protein, PrtR.


ensembl_gene_id: Bphy_1709
symbol: Bphy_1709
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_A2784 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Bphy_1719
symbol: Bphy_1719
gene_biotype: protein_coding
description:
  TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: bxe:Bxe_A2810 dihydrolipoamide dehydrogenase.


ensembl_gene_id: Bphy_1720
symbol: Bphy_1720
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: Bphy_1721
symbol: Bphy_1721
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2812 dehydrogenase, E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; Transketolase central region.


ensembl_gene_id: Bphy_1722
symbol: Bphy_1722
gene_biotype: protein_coding
description:
  TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: bpd:BURPS668_1748 GTP-binding protein TypA.


ensembl_gene_id: Bphy_1724
symbol: Bphy_1724
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_A2815 MFS efflux system, outer membrane lipoprotein, NodT family.


ensembl_gene_id: Bphy_1725
symbol: Bphy_1725
gene_biotype: protein_coding
description:
  TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A2816 MFS efflux system, membrane fusion protein, EmrA subfamily.


ensembl_gene_id: Bphy_1726
symbol: Bphy_1726
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A2817 major facilitator superfamily (MFS) multidrug efflux pump.


ensembl_gene_id: Bphy_1727
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: Bphy_1728
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Bphy_1729
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Bphy_1731
symbol: rimP
gene_biotype: protein_coding
description:
  Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: Bphy_1732
symbol: Bphy_1732
gene_biotype: protein_coding
description:
  Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bxe:Bxe_A2823 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Bphy_1733
symbol: Bphy_1733
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Bphy_1734
symbol: Bphy_1734
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A2825 putative aromatic amino acid aminotransferase.


ensembl_gene_id: Bphy_1735
symbol: Bphy_1735
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2826 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1744
symbol: Bphy_1744
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: bxe:Bxe_A2834 putative diguanylate phosphodiesterase (EAL domain).


ensembl_gene_id: Bphy_1745
symbol: Bphy_1745
gene_biotype: protein_coding
description:
  PFAM: Class I peptide chain release factor; KEGG: bxe:Bxe_A2835 class I peptide chain release factor.


ensembl_gene_id: Bphy_1747
symbol: recD
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...]


ensembl_gene_id: Bphy_1748
symbol: recB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...]


ensembl_gene_id: Bphy_1749
symbol: recC
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...]


ensembl_gene_id: Bphy_1750
symbol: Bphy_1750
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: bxe:Bxe_A2840 putative aromatic acid exporter, ArAE family.


ensembl_gene_id: Bphy_1752
symbol: Bphy_1752
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; KEGG: bxe:Bxe_A2859 transcriptional regulator, AsnC family.


ensembl_gene_id: Bphy_1753
symbol: Bphy_1753
gene_biotype: protein_coding
description:
  PFAM: cysteine dioxygenase type I; KEGG: bxe:Bxe_A2860 predicted metal-dependent enzyme of the double-stranded beta helix superfamily.


ensembl_gene_id: Bphy_1754
symbol: Bphy_1754
gene_biotype: protein_coding
description:
  PFAM: MscS Mechanosensitive ion channel; KEGG: bxe:Bxe_A2861 small conductance mechanosensitive channel ion channel.


ensembl_gene_id: Bphy_1755
symbol: Bphy_1755
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: bxe:Bxe_A2862 putative NADH-flavin reductase protein.


ensembl_gene_id: Bphy_1756
symbol: Bphy_1756
gene_biotype: protein_coding
description:
  Transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bxe:Bxe_A2863 transcriptional regulator, BadM/Rrf2 family.


ensembl_gene_id: Bphy_1758
symbol: Bphy_1758
gene_biotype: protein_coding
description:
  TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bxe:Bxe_A2865 peptidase C56, PfpI.


ensembl_gene_id: Bphy_1760
symbol: Bphy_1760
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: bxe:Bxe_A2867 signal transduction histidine kinases (STHK).


ensembl_gene_id: Bphy_1762
symbol: crcB
gene_biotype: protein_coding
description:
  CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Bphy_1769
symbol: Bphy_1769
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bxe:Bxe_A2906 transcriptional regulator, IclR family.


ensembl_gene_id: Bphy_1771
symbol: Bphy_1771
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A2907 RND efflux pump, membrane fusion protein, CzcB subfamily; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Bphy_1772
symbol: Bphy_1772
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_A2908 RND multidrug efflux pump, AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Bphy_1773
symbol: Bphy_1773
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_A2909 RND multidrug efflux pump, AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Bphy_1775
symbol: Bphy_1775
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bxe:Bxe_A2911 putative peroxiredoxin, bacterioferritin comigratory protein.


ensembl_gene_id: Bphy_1776
symbol: Bphy_1776
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: bxe:Bxe_A2912 putative diguanylate phosphodiesterase (EAL domain).


ensembl_gene_id: Bphy_1777
symbol: Bphy_1777
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: bxe:Bxe_A2913 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) with PAS/PAC sensor(s).


ensembl_gene_id: Bphy_1778
symbol: Bphy_1778
gene_biotype: protein_coding
description:
  Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: bxe:Bxe_A2914 signal transduction protein-like.


ensembl_gene_id: Bphy_1779
symbol: Bphy_1779
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: bxe:Bxe_A2915 putative diguanylate phosphodiesterase (EAL domain).


ensembl_gene_id: Bphy_1780
symbol: Bphy_1780
gene_biotype: protein_coding
description:
  TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_A2917 ABC lysine/arginine/ornithine transporter, periplasmic ligand binding protein; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Bphy_1782
symbol: astE
gene_biotype: protein_coding
description:
  Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.


ensembl_gene_id: Bphy_1783
symbol: astB
gene_biotype: protein_coding
description:
  Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).


ensembl_gene_id: Bphy_1784
symbol: astD
gene_biotype: protein_coding
description:
  Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.


ensembl_gene_id: Bphy_1785
symbol: Bphy_1785
gene_biotype: protein_coding
description:
  KEGG: bmn:BMA10247_1734 arginine N-succinyltransferase, beta subunit; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit.


