# geneInfo

ensembl_gene_id: RBY4I_1
symbol: RBY4I_1
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein, family 1; [G] COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: RBY4I_1004
symbol: EDZ45794.1
gene_biotype: protein_coding
description:
  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.


ensembl_gene_id: RBY4I_101
symbol: RBY4I_101
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_1010
symbol: EDZ45800.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_1011
symbol: bdh_2
gene_biotype: protein_coding
description:
  [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: RBY4I_1013
symbol: EDZ45803.1
gene_biotype: protein_coding
description:
  Possible transporter, RhaT family, DMT superfamily; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_1015
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: RBY4I_1022
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: RBY4I_1023
symbol: groS_2
gene_biotype: protein_coding
description:
  Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: RBY4I_1025
symbol: coxB
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: RBY4I_1026
symbol: EDZ45816.1
gene_biotype: protein_coding
description:
  [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RBY4I_1027
symbol: EDZ45817.1
gene_biotype: protein_coding
description:
  Response regulator receiver protein, putative; [K] COG2771 DNA-binding HTH domain-containing proteins.


ensembl_gene_id: RBY4I_1029
symbol: EDZ45819.1
gene_biotype: protein_coding
description:
  2',3'-cyclic-nucleotide 2'-phosphodiesterase; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: RBY4I_1030
symbol: EDZ45820.1
gene_biotype: protein_coding
description:
  Alpha-2-macroglobulin N-terminal domain family protein; [R] COG2373 Large extracellular alpha-helical protein.


ensembl_gene_id: RBY4I_1033
symbol: EDZ45822.1
gene_biotype: protein_coding
description:
  Glycine cleavage T-protein (aminomethyl transferase); [C] COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the GcvT family.


ensembl_gene_id: RBY4I_1041
symbol: EDZ45830.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.


ensembl_gene_id: RBY4I_1042
symbol: argJ
gene_biotype: protein_coding
description:
  Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: RBY4I_1045
symbol: coaX
gene_biotype: protein_coding
description:
  Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: RBY4I_1046
symbol: EDZ45835.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP-binding protein; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.


ensembl_gene_id: RBY4I_1052
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: RBY4I_1056
symbol: EDZ45845.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: RBY4I_1058
symbol: EDZ45847.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_1059
symbol: EDZ45848.1
gene_biotype: protein_coding
description:
  Putative site-specific recombinase, phage integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: RBY4I_1061
symbol: EDZ45850.1
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [E] COG4176 ABC-type proline/glycine betaine transport system, permease component.


ensembl_gene_id: RBY4I_1063
symbol: dusB
gene_biotype: protein_coding
description:
  tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: RBY4I_1064
symbol: metA
gene_biotype: protein_coding
description:
  Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.


ensembl_gene_id: RBY4I_1066
symbol: kdtA
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: RBY4I_1068
symbol: EDZ45857.1
gene_biotype: protein_coding
description:
  Integral membrane protein DUF6; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: RBY4I_107
symbol: gdhA
gene_biotype: protein_coding
description:
  [E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: RBY4I_1073
symbol: rpoD
gene_biotype: protein_coding
description:
  Sigma-70 region 3 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: RBY4I_1075
symbol: EDZ45864.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: RBY4I_1077
symbol: EDZ45866.1
gene_biotype: protein_coding
description:
  Inner-membrane translocator; [R] COG4603 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RBY4I_108
symbol: RBY4I_108
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.


ensembl_gene_id: RBY4I_1082
symbol: tsaD
gene_biotype: protein_coding
description:
  Peptidase M22, glycoprotease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: RBY4I_1083
symbol: napD_1
gene_biotype: protein_coding
description:
  Nonspecific acid phosphatase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_1084
symbol: EDZ45873.1
gene_biotype: protein_coding
description:
  Glyoxalase/bleomycin resistance protein/dioxygenase; [E] COG0346 Lactoylglutathione lyase and related lyases.


ensembl_gene_id: RBY4I_1086
symbol: ilvB
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].


ensembl_gene_id: RBY4I_1092
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: RBY4I_1093
symbol: EDZ45882.1
gene_biotype: protein_coding
description:
  Membrane protein, DMT family; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_1094
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: RBY4I_1096
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: RBY4I_1097
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: RBY4I_1098
symbol: EDZ45887.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase family protein; [R] COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase.


ensembl_gene_id: RBY4I_1099
symbol: EDZ45888.1
gene_biotype: protein_coding
description:
  Polar amino acid uptake family ABC transporter, permease protein; [E] COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: RBY4I_11
symbol: RBY4I_11
gene_biotype: protein_coding
description:
  [G] COG1175 ABC-type sugar transport systems, permease components; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_110
symbol: RBY4I_110
gene_biotype: protein_coding
description:
  Phenol hydroxylase component B; [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.


ensembl_gene_id: RBY4I_1100
symbol: napD_2
gene_biotype: protein_coding
description:
  NapD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.


ensembl_gene_id: RBY4I_1102
symbol: EDZ45891.1
gene_biotype: protein_coding
description:
  Endoribonuclease L-PSP family protein; [J] COG0251 Putative translation initiation inhibitor, yjgF family.


ensembl_gene_id: RBY4I_1107
symbol: EDZ45896.1
gene_biotype: protein_coding
description:
  Integral membrane protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_1109
symbol: EDZ45898.1
gene_biotype: protein_coding
description:
  Type III restriction enzyme, res subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_111
symbol: RBY4I_111
gene_biotype: protein_coding
description:
  UspA domain protein; [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.


ensembl_gene_id: RBY4I_1111
symbol: EDZ45900.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [S] COG3785 Uncharacterized conserved protein; hemimethylated DNA-binding region.


ensembl_gene_id: RBY4I_1115
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: RBY4I_1119
symbol: EDZ45908.1
gene_biotype: protein_coding
description:
  DNA-binding response regulator, LuxR family; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: RBY4I_1122
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: RBY4I_1124
symbol: EDZ45913.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [S] COG2606 Uncharacterized conserved protein; YbaK/prolyl-tRNA synthetase associated region.


ensembl_gene_id: RBY4I_1125
symbol: lysS
gene_biotype: protein_coding
description:
  [J] COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: RBY4I_1126
symbol: betB
gene_biotype: protein_coding
description:
  Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.


ensembl_gene_id: RBY4I_1127
symbol: sdhA
gene_biotype: protein_coding
description:
  Succinate dehydrogenase, flavoprotein subunit; [H] COG0029 Aspartate oxidase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: RBY4I_1129
symbol: metZ
gene_biotype: protein_coding
description:
  O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: RBY4I_1131
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: RBY4I_1132
symbol: rpsA
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: RBY4I_1134
symbol: EDZ45923.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: RBY4I_1135
symbol: EDZ45924.1
gene_biotype: protein_coding
description:
  Chromosomal replication initiator, DnaA; [L] COG0593 ATPase involved in DNA replication initiation; Belongs to the DnaA family.


ensembl_gene_id: RBY4I_1137
symbol: trgB
gene_biotype: protein_coding
description:
  Tellurite resistance protein; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: RBY4I_1138
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.


ensembl_gene_id: RBY4I_1140
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: RBY4I_1141
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: RBY4I_1143
symbol: cobA_1
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; [H] COG1010 Precorrin-3B methylase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: RBY4I_1147
symbol: EDZ45936.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.


ensembl_gene_id: RBY4I_1149
symbol: rpoH
gene_biotype: protein_coding
description:
  Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: RBY4I_1154
symbol: qacE
gene_biotype: protein_coding
description:
  Quaternary ammonium compound-resistance protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_1157
symbol: fucA
gene_biotype: protein_coding
description:
  L-fuculose phosphate aldolase; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.


ensembl_gene_id: RBY4I_1160
symbol: EDZ45949.1
gene_biotype: protein_coding
description:
  Invasion protein IbeA; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: RBY4I_1161
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: RBY4I_1162
symbol: EDZ45951.1
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_1163
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: RBY4I_117
symbol: RBY4I_117
gene_biotype: protein_coding
description:
  Putative carboxylesterase protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: RBY4I_1172
symbol: cas5e
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas5, Ecoli subtype; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_1173
symbol: EDZ45962.1
gene_biotype: protein_coding
description:
  Alkaline phosphatase synthesis sensor protein PhoR; [T] COG0642 Signal transduction histidine kinase.


ensembl_gene_id: RBY4I_1174
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: RBY4I_1175
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB.


ensembl_gene_id: RBY4I_1176
symbol: EDZ45965.1
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: RBY4I_1178
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: RBY4I_1179
symbol: petR
gene_biotype: protein_coding
description:
  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: RBY4I_1181
symbol: EDZ45970.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: RBY4I_1182
symbol: purB
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; [C] COG0114 Fumarase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: RBY4I_1184
symbol: EDZ45973.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: RBY4I_1191
symbol: hpaE
gene_biotype: protein_coding
description:
  5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RBY4I_1193
symbol: tatA
gene_biotype: protein_coding
description:
  mttA/Hcf106 family, putative; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: RBY4I_1196
symbol: deaD
gene_biotype: protein_coding
description:
  RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.


ensembl_gene_id: RBY4I_1199
symbol: EDZ45988.1
gene_biotype: protein_coding
description:
  Sarcosine oxidase, alpha subunit family; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.


ensembl_gene_id: RBY4I_1201
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase i, h subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: RBY4I_1202
symbol: EDZ45991.1
gene_biotype: protein_coding
description:
  Putative trap-type c4-dicarboxylate transport system, small permease component; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_1204
symbol: EDZ45992.1
gene_biotype: protein_coding
description:
  [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.


ensembl_gene_id: RBY4I_1205
symbol: EDZ45993.1
gene_biotype: protein_coding
description:
  Rieske (2Fe-2S) domain protein; [PR] COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.


ensembl_gene_id: RBY4I_1206
symbol: EDZ45994.1
gene_biotype: protein_coding
description:
  Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.


ensembl_gene_id: RBY4I_1211
symbol: obg
gene_biotype: protein_coding
description:
  GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: RBY4I_1212
symbol: EDZ46000.1
gene_biotype: protein_coding
description:
  Acetyltransferase, gnat family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.


ensembl_gene_id: RBY4I_1213
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase B' chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: RBY4I_1215
symbol: sitD
gene_biotype: protein_coding
description:
  ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component.


ensembl_gene_id: RBY4I_1222
symbol: proV
gene_biotype: protein_coding
description:
  Glycine betaine/L-proline ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.


ensembl_gene_id: RBY4I_1224
symbol: EDZ46012.1
gene_biotype: protein_coding
description:
  glutamyl-Q tRNA(Asp) synthetase; [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: RBY4I_1226
symbol: rocF
gene_biotype: protein_coding
description:
  Arginase; [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.


ensembl_gene_id: RBY4I_1233
symbol: mutT
gene_biotype: protein_coding
description:
  Mutator MutT protein; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: RBY4I_1237
symbol: EDZ46025.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.


ensembl_gene_id: RBY4I_124
symbol: repA_3
gene_biotype: protein_coding
description:
  RepA partitioning protein/ATPase, ParA type; [D] COG1192 ATPases involved in chromosome partitioning.


ensembl_gene_id: RBY4I_1240
symbol: EDZ46028.1
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RBY4I_1241
symbol: fhs_2
gene_biotype: protein_coding
description:
  Formate--tetrahydrofolate ligase; [F] COG2759 Formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family.


ensembl_gene_id: RBY4I_1242
symbol: EDZ46030.1
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110kDa subunit; [O] COG3914 Predicted O-linked N-acetylglucosamine transferase, SPINDLY family.


ensembl_gene_id: RBY4I_1249
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: RBY4I_1253
symbol: napB
gene_biotype: protein_coding
description:
  Periplasmic nitrate reductase, diheme cytochrome c subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.


ensembl_gene_id: RBY4I_1265
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: RBY4I_1266
symbol: EDZ46054.1
gene_biotype: protein_coding
description:
  [G] COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: RBY4I_1267
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: RBY4I_1271
symbol: EDZ46059.1
gene_biotype: protein_coding
description:
  Tripartite ATP-independent periplasmic transporter, DctQ component; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.


ensembl_gene_id: RBY4I_1273
symbol: EDZ46061.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [OU] COG1585 Membrane protein implicated in regulation of membrane protease activity.


ensembl_gene_id: RBY4I_1275
symbol: EDZ46063.1
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [G] COG0395 ABC-type sugar transport system, permease component.


ensembl_gene_id: RBY4I_1280
symbol: fdhB
gene_biotype: protein_coding
description:
  Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.


ensembl_gene_id: RBY4I_1281
symbol: EDZ46069.1
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase domain protein; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes.


ensembl_gene_id: RBY4I_1286
symbol: EDZ46074.1
gene_biotype: protein_coding
description:
  Inner-membrane translocator; [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RBY4I_1294
symbol: EDZ46082.1
gene_biotype: protein_coding
description:
  Peroxiredoxin TPx2; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.


ensembl_gene_id: RBY4I_1298
symbol: EDZ46086.1
gene_biotype: protein_coding
description:
  Drug resistance transporter, Bcr/CflA subfamily; [GEPR] COG0477 Permeases of the major facilitator superfamily.


ensembl_gene_id: RBY4I_1303
symbol: ubiG
gene_biotype: protein_coding
description:
  3-demethylubiquinone-9 3-O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: RBY4I_1304
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: RBY4I_1305
symbol: EDZ46093.1
gene_biotype: protein_coding
description:
  Hemin import ATP-binding protein HmuV; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.


ensembl_gene_id: RBY4I_1308
symbol: EDZ46096.1
gene_biotype: protein_coding
description:
  Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase subfamily, putative; [R] COG4927 Predicted choloylglycine hydrolase.


ensembl_gene_id: RBY4I_1309
symbol: hslV
gene_biotype: protein_coding
description:
  ATP-dependent protease HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: RBY4I_1311
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: RBY4I_1317
symbol: hslO
gene_biotype: protein_coding
description:
  Chaperonin HslO; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.


ensembl_gene_id: RBY4I_1318
symbol: EDZ46106.1
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: RBY4I_1320
symbol: EDZ46108.1
gene_biotype: protein_coding
description:
  Sugar ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_1324
symbol: yidC
gene_biotype: protein_coding
description:
  60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: RBY4I_1327
symbol: EDZ46115.1
gene_biotype: protein_coding
description:
  Glyoxylate reductase; [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: RBY4I_1330
symbol: EDZ46118.1
gene_biotype: protein_coding
description:
  Homocysteine S-methyltransferase; [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.


ensembl_gene_id: RBY4I_1331
symbol: flgA
gene_biotype: protein_coding
description:
  Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.


ensembl_gene_id: RBY4I_1333
symbol: ccoS
gene_biotype: protein_coding
description:
  Cytochrome oxidase maturation protein, cbb3-type; [P] COG3197 Uncharacterized protein, possibly involved in nitrogen fixation.


ensembl_gene_id: RBY4I_1336
symbol: zwf_2
gene_biotype: protein_coding
description:
  Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: RBY4I_1340
symbol: pdxJ_1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthesis protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: RBY4I_1341
symbol: selO
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: RBY4I_1345
symbol: EDZ46133.1
gene_biotype: protein_coding
description:
  Serine/threonine-protein kinase RsbT; [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).


ensembl_gene_id: RBY4I_1346
symbol: EDZ46134.1
gene_biotype: protein_coding
description:
  Aminotransferase, class IV; [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.


ensembl_gene_id: RBY4I_135
symbol: RBY4I_135
gene_biotype: protein_coding
description:
  ParB-like nuclease domain family; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.


ensembl_gene_id: RBY4I_1351
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: RBY4I_1353
symbol: EDZ46141.1
gene_biotype: protein_coding
description:
  Acetyltransferase, gnat family; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: RBY4I_1357
symbol: EDZ46145.1
gene_biotype: protein_coding
description:
  Membrane protein; [Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.


ensembl_gene_id: RBY4I_1358
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: RBY4I_1363
symbol: pdxJ_2
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: RBY4I_1367
symbol: EDZ46155.1
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [P] COG4149 ABC-type molybdate transport system, permease component.


ensembl_gene_id: RBY4I_1369
symbol: EDZ46157.1
gene_biotype: protein_coding
description:
  Nitrile hydratase, beta subunit; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.


ensembl_gene_id: RBY4I_1370
symbol: EDZ46158.1
gene_biotype: protein_coding
description:
  ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.


ensembl_gene_id: RBY4I_1373
symbol: EDZ46161.1
gene_biotype: protein_coding
description:
  Inner-membrane translocator; [E] COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RBY4I_1376
symbol: folP
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: RBY4I_1381
symbol: EDZ46169.1
gene_biotype: protein_coding
description:
  YhhN-like protein; [Q] COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.


ensembl_gene_id: RBY4I_1382
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: RBY4I_1388
symbol: EDZ46176.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.


ensembl_gene_id: RBY4I_1390
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: RBY4I_1394
symbol: EDZ46182.1
gene_biotype: protein_coding
description:
  Extracellular ligand-binding receptor; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.


ensembl_gene_id: RBY4I_1402
symbol: EDZ46190.1
gene_biotype: protein_coding
description:
  Trap dicarboxylate transporter, dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.


ensembl_gene_id: RBY4I_1408
symbol: EDZ46196.1
gene_biotype: protein_coding
description:
  MotA/TolQ/ExbB proton channel family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_1409
symbol: EDZ46197.1
gene_biotype: protein_coding
description:
  Inner-membrane translocator; [G] COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RBY4I_1410
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: RBY4I_1412
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: RBY4I_1414
symbol: EDZ46202.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [R] COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis.


ensembl_gene_id: RBY4I_1416
symbol: EDZ46204.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase; [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.


ensembl_gene_id: RBY4I_1419
symbol: EDZ46207.1
gene_biotype: protein_coding
description:
  Monooxygenase domain protein; [ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.


ensembl_gene_id: RBY4I_1420
symbol: EDZ46208.1
gene_biotype: protein_coding
description:
  Tungstate ABC transporter, tungstate-binding protein; [H] COG2998 ABC-type tungstate transport system, permease component.


ensembl_gene_id: RBY4I_1421
symbol: sdhB
gene_biotype: protein_coding
description:
  [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: RBY4I_1422
symbol: EDZ46210.1
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.


ensembl_gene_id: RBY4I_1423
symbol: EDZ46211.1
gene_biotype: protein_coding
description:
  5-nucleotidase; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: RBY4I_1428
symbol: pqqC
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.


ensembl_gene_id: RBY4I_1434
symbol: EDZ46222.1
gene_biotype: protein_coding
description:
  Polar amino acid uptake family ABC transporter, ATP-binding protein; [P] COG1135 ABC-type metal ion transport system, ATPase component.


ensembl_gene_id: RBY4I_1435
symbol: cfaS
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase CfaS; [M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases.


ensembl_gene_id: RBY4I_1437
symbol: EDZ46225.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [K] COG0583 Transcriptional regulator; Belongs to the UPF0102 family.


ensembl_gene_id: RBY4I_1440
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: RBY4I_1443
symbol: EDZ46231.1
gene_biotype: protein_coding
description:
  Ferric cations import ATP-binding protein FbpC; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_1446
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: RBY4I_1447
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: RBY4I_1448
symbol: EDZ46236.1
gene_biotype: protein_coding
description:
  Integral membrane protein DUF6; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_1450
symbol: EDZ46238.1
gene_biotype: protein_coding
description:
  [S] COG2995 Uncharacterized paraquat-inducible protein A; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_1451
symbol: EDZ46239.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: RBY4I_1452
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: RBY4I_1454
symbol: EDZ46242.1
gene_biotype: protein_coding
description:
  [E] COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RBY4I_1455
symbol: EDZ46243.1
gene_biotype: protein_coding
description:
  Polyamine ABC trasnporter, periplasmic polyamine-binding protein; [E] COG0687 Spermidine/putrescine-binding periplasmic protein.


ensembl_gene_id: RBY4I_1456
symbol: EDZ46244.1
gene_biotype: protein_coding
description:
  ABC transporter, periplasmic substrate-binding protein, putative; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.


ensembl_gene_id: RBY4I_146
symbol: modC
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, ATP-binding protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.


ensembl_gene_id: RBY4I_1461
symbol: hpf
gene_biotype: protein_coding
description:
  Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: RBY4I_1462
symbol: EDZ46250.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [U] COG3210 Large exoproteins involved in heme utilization or adhesion.


ensembl_gene_id: RBY4I_1463
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: RBY4I_1473
symbol: chaC
gene_biotype: protein_coding
description:
  Cation transport protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.


ensembl_gene_id: RBY4I_1474
symbol: EDZ46262.1
gene_biotype: protein_coding
description:
  Crp-Fnr regulatory protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: RBY4I_1479
symbol: EDZ46267.1
gene_biotype: protein_coding
description:
  Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_1480
symbol: EDZ46268.1
gene_biotype: protein_coding
description:
  Nitrogen regulatory protein P-II; [J] COG0223 Methionyl-tRNA formyltransferase; Belongs to the P(II) protein family.


ensembl_gene_id: RBY4I_1481
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase.


ensembl_gene_id: RBY4I_1484
symbol: EDZ46272.1
gene_biotype: protein_coding
description:
  ABC transporter, permease/ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: RBY4I_1487
symbol: EDZ46275.1
gene_biotype: protein_coding
description:
  Sugar ABC transporter, permease protein; [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RBY4I_1488
symbol: EDZ46276.1
gene_biotype: protein_coding
description:
  Spfh domain/band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.


ensembl_gene_id: RBY4I_1491
symbol: pgsA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; [I] COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: RBY4I_1494
symbol: EDZ46282.1
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein FlgL family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: RBY4I_1497
symbol: hemA
gene_biotype: protein_coding
description:
  5-aminolevulinic acid synthase; [H] COG0156 7-keto-8-aminopelargonate synthetase and related enzymes.


ensembl_gene_id: RBY4I_1499
symbol: EDZ46287.1
gene_biotype: protein_coding
description:
  Aminotransferase, class V; [E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.


ensembl_gene_id: RBY4I_1502
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: RBY4I_1503
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: RBY4I_1505
symbol: ispDF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF); Belongs to the IspF family.  In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.


ensembl_gene_id: RBY4I_1507
symbol: EDZ46295.1
gene_biotype: protein_coding
description:
  (Uracil-5)-methyltransferase; [J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: RBY4I_1508
symbol: EDZ46296.1
gene_biotype: protein_coding
description:
  5-carboxymethyl-2-hydroxymuconate delta-isomerase; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).


ensembl_gene_id: RBY4I_151
symbol: RBY4I_151
gene_biotype: protein_coding
description:
  Type VI secretion-associated protein, ImpA family; [S] COG3515 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_1510
symbol: EDZ46298.1
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II.


ensembl_gene_id: RBY4I_1511
symbol: EDZ46299.1
gene_biotype: protein_coding
description:
  Oxidoreductase, FAD/FMN-binding family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.


ensembl_gene_id: RBY4I_1516
symbol: lpdA_3
gene_biotype: protein_coding
description:
  [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: RBY4I_1517
symbol: cobB-2
gene_biotype: protein_coding
description:
  [K] COG0846 NAD-dependent protein deacetylases, SIR2 family; Belongs to the sirtuin family. Class III subfamily.


ensembl_gene_id: RBY4I_1519
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: RBY4I_1520
symbol: minC
gene_biotype: protein_coding
description:
  Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: RBY4I_1524
symbol: EDZ46312.1
gene_biotype: protein_coding
description:
  Hydrolase, alpha/beta fold family; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: RBY4I_1527
symbol: ilvD
gene_biotype: protein_coding
description:
  [EG] COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: RBY4I_1528
symbol: EDZ46316.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP-binding protein; [G] COG1129 ABC-type sugar transport system, ATPase component.


ensembl_gene_id: RBY4I_1529
symbol: EDZ46317.1
gene_biotype: protein_coding
description:
  XdhC/CoxI family protein; [O] COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.


ensembl_gene_id: RBY4I_1534
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: RBY4I_1535
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: RBY4I_1536
symbol: secG
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: RBY4I_1537
symbol: EDZ46325.1
gene_biotype: protein_coding
description:
  3-ketoacyl-CoA thiolase; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RBY4I_1538
symbol: EDZ46326.1
gene_biotype: protein_coding
description:
  D-alanine aminotransferase; [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.


ensembl_gene_id: RBY4I_1541
symbol: flgK
gene_biotype: protein_coding
description:
  [N] COG1256 Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RBY4I_1542
symbol: EDZ46330.1
gene_biotype: protein_coding
description:
  [H] COG5598 Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family.


ensembl_gene_id: RBY4I_1543
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: RBY4I_1546
symbol: EDZ46334.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [L] COG2963 Transposase and inactivated derivatives; transposase and inactivated derivative.


ensembl_gene_id: RBY4I_1547
symbol: EDZ46335.1
gene_biotype: protein_coding
description:
  Cell division protease FtsH, putative; [O] COG0465 ATP-dependent Zn proteases; Belongs to the AAA ATPase family.


ensembl_gene_id: RBY4I_1548
symbol: EDZ46336.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: RBY4I_1550
symbol: EDZ46338.1
gene_biotype: protein_coding
description:
  Molybdopterin binding domain; [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA.


ensembl_gene_id: RBY4I_1554
symbol: EDZ46342.1
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase YihU; [I] COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.


ensembl_gene_id: RBY4I_1557
symbol: EDZ46345.1
gene_biotype: protein_coding
description:
  Sodium:galactoside symporter family protein; [G] COG2211 Na+/melibiose symporter and related transporters.


ensembl_gene_id: RBY4I_1559
symbol: EDZ46347.1
gene_biotype: protein_coding
description:
  UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).


ensembl_gene_id: RBY4I_156
symbol: RBY4I_156
gene_biotype: protein_coding
description:
  [M] COG1004 Predicted UDP-glucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: RBY4I_1563
symbol: lcdH
gene_biotype: protein_coding
description:
  3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.


ensembl_gene_id: RBY4I_1565
symbol: EDZ46353.1
gene_biotype: protein_coding
description:
  periplasmiC nitrate reductase c-type cytochrome, NapC/NirT family; [C] COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit.


ensembl_gene_id: RBY4I_1567
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: RBY4I_1572
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: RBY4I_1574
symbol: EDZ46361.1
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein, family 3; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: RBY4I_158
symbol: znuC
gene_biotype: protein_coding
description:
  High affinity zinc uptake system ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.


ensembl_gene_id: RBY4I_1580
symbol: EDZ46366.1
gene_biotype: protein_coding
description:
  YeeE/YedE family protein; [R] COG2391 Predicted transporter component; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_1585
symbol: nosZ
gene_biotype: protein_coding
description:
  Cytochrome C oxidase subunit II, periplasmic domain protein; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.


ensembl_gene_id: RBY4I_1589
symbol: EDZ46375.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 3; [J] COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: RBY4I_1590
symbol: EDZ46376.1
gene_biotype: protein_coding
description:
  Dehydrogenase E1 component family; [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.


ensembl_gene_id: RBY4I_1591
symbol: EDZ46377.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [L] COG2801 Transposase and inactivated derivatives; transposase and inactivated derivative.


ensembl_gene_id: RBY4I_1595
symbol: EDZ46381.1
gene_biotype: protein_coding
description:
  Ser/Thr protein phosphatase family protein; [R] COG2129 Predicted phosphoesterases, related to the Icc protein.


ensembl_gene_id: RBY4I_1596
symbol: EDZ46382.1
gene_biotype: protein_coding
description:
  Cation diffusion facilitator family transporter; [P] COG0053 Predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: RBY4I_1598
symbol: EDZ46384.1
gene_biotype: protein_coding
description:
  Glycine cleavage T-protein (aminomethyl transferase); [E] COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.


ensembl_gene_id: RBY4I_1599
symbol: EDZ46385.1
gene_biotype: protein_coding
description:
  5-methyltetrahydrofolate--homocysteine S-methyltransferase; [I] COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).


ensembl_gene_id: RBY4I_1600
symbol: EDZ46386.1
gene_biotype: protein_coding
description:
  Caax amino terminal protease family protein; [R] COG1266 Predicted metal-dependent membrane protease.


ensembl_gene_id: RBY4I_1601
symbol: EDZ46387.1
gene_biotype: protein_coding
description:
  Peptidase, M16 family; [R] COG0612 Predicted Zn-dependent peptidases; overlaps another CDS with the same product name; Belongs to the peptidase M16 family.