ensembl_gene_id: Bphy_1786
symbol: Bphy_1786
gene_biotype: protein_coding
description:
  Arginine/ornithine succinyltransferase, alpha subunit; KEGG: bxe:Bxe_A2922 arginine N-succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine/ornithine succinyltransferase, alpha subunit; PFAM: arginine N-succinyltransferase beta subunit.


ensembl_gene_id: Bphy_1787
symbol: argD-2
gene_biotype: protein_coding
description:
  Succinylornithine transaminase family; TIGRFAM: acetylornithine and succinylornithine aminotransferase; succinylornithine transaminase family; PFAM: aminotransferase class-III; KEGG: bxe:Bxe_A2923 acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: Bphy_1788
symbol: Bphy_1788
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A2924 putative arginine regulatory protein, ArgR, AraC family.


ensembl_gene_id: Bphy_1789
symbol: Bphy_1789
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2925 ABC lysine/arginine/ornithine transporter, ATPase subunit.


ensembl_gene_id: Bphy_1790
symbol: Bphy_1790
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2926 ABC lysine/arginine/ornithine transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1791
symbol: Bphy_1791
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2927 ABC lysine/arginine/ornithine transporter, inner membrane subunit.


ensembl_gene_id: Bphy_1792
symbol: Bphy_1792
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: bte:BTH_I0750 hypothetical protein.


ensembl_gene_id: Bphy_1795
symbol: Bphy_1795
gene_biotype: protein_coding
description:
  PFAM: luciferase family protein; KEGG: bxe:Bxe_A2932 putative flavin-dpendent alkanal monooxygenase, luciferase-like.


ensembl_gene_id: Bphy_1796
symbol: Bphy_1796
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_A2933 putative hydrolase protein, transmembrane, alpha/beta hydrolase family fold.


ensembl_gene_id: Bphy_1797
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: Bphy_1799
symbol: pdxY
gene_biotype: protein_coding
description:
  Pyridoxal kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.


ensembl_gene_id: Bphy_1802
symbol: Bphy_1802
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mll0736 probable transcriptional regulator.


ensembl_gene_id: Bphy_1805
symbol: Bphy_1805
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: sen:SACE_4319 aspartate aminotransferase.


ensembl_gene_id: Bphy_1806
symbol: Bphy_1806
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B0683 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1809
symbol: Bphy_1809
gene_biotype: protein_coding
description:
  TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: bxe:Bxe_A2942 formiminoglutamate deiminase.


ensembl_gene_id: Bphy_1810
symbol: hutI
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2943 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; Belongs to the metallo-dependent hydrolases superfamily. HutI family.


ensembl_gene_id: Bphy_1811
symbol: Bphy_1811
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF886; KEGG: bxe:Bxe_A2944 conserved hypothetical protein DUF886.


ensembl_gene_id: Bphy_1813
symbol: Bphy_1813
gene_biotype: protein_coding
description:
  Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bxe:Bxe_A2946 transcriptional regulator, histidine utilization repressor, GntR family.


ensembl_gene_id: Bphy_1814
symbol: hutH
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2947 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.


ensembl_gene_id: Bphy_1816
symbol: Bphy_1816
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bxe:Bxe_A2949 putative NAD dependent epimerase/dehydratase.


ensembl_gene_id: Bphy_1818
symbol: Bphy_1818
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rle:RL1304 hypothetical protein.


ensembl_gene_id: Bphy_1819
symbol: Bphy_1819
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pla:Plav_3201 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Bphy_1821
symbol: Bphy_1821
gene_biotype: protein_coding
description:
  PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bxe:Bxe_A2951 nucleobase/cation symporter, (NCS2) family.


ensembl_gene_id: Bphy_1823
symbol: Bphy_1823
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bte:BTH_I0994 major facilitator superfamily protein.


ensembl_gene_id: Bphy_1824
symbol: Bphy_1824
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A2954 major facilitator superfamily (MFS) metabolite transporter.


ensembl_gene_id: Bphy_1825
symbol: Bphy_1825
gene_biotype: protein_coding
description:
  Amidohydrolase; KEGG: bxe:Bxe_A2955 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Bphy_1826
symbol: Bphy_1826
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2956 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1827
symbol: Bphy_1827
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2957 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1828
symbol: Bphy_1828
gene_biotype: protein_coding
description:
  NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_A2958 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Bphy_1829
symbol: Bphy_1829
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2962 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1830
symbol: Bphy_1830
gene_biotype: protein_coding
description:
  PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bxe:Bxe_A2963 basic amino acid exporter, LysE family.


ensembl_gene_id: Bphy_1833
symbol: Bphy_1833
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A2970 putative lipopolysaccharide N-acetylglucosaminyltransferase.


ensembl_gene_id: Bphy_1840
symbol: Bphy_1840
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3163 transcriptional regulator, AraC family.


ensembl_gene_id: Bphy_1845
symbol: Bphy_1845
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2980 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1846
symbol: Bphy_1846
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A2981 putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily.


ensembl_gene_id: Bphy_1849
symbol: Bphy_1849
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; KEGG: bpm:BURPS1710b_A0782 Bkd operon transcriptional regulator.


ensembl_gene_id: Bphy_1870
symbol: Bphy_1870
gene_biotype: protein_coding
description:
  PFAM: Baseplate J family protein; KEGG: bxe:Bxe_A3047 putative bacteriophage tail protein GP47,Mu-like.


ensembl_gene_id: Bphy_1872
symbol: Bphy_1872
gene_biotype: protein_coding
description:
  TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; KEGG: ypi:YpsIP31758_2735 phage baseplate assembly protein.


ensembl_gene_id: Bphy_1874
symbol: Bphy_1874
gene_biotype: protein_coding
description:
  PFAM: DNA circulation family protein; KEGG: bxe:Bxe_A3051 putative bacteriophage DNA circulation protein, Mu-like.


ensembl_gene_id: Bphy_1878
symbol: Bphy_1878
gene_biotype: protein_coding
description:
  PFAM: Mu tail sheath family protein; KEGG: bxe:Bxe_A3056 putative bacteriophage tail sheath protein GpL, Mu-like.


ensembl_gene_id: Bphy_1887
symbol: Bphy_1887
gene_biotype: protein_coding
description:
  TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: bxe:Bxe_A3064 putative phage portal protein GP17.