ensembl_gene_id: RBY4I_1603
symbol: EDZ46389.1
gene_biotype: protein_coding
description:
  [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: RBY4I_1605
symbol: EDZ46391.1
gene_biotype: protein_coding
description:
  Mrp/NBP35 family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: RBY4I_1607
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: RBY4I_1608
symbol: fabG
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RBY4I_1610
symbol: EDZ46396.1
gene_biotype: protein_coding
description:
  Metallophosphoesterase; [T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.


ensembl_gene_id: RBY4I_1611
symbol: thiB
gene_biotype: protein_coding
description:
  Thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein; [P] COG1840 ABC-type Fe3+ transport system, periplasmic component.


ensembl_gene_id: RBY4I_1612
symbol: EDZ46398.1
gene_biotype: protein_coding
description:
  Ribosomal protein L35; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_1618
symbol: EDZ46404.1
gene_biotype: protein_coding
description:
  Rhodocoxin reductase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: RBY4I_162
symbol: clpV
gene_biotype: protein_coding
description:
  Type VI secretion ATPase, ClpV1 family; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.


ensembl_gene_id: RBY4I_1620
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: RBY4I_1624
symbol: EDZ46410.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.


ensembl_gene_id: RBY4I_1626
symbol: pheS
gene_biotype: protein_coding
description:
  [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: RBY4I_1627
symbol: EDZ46413.1
gene_biotype: protein_coding
description:
  Enoyl-(acyl-carrier-protein) reductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: RBY4I_1629
symbol: EDZ46415.1
gene_biotype: protein_coding
description:
  Trap transporter solute receptor, taxi family; [R] COG2358 TRAP-type uncharacterized transport system, periplasmic component.


ensembl_gene_id: RBY4I_1631
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: RBY4I_1632
symbol: EDZ46418.1
gene_biotype: protein_coding
description:
  Esterase EstC, putative; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: RBY4I_1633
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: RBY4I_1634
symbol: opuD
gene_biotype: protein_coding
description:
  [M] COG1292 Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: RBY4I_1635
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: RBY4I_1637
symbol: EDZ46423.1
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).


ensembl_gene_id: RBY4I_1643
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: RBY4I_1646
symbol: hemK
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: RBY4I_1648
symbol: EDZ46434.1
gene_biotype: protein_coding
description:
  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.


ensembl_gene_id: RBY4I_1652
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: RBY4I_1653
symbol: addA
gene_biotype: protein_coding
description:
  Double-strand break repair helicase AddA; [L] COG0210 Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: RBY4I_1655
symbol: EDZ46441.1
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein, family 7; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.


ensembl_gene_id: RBY4I_1659
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: RBY4I_166
symbol: RBY4I_166
gene_biotype: protein_coding
description:
  Type VI secretion-associated protein, BMA_A0400 family; [S] COG3913 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_1660
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: RBY4I_1663
symbol: EDZ46449.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain); DUF58.


ensembl_gene_id: RBY4I_1666
symbol: EDZ46452.1
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: RBY4I_1669
symbol: EDZ46455.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [S] COG4949 Uncharacterized membrane-anchored protein conserved in bacteria.


ensembl_gene_id: RBY4I_167
symbol: RBY4I_167
gene_biotype: protein_coding
description:
  Type VI secretion protein, VC_A0114 family; [S] COG3522 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_1673
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: RBY4I_1675
symbol: EDZ46461.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: RBY4I_1680
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: RBY4I_1684
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: RBY4I_1688
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: RBY4I_1689
symbol: luxR
gene_biotype: protein_coding
description:
  Autoinducer-binding transcriptional regulator LuxR; [K] COG2771 DNA-binding HTH domain-containing proteins.


ensembl_gene_id: RBY4I_1692
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: RBY4I_1694
symbol: bioC
gene_biotype: protein_coding
description:
  Biotin biosynthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.


ensembl_gene_id: RBY4I_170
symbol: znuA
gene_biotype: protein_coding
description:
  Zinc ABC transporter, periplasmic zinc-binding protein; [P] COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin.


ensembl_gene_id: RBY4I_1700
symbol: tkt
gene_biotype: protein_coding
description:
  Transketolase; [C] COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component; Belongs to the transketolase family.


ensembl_gene_id: RBY4I_1703
symbol: tuf_1
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: RBY4I_1707
symbol: EDZ46492.1
gene_biotype: protein_coding
description:
  Response regulator receiver domain protein; [S] COG3558 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_1709
symbol: phbA_2
gene_biotype: protein_coding
description:
  [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RBY4I_171
symbol: cheR
gene_biotype: protein_coding
description:
  Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.


ensembl_gene_id: RBY4I_1710
symbol: pobA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate 3-monooxygenase; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.


ensembl_gene_id: RBY4I_1712
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: RBY4I_1713
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: RBY4I_1726
symbol: hisD_1
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: RBY4I_1727
symbol: EDZ46512.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family.


ensembl_gene_id: RBY4I_1729
symbol: EDZ46514.1
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.


ensembl_gene_id: RBY4I_1730
symbol: purH
gene_biotype: protein_coding
description:
  Bifunctional purine biosynthesis protein PurH; [F] COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful).


ensembl_gene_id: RBY4I_1734
symbol: EDZ46519.1
gene_biotype: protein_coding
description:
  Sugar ABC transporter, ATP-binding protein; [R] COG3845 ABC-type uncharacterized transport systems, ATPase components.


ensembl_gene_id: RBY4I_1736
symbol: EDZ46521.1
gene_biotype: protein_coding
description:
  Choline/carnitine/betaine transport; [ER] COG0591 Na+/proline symporter; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: RBY4I_1745
symbol: EDZ46530.1
gene_biotype: protein_coding
description:
  Polyhydroxyalkonate synthesis repressor, PhaR; [S] COG5394 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_1746
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: RBY4I_1751
symbol: grpE
gene_biotype: protein_coding
description:
  Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...]


ensembl_gene_id: RBY4I_1754
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: RBY4I_1755
symbol: EDZ46539.1
gene_biotype: protein_coding
description:
  Mechanosensitive ion channel family protein; [M] COG3264 Small-conductance mechanosensitive channel.


ensembl_gene_id: RBY4I_1758
symbol: msrP
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to re [...]


ensembl_gene_id: RBY4I_1759
symbol: ccoP
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.


ensembl_gene_id: RBY4I_1761
symbol: atpF-2
gene_biotype: protein_coding
description:
  ATP synthase B chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: RBY4I_1762
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: RBY4I_1768
symbol: nuoF
gene_biotype: protein_coding
description:
  NADH oxidoreductase (quinone), F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: RBY4I_1769
symbol: EDZ46553.1
gene_biotype: protein_coding
description:
  Aminotransferase class-III; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RBY4I_1774
symbol: glnD
gene_biotype: protein_coding
description:
  protein-P-II uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.


ensembl_gene_id: RBY4I_1775
symbol: EDZ46559.1
gene_biotype: protein_coding
description:
  Polar amino acid ABC transporter, inner membrane subunit; [E] COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: RBY4I_1776
symbol: EDZ46560.1
gene_biotype: protein_coding
description:
  Transglutaminase-like superfamily protein; [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases.


ensembl_gene_id: RBY4I_1778
symbol: EDZ46562.1
gene_biotype: protein_coding
description:
  LSU ribosomal protein L7AE; [K] COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination.


ensembl_gene_id: RBY4I_1779
symbol: EDZ46563.1
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IA, variant 1; [R] COG0637 Predicted phosphatase/phosphohexomutase.


ensembl_gene_id: RBY4I_178
symbol: modB
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: RBY4I_1781
symbol: accC
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: RBY4I_1785
symbol: EDZ46569.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; [M] COG5009 Membrane carboxypeptidase/penicillin-binding protein.


ensembl_gene_id: RBY4I_1786
symbol: ctaD_1
gene_biotype: protein_coding
description:
  [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: RBY4I_1787
symbol: EDZ46571.1
gene_biotype: protein_coding
description:
  Outer membrane efflux protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_179
symbol: cheB
gene_biotype: protein_coding
description:
  Protein-glutamate methylesterase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.


ensembl_gene_id: RBY4I_1791
symbol: EDZ46575.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 32 subunit, RpoH; [K] COG1191 DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family.


ensembl_gene_id: RBY4I_1792
symbol: crcB
gene_biotype: protein_coding
description:
  crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: RBY4I_1793
symbol: EDZ46577.1
gene_biotype: protein_coding
description:
  ABC transporter, periplasmic substrate-binding protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.


ensembl_gene_id: RBY4I_1795
symbol: galU
gene_biotype: protein_coding
description:
  UTP-glucose-1-phosphate uridylyltransferase; [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).


ensembl_gene_id: RBY4I_180
symbol: vasA
gene_biotype: protein_coding
description:
  Type VI secretion protein, VC_A0110 family; [S] COG3519 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_1802
symbol: EDZ46586.1
gene_biotype: protein_coding
description:
  Trimethylamine methyltransferase family protein; [S] COG1385 Uncharacterized protein conserved in bacteria; Belongs to the trimethylamine methyltransferase family.


ensembl_gene_id: RBY4I_1803
symbol: cobF
gene_biotype: protein_coding
description:
  precorrin-6A synthase (deacetylating); Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.


ensembl_gene_id: RBY4I_1805
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: RBY4I_1807
symbol: argD
gene_biotype: protein_coding
description:
  Acetylornithine aminotransferase; [H] COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: RBY4I_1809
symbol: EDZ46593.1
gene_biotype: protein_coding
description:
  Glutamine amidotransferase class-II domain protein; [R] COG0121 Predicted glutamine amidotransferase.


ensembl_gene_id: RBY4I_1811
symbol: EDZ46595.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: RBY4I_1816
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: RBY4I_1817
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.


ensembl_gene_id: RBY4I_1818
symbol: EDZ46602.1
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase/homocitrate synthase family protein; [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: RBY4I_1819
symbol: lexA
gene_biotype: protein_coding
description:
  LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: RBY4I_1821
symbol: dapD
gene_biotype: protein_coding
description:
  [E] COG2171 Tetrahydrodipicolinate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: RBY4I_1824
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: RBY4I_1827
symbol: gpt
gene_biotype: protein_coding
description:
  Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.


ensembl_gene_id: RBY4I_183
symbol: cheD
gene_biotype: protein_coding
description:
  Chemotaxis protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: RBY4I_1830
symbol: yacG
gene_biotype: protein_coding
description:
  Conserved domain protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.


ensembl_gene_id: RBY4I_1833
symbol: EDZ46617.1
gene_biotype: protein_coding
description:
  Bifunctional hemolysin-adenylate cyclase (Cyclolysin) (ACT)(AC-HLY); [Q] COG2931 RTX toxins and related Ca2+-binding proteins.


ensembl_gene_id: RBY4I_1838
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: RBY4I_1840
symbol: EDZ46623.1
gene_biotype: protein_coding
description:
  Transglycosylase SLT domain protein; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).


ensembl_gene_id: RBY4I_1843
symbol: cyoE
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.


ensembl_gene_id: RBY4I_185
symbol: RBY4I_185
gene_biotype: protein_coding
description:
  [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.


ensembl_gene_id: RBY4I_1851
symbol: EDZ46634.1
gene_biotype: protein_coding
description:
  Amidase; [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; Belongs to the amidase family.


ensembl_gene_id: RBY4I_1855
symbol: EDZ46638.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD core; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: RBY4I_1856
symbol: EDZ46639.1
gene_biotype: protein_coding
description:
  Cupin domain protein; [S] COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain.


ensembl_gene_id: RBY4I_1858
symbol: parB
gene_biotype: protein_coding
description:
  Chromosome partitioning protein ParB; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.


ensembl_gene_id: RBY4I_1860
symbol: EDZ46643.1
gene_biotype: protein_coding
description:
  DMT superfamily, permease; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_1861
symbol: napA
gene_biotype: protein_coding
description:
  Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.


ensembl_gene_id: RBY4I_1868
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: RBY4I_1870
symbol: EDZ46653.1
gene_biotype: protein_coding
description:
  [S] COG2135 Uncharacterized conserved protein; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: RBY4I_1874
symbol: EDZ46657.1
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: RBY4I_1876
symbol: EDZ46659.1
gene_biotype: protein_coding
description:
  Aminotransferase, class V; [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.


ensembl_gene_id: RBY4I_1880
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: RBY4I_1881
symbol: EDZ46664.1
gene_biotype: protein_coding
description:
  BolA family protein; [K] COG5007 Predicted transcriptional regulator, BolA superfamily; Belongs to the BolA/IbaG family.


ensembl_gene_id: RBY4I_1884
symbol: pal
gene_biotype: protein_coding
description:
  OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: RBY4I_1888
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; [I] COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit; Belongs to the GARS family.


ensembl_gene_id: RBY4I_189
symbol: xdhB_2
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase, molybdopterin binding subunit; [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.


ensembl_gene_id: RBY4I_1890
symbol: EDZ46673.1
gene_biotype: protein_coding
description:
  Peptide/nickel/opine uptake family ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_1892
symbol: EDZ46675.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP-binding protein; [R] COG3845 ABC-type uncharacterized transport systems, ATPase components.


ensembl_gene_id: RBY4I_1895
symbol: gshB
gene_biotype: protein_coding
description:
  [HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: RBY4I_1896
symbol: EDZ46679.1
gene_biotype: protein_coding
description:
  Efflux ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: RBY4I_190
symbol: RBY4I_190
gene_biotype: protein_coding
description:
  Type VI secretion protein, VC_A0107 family; [S] COG3516 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_1901
symbol: EDZ46684.1
gene_biotype: protein_coding
description:
  Aminotransferase, DegT/DnrJ/EryC1/StrS family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: RBY4I_1902
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: RBY4I_1903
symbol: rsgA
gene_biotype: protein_coding
description:
  Probable GTPase EngC protein 2; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: RBY4I_1906
symbol: bioA
gene_biotype: protein_coding
description:
  Adenosylmethionine-8-amino-7-oxononanoate transaminase; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RBY4I_1909
symbol: EDZ46692.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter; [G] COG1129 ABC-type sugar transport system, ATPase component.


ensembl_gene_id: RBY4I_191
symbol: RBY4I_191
gene_biotype: protein_coding
description:
  Type VI secretion system FHA domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_1910
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: RBY4I_1913
symbol: EDZ46696.1
gene_biotype: protein_coding
description:
  Succinoglycan biosynthesis transport protein ExoP, putative; [D] COG2894 Septum formation inhibitor-activating ATPase.


ensembl_gene_id: RBY4I_1915
symbol: EDZ46698.1
gene_biotype: protein_coding
description:
  Mandelate racemase/muconate lactonizing enzyme family protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.


ensembl_gene_id: RBY4I_1924
symbol: EDZ46707.1
gene_biotype: protein_coding
description:
  Transglutaminase domain protein; [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases.


ensembl_gene_id: RBY4I_1925
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: RBY4I_1928
symbol: ribH-2
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: RBY4I_1929
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: RBY4I_1935
symbol: EDZ46718.1
gene_biotype: protein_coding
description:
  Lytic murein transglycosylase; [M] COG3409 Putative peptidoglycan-binding domain-containing protein.


ensembl_gene_id: RBY4I_1938
symbol: EDZ46721.1
gene_biotype: protein_coding
description:
  N-terminal double-transmembrane domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_1942
symbol: EDZ46725.1
gene_biotype: protein_coding
description:
  S6 modification enzyme RimK; [HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase).


ensembl_gene_id: RBY4I_1944
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: RBY4I_1945
symbol: EDZ46728.1
gene_biotype: protein_coding
description:
  5,10-methenyltetrahydrofolate synthetase; [H] COG0212 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: RBY4I_1946
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: RBY4I_1947
symbol: kdsD
gene_biotype: protein_coding
description:
  Arabinose 5-phosphate isomerase; [R] COG0517 FOG: CBS domain; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: RBY4I_1948
symbol: EDZ46731.1
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; [E] COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: RBY4I_1952
symbol: argE_1
gene_biotype: protein_coding
description:
  [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: RBY4I_1953
symbol: EDZ46736.1
gene_biotype: protein_coding
description:
  [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RBY4I_1954
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas1; [L] COG1518 Uncharacterized protein predicted to be involved in DNA repair.


ensembl_gene_id: RBY4I_1958
symbol: EDZ46741.1
gene_biotype: protein_coding
description:
  Trap transporter solute receptor, dctp family; [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.


ensembl_gene_id: RBY4I_1959
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: RBY4I_196
symbol: RBY4I_196
gene_biotype: protein_coding
description:
  OmpA/MotB domain protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.


ensembl_gene_id: RBY4I_1964
symbol: trmU
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: RBY4I_1968
symbol: EDZ46751.1
gene_biotype: protein_coding
description:
  AzlC family protein; [E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance).


ensembl_gene_id: RBY4I_1969
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: RBY4I_197
symbol: RBY4I_197
gene_biotype: protein_coding
description:
  Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.


ensembl_gene_id: RBY4I_1970
symbol: EDZ46753.1
gene_biotype: protein_coding
description:
  Aminotransferase family protein; [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.


ensembl_gene_id: RBY4I_1975
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: RBY4I_1977
symbol: EDZ46760.1
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: RBY4I_1978
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: RBY4I_1980
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: RBY4I_1981
symbol: EDZ46764.1
gene_biotype: protein_coding
description:
  Multiple resistance and pH regulation protein F; [P] COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit.


ensembl_gene_id: RBY4I_1987
symbol: EDZ46770.1
gene_biotype: protein_coding
description:
  Potassium efflux system protein; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: RBY4I_1991
symbol: EDZ46774.1
gene_biotype: protein_coding
description:
  Lipid A export ATP-binding/permease protein MsbA; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: RBY4I_1995
symbol: EDZ46778.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.


ensembl_gene_id: RBY4I_1997
symbol: EDZ46780.1
gene_biotype: protein_coding
description:
  Antibiotic biosynthesis monooxygenase; [R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides.


ensembl_gene_id: RBY4I_1998
symbol: gap_3
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase, type I; [G] COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: RBY4I_20
symbol: RBY4I_20
gene_biotype: protein_coding
description:
  Transcriptional regulator, arac family, putative; [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.


ensembl_gene_id: RBY4I_200
symbol: RBY4I_200
gene_biotype: protein_coding
description:
  Type VI secretion protein, VC_A0111 family; [S] COG3520 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_2003
symbol: EDZ46786.1
gene_biotype: protein_coding
description:
  Peptidase S10, Flavivirus NS3 serine protease, putative; [QR] COG0500 SAM-dependent methyltransferases.


ensembl_gene_id: RBY4I_2004
symbol: pntA_1
gene_biotype: protein_coding
description:
  NAD(P)(+) transhydrogenase (AB-specific), alpha subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the AlaDH/PNT family.


ensembl_gene_id: RBY4I_2011
symbol: EDZ46794.1
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [E] COG0687 Spermidine/putrescine-binding periplasmic protein.


ensembl_gene_id: RBY4I_2013
symbol: EDZ46796.1
gene_biotype: protein_coding
description:
  Methyltransferase small; [J] COG2813 16S RNA G1207 methylase RsmC; Belongs to the methyltransferase superfamily.


ensembl_gene_id: RBY4I_202
symbol: RBY4I_202
gene_biotype: protein_coding
description:
  Putative addiction module antidote protein, CC2985 family; [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.


ensembl_gene_id: RBY4I_2020
symbol: EDZ46803.1
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: RBY4I_2021
symbol: hisA
gene_biotype: protein_coding
description:
  Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; [E] COG0107 Imidazoleglycerol-phosphate synthase.


ensembl_gene_id: RBY4I_2029
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: RBY4I_2031
symbol: EDZ46814.1
gene_biotype: protein_coding
description:
  Putative hydrolase protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: RBY4I_2032
symbol: glyA_1
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: RBY4I_2037
symbol: EDZ46820.1
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.


ensembl_gene_id: RBY4I_2042
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: RBY4I_2044
symbol: argF
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: RBY4I_2046
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: RBY4I_2051
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: RBY4I_2053
symbol: EDZ46836.1
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein, family 3; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: RBY4I_206
symbol: RBY4I_206
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase family 7 member A1; [C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RBY4I_2061
symbol: EDZ46844.1
gene_biotype: protein_coding
description:
  Zinc finger/thioredoxin putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2063
symbol: EDZ46846.1
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase family protein; [R] COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; Belongs to the UPF0173 family.


ensembl_gene_id: RBY4I_2065
symbol: EDZ46848.1
gene_biotype: protein_coding
description:
  Ethyl tert-butyl ether degradation EthD; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2070
symbol: EDZ46853.1
gene_biotype: protein_coding
description:
  Amidinotransferase family protein; [S] COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain.


ensembl_gene_id: RBY4I_2072
symbol: EDZ46855.1
gene_biotype: protein_coding
description:
  Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.


ensembl_gene_id: RBY4I_2077
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: RBY4I_2079
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: RBY4I_208
symbol: RBY4I_208
gene_biotype: protein_coding
description:
  Putative allantoin catabolism protein; [R] COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization.


ensembl_gene_id: RBY4I_2081
symbol: EDZ46864.1
gene_biotype: protein_coding
description:
  Ferritin and Dps; [P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.


ensembl_gene_id: RBY4I_2084
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: RBY4I_2085
symbol: tolQ
gene_biotype: protein_coding
description:
  Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: RBY4I_209
symbol: RBY4I_209
gene_biotype: protein_coding
description:
  TonB, C-terminal domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2096
symbol: tpa
gene_biotype: protein_coding
description:
  [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RBY4I_2099
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: RBY4I_2103
symbol: EDZ46886.1
gene_biotype: protein_coding
description:
  Molybdopterin dehydrogenase, FAD-binding; [C] COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs.


ensembl_gene_id: RBY4I_2106
symbol: EDZ46889.1
gene_biotype: protein_coding
description:
  Peptidoglycan-binding domain 1; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.


ensembl_gene_id: RBY4I_211
symbol: RBY4I_211
gene_biotype: protein_coding
description:
  Virulence protein, SciE type; [R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion.


ensembl_gene_id: RBY4I_2110
symbol: hisS
gene_biotype: protein_coding
description:
  histidyl-tRNA synthetase; [E] COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis.


ensembl_gene_id: RBY4I_2111
symbol: EDZ46894.1
gene_biotype: protein_coding
description:
  Glycosyl transferase, WecB/TagA/CpsF family; [M] COG1922 Teichoic acid biosynthesis proteins; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: RBY4I_2113
symbol: EDZ46896.1
gene_biotype: protein_coding
description:
  Monooxygenase family protein; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.


ensembl_gene_id: RBY4I_2116
symbol: dnaE2
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit subfamily, putative; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: RBY4I_2119
symbol: EDZ46902.1
gene_biotype: protein_coding
description:
  High-affinity nickel-transporter; [R] COG2215 ABC-type uncharacterized transport system, permease component; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: RBY4I_2120
symbol: EDZ46903.1
gene_biotype: protein_coding
description:
  Thioesterase family protein; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_2130
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: RBY4I_2133
symbol: merA_1
gene_biotype: protein_coding
description:
  Mercuric reductase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: RBY4I_2138
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: RBY4I_2139
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: RBY4I_214
symbol: uraH
gene_biotype: protein_coding
description:
  Hydroxyisourate hydrolase; [R] COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.


ensembl_gene_id: RBY4I_2144
symbol: trmFO
gene_biotype: protein_coding
description:
  tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: RBY4I_2145
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: RBY4I_2152
symbol: EDZ46935.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate enzyme, central domain family; [E] COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.


ensembl_gene_id: RBY4I_2157
symbol: EDZ46940.1
gene_biotype: protein_coding
description:
  Type I secretion target repeat protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2161
symbol: EDZ46944.1
gene_biotype: protein_coding
description:
  Thioesterase family protein; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.


ensembl_gene_id: RBY4I_2163
symbol: EDZ46946.1
gene_biotype: protein_coding
description:
  Putative CheA Signal Transduction Histidine Kinase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2164
symbol: EDZ46947.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AlpA family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2166
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: RBY4I_2167
symbol: EDZ46950.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: RBY4I_2170
symbol: EDZ46953.1
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: RBY4I_2180
symbol: EDZ46962.1
gene_biotype: protein_coding
description:
  Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain, putative; [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.


ensembl_gene_id: RBY4I_2181
symbol: EDZ46963.1
gene_biotype: protein_coding
description:
  Aminotransferase, class III family; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RBY4I_2184
symbol: EDZ46966.1
gene_biotype: protein_coding
description:
  carnitinyl-CoA dehydratase; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RBY4I_2185
symbol: EDZ46967.1
gene_biotype: protein_coding
description:
  RecF/RecN/SMC N terminal domain protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.


ensembl_gene_id: RBY4I_2186
symbol: EDZ46968.1
gene_biotype: protein_coding
description:
  [C] COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: RBY4I_2194
symbol: rimK
gene_biotype: protein_coding
description:
  Ribosomal protein S6 modification protein; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; Belongs to the RimK family.


ensembl_gene_id: RBY4I_2195
symbol: EDZ46977.1
gene_biotype: protein_coding
description:
  Surface presentation of antigens protein; [NU] COG1886 Flagellar motor switch/type III secretory pathway protein.


ensembl_gene_id: RBY4I_2199
symbol: sitC
gene_biotype: protein_coding
description:
  ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC; [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.


ensembl_gene_id: RBY4I_2204
symbol: phnL
gene_biotype: protein_coding
description:
  Phosphonate C-P lyase system protein PhnL; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: RBY4I_2207
symbol: ate
gene_biotype: protein_coding
description:
  arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: RBY4I_2208
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: RBY4I_2209
symbol: EDZ46991.1
gene_biotype: protein_coding
description:
  Transmembrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: RBY4I_2210
symbol: msrA_2
gene_biotype: protein_coding
description:
  methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: RBY4I_2213
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: RBY4I_2215
symbol: EDZ46997.1
gene_biotype: protein_coding
description:
  Low molecular weight phosphotyrosine protein phosphatase; [T] COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: RBY4I_2217
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: RBY4I_222
symbol: RBY4I_222
gene_biotype: protein_coding
description:
  Type VI secretion protein, EvpB/VC_A0108 family; [S] COG3517 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_2224
symbol: EDZ47006.1
gene_biotype: protein_coding
description:
  Modification methylase SmeIP; [L] COG2189 Adenine specific DNA methylase Mod; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: RBY4I_2229
symbol: EDZ47011.1
gene_biotype: protein_coding
description:
  Esterase YbfF; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: RBY4I_223
symbol: guaD_2
gene_biotype: protein_coding
description:
  Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.


ensembl_gene_id: RBY4I_2233
symbol: EDZ47015.1
gene_biotype: protein_coding
description:
  PEP-utilizing enzyme, TIM barrel domain protein; [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase.


ensembl_gene_id: RBY4I_2241
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: RBY4I_2245
symbol: EDZ47027.1
gene_biotype: protein_coding
description:
  3-hydroxyacyl-CoA dehydrogenase, type II; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RBY4I_2248
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: RBY4I_2250
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: RBY4I_2251
symbol: EDZ47033.1
gene_biotype: protein_coding
description:
  Bordetella uptake gene product superfamily; [S] COG3181 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_2255
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: RBY4I_2258
symbol: EDZ47040.1
gene_biotype: protein_coding
description:
  Nodulation protein E; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: RBY4I_2259
symbol: phoU
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: RBY4I_2264
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: RBY4I_2268
symbol: EDZ47050.1
gene_biotype: protein_coding
description:
  Amidohydrolase family protein; [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: RBY4I_2269
symbol: EDZ47051.1
gene_biotype: protein_coding
description:
  BolA protein; [T] COG0271 Stress-induced morphogen (activity unknown); Belongs to the BolA/IbaG family.


ensembl_gene_id: RBY4I_227
symbol: RBY4I_227
gene_biotype: protein_coding
description:
  Type VI secretion system lysozyme-related protein; [S] COG3518 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_2270
symbol: EDZ47052.1
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein, family 5; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component.


ensembl_gene_id: RBY4I_2277
symbol: EDZ47059.1
gene_biotype: protein_coding
description:
  Trap dicarboxylate transporter, dctq subunit; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.


ensembl_gene_id: RBY4I_228
symbol: RBY4I_228
gene_biotype: protein_coding
description:
  Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.