ensembl_gene_id: Bphy_1911
symbol: Bphy_1911
gene_biotype: protein_coding
description:
  Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: reu:Reut_A2380 peptidase S24, S26A and S26B.


ensembl_gene_id: Bphy_1917
symbol: Bphy_1917
gene_biotype: protein_coding
description:
  PFAM: C-5 cytosine-specific DNA methylase; KEGG: hch:HCH_02855 site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: Bphy_1927
symbol: Bphy_1927
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: bxe:Bxe_A3110 putative phage integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Bphy_1935
symbol: Bphy_1935
gene_biotype: protein_coding
description:
  Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: tbd:Tbd_2677 possible transcriptional regulator.


ensembl_gene_id: Bphy_1936
symbol: Bphy_1936
gene_biotype: protein_coding
description:
  TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: bxe:Bxe_A3111 solute/Na+ symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Bphy_1938
symbol: acsA
gene_biotype: protein_coding
description:
  acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Bphy_1939
symbol: Bphy_1939
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: bpd:BURPS668_A0626 hypothetical protein.


ensembl_gene_id: Bphy_1941
symbol: Bphy_1941
gene_biotype: protein_coding
description:
  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: Bphy_1944
symbol: Bphy_1944
gene_biotype: protein_coding
description:
  PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: bch:Bcen2424_2197 BFD domain protein (2Fe-2S)-binding domain protein.


ensembl_gene_id: Bphy_1945
symbol: Bphy_1945
gene_biotype: protein_coding
description:
  TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: Bphy_1946
symbol: Bphy_1946
gene_biotype: protein_coding
description:
  PFAM: MotA/TolQ/ExbB proton channel; KEGG: bxe:Bxe_A3141 biopolymer transport transmembrane protein, MotA/TolQ/ExbB like.


ensembl_gene_id: Bphy_1947
symbol: Bphy_1947
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bxe:Bxe_A3142 biopolymer transport transmembrane protein, ExbD/TolR like.


ensembl_gene_id: Bphy_1948
symbol: Bphy_1948
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A3143 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_1949
symbol: Bphy_1949
gene_biotype: protein_coding
description:
  PFAM: Pirin domain protein; KEGG: bxe:Bxe_A3144 putative chromosome condensation pirin-like protein; Belongs to the pirin family.


ensembl_gene_id: Bphy_1950
symbol: Bphy_1950
gene_biotype: protein_coding
description:
  PFAM: OsmC family protein; KEGG: bxe:Bxe_A3145 predicted redox protein regulator of disulfide bond formation, OsmC-like.


ensembl_gene_id: Bphy_1955
symbol: Bphy_1955
gene_biotype: protein_coding
description:
  PFAM: iron permease FTR1; KEGG: bxe:Bxe_A3150 oxidase-dependent Fe2+ transporter, (OFeT)family, FTR1-like.


ensembl_gene_id: Bphy_1958
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: Bphy_1959
symbol: Bphy_1959
gene_biotype: protein_coding
description:
  Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A3154 putative aromatic amino acid aminotransferase.


ensembl_gene_id: Bphy_1960
symbol: Bphy_1960
gene_biotype: protein_coding
description:
  PFAM: Patatin; KEGG: bxe:Bxe_A3155 putative transmembrane protein, patatin-like phospholipase domain.


ensembl_gene_id: Bphy_1961
symbol: Bphy_1961
gene_biotype: protein_coding
description:
  TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A3156 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Bphy_1962
symbol: Bphy_1962
gene_biotype: protein_coding
description:
  PFAM: aldo/keto reductase; KEGG: bxe:Bxe_A3157 putative voltage-gated potassium channel, beta subunit.


ensembl_gene_id: Bphy_1963
symbol: rlmJ
gene_biotype: protein_coding
description:
  Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA.


ensembl_gene_id: Bphy_1964
symbol: Bphy_1964
gene_biotype: protein_coding
description:
  PFAM: NMT1/THI5 like domain protein; KEGG: bxe:Bxe_A3159 ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_1967
symbol: Bphy_1967
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bxe:Bxe_A3161 transcriptional regulator, MerR family.


ensembl_gene_id: Bphy_1968
symbol: Bphy_1968
gene_biotype: protein_coding
description:
  PFAM: Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_A3162 heavy metal binding protein.


ensembl_gene_id: Bphy_1969
symbol: Bphy_1969
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: Bphy_1970
symbol: dnaE2
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: Bphy_1975
symbol: Bphy_1975
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_A3176 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Bphy_1979
symbol: Bphy_1979
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF328; KEGG: bxe:Bxe_A3180 putative membrane protein DUF328; Belongs to the UPF0246 family.


ensembl_gene_id: Bphy_1981
symbol: Bphy_1981
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A3182 putative succinyldiaminopimelate transaminase.


ensembl_gene_id: Bphy_1983
symbol: Bphy_1983
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bxe:Bxe_A3184 putative 3-hydroxyacyl-CoA dehydrogenase, PaaC-like.


ensembl_gene_id: Bphy_1984
symbol: Bphy_1984
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A3185 putative enoyl-CoA hydratase, PaaB-like; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Bphy_1986
symbol: Bphy_1986
gene_biotype: protein_coding
description:
  PFAM: aminoglycoside phosphotransferase; KEGG: bxe:Bxe_A3187 putative tyrosine protein kinase/aminoglycoside phosphotransferase.


ensembl_gene_id: Bphy_1987
symbol: Bphy_1987
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bxe:Bxe_A3188 putative acyl-CoA dehydrogenase oxidoreductase.


ensembl_gene_id: Bphy_1988
symbol: Bphy_1988
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bur:Bcep18194_A5556 glutathione S-transferase-like; Belongs to the GST superfamily.


ensembl_gene_id: Bphy_1989
symbol: Bphy_1989
gene_biotype: protein_coding
description:
  PFAM: MaoC domain protein dehydratase; KEGG: bxe:Bxe_A3189 putative nodulation-related acyl dehydratase, MaoC/NodN-like.