ensembl_gene_id: RBY4I_2286
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: RBY4I_2289
symbol: lptD
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.


ensembl_gene_id: RBY4I_2290
symbol: pncB
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.


ensembl_gene_id: RBY4I_2291
symbol: metF_2
gene_biotype: protein_coding
description:
  [E] COG0685 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: RBY4I_2294
symbol: speB_2
gene_biotype: protein_coding
description:
  Agmatinase; [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; overlaps another CDS with the same product name; Belongs to the arginase family.


ensembl_gene_id: RBY4I_2296
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase subunit i; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: RBY4I_23
symbol: pxpA
gene_biotype: protein_coding
description:
  LamB/YcsF; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: RBY4I_2301
symbol: def_1
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. Belongs to the polypeptide deformylase family.


ensembl_gene_id: RBY4I_2302
symbol: mtnA
gene_biotype: protein_coding
description:
  Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: RBY4I_2306
symbol: yaeT
gene_biotype: protein_coding
description:
  Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: RBY4I_2307
symbol: EDZ47089.1
gene_biotype: protein_coding
description:
  Trap dicarboxylate transporter- dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.


ensembl_gene_id: RBY4I_2308
symbol: petA
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: RBY4I_2309
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase chain b; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: RBY4I_2314
symbol: secB
gene_biotype: protein_coding
description:
  Protein-export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: RBY4I_2316
symbol: ilvE_1
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RBY4I_2320
symbol: nthA
gene_biotype: protein_coding
description:
  Nitrile hydratase, alpha subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2321
symbol: ubiB
gene_biotype: protein_coding
description:
  2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.


ensembl_gene_id: RBY4I_2322
symbol: EDZ47104.1
gene_biotype: protein_coding
description:
  Pyrimidine-specific ribonucleoside hydrolase RihA; [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase.


ensembl_gene_id: RBY4I_2325
symbol: EDZ47107.1
gene_biotype: protein_coding
description:
  RND transporter, HAE1/HME family, permease protein; [V] COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: RBY4I_2330
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).


ensembl_gene_id: RBY4I_2331
symbol: purC
gene_biotype: protein_coding
description:
  [F] COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; Belongs to the SAICAR synthetase family.


ensembl_gene_id: RBY4I_2332
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: RBY4I_2336
symbol: EDZ47118.1
gene_biotype: protein_coding
description:
  Oxidoreductase, 2OG-Fe(II) oxygenase family; [R] COG3491 Isopenicillin N synthase and related dioxygenases.


ensembl_gene_id: RBY4I_2337
symbol: EDZ47119.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: RBY4I_2338
symbol: EDZ47120.1
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein paai; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.


ensembl_gene_id: RBY4I_2343
symbol: EDZ47125.1
gene_biotype: protein_coding
description:
  Oxidoreductase, FAD/FMN-binding family; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.


ensembl_gene_id: RBY4I_2345
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: RBY4I_2348
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: RBY4I_2350
symbol: rpsQ
gene_biotype: protein_coding
description:
  Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: RBY4I_2354
symbol: hemD
gene_biotype: protein_coding
description:
  uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: RBY4I_2355
symbol: ade
gene_biotype: protein_coding
description:
  Adenine deaminase; [Q] COG1228 Imidazolonepropionase and related amidohydrolases; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.


ensembl_gene_id: RBY4I_2357
symbol: EDZ47139.1
gene_biotype: protein_coding
description:
  Tat pathway signal sequence domain protein; [S] COG3108 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_2360
symbol: EDZ47142.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Heme NO binding, putative.


ensembl_gene_id: RBY4I_2365
symbol: EDZ47147.1
gene_biotype: protein_coding
description:
  Von Willebrand factor type A domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2366
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH dehydrogenase i, a subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: RBY4I_2368
symbol: EDZ47150.1
gene_biotype: protein_coding
description:
  Lipoprotein releasing system, transmembrane protein, LolC/E family; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: RBY4I_237
symbol: nuoE
gene_biotype: protein_coding
description:
  NADH dehydrogenase-ubiquinone oxidoreductase, chain e; [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.


ensembl_gene_id: RBY4I_2371
symbol: EDZ47153.1
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: RBY4I_2377
symbol: EDZ47159.1
gene_biotype: protein_coding
description:
  Peptidoglycan-binding LysM; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: RBY4I_2378
symbol: EDZ47160.1
gene_biotype: protein_coding
description:
  Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2380
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: RBY4I_2381
symbol: pyrB
gene_biotype: protein_coding
description:
  [E] COG0078 Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: RBY4I_2386
symbol: idnO
gene_biotype: protein_coding
description:
  Gluconate 5-dehydrogenase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: RBY4I_2387
symbol: EDZ47169.1
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: RBY4I_2388
symbol: EDZ47170.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [E] COG2981 Uncharacterized protein involved in cysteine biosynthesis.


ensembl_gene_id: RBY4I_2390
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: RBY4I_2391
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: RBY4I_2394
symbol: kynA
gene_biotype: protein_coding
description:
  Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.


ensembl_gene_id: RBY4I_2396
symbol: kpsT
gene_biotype: protein_coding
description:
  Capsular polysaccharide export ATP-binding protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: RBY4I_2397
symbol: EDZ47179.1
gene_biotype: protein_coding
description:
  [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.


ensembl_gene_id: RBY4I_240
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.


ensembl_gene_id: RBY4I_2400
symbol: glpX
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase, class II; [G] COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins.


ensembl_gene_id: RBY4I_2403
symbol: edd
gene_biotype: protein_coding
description:
  Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.


ensembl_gene_id: RBY4I_2405
symbol: nnrE
gene_biotype: protein_coding
description:
  YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]


ensembl_gene_id: RBY4I_2407
symbol: EDZ47189.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family with cupin sensor; [K] COG1396 Predicted transcriptional regulators.


ensembl_gene_id: RBY4I_2409
symbol: EDZ47191.1
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase, zinc-binding domain protein; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: RBY4I_2411
symbol: minE
gene_biotype: protein_coding
description:
  Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.


ensembl_gene_id: RBY4I_2412
symbol: EDZ47194.1
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IIA; [G] COG0647 Predicted sugar phosphatases of the HAD superfamily.


ensembl_gene_id: RBY4I_2417
symbol: EDZ47199.1
gene_biotype: protein_coding
description:
  Uncharacterized protein family UPF0033; [O] COG0425 Predicted redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: RBY4I_2418
symbol: phnC_1
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.


ensembl_gene_id: RBY4I_2419
symbol: EDZ47201.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00044; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: RBY4I_2420
symbol: EDZ47202.1
gene_biotype: protein_coding
description:
  Decarboxylase family protein; [R] COG1611 Predicted Rossmann fold nucleotide-binding protein; Belongs to the LOG family.


ensembl_gene_id: RBY4I_2421
symbol: EDZ47203.1
gene_biotype: protein_coding
description:
  Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: RBY4I_2425
symbol: EDZ47207.1
gene_biotype: protein_coding
description:
  Nudix domain protein; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: RBY4I_2428
symbol: EDZ47210.1
gene_biotype: protein_coding
description:
  GlcG protein; [R] COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol.


ensembl_gene_id: RBY4I_2431
symbol: phnE_3
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, permease protein PhnE; [P] COG2011 ABC-type metal ion transport system, permease component.


ensembl_gene_id: RBY4I_2432
symbol: EDZ47214.1
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: RBY4I_2438
symbol: ccmD
gene_biotype: protein_coding
description:
  Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.


ensembl_gene_id: RBY4I_244
symbol: RBY4I_244
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: RBY4I_2442
symbol: coaBC
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: RBY4I_2443
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: RBY4I_2448
symbol: trbL
gene_biotype: protein_coding
description:
  P-type conjugative transfer protein TrbL; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2450
symbol: EDZ47232.1
gene_biotype: protein_coding
description:
  ATPase; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.


ensembl_gene_id: RBY4I_2451
symbol: glnE
gene_biotype: protein_coding
description:
  Glutamate-ammonia ligase adenylyltransferase family; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal [...]


ensembl_gene_id: RBY4I_2457
symbol: phnE_2
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, permease protein PhnE; [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component.


ensembl_gene_id: RBY4I_2458
symbol: EDZ47240.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: RBY4I_2459
symbol: EDZ47241.1
gene_biotype: protein_coding
description:
  HIT family protein; [FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.


ensembl_gene_id: RBY4I_2465
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: RBY4I_2467
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: RBY4I_2469
symbol: hisI_2
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: RBY4I_2471
symbol: EDZ47253.1
gene_biotype: protein_coding
description:
  Fatty acid desaturase family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2477
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: RBY4I_248
symbol: RBY4I_248
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RBY4I_2480
symbol: EDZ47262.1
gene_biotype: protein_coding
description:
  ArsC family protein; [P] COG1393 Arsenate reductase and related proteins, glutaredoxin family; Belongs to the ArsC family.


ensembl_gene_id: RBY4I_2484
symbol: EDZ47266.1
gene_biotype: protein_coding
description:
  8-amino-7-oxononanoate synthase; [H] COG0156 7-keto-8-aminopelargonate synthetase and related enzymes.


ensembl_gene_id: RBY4I_2485
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: RBY4I_2488
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: RBY4I_2489
symbol: EDZ47271.1
gene_biotype: protein_coding
description:
  Transposition protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_249
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: RBY4I_2493
symbol: EDZ47275.1
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; [M] COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.


ensembl_gene_id: RBY4I_2494
symbol: paaK
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation oxidoreductase PaaK; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.


ensembl_gene_id: RBY4I_2495
symbol: EDZ47277.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.


ensembl_gene_id: RBY4I_250
symbol: RBY4I_250
gene_biotype: protein_coding
description:
  phytanoyl-CoA dioxygenase family protein; [Q] COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin.


ensembl_gene_id: RBY4I_2505
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: RBY4I_2507
symbol: EDZ47289.1
gene_biotype: protein_coding
description:
  Lipoprotein-releasing system ATP-binding protein LolD 2; [P] COG1135 ABC-type metal ion transport system, ATPase component.


ensembl_gene_id: RBY4I_2509
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: RBY4I_251
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: RBY4I_2510
symbol: cdsA
gene_biotype: protein_coding
description:
  Phosphatidate cytidylyltransferase; [I] COG0575 CDP-diglyceride synthetase; Belongs to the CDS family.


ensembl_gene_id: RBY4I_2512
symbol: gltX_2
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: RBY4I_2516
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: RBY4I_2518
symbol: EDZ47300.1
gene_biotype: protein_coding
description:
  Peroxisomal NADH pyrophosphatase nudt12; [F] COG1051 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.


ensembl_gene_id: RBY4I_2519
symbol: EDZ47301.1
gene_biotype: protein_coding
description:
  [T] COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation.


ensembl_gene_id: RBY4I_2523
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: RBY4I_2527
symbol: fabA
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.


ensembl_gene_id: RBY4I_2528
symbol: EDZ47310.1
gene_biotype: protein_coding
description:
  Hydrolase, nudix family; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.


ensembl_gene_id: RBY4I_2529
symbol: EDZ47311.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, cbb3-type, CcoQ subunit, putative; [O] COG4736 Cbb3-type cytochrome oxidase, subunit 3.


ensembl_gene_id: RBY4I_2533
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: RBY4I_2538
symbol: EDZ47320.1
gene_biotype: protein_coding
description:
  Hydroxydechloroatrazine ethylaminohydrolase; [Q] COG1228 Imidazolonepropionase and related amidohydrolases.


ensembl_gene_id: RBY4I_2543
symbol: EDZ47325.1
gene_biotype: protein_coding
description:
  [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.


ensembl_gene_id: RBY4I_2546
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: RBY4I_2547
symbol: EDZ47329.1
gene_biotype: protein_coding
description:
  Rhomboid family protein; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).


ensembl_gene_id: RBY4I_2552
symbol: ogt
gene_biotype: protein_coding
description:
  methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: RBY4I_2554
symbol: pepA_1
gene_biotype: protein_coding
description:
  Leucine aminopeptidase protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: RBY4I_2556
symbol: EDZ47338.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [P] COG0155 Sulfite reductase, beta subunit (hemoprotein); tetratricopeptide TPR_2.


ensembl_gene_id: RBY4I_256
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: RBY4I_2560
symbol: EDZ47342.1
gene_biotype: protein_coding
description:
  ABC transporter, transmembrane ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: RBY4I_2561
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: RBY4I_2564
symbol: acpD
gene_biotype: protein_coding
description:
  Acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: RBY4I_2566
symbol: aldA
gene_biotype: protein_coding
description:
  Acetaldehyde dehydrogenase II; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RBY4I_2571
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: RBY4I_2577
symbol: EDZ47359.1
gene_biotype: protein_coding
description:
  Luciferase-like monooxygenase family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.


ensembl_gene_id: RBY4I_2578
symbol: EDZ47360.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: RBY4I_2579
symbol: hutF
gene_biotype: protein_coding
description:
  Formiminoglutamate deiminase; [FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases.


ensembl_gene_id: RBY4I_2581
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: RBY4I_2582
symbol: EDZ47364.1
gene_biotype: protein_coding
description:
  Monooxygenase, FAD-binding; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.


ensembl_gene_id: RBY4I_2588
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: RBY4I_2593
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: RBY4I_2596
symbol: EDZ47378.1
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.


ensembl_gene_id: RBY4I_2597
symbol: rlmH
gene_biotype: protein_coding
description:
  Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: RBY4I_2607
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: RBY4I_2610
symbol: EDZ47392.1
gene_biotype: protein_coding
description:
  Heat shock protein Hsp20; [O] COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: RBY4I_2617
symbol: gcvP_1
gene_biotype: protein_coding
description:
  Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: RBY4I_2618
symbol: dnaB
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: RBY4I_2620
symbol: EDZ47402.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family).


ensembl_gene_id: RBY4I_2621
symbol: EDZ47403.1
gene_biotype: protein_coding
description:
  HAD-superfamily subfamily IIA hydrolase, TIGR01459; [G] COG0647 Predicted sugar phosphatases of the HAD superfamily.


ensembl_gene_id: RBY4I_2622
symbol: EDZ47404.1
gene_biotype: protein_coding
description:
  GCN5-related N-acetyltransferase; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.


ensembl_gene_id: RBY4I_263
symbol: RBY4I_263
gene_biotype: protein_coding
description:
  Peptidase M22, glycoprotease; [O] COG0533 Metal-dependent proteases with possible chaperone activity.


ensembl_gene_id: RBY4I_2633
symbol: EDZ47415.1
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin, iron-sulfur binding; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: RBY4I_2636
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: RBY4I_264
symbol: RBY4I_264
gene_biotype: protein_coding
description:
  methylcrotonoyl-CoA carboxylase beta chain; [I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).


ensembl_gene_id: RBY4I_2642
symbol: EDZ47424.1
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase A; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: RBY4I_2644
symbol: EDZ47426.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: RBY4I_2645
symbol: serA
gene_biotype: protein_coding
description:
  [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: RBY4I_2646
symbol: EDZ47428.1
gene_biotype: protein_coding
description:
  Cation transporter; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.


ensembl_gene_id: RBY4I_265
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: RBY4I_2652
symbol: EDZ47434.1
gene_biotype: protein_coding
description:
  Sarcosine oxidase, beta subunit family; [M] COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains.


ensembl_gene_id: RBY4I_2660
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: RBY4I_2661
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: RBY4I_2662
symbol: pcaD
gene_biotype: protein_coding
description:
  3-oxoadipate enol-lactonase; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: RBY4I_2663
symbol: EDZ47445.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins).


ensembl_gene_id: RBY4I_2664
symbol: trkA
gene_biotype: protein_coding
description:
  Trk system potassium uptake protein TrkA; [P] COG1055 Na+/H+ antiporter NhaD and related arsenite permeases.


ensembl_gene_id: RBY4I_2665
symbol: EDZ47447.1
gene_biotype: protein_coding
description:
  Hybrid peroxiredoxin hyPrx5; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.


ensembl_gene_id: RBY4I_2673
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: RBY4I_2675
symbol: EDZ47457.1
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).


ensembl_gene_id: RBY4I_2676
symbol: EDZ47458.1
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: RBY4I_2680
symbol: EDZ47462.1
gene_biotype: protein_coding
description:
  Crp-Fnr family transciptional regulator; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: RBY4I_2683
symbol: EDZ47465.1
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein, family 1; [P] COG1840 ABC-type Fe3+ transport system, periplasmic component.


ensembl_gene_id: RBY4I_2685
symbol: EDZ47467.1
gene_biotype: protein_coding
description:
  Cytochrome B/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: RBY4I_2687
symbol: pqqE
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).


ensembl_gene_id: RBY4I_269
symbol: RBY4I_269
gene_biotype: protein_coding
description:
  2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit domain protein; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.


ensembl_gene_id: RBY4I_2691
symbol: EDZ47473.1
gene_biotype: protein_coding
description:
  [O] COG0695 Glutaredoxin and related proteins; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: RBY4I_2694
symbol: EDZ47476.1
gene_biotype: protein_coding
description:
  N-carbamoyl-L-amino acid hydrolase; [R] COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.


ensembl_gene_id: RBY4I_2700
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: RBY4I_2702
symbol: pcaF
gene_biotype: protein_coding
description:
  Beta-ketoadipyl CoA thiolase; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RBY4I_2705
symbol: rlmJ
gene_biotype: protein_coding
description:
  Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA.


ensembl_gene_id: RBY4I_2706
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: RBY4I_271
symbol: RBY4I_271
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [V] COG4171 ABC-type antimicrobial peptide transport system, permease component; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_2714
symbol: EDZ47496.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase family protein; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: RBY4I_2715
symbol: EDZ47497.1
gene_biotype: protein_coding
description:
  PepSY-associated TM helix domain protein; [S] COG3182 Uncharacterized iron-regulated membrane protein.


ensembl_gene_id: RBY4I_2716
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: RBY4I_2717
symbol: EDZ47499.1
gene_biotype: protein_coding
description:
  L-carnitine dehydratase/bile acid-inducible protein F; [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.


ensembl_gene_id: RBY4I_272
symbol: RBY4I_272
gene_biotype: protein_coding
description:
  [S] COG3022 Uncharacterized protein conserved in bacteria; protein RD1_0358; Belongs to the UPF0246 family.


ensembl_gene_id: RBY4I_2720
symbol: thiQ
gene_biotype: protein_coding
description:
  Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.


ensembl_gene_id: RBY4I_2724
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: RBY4I_2725
symbol: EDZ47507.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluD; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: RBY4I_2726
symbol: EDZ47508.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, permease protein; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.


ensembl_gene_id: RBY4I_2727
symbol: EDZ47509.1
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase; [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.


ensembl_gene_id: RBY4I_2729
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: RBY4I_273
symbol: RBY4I_273
gene_biotype: protein_coding
description:
  Glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: RBY4I_2731
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase chain c; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: RBY4I_2734
symbol: EDZ47516.1
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate galactose phosphotransferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.


ensembl_gene_id: RBY4I_2736
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: RBY4I_2737
symbol: EDZ47519.1
gene_biotype: protein_coding
description:
  Aminotransferase, class I and II; [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.


ensembl_gene_id: RBY4I_2741
symbol: ppaC
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase, manganese-dependent; [C] COG1227 Inorganic pyrophosphatase/exopolyphosphatase.


ensembl_gene_id: RBY4I_2742
symbol: phaG
gene_biotype: protein_coding
description:
  pH adaption potassium efflux system protein PhaG; [P] COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit.


ensembl_gene_id: RBY4I_2743
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: RBY4I_2746
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: RBY4I_275
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: RBY4I_2751
symbol: phaE
gene_biotype: protein_coding
description:
  pH adaption potassium efflux system protein PhaE; [P] COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit.


ensembl_gene_id: RBY4I_2752
symbol: bluB
gene_biotype: protein_coding
description:
  cob(II)yrinic acid a,c-diamide reductase; [M] COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis.


ensembl_gene_id: RBY4I_2754
symbol: gcvH_2
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: RBY4I_2755
symbol: EDZ47537.1
gene_biotype: protein_coding
description:
  Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.


ensembl_gene_id: RBY4I_2756
symbol: phnE_1
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, permease protein PhnE; [E] COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: RBY4I_2757
symbol: EDZ47539.1
gene_biotype: protein_coding
description:
  polyA polymerase family protein; [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: RBY4I_2764
symbol: EDZ47546.1
gene_biotype: protein_coding
description:
  NOL1/NOP2/sun family protein; [J] COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: RBY4I_2769
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: RBY4I_2775
symbol: rnd
gene_biotype: protein_coding
description:
  Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.


ensembl_gene_id: RBY4I_2778
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: RBY4I_278
symbol: RBY4I_278
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [E] COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: RBY4I_2781
symbol: EDZ47563.1
gene_biotype: protein_coding
description:
  Tripartite ATP-independent periplasmic transporter, DctQ component; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.


ensembl_gene_id: RBY4I_2790
symbol: xerC
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: RBY4I_2798
symbol: ttcA
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.


ensembl_gene_id: RBY4I_2799
symbol: EDZ47581.1
gene_biotype: protein_coding
description:
  ABC transporter, nucleotide binding/ATPase protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_28
symbol: RBY4I_28
gene_biotype: protein_coding
description:
  Trap dicarboxylate transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.


ensembl_gene_id: RBY4I_2800
symbol: rppH
gene_biotype: protein_coding
description:
  (Di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: RBY4I_2802
symbol: engA
gene_biotype: protein_coding
description:
  GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: RBY4I_2808
symbol: bfr
gene_biotype: protein_coding
description:
  Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: RBY4I_2809
symbol: hpt
gene_biotype: protein_coding
description:
  Hypoxanthine phosphoribosyltransferase; [F] COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: RBY4I_281
symbol: groL_2
gene_biotype: protein_coding
description:
  Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: RBY4I_2814
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: RBY4I_2815
symbol: EDZ47597.1
gene_biotype: protein_coding
description:
  Peptide/nickel/opine uptake family ABC transporter, permease protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: RBY4I_282
symbol: fabF
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: RBY4I_2821
symbol: EDZ47603.1
gene_biotype: protein_coding
description:
  Drug resistance transporter Bcr/CflA subfamily; [GEPR] COG0477 Permeases of the major facilitator superfamily.


ensembl_gene_id: RBY4I_2822
symbol: nirK
gene_biotype: protein_coding
description:
  Nitrite reductase, copper-containing; [Q] COG2132 Putative multicopper oxidases; Belongs to the multicopper oxidase family.


ensembl_gene_id: RBY4I_2823
symbol: ubiE-2
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis methyltransferase COQ5; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: RBY4I_2826
symbol: folD
gene_biotype: protein_coding
description:
  Bifunctional protein FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: RBY4I_2827
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: RBY4I_283
symbol: RBY4I_283
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding/permease protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: RBY4I_2830
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I superfamily; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: RBY4I_2831
symbol: EDZ47613.1
gene_biotype: protein_coding
description:
  Flavin-containing monooxygenase FMO; [ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.


ensembl_gene_id: RBY4I_2835
symbol: EDZ47617.1
gene_biotype: protein_coding
description:
  Transcriptional regulator/arsenate reductase; [K] COG0640 Predicted transcriptional regulators; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: RBY4I_2836
symbol: aldH
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RBY4I_2847
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: RBY4I_2849
symbol: xerC-2
gene_biotype: protein_coding
description:
  Phage integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: RBY4I_285
symbol: cse4
gene_biotype: protein_coding
description:
  CRISPR-associated protein, Cse4 family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_2850
symbol: ccmB
gene_biotype: protein_coding
description:
  Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.


ensembl_gene_id: RBY4I_2853
symbol: acsA_2
gene_biotype: protein_coding
description:
  acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: RBY4I_2857
symbol: EDZ47639.1
gene_biotype: protein_coding
description:
  Haloacetate dehalogenase H-1; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).


ensembl_gene_id: RBY4I_2858
symbol: EDZ47640.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.


ensembl_gene_id: RBY4I_2859
symbol: EDZ47641.1
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase 2B4; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RBY4I_2860
symbol: lnt_2
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation.


ensembl_gene_id: RBY4I_2862
symbol: EDZ47644.1
gene_biotype: protein_coding
description:
  Trap transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.


ensembl_gene_id: RBY4I_2864
symbol: EDZ47646.1
gene_biotype: protein_coding
description:
  Aromatic amino acid beta-eliminating lyase/threonine aldolase; [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.


ensembl_gene_id: RBY4I_2865
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: RBY4I_2867
symbol: prsA
gene_biotype: protein_coding
description:
  Phosphoribosyl pyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: RBY4I_2873
symbol: EDZ47655.1
gene_biotype: protein_coding
description:
  Homocysteine S-methyltransferase family protein; [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.


ensembl_gene_id: RBY4I_2875
symbol: dinP
gene_biotype: protein_coding
description:
  DNA damage inducible P protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: RBY4I_2883
symbol: EDZ47665.1
gene_biotype: protein_coding
description:
  Rhodanese domain protein; [P] COG0607 Rhodanese-related sulfurtransferase; Belongs to the UPF0176 family.


ensembl_gene_id: RBY4I_2884
symbol: frk
gene_biotype: protein_coding
description:
  Fructokinase; [G] COG0524 Sugar kinases, ribokinase family; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: RBY4I_2885
symbol: EDZ47667.1
gene_biotype: protein_coding
description:
  Peroxisomal bifunctional enzyme; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RBY4I_2889
symbol: hisC
gene_biotype: protein_coding
description:
  [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: RBY4I_2890
symbol: EDZ47671.1
gene_biotype: protein_coding
description:
  Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.


ensembl_gene_id: RBY4I_2892
symbol: EDZ47673.1
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: RBY4I_2898
symbol: EDZ47679.1
gene_biotype: protein_coding
description:
  Sarcosine oxidase, alpha subunit family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.


ensembl_gene_id: RBY4I_2900
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: RBY4I_2901
symbol: EDZ47682.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_2903
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: RBY4I_2910
symbol: cobB
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: RBY4I_2911
symbol: EDZ47692.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family protein; [L] COG0582 Integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: RBY4I_2916
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, small subunit; [F] COG0518 GMP synthase - Glutamine amidotransferase domain; Belongs to the CarA family.


ensembl_gene_id: RBY4I_292
symbol: RBY4I_292
gene_biotype: protein_coding
description:
  Sodium/solute symporter family protein; [ER] COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: RBY4I_2921
symbol: tadA
gene_biotype: protein_coding
description:
  Cytosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: RBY4I_2923
symbol: cobN
gene_biotype: protein_coding
description:
  Cobaltochelatase, CobN subunit; [H] COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.


ensembl_gene_id: RBY4I_2927
symbol: EDZ47708.1
gene_biotype: protein_coding
description:
  Nitrogen-fixing NifU domain protein; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.


ensembl_gene_id: RBY4I_2928
symbol: EDZ47709.1
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: RBY4I_2929
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: RBY4I_2932
symbol: EDZ47713.1
gene_biotype: protein_coding
description:
  Purine catabolism protein PucB; [H] COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A.


ensembl_gene_id: RBY4I_2935
symbol: cobT_1
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: RBY4I_294
symbol: fahA
gene_biotype: protein_coding
description:
  Fumarylacetoacetase; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).


ensembl_gene_id: RBY4I_2940
symbol: EDZ47721.1
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: RBY4I_2941
symbol: sitA
gene_biotype: protein_coding
description:
  ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA; [P] COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: RBY4I_2942
symbol: ctaD_2
gene_biotype: protein_coding
description:
  [P] COG3256 Nitric oxide reductase large subunit; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: RBY4I_2943
symbol: paaD
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein PaaD; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.


ensembl_gene_id: RBY4I_2951
symbol: EDZ47732.1
gene_biotype: protein_coding
description:
  RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: RBY4I_2953
symbol: EDZ47734.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate enzyme, central domain family; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.


ensembl_gene_id: RBY4I_2956
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: RBY4I_2960
symbol: iorA
gene_biotype: protein_coding
description:
  Isoquinoline 1-oxidoreductase, alpha subunit; [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.


ensembl_gene_id: RBY4I_2961
symbol: EDZ47742.1
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; [NT] COG0840 Methyl-accepting chemotaxis protein.


ensembl_gene_id: RBY4I_2962
symbol: EDZ47743.1
gene_biotype: protein_coding
description:
  Glycine cleavage T-protein (aminomethyl transferase); [S] COG3665 Uncharacterized conserved protein; Belongs to the GcvT family.