ensembl_gene_id: Bphy_1990
symbol: Bphy_1990
gene_biotype: protein_coding
description:
  PFAM: MaoC domain protein dehydratase; KEGG: bxe:Bxe_A3190 putative (R)-specific enoyl-CoA hydratase, MaoC-like.


ensembl_gene_id: Bphy_1991
symbol: Bphy_1991
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bxe:Bxe_A3191 putative pimeloyl-CoA dehydrogenase (small subunit), PimD-like.


ensembl_gene_id: Bphy_1992
symbol: Bphy_1992
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bxe:Bxe_A3192 putative pimeloyl-CoA dehydrogenase (large subunit), PimC-like.


ensembl_gene_id: Bphy_1993
symbol: Bphy_1993
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1178; KEGG: bxe:Bxe_A3193 conserved hypothetical protein DUF1178.


ensembl_gene_id: Bphy_1996
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: Bphy_1997
symbol: Bphy_1997
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A3202 putative transmembrane NADH dehydrogenase I(chain M), NuoM; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Bphy_1998
symbol: Bphy_1998
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A3203 putative transmembrane NADH dehydrogenase I(chain L), NuoL; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Bphy_1999
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: Bphy_2000
symbol: Bphy_2000
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Bphy_2001
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Bphy_2002
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: Bphy_2003
symbol: Bphy_2003
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: Bphy_2004
symbol: Bphy_2004
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: Bphy_2005
symbol: Bphy_2005
gene_biotype: protein_coding
description:
  TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: bxe:Bxe_A3210 putative NADH dehydrogenase I (chain E), NuoE.


ensembl_gene_id: Bphy_2006
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: Bphy_2007
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: Bphy_2008
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).


ensembl_gene_id: Bphy_2009
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: Bphy_2010
symbol: Bphy_2010
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: Bphy_2011
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: Bphy_2012
symbol: Bphy_2012
gene_biotype: protein_coding
description:
  TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_A3217 putative NADPH quinone oxidoreductase.


ensembl_gene_id: Bphy_2013
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Bphy_2014
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.


ensembl_gene_id: Bphy_2015
symbol: Bphy_2015
gene_biotype: protein_coding
description:
  KEGG: bur:Bcep18194_A5583 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_2017
symbol: leuA-2
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: Bphy_2018
symbol: Bphy_2018
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bxe:Bxe_A3227 CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Bphy_2019
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: Bphy_2020
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: Bphy_2021
symbol: Bphy_2021
gene_biotype: protein_coding
description:
  TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: bxe:Bxe_A3230 acetolactate synthase, small subunit.


ensembl_gene_id: Bphy_2022
symbol: Bphy_2022
gene_biotype: protein_coding
description:
  TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bxe:Bxe_A3231 acetolactate synthase, large subunit, biosynthetic type.


ensembl_gene_id: Bphy_2023
symbol: Bphy_2023
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_A3232 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Bphy_2029
symbol: Bphy_2029
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: Bphy_2031
symbol: Bphy_2031
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: bxe:Bxe_A3240 conserved hypothetical protein 730; Belongs to the LOG family.


ensembl_gene_id: Bphy_2032
symbol: Bphy_2032
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A3241 putative oxidoreductase protein, short-chain dehydrogenase/reductase.


ensembl_gene_id: Bphy_2035
symbol: Bphy_2035
gene_biotype: protein_coding
description:
  PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: bmn:BMA10247_0379 threonyl and alanyl tRNA synthetase domain protein.


ensembl_gene_id: Bphy_2037
symbol: Bphy_2037
gene_biotype: protein_coding
description:
  PFAM: copper resistance D domain protein; KEGG: bvi:Bcep1808_3974 copper resistance D domain protein.


ensembl_gene_id: Bphy_2040
symbol: Bphy_2040
gene_biotype: protein_coding
description:
  PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bte:BTH_II1959 multicopper oxidase.


ensembl_gene_id: Bphy_2048
symbol: Bphy_2048
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF477; KEGG: bvi:Bcep1808_3980 protein of unknown function DUF477.


ensembl_gene_id: Bphy_2050
symbol: Bphy_2050
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF214; KEGG: bxe:Bxe_A3245 ABC lysophospholipase exporter, fused inner membrane subunits, FtsX.


ensembl_gene_id: Bphy_2052
symbol: Bphy_2052
gene_biotype: protein_coding
description:
  PFAM: small multidrug resistance protein; KEGG: bxe:Bxe_A3247 small multidrug efflux pump, SugE (DMT superfamily).


ensembl_gene_id: Bphy_2053
symbol: Bphy_2053
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bxe:Bxe_A3248 two component transcriptional regulator, winged helix family, KdpE.


ensembl_gene_id: Bphy_2054
symbol: Bphy_2054
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: bxe:Bxe_A3249 putative two-component regulatory protein sensor kinase, KdpD.


ensembl_gene_id: Bphy_2055
symbol: kdpC
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: Bphy_2056
symbol: kdpB
gene_biotype: protein_coding
description:
  K+-transporting ATPase, B subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: Bphy_2057
symbol: kdpA
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase, A subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: Bphy_2058
symbol: Bphy_2058
gene_biotype: protein_coding
description:
  TIGRFAM: K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit; KEGG: bxe:Bxe_A3253 hypothetical protein.


ensembl_gene_id: Bphy_2060
symbol: Bphy_2060
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_A3255 putative NADPH-quinone reductase.


ensembl_gene_id: Bphy_2062
symbol: Bphy_2062
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A3257 putative 3-oxoacyl-acyl carrier protein reductase.


ensembl_gene_id: Bphy_2063
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: Bphy_2065
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; KEGG: bxe:Bxe_A3260 phosphoribosylglycinamide synthetase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family.


ensembl_gene_id: Bphy_2066
symbol: hemF
gene_biotype: protein_coding
description:
  Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: Bphy_2067
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: Bphy_2068
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: Bphy_2069
symbol: rlmH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: Bphy_2070
symbol: Bphy_2070
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Bphy_2071
symbol: Bphy_2071
gene_biotype: protein_coding
description:
  TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: bxe:Bxe_A3267 ribonuclease E and G.


ensembl_gene_id: Bphy_2077
symbol: msbA
gene_biotype: protein_coding
description:
  Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: Bphy_2079
symbol: Bphy_2079
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A3292 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein.


ensembl_gene_id: Bphy_2081
symbol: gluQ
gene_biotype: protein_coding
description:
  Glutamate--tRNA ligase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.


ensembl_gene_id: Bphy_2082
symbol: Bphy_2082
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bxe:Bxe_A3295 putative ATP-dependent RNA helicase 2; Belongs to the DEAD box helicase family.


ensembl_gene_id: Bphy_2083
symbol: Bphy_2083
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: bxe:Bxe_A3297 putative dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Bphy_2084
symbol: Bphy_2084
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bxe:Bxe_A3298 putative acetolactate synthase; Belongs to the TPP enzyme family.


ensembl_gene_id: Bphy_2087
symbol: purT
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.


ensembl_gene_id: Bphy_2089
symbol: Bphy_2089
gene_biotype: protein_coding
description:
  PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bxe:Bxe_A3303 putative cell division protein; Belongs to the FtsK/SpoIIIE/SftA family.


ensembl_gene_id: Bphy_2094
symbol: Bphy_2094
gene_biotype: protein_coding
description:
  TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bxe:Bxe_A3308 polyhydroxyalkanoate depolymerase.


ensembl_gene_id: Bphy_2096
symbol: Bphy_2096
gene_biotype: protein_coding
description:
  Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: Bphy_2097
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: Bphy_2101
symbol: Bphy_2101
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A3315 putative ATPase, AAA family protein.


ensembl_gene_id: Bphy_2103
symbol: Bphy_2103
gene_biotype: protein_coding
description:
  TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: bxe:Bxe_A3317 benzoate membrane transport protein.


ensembl_gene_id: Bphy_2104
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.


ensembl_gene_id: Bphy_2105
symbol: Bphy_2105
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: bxe:Bxe_A3319 hypothetical protein.


ensembl_gene_id: Bphy_2111
symbol: ubiC
gene_biotype: protein_coding
description:
  Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.


ensembl_gene_id: Bphy_2114
symbol: Bphy_2114
gene_biotype: protein_coding
description:
  PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bxe:Bxe_A3330 transcriptional regulator, GntR family with aminotransferase activity.


ensembl_gene_id: Bphy_2116
symbol: Bphy_2116
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bur:Bcep18194_A5689 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: Bphy_2117
symbol: Bphy_2117
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A3332 putative aminotransferase.


ensembl_gene_id: Bphy_2119
symbol: Bphy_2119
gene_biotype: protein_coding
description:
  TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: bxe:Bxe_A3334 phenazine biosynthesis PhzC/PhzF protein.


ensembl_gene_id: Bphy_2120
symbol: Bphy_2120
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bxe:Bxe_A3335 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains).


ensembl_gene_id: Bphy_2123
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: Bphy_2124
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase (ATP-hydrolyzing); Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: Bphy_2125
symbol: Bphy_2125
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3340 ABC transporter, duplicated ATPase subunits.


ensembl_gene_id: Bphy_2132
symbol: Bphy_2132
gene_biotype: protein_coding
description:
  PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: bte:BTH_I3231 transposon Tn2501 resolvase.


ensembl_gene_id: Bphy_2140
symbol: Bphy_2140
gene_biotype: protein_coding
description:
  DNA-cytosine methyltransferase; KEGG: bxe:Bxe_A3354 C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase.


ensembl_gene_id: Bphy_2141
symbol: Bphy_2141
gene_biotype: protein_coding
description:
  DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.


ensembl_gene_id: Bphy_2143
symbol: Bphy_2143
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A3373 major facilitator superfamily (MFS) multidrug efflux pump.


ensembl_gene_id: Bphy_2148
symbol: Bphy_2148
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A3376 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, fis family.


ensembl_gene_id: Bphy_2152
symbol: Bphy_2152
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A3379 sigma54 specific transcriptional regulator, fis family.


ensembl_gene_id: Bphy_2155
symbol: Bphy_2155
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3382 ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit.


ensembl_gene_id: Bphy_2156
symbol: Bphy_2156
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A3383 ABC nitrate/sulfonate/bicarbonate family transporter, fused inner membrane subunits.


ensembl_gene_id: Bphy_2157
symbol: Bphy_2157
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bxe:Bxe_A3384 putative diguanylate cyclase (GGDEF domain).


ensembl_gene_id: Bphy_2159
symbol: Bphy_2159
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A3386 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Bphy_2160
symbol: Bphy_2160
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bxe:Bxe_A3387 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Bphy_2163
symbol: Bphy_2163
gene_biotype: protein_coding
description:
  TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_2449 cationic amino acid ABC transporter, periplasmic binding protein; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Bphy_2164
symbol: Bphy_2164
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A3391 ABC basic amino acid transporter, inner membrane subunit.


ensembl_gene_id: Bphy_2165
symbol: Bphy_2165
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A3392 ABC basic amino acid transporter, inner membrane subunit.


ensembl_gene_id: Bphy_2166
symbol: Bphy_2166
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3393 ABC basic amino acid transporter, ATPase subunit.


ensembl_gene_id: Bphy_2168
symbol: Bphy_2168
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: bxe:Bxe_A3395 nitrogen regulatory protein P-II (GlnB, GlnK); Belongs to the P(II) protein family.


ensembl_gene_id: Bphy_2169
symbol: nadE
gene_biotype: protein_coding
description:
  Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: Bphy_2172
symbol: Bphy_2172
gene_biotype: protein_coding
description:
  SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: bxe:Bxe_B1018 hypothetical protein.


ensembl_gene_id: Bphy_2173
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: Bphy_2174
symbol: Bphy_2174
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: bxe:Bxe_A3401 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Bphy_2175
symbol: Bphy_2175
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A3402 putative short chain dehydrogenase.


ensembl_gene_id: Bphy_2176
symbol: Bphy_2176
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A3403 major facilitator superfamily (MFS) metabolite/H+ symporter.


ensembl_gene_id: Bphy_2177
symbol: Bphy_2177
gene_biotype: protein_coding
description:
  PFAM: HemY domain protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: bxe:Bxe_A3409 hypothetical protein.