ensembl_gene_id: RBY4I_2968
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: RBY4I_2969
symbol: EDZ47750.1
gene_biotype: protein_coding
description:
  Fmu; [J] COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: RBY4I_297
symbol: pcaC
gene_biotype: protein_coding
description:
  4-carboxymuconolactone decarboxylase; [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.


ensembl_gene_id: RBY4I_2970
symbol: msrQ
gene_biotype: protein_coding
description:
  Ferric reductase domain protein transmembrane component, N-terminal domain; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduct [...]


ensembl_gene_id: RBY4I_2971
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: RBY4I_2973
symbol: EDZ47754.1
gene_biotype: protein_coding
description:
  methylated-DNA--protein-cysteine methyltransferase; [K] COG2207 AraC-type DNA-binding domain-containing proteins.


ensembl_gene_id: RBY4I_2976
symbol: EDZ47757.1
gene_biotype: protein_coding
description:
  Lipoprotein-releasing system ATP-binding protein LolD; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.


ensembl_gene_id: RBY4I_2978
symbol: nuoJ
gene_biotype: protein_coding
description:
  NADH dehydrogenase i, j subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: RBY4I_2979
symbol: EDZ47760.1
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: RBY4I_2980
symbol: flgF
gene_biotype: protein_coding
description:
  [N] COG4787 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RBY4I_2982
symbol: EDZ47763.1
gene_biotype: protein_coding
description:
  enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: RBY4I_2985
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: RBY4I_2987
symbol: EDZ47768.1
gene_biotype: protein_coding
description:
  Tungstate ABC transporter, permease protein; [P] COG0573 ABC-type phosphate transport system, permease component.


ensembl_gene_id: RBY4I_2988
symbol: EDZ47769.1
gene_biotype: protein_coding
description:
  4-carboxymuconolactone decarboxylase domain/ alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: RBY4I_2989
symbol: EDZ47770.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; overlaps another CDS with the same product name; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RBY4I_299
symbol: RBY4I_299
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase, zinc-containing; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.


ensembl_gene_id: RBY4I_2991
symbol: EDZ47772.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: RBY4I_2992
symbol: tatB
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: RBY4I_2997
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: RBY4I_2998
symbol: EDZ47779.1
gene_biotype: protein_coding
description:
  Cupin family protein; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.


ensembl_gene_id: RBY4I_2999
symbol: lipA_2
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: RBY4I_300
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: RBY4I_3009
symbol: scpA
gene_biotype: protein_coding
description:
  Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: RBY4I_3012
symbol: EDZ47793.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp-Fnr family; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: RBY4I_3015
symbol: EDZ47796.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR03084; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_3016
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: RBY4I_3018
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: RBY4I_3019
symbol: sucA
gene_biotype: protein_coding
description:
  [C] COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.


ensembl_gene_id: RBY4I_302
symbol: RBY4I_302
gene_biotype: protein_coding
description:
  [Q] COG2977 Phosphopantetheinyl transferase component of siderophore synthetase; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: RBY4I_3020
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: RBY4I_3029
symbol: EDZ47809.1
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [R] COG4239 ABC-type uncharacterized transport system, permease component.


ensembl_gene_id: RBY4I_303
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: RBY4I_3030
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: RBY4I_3038
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: RBY4I_3040
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: RBY4I_3044
symbol: EDZ47824.1
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide transporter domain family protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_3048
symbol: EDZ47828.1
gene_biotype: protein_coding
description:
  Class II aldolase/adducin N-terminal domain protein; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.


ensembl_gene_id: RBY4I_3050
symbol: pnp
gene_biotype: protein_coding
description:
  3' exoribonuclease family, domain 2; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: RBY4I_3051
symbol: EDZ47831.1
gene_biotype: protein_coding
description:
  Bacterial type II/III secretion system protein; [NU] COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.


ensembl_gene_id: RBY4I_3055
symbol: EDZ47835.1
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_3057
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: RBY4I_3060
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: RBY4I_3064
symbol: pepT
gene_biotype: protein_coding
description:
  Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: RBY4I_3069
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: RBY4I_3070
symbol: EDZ47850.1
gene_biotype: protein_coding
description:
  Acetyl-/propionyl-coenzyme A carboxylase alpha chain; [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ).


ensembl_gene_id: RBY4I_3074
symbol: fliL
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: RBY4I_3078
symbol: EDZ47858.1
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [S] COG1376 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_3079
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: RBY4I_3080
symbol: rbsK
gene_biotype: protein_coding
description:
  PfkB; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: RBY4I_3081
symbol: EDZ47861.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [S] COG0393 Uncharacterized conserved protein; protein rhos4_20440; Belongs to the UPF0145 family.


ensembl_gene_id: RBY4I_3082
symbol: deoB
gene_biotype: protein_coding
description:
  Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.


ensembl_gene_id: RBY4I_3087
symbol: EDZ47867.1
gene_biotype: protein_coding
description:
  Insulin-cleaving metalloproteinase outer membrane protein; [P] COG3487 Uncharacterized iron-regulated protein.


ensembl_gene_id: RBY4I_3089
symbol: fliF
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: RBY4I_31
symbol: RBY4I_31
gene_biotype: protein_coding
description:
  CsbD-like superfamily; [S] COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: RBY4I_310
symbol: RBY4I_310
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_3102
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: RBY4I_3105
symbol: recJ
gene_biotype: protein_coding
description:
  single-stranded-DNA-specific exonuclease RecJ; [L] COG0608 Single-stranded DNA-specific exonuclease.


ensembl_gene_id: RBY4I_3107
symbol: EDZ47887.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; [KG] COG1349 Transcriptional regulators of sugar metabolism.


ensembl_gene_id: RBY4I_3108
symbol: EDZ47888.1
gene_biotype: protein_coding
description:
  N-carbamoyl-L-amino acid amidohydrolase; [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: RBY4I_3109
symbol: betA
gene_biotype: protein_coding
description:
  Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.


ensembl_gene_id: RBY4I_3110
symbol: EDZ47890.1
gene_biotype: protein_coding
description:
  Competence/damage-inducible protein CinA domain protein; [R] COG1546 Uncharacterized protein (competence- and mitomycin-induced); Belongs to the CinA family.


ensembl_gene_id: RBY4I_3114
symbol: phnY
gene_biotype: protein_coding
description:
  Putative phosphonoacetaldehyde dehydrogenase; [C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RBY4I_3115
symbol: sucD_1
gene_biotype: protein_coding
description:
  succinyl-CoA synthase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: RBY4I_3117
symbol: metY
gene_biotype: protein_coding
description:
  O-acetylhomoserine sulfhydrylase; [E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.


ensembl_gene_id: RBY4I_3118
symbol: EDZ47898.1
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [S] COG4102 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_3119
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: RBY4I_312
symbol: trxB
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: RBY4I_3120
symbol: EDZ47900.1
gene_biotype: protein_coding
description:
  NAD(P)H dehydrogenase, quinone family; [R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B).


ensembl_gene_id: RBY4I_3121
symbol: EDZ47901.1
gene_biotype: protein_coding
description:
  GCN5-related N-acetyltransferase; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: RBY4I_3122
symbol: EDZ47902.1
gene_biotype: protein_coding
description:
  Chromosome replication initiation inhibitor protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: RBY4I_3124
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: RBY4I_3125
symbol: moaA_1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: RBY4I_3128
symbol: EDZ47908.1
gene_biotype: protein_coding
description:
  Phospholipase D active site domain protein; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.


ensembl_gene_id: RBY4I_3129
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: RBY4I_3135
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, large subunit; [I] COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit; Belongs to the CarB family.


ensembl_gene_id: RBY4I_3139
symbol: yejA
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide uptake family ABC transporter, periplasmic substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: RBY4I_314
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: RBY4I_3144
symbol: hemN
gene_biotype: protein_coding
description:
  [H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: RBY4I_315
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: RBY4I_3150
symbol: EDZ47930.1
gene_biotype: protein_coding
description:
  Protein secretion ABC efflux system, permease and ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: RBY4I_3152
symbol: kdsA
gene_biotype: protein_coding
description:
  [E] COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; Belongs to the KdsA family.


ensembl_gene_id: RBY4I_3160
symbol: EDZ47940.1
gene_biotype: protein_coding
description:
  Aminomethyltransferase; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.


ensembl_gene_id: RBY4I_3165
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: RBY4I_3166
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: RBY4I_3167
symbol: EDZ47947.1
gene_biotype: protein_coding
description:
  Major intrinsic protein; [G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: RBY4I_3169
symbol: EDZ47949.1
gene_biotype: protein_coding
description:
  alpha-methylacyl-CoA racemase; [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.


ensembl_gene_id: RBY4I_3170
symbol: pqqB
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.


ensembl_gene_id: RBY4I_3174
symbol: EDZ47954.1
gene_biotype: protein_coding
description:
  [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: RBY4I_318
symbol: RBY4I_318
gene_biotype: protein_coding
description:
  Glycosyl transferase, group 2 family protein; [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.


ensembl_gene_id: RBY4I_3180
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: RBY4I_3187
symbol: EDZ47967.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP-binding protein; [K] COG0583 Transcriptional regulator.


ensembl_gene_id: RBY4I_3191
symbol: EDZ47971.1
gene_biotype: protein_coding
description:
  LAO/AO transport system ATPase; [E] COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family.


ensembl_gene_id: RBY4I_3194
symbol: EDZ47974.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: RBY4I_3197
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: RBY4I_3199
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: RBY4I_320
symbol: RBY4I_320
gene_biotype: protein_coding
description:
  Phosphonate metabolim protein, transferase hexapeptide repeat family; [R] COG0110 Acetyltransferase (isoleucine patch superfamily).


ensembl_gene_id: RBY4I_3202
symbol: EDZ47982.1
gene_biotype: protein_coding
description:
  Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: RBY4I_3205
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: RBY4I_3206
symbol: ribA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.  In the N-terminal section; belongs to the DHBP synthase family.


ensembl_gene_id: RBY4I_3207
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: RBY4I_3209
symbol: EDZ47989.1
gene_biotype: protein_coding
description:
  ATP:cob(I)alamin adenosyltransferase; [S] COG2096 Uncharacterized conserved protein; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: RBY4I_321
symbol: aat
gene_biotype: protein_coding
description:
  leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: RBY4I_3212
symbol: pcs
gene_biotype: protein_coding
description:
  Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: RBY4I_3215
symbol: ccmE
gene_biotype: protein_coding
description:
  CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: RBY4I_3216
symbol: EDZ47996.1
gene_biotype: protein_coding
description:
  Class II glutamine amidotransferase, putative; [E] COG0367 Asparagine synthase (glutamine-hydrolyzing).


ensembl_gene_id: RBY4I_3217
symbol: EDZ47997.1
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_3218
symbol: EDZ47998.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MocR family; [E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.


ensembl_gene_id: RBY4I_322
symbol: potI
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, permease protein; [P] COG1178 ABC-type Fe3+ transport system, permease component.


ensembl_gene_id: RBY4I_3224
symbol: EDZ48004.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgC; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: RBY4I_3227
symbol: hpaD
gene_biotype: protein_coding
description:
  3,4-dihydroxyphenylacetate 2,3-dioxygenase; [E] COG0346 Lactoylglutathione lyase and related lyases.


ensembl_gene_id: RBY4I_3228
symbol: EDZ48008.1
gene_biotype: protein_coding
description:
  Trap transporter, dctm subunit; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.


ensembl_gene_id: RBY4I_323
symbol: RBY4I_323
gene_biotype: protein_coding
description:
  Glycosyltransferase family 28 C-terminal domain; [M] COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase.


ensembl_gene_id: RBY4I_3230
symbol: EDZ48010.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG1733 Predicted transcriptional regulators; helix-turn-helix, HxlR type.


ensembl_gene_id: RBY4I_3231
symbol: surE
gene_biotype: protein_coding
description:
  5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: RBY4I_3236
symbol: EDZ48016.1
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; [KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism.


ensembl_gene_id: RBY4I_3239
symbol: EDZ48019.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: RBY4I_3247
symbol: EDZ48027.1
gene_biotype: protein_coding
description:
  ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein; [S] COG1376 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_3248
symbol: EDZ48028.1
gene_biotype: protein_coding
description:
  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.


ensembl_gene_id: RBY4I_3255
symbol: EDZ48035.1
gene_biotype: protein_coding
description:
  ZIP zinc transporter family protein; [P] COG0428 Predicted divalent heavy-metal cations transporter.


ensembl_gene_id: RBY4I_3256
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: RBY4I_3263
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: RBY4I_3269
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: RBY4I_3278
symbol: EDZ48058.1
gene_biotype: protein_coding
description:
  Exopolysaccharide synthesis, ExoD; [R] COG3932 Uncharacterized ABC-type transport system, permease components.


ensembl_gene_id: RBY4I_3279
symbol: EDZ48059.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase family protein; [P] COG0748 Putative heme iron utilization protein.


ensembl_gene_id: RBY4I_3280
symbol: EDZ48060.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG4976 Predicted methyltransferase (contains TPR repeat); weak similarity to ubiquinone/menaquinone biosynthesis methyl transferase.


ensembl_gene_id: RBY4I_3288
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: RBY4I_329
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: RBY4I_3301
symbol: EDZ48081.1
gene_biotype: protein_coding
description:
  Peptidase M20; [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: RBY4I_3305
symbol: EDZ48085.1
gene_biotype: protein_coding
description:
  Fumarylacetoacetate hydrolase domain-containing protein 1; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).


ensembl_gene_id: RBY4I_3310
symbol: EDZ48090.1
gene_biotype: protein_coding
description:
  Inner-membrane translocator; [R] COG4603 ABC-type uncharacterized transport system, permease component; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_3312
symbol: EDZ48092.1
gene_biotype: protein_coding
description:
  Trimethylamine methyltransferase; [S] COG1385 Uncharacterized protein conserved in bacteria; Belongs to the trimethylamine methyltransferase family.


ensembl_gene_id: RBY4I_3313
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: RBY4I_3315
symbol: EDZ48095.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_3324
symbol: mltG
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.


ensembl_gene_id: RBY4I_3338
symbol: EDZ48118.1
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease protein; [V] COG0842 ABC-type multidrug transport system, permease component.