ensembl_gene_id: Bphy_2178
symbol: Bphy_2178
gene_biotype: protein_coding
description:
  PFAM: Uroporphyrinogen III synthase HEM4; protein of unknown function DUF513 hemX; KEGG: bxe:Bxe_A3410 uroporphyrinogen III synthase HEM4.


ensembl_gene_id: Bphy_2179
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: Bphy_2180
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.


ensembl_gene_id: Bphy_2181
symbol: Bphy_2181
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bxe:Bxe_A3413 putative methyltransferase.


ensembl_gene_id: Bphy_2182
symbol: Bphy_2182
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bxe:Bxe_A3414 transcriptional regulator, XRE family.


ensembl_gene_id: Bphy_2183
symbol: argH
gene_biotype: protein_coding
description:
  TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: bur:Bcep18194_A5760 argininosuccinate lyase.


ensembl_gene_id: Bphy_2186
symbol: Bphy_2186
gene_biotype: protein_coding
description:
  PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: bte:BTH_I0861 Orn/Lys/Arg decarboxylase.


ensembl_gene_id: Bphy_2188
symbol: Bphy_2188
gene_biotype: protein_coding
description:
  PFAM: superoxide dismutase copper/zinc binding; KEGG: bxe:Bxe_A3479 putative copper/zinc superoxide dismutase.


ensembl_gene_id: Bphy_2189
symbol: Bphy_2189
gene_biotype: protein_coding
description:
  Cobyrinic acid ac-diamide synthase; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: Bphy_2190
symbol: Bphy_2190
gene_biotype: protein_coding
description:
  PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: bxe:Bxe_A3482 outer membrane protein, OmpA/MotB family.


ensembl_gene_id: Bphy_2191
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: Bphy_2194
symbol: Bphy_2194
gene_biotype: protein_coding
description:
  PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: bxe:Bxe_A3485 putative outer membrane protein.


ensembl_gene_id: Bphy_2196
symbol: Bphy_2196
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Bphy_2197
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: Bphy_2198
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: Bphy_2200
symbol: Bphy_2200
gene_biotype: protein_coding
description:
  PFAM: thioesterase superfamily protein; KEGG: bxe:Bxe_A3491 phenylacetic acid degradation-related protein.


ensembl_gene_id: Bphy_2203
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: Bphy_2204
symbol: Bphy_2204
gene_biotype: protein_coding
description:
  Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.


ensembl_gene_id: Bphy_2205
symbol: cobD-2
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: Bphy_2206
symbol: Bphy_2206
gene_biotype: protein_coding
description:
  TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A3495 putative cobalamin biosynthetic protein CobC.


ensembl_gene_id: Bphy_2207
symbol: Bphy_2207
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: bxe:Bxe_A3496 ABC Fe3+-hydroxamate/cobalamin transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_2208
symbol: Bphy_2208
gene_biotype: protein_coding
description:
  TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: bxe:Bxe_A3497 putative phosphoglycerate/bisphosphoglycerate mutase.


ensembl_gene_id: Bphy_2209
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: Bphy_2210
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: Bphy_2211
symbol: Bphy_2211
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3500 ABC Fe3+-hydroxamate/cobalamin transporter, ATPase subunit.


ensembl_gene_id: Bphy_2212
symbol: Bphy_2212
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: bxe:Bxe_A3501 ABC Fe3+-hydroxamate/cobalamin transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Bphy_2213
symbol: Bphy_2213
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_A3502 putative outer membrane cobalamin receptor, TonB dependent.


ensembl_gene_id: Bphy_2215
symbol: Bphy_2215
gene_biotype: protein_coding
description:
  Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: Bphy_2219
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Bphy_2220
symbol: Bphy_2220
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A3633 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_2221
symbol: ilvD
gene_biotype: protein_coding
description:
  KEGG: bte:BTH_I0827 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Bphy_2224
symbol: Bphy_2224
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase III chi subunit HolC; KEGG: bxe:Bxe_A3637 putative DNA polymerase III chi subunit.


ensembl_gene_id: Bphy_2225
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: Bphy_2228
symbol: Bphy_2228
gene_biotype: protein_coding
description:
  PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: bam:Bamb_2518 cobalamin (vitamin B12) biosynthesis CbiX protein.


ensembl_gene_id: Bphy_2230
symbol: Bphy_2230
gene_biotype: protein_coding
description:
  TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bte:BTH_I0819 uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: Bphy_2231
symbol: Bphy_2231
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: Bphy_2235
symbol: Bphy_2235
gene_biotype: protein_coding
description:
  PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bxe:Bxe_A3664 putative sulfite reductase.


ensembl_gene_id: Bphy_2236
symbol: Bphy_2236
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A3665 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_2237
symbol: Bphy_2237
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A3666 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_2240
symbol: Bphy_2240
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bxe:Bxe_A3671 putative oxidoreductase.


ensembl_gene_id: Bphy_2241
symbol: Bphy_2241
gene_biotype: protein_coding
description:
  PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: bxe:Bxe_A3672 hypothetical protein.


ensembl_gene_id: Bphy_2243
symbol: Bphy_2243
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3674 ABC sugar transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_2244
symbol: Bphy_2244
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3675 ABC sugar transporter, ATPase subunit.


ensembl_gene_id: Bphy_2245
symbol: Bphy_2245
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A3676 transcriptional regulator, LacI family.


ensembl_gene_id: Bphy_2246
symbol: Bphy_2246
gene_biotype: protein_coding
description:
  PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; KEGG: bxe:Bxe_A3677 protein-L-isoaspartate(D-aspartate)O-methyltransferase.


ensembl_gene_id: Bphy_2251
symbol: Bphy_2251
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, urea binding protein; KEGG: bxe:Bxe_A3683 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_2252
symbol: Bphy_2252
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3684 ABC branched chain amino acid family transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_2253
symbol: Bphy_2253
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3685 ABC branched chain amino acid family transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_2254
symbol: Bphy_2254
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: bxe:Bxe_A3686 ABC branched chain amino acid family transporter, ATPase subunit.


ensembl_gene_id: Bphy_2255
symbol: Bphy_2255
gene_biotype: protein_coding
description:
  Urea ABC transporter, ATP-binding protein UrtE; KEGG: bxe:Bxe_A3687 ABC branched chain amino acid family transporter, ATPase subunit; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Bphy_2256
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: Bphy_2257
symbol: Bphy_2257
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_A3691 ABC amino acid transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_2258
symbol: ureA
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A3692 urease, gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family.


ensembl_gene_id: Bphy_2259
symbol: ureB
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A3693 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; Belongs to the urease beta subunit family.


ensembl_gene_id: Bphy_2260
symbol: ureC
gene_biotype: protein_coding
description:
  TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; Amidohydrolase 3; KEGG: bxe:Bxe_A3694 urease.


ensembl_gene_id: Bphy_2261
symbol: ureE
gene_biotype: protein_coding
description:
  UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.


ensembl_gene_id: Bphy_2262
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: Bphy_2263
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: Bphy_2264
symbol: Bphy_2264
gene_biotype: protein_coding
description:
  Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: Bphy_2266
symbol: Bphy_2266
gene_biotype: protein_coding
description:
  TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A3700 putative lipopolysaccharide heptosyltransferase-1.


ensembl_gene_id: Bphy_2267
symbol: Bphy_2267
gene_biotype: protein_coding
description:
  Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bxe:Bxe_A3701 phosphomannomutase.


ensembl_gene_id: Bphy_2271
symbol: Bphy_2271
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bxe:Bxe_A3705 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Bphy_2273
symbol: Bphy_2273
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc0171 short chain dehydrogenase.


ensembl_gene_id: Bphy_2283
symbol: Bphy_2283
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2514 mannose-1-phosphateguanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.


ensembl_gene_id: Bphy_2287
symbol: Bphy_2287
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bxe:Bxe_A3731 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Bphy_2288
symbol: Bphy_2288
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 4; KEGG: bxe:Bxe_A3732 putative undecaprenyl phosphate N-acetylglucosaminyltransferase.


ensembl_gene_id: Bphy_2289
symbol: Bphy_2289
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bxe:Bxe_A3780 putative epimerase/dehydratase polysaccharide-related biosynthesis protein.


ensembl_gene_id: Bphy_2291
symbol: Bphy_2291
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bxe:Bxe_A3782 putative epimerase/dehydratase.


ensembl_gene_id: Bphy_2293
symbol: Bphy_2293
gene_biotype: protein_coding
description:
  KEGG: csa:Csal_1692 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.


ensembl_gene_id: Bphy_2295
symbol: Bphy_2295
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: bja:bll5639 putative dolichol monophosphate mannose synthase.


ensembl_gene_id: Bphy_2297
symbol: Bphy_2297
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: nmu:Nmul_A2404 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Bphy_2301
symbol: Bphy_2301
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: sus:Acid_3168 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like protein.


ensembl_gene_id: Bphy_2302
symbol: Bphy_2302
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: bmn:BMA10247_2180 putative capsular polysaccharide biosynthesis protein.


ensembl_gene_id: Bphy_2305
symbol: Bphy_2305
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rsq:Rsph17025_3844 hypothetical protein.


ensembl_gene_id: Bphy_2308
symbol: Bphy_2308
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rfr:Rfer_0689 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Bphy_2313
symbol: Bphy_2313
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: net:Neut_0152 ABC transporter-related protein.


ensembl_gene_id: Bphy_2314
symbol: Bphy_2314
gene_biotype: protein_coding
description:
  PFAM: ABC-2 type transporter; KEGG: hch:HCH_10008 ABC-type polysaccharide/polyol phosphate export systems, permease component.


ensembl_gene_id: Bphy_2317
symbol: Bphy_2317
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: Bphy_2318
symbol: Bphy_2318
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: Bphy_2319
symbol: Bphy_2319
gene_biotype: protein_coding
description:
  TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bch:Bcen2424_0871 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: Bphy_2320
symbol: Bphy_2320
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bxe:Bxe_A3804 putative UDP-glucose 4-epimerase.


ensembl_gene_id: Bphy_2321
symbol: apaH
gene_biotype: protein_coding
description:
  Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.


ensembl_gene_id: Bphy_2322
symbol: Bphy_2322
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; KEGG: bxe:Bxe_A3806 putative 1-acyl-SN-glycerol-3-phosphate acyltransferase.


ensembl_gene_id: Bphy_2323
symbol: Bphy_2323
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: bxe:Bxe_A3807 dihydroorotase multifunctional complex type.


ensembl_gene_id: Bphy_2324
symbol: pyrB
gene_biotype: protein_coding
description:
  TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: bte:BTH_I1465 aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: Bphy_2325
symbol: Bphy_2325
gene_biotype: protein_coding
description:
  PFAM: phosphoribosyltransferase; KEGG: bxe:Bxe_A3809 putative bifunctional regulator/uracil phosphoribosyltransferase.


ensembl_gene_id: Bphy_2326
symbol: Bphy_2326
gene_biotype: protein_coding
description:
  Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: Bphy_2327
symbol: Bphy_2327
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF179; KEGG: bxe:Bxe_A3811 hypothetical protein; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: Bphy_2331
symbol: Bphy_2331
gene_biotype: protein_coding
description:
  PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: bxe:Bxe_A3814 putative hydroxymethylpyrimidine kinase.


ensembl_gene_id: Bphy_2333
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: Bphy_2334
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: Bphy_2337
symbol: Bphy_2337
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A2211 major facilitator superfamily (MFS)nitrate/nitrite transporter, NarK/NasA family.


ensembl_gene_id: Bphy_2339
symbol: Bphy_2339
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B2619 ABC D-xylose transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Bphy_2340
symbol: xylG
gene_biotype: protein_coding
description:
  D-xylose ABC transporter, ATPase subunit; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.


ensembl_gene_id: Bphy_2341
symbol: Bphy_2341
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_B2621 ABC xylose transporter, periplasmic ligand binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Bphy_2342
symbol: xylA
gene_biotype: protein_coding
description:
  KEGG: bch:Bcen2424_6740 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.


ensembl_gene_id: Bphy_2343
symbol: Bphy_2343
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_B2623 transcriptional regulator, AraC family.


ensembl_gene_id: Bphy_2346
symbol: Bphy_2346
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B2319 putative short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Bphy_2349
symbol: Bphy_2349
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bvi:Bcep1808_3824 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Bphy_2350
symbol: Bphy_2350
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bch:Bcen2424_5659 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Bphy_2351
symbol: Bphy_2351
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bch:Bcen2424_5658 extracellular solute-binding protein, family 1.


ensembl_gene_id: Bphy_2352
symbol: Bphy_2352
gene_biotype: protein_coding
description:
  Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bam:Bamb_4931 beta-galactosidase.


ensembl_gene_id: Bphy_2353
symbol: Bphy_2353
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_4930 ABC transporter related.


ensembl_gene_id: Bphy_2354
symbol: Bphy_2354
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bvi:Bcep1808_3829 periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Bphy_2355
symbol: Bphy_2355
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: bvi:Bcep1808_5897 putative transcriptional regulator, MerR family.


ensembl_gene_id: Bphy_2356
symbol: Bphy_2356
gene_biotype: protein_coding
description:
  Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: pfl:PFL_3308 diguanylate cyclase, putative.


ensembl_gene_id: Bphy_2357
symbol: Bphy_2357
gene_biotype: protein_coding
description:
  KEGG: xac:XAC2555 sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: Bphy_2359
symbol: Bphy_2359
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reh:H16_A0618 NADPH:quinone reductase or related Zn-dependent oxidoreductase.


ensembl_gene_id: Bphy_2360
symbol: Bphy_2360
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pna:Pnap_4000 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.


ensembl_gene_id: Bphy_2362
symbol: Bphy_2362
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bur:Bcep18194_B2574 5-oxoprolinase (ATP-hydrolyzing).


ensembl_gene_id: Bphy_2363
symbol: Bphy_2363
gene_biotype: protein_coding
description:
  PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2575 major facilitator superfamily (MFS_1) transporter.


ensembl_gene_id: Bphy_2364
symbol: Bphy_2364
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1445; KEGG: bur:Bcep18194_B2576 hypothetical protein; Belongs to the D-glutamate cyclase family.


ensembl_gene_id: Bphy_2365
symbol: Bphy_2365
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5281 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_2368
symbol: Bphy_2368
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bch:Bcen2424_4340 polar amino acid ABC transporter, inner membrane subunit.


ensembl_gene_id: Bphy_2369
symbol: Bphy_2369
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: bch:Bcen2424_4339 extracellular solute-binding protein, family 3.


ensembl_gene_id: Bphy_2370
symbol: Bphy_2370
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bch:Bcen2424_4338 transcriptional regulator, IclR family.


ensembl_gene_id: Bphy_2371
symbol: Bphy_2371
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_1648 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Bphy_2377
symbol: Bphy_2377
gene_biotype: protein_coding
description:
  Cellulose synthase (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; KEGG: reu:Reut_C6029 cellulose synthase (UDP-forming).


ensembl_gene_id: Bphy_2378
symbol: Bphy_2378
gene_biotype: protein_coding
description:
  Cellulase; PFAM: glycoside hydrolase family 8; KEGG: xac:XAC3516 cellulase; Belongs to the glycosyl hydrolase 8 (cellulase D) family.


ensembl_gene_id: Bphy_2379
symbol: Bphy_2379
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bam:Bamb_4293 glucose-methanol-choline oxidoreductase.


ensembl_gene_id: Bphy_2380
symbol: Bphy_2380
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4294 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Bphy_2381
symbol: Bphy_2381
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4295 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Bphy_2382
symbol: Bphy_2382
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_4296 ABC spermidine/putrescine transporter, periplasmic ligand binding protein.


ensembl_gene_id: Bphy_2384
symbol: Bphy_2384
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_4298 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Bphy_2385
symbol: Bphy_2385
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4299 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_2393
symbol: Bphy_2393
gene_biotype: protein_coding
description:
  PFAM: Malate/L-lactate dehydrogenase; KEGG: vei:Veis_4538 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: Bphy_2394
symbol: Bphy_2394
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0325 transcriptional regulator, LysR-family.


ensembl_gene_id: Bphy_2397
symbol: Bphy_2397
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aba:Acid345_4738 sulfate transporter.


ensembl_gene_id: Bphy_2402
symbol: Bphy_2402
gene_biotype: protein_coding
description:
  TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: bxe:Bxe_B0213 putative glycogen debranching protein.


ensembl_gene_id: Bphy_2403
symbol: Bphy_2403
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_B2058 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Bphy_2404
symbol: Bphy_2404
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bxe:Bxe_B2059 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Bphy_2408
symbol: Bphy_2408
gene_biotype: protein_coding
description:
  PFAM: Ferritin Dps family protein; KEGG: reu:Reut_A1742 ferritin and Dps; Belongs to the Dps family.


ensembl_gene_id: Bphy_2409
symbol: Bphy_2409
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gur:Gura_0526 RND efflux system, outer membrane lipoprotein, NodT family.


ensembl_gene_id: Bphy_2410
symbol: Bphy_2410
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gur:Gura_0527 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Bphy_2411
symbol: Bphy_2411
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: cvi:CV_1626 probable multidrug efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Bphy_2412
symbol: Bphy_2412
gene_biotype: protein_coding
description:
  PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bxe:Bxe_A3877 putative amino acid exporter, RhtB family, LysE superfamily.


ensembl_gene_id: Bphy_2413
symbol: Bphy_2413
gene_biotype: protein_coding
description:
  TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: har:HEAR3307 chloramphenicol resistance protein.


ensembl_gene_id: Bphy_2416
symbol: Bphy_2416
gene_biotype: protein_coding
description:
  PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bxe:Bxe_A3880 putative periplasmic protein.


ensembl_gene_id: Bphy_2419
symbol: Bphy_2419
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A3883 transcriptional regulator, LysR family.


ensembl_gene_id: Bphy_2421
symbol: Bphy_2421
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A3885 xanthine dehydrogenase; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.


ensembl_gene_id: Bphy_2422
symbol: Bphy_2422
gene_biotype: protein_coding
description:
  TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: bxe:Bxe_A3886 putative xanthine dehydrogenase.