ensembl_gene_id: RBY4I_3343
symbol: EDZ48123.1
gene_biotype: protein_coding
description:
  RNA pseudouridine synthase family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: RBY4I_3345
symbol: idi
gene_biotype: protein_coding
description:
  Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).


ensembl_gene_id: RBY4I_3348
symbol: EDZ48128.1
gene_biotype: protein_coding
description:
  Cytochrome c biogenesis protein, transmembrane region; [OC] COG4232 Thiol:disulfide interchange protein.


ensembl_gene_id: RBY4I_3351
symbol: EDZ48131.1
gene_biotype: protein_coding
description:
  Phosphonate C-P lyase system protein PhnH; [P] COG3625 Uncharacterized enzyme of phosphonate metabolism.


ensembl_gene_id: RBY4I_3352
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: RBY4I_3354
symbol: EDZ48134.1
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic-acid; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: RBY4I_3357
symbol: EDZ48137.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase component.


ensembl_gene_id: RBY4I_3362
symbol: cobT_2
gene_biotype: protein_coding
description:
  Aerobic cobaltochelatase CobT subunit; [H] COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase).


ensembl_gene_id: RBY4I_3363
symbol: EDZ48143.1
gene_biotype: protein_coding
description:
  2Fe-2S iron-sulfur cluster binding domain protein; [R] COG3894 Uncharacterized metal-binding protein.


ensembl_gene_id: RBY4I_3367
symbol: phnJ
gene_biotype: protein_coding
description:
  Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.


ensembl_gene_id: RBY4I_337
symbol: RBY4I_337
gene_biotype: protein_coding
description:
  Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: RBY4I_3372
symbol: rpsM
gene_biotype: protein_coding
description:
  Ribosomal protein S13p/S18e; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: RBY4I_3377
symbol: EDZ48157.1
gene_biotype: protein_coding
description:
  Inositol-1-monophosphatase; [P] COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; Belongs to the inositol monophosphatase superfamily.


ensembl_gene_id: RBY4I_3380
symbol: sitB
gene_biotype: protein_coding
description:
  ABC Mn+2/Fe+2 transporter, ATPase subunit SitB; [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.


ensembl_gene_id: RBY4I_3382
symbol: EDZ48162.1
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase, zinc-containing; [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.


ensembl_gene_id: RBY4I_3385
symbol: EDZ48165.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.


ensembl_gene_id: RBY4I_3387
symbol: EDZ48167.1
gene_biotype: protein_coding
description:
  Ferric iron ABC transporter, periplasmic ferric iron-binding protein; [H] COG4143 ABC-type thiamine transport system, periplasmic component.


ensembl_gene_id: RBY4I_3388
symbol: EDZ48168.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold; esterase/lipase/thioesterase family active site.


ensembl_gene_id: RBY4I_339
symbol: sucC-2
gene_biotype: protein_coding
description:
  malate--CoA ligase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: RBY4I_3390
symbol: pip
gene_biotype: protein_coding
description:
  Proline iminopeptidase; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Belongs to the peptidase S33 family.


ensembl_gene_id: RBY4I_3396
symbol: EDZ48176.1
gene_biotype: protein_coding
description:
  Toxic anion resistance; [P] COG3853 Uncharacterized protein involved in tellurite resistance; Belongs to the TelA family.


ensembl_gene_id: RBY4I_34
symbol: RBY4I_34
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [G] COG0395 ABC-type sugar transport system, permease component; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_3403
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: RBY4I_3406
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: RBY4I_3407
symbol: EDZ48187.1
gene_biotype: protein_coding
description:
  O-succinylbenzoic acid-CoA ligase, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.


ensembl_gene_id: RBY4I_3408
symbol: EDZ48188.1
gene_biotype: protein_coding
description:
  Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family; [K] COG1414 Transcriptional regulator.


ensembl_gene_id: RBY4I_3409
symbol: anmK
gene_biotype: protein_coding
description:
  anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: RBY4I_3411
symbol: EDZ48191.1
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [P] COG1178 ABC-type Fe3+ transport system, permease component; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_3416
symbol: EDZ48196.1
gene_biotype: protein_coding
description:
  Aminotransferase, putative; [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.


ensembl_gene_id: RBY4I_3418
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: RBY4I_3419
symbol: EDZ48199.1
gene_biotype: protein_coding
description:
  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.


ensembl_gene_id: RBY4I_3420
symbol: EDZ48200.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [M] COG1664 Integral membrane protein CcmA involved in cell shape determination.


ensembl_gene_id: RBY4I_3421
symbol: EDZ48201.1
gene_biotype: protein_coding
description:
  Lytic transglycosylase, catalytic; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).


ensembl_gene_id: RBY4I_3422
symbol: phnW
gene_biotype: protein_coding
description:
  2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.


ensembl_gene_id: RBY4I_3424
symbol: clpA
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpA; [O] COG0464 ATPases of the AAA+ class; Belongs to the ClpA/ClpB family.


ensembl_gene_id: RBY4I_3432
symbol: EDZ48212.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family, putative; [K] COG2771 DNA-binding HTH domain-containing proteins.


ensembl_gene_id: RBY4I_3438
symbol: EDZ48218.1
gene_biotype: protein_coding
description:
  Nudix hydrolase; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: RBY4I_3439
symbol: EDZ48219.1
gene_biotype: protein_coding
description:
  Trap dicarboxylate transporter, dctp subunit, putative; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.


ensembl_gene_id: RBY4I_3440
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: RBY4I_3442
symbol: dusA
gene_biotype: protein_coding
description:
  tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.


ensembl_gene_id: RBY4I_3443
symbol: menC
gene_biotype: protein_coding
description:
  O-succinylbenzoic acid synthetase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).


ensembl_gene_id: RBY4I_3445
symbol: maf
gene_biotype: protein_coding
description:
  Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: RBY4I_345
symbol: RBY4I_345
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; [P] COG1178 ABC-type Fe3+ transport system, permease component.


ensembl_gene_id: RBY4I_3450
symbol: cdd_1
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: RBY4I_3454
symbol: ctaG
gene_biotype: protein_coding
description:
  Cytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.


ensembl_gene_id: RBY4I_3461
symbol: EDZ48241.1
gene_biotype: protein_coding
description:
  ABC Fe3+-siderophores transporter, periplasmic binding protein; [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.


ensembl_gene_id: RBY4I_3464
symbol: EDZ48244.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [TQ] COG3916 N-acyl-L-homoserine lactone synthetase; Belongs to the autoinducer synthase family.


ensembl_gene_id: RBY4I_3465
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.


ensembl_gene_id: RBY4I_3473
symbol: cobD_2
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: RBY4I_3474
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: RBY4I_3475
symbol: EDZ48255.1
gene_biotype: protein_coding
description:
  Putative Stage II sporulation protein E; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_3483
symbol: EDZ48263.1
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: RBY4I_3484
symbol: ctaQ
gene_biotype: protein_coding
description:
  Carboxypeptidase Taq; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.


ensembl_gene_id: RBY4I_3487
symbol: EDZ48267.1
gene_biotype: protein_coding
description:
  Putative endonuclease/exonuclease/phosphatase family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_3488
symbol: EDZ48268.1
gene_biotype: protein_coding
description:
  Antibiotic biosynthesis monooxygenase domain protein; [S] COG1359 Uncharacterized conserved protein.


ensembl_gene_id: RBY4I_3489
symbol: paaJ
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaJ subunit; [R] COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.


ensembl_gene_id: RBY4I_3490
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: RBY4I_3491
symbol: EDZ48271.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_3493
symbol: rplC
gene_biotype: protein_coding
description:
  Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: RBY4I_3500
symbol: EDZ48280.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.


ensembl_gene_id: RBY4I_3502
symbol: EDZ48282.1
gene_biotype: protein_coding
description:
  ABC transporter substrate binding protein; [Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.


ensembl_gene_id: RBY4I_3508
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.


ensembl_gene_id: RBY4I_3509
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: RBY4I_3510
symbol: nadE
gene_biotype: protein_coding
description:
  Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: RBY4I_3517
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.


ensembl_gene_id: RBY4I_3518
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: RBY4I_3519
symbol: EDZ48299.1
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.


ensembl_gene_id: RBY4I_352
symbol: hisA-2
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; [E] COG0107 Imidazoleglycerol-phosphate synthase.


ensembl_gene_id: RBY4I_3523
symbol: ttg2D
gene_biotype: protein_coding
description:
  Toluene tolerance protein Ttg2D; [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.


ensembl_gene_id: RBY4I_3524
symbol: EDZ48304.1
gene_biotype: protein_coding
description:
  Trap dicarboxylate transporter, dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.


ensembl_gene_id: RBY4I_3525
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone), D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: RBY4I_3526
symbol: EDZ48306.1
gene_biotype: protein_coding
description:
  Peptide/opine/nickel uptake family ABC transporter, permease protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: RBY4I_3528
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; [F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase.


ensembl_gene_id: RBY4I_353
symbol: flgG
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgG; [GEPR] COG0477 Permeases of the major facilitator superfamily; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: RBY4I_3531
symbol: phoB
gene_biotype: protein_coding
description:
  Phosphate regulon transcriptional regulatory protein PhoB; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: RBY4I_3537
symbol: EDZ48317.1
gene_biotype: protein_coding
description:
  Peptide/nickel/opine uptake family ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: RBY4I_3541
symbol: EDZ48321.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: RBY4I_3542
symbol: EDZ48322.1
gene_biotype: protein_coding
description:
  [E] COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RBY4I_3543
symbol: nosY
gene_biotype: protein_coding
description:
  Nitrous oxide maturation protein NosY; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component.


ensembl_gene_id: RBY4I_3544
symbol: EDZ48324.1
gene_biotype: protein_coding
description:
  Phospholipase D/Transphosphatidylase; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.


ensembl_gene_id: RBY4I_3551
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: RBY4I_3553
symbol: EDZ48333.1
gene_biotype: protein_coding
description:
  Glyoxylate reductase; [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: RBY4I_3563
symbol: gidB
gene_biotype: protein_coding
description:
  Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: RBY4I_3565
symbol: EDZ48344.1
gene_biotype: protein_coding
description:
  3-beta hydroxysteroid dehydrogenase/isomerase; [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases.


ensembl_gene_id: RBY4I_3568
symbol: hflB
gene_biotype: protein_coding
description:
  ATP-dependent metallopeptidase HflB subfamily; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: RBY4I_357
symbol: RBY4I_357
gene_biotype: protein_coding
description:
  ubiquinol-Cytochrome c reductase, iron-sulfur subunit; [S] COG1673 Uncharacterized protein conserved in archaea.


ensembl_gene_id: RBY4I_3571
symbol: EDZ48350.1
gene_biotype: protein_coding
description:
  UDP-galactose-lipid carrier transferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.


ensembl_gene_id: RBY4I_3572
symbol: psuG
gene_biotype: protein_coding
description:
  Indigoidine synthase A like protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.


ensembl_gene_id: RBY4I_3576
symbol: nuoG
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone), G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: RBY4I_3579
symbol: EDZ48358.1
gene_biotype: protein_coding
description:
  Inositol monophosphatase family protein; [P] COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase.


ensembl_gene_id: RBY4I_3580
symbol: pcaQ
gene_biotype: protein_coding
description:
  Pca operon transcription factor PcaQ; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: RBY4I_3584
symbol: EDZ48363.1
gene_biotype: protein_coding
description:
  2-hydroxychromene-2-carboxylate isomerase family protein; [Q] COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.


ensembl_gene_id: RBY4I_3585
symbol: EDZ48364.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase subunit iv. cytochrome c oxidase subunit iv; [S] COG5605 Predicted small integral membrane protein.


ensembl_gene_id: RBY4I_359
symbol: RBY4I_359
gene_biotype: protein_coding
description:
  Olfactory guanylyl cyclase GC-D, putative; [T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).


ensembl_gene_id: RBY4I_3592
symbol: EDZ48371.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [O] COG0625 Glutathione S-transferase; similarity to glutathione S-transferase; EC_number=2.5.1.18.


ensembl_gene_id: RBY4I_3594
symbol: EDZ48373.1
gene_biotype: protein_coding
description:
  TRAP transporter, DctM-like membrane protein; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.


ensembl_gene_id: RBY4I_3597
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: RBY4I_3598
symbol: EDZ48377.1
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase; [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.


ensembl_gene_id: RBY4I_36
symbol: RBY4I_36
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).


ensembl_gene_id: RBY4I_3604
symbol: ctpA
gene_biotype: protein_coding
description:
  Peptidase family S41; [R] COG3975 Predicted protease with the C-terminal PDZ domain; Belongs to the peptidase S41A family.


ensembl_gene_id: RBY4I_3609
symbol: ihfB
gene_biotype: protein_coding
description:
  Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: RBY4I_3611
symbol: EDZ48390.1
gene_biotype: protein_coding
description:
  Asparate kinase, monofunctional class; [E] COG0527 Aspartokinases; Belongs to the aspartokinase family.


ensembl_gene_id: RBY4I_3615
symbol: EDZ48394.1
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; [C] COG0644 Dehydrogenases (flavoproteins).


ensembl_gene_id: RBY4I_3617
symbol: EDZ48396.1
gene_biotype: protein_coding
description:
  Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: RBY4I_3619
symbol: EDZ48397.1
gene_biotype: protein_coding
description:
  FtsK/SpoIIIE family, putative; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.


ensembl_gene_id: RBY4I_3620
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: RBY4I_3623
symbol: EDZ48401.1
gene_biotype: protein_coding
description:
  ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: RBY4I_3628
symbol: pckA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.


ensembl_gene_id: RBY4I_3629
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: RBY4I_3634
symbol: EDZ48412.1
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, ATP-binding protein; [P] COG1135 ABC-type metal ion transport system, ATPase component.


ensembl_gene_id: RBY4I_3640
symbol: gacS
gene_biotype: protein_coding
description:
  Response regulator, sensor histidine kinase component GacS; [T] COG0642 Signal transduction histidine kinase.


ensembl_gene_id: RBY4I_3642
symbol: accB
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: RBY4I_3645
symbol: EDZ48423.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AsnC family; [K] COG1522 Transcriptional regulators; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_3646
symbol: EDZ48424.1
gene_biotype: protein_coding
description:
  Molybdopterin oxidoreductase Fe4S4 domain family; [C] COG5013 Nitrate reductase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: RBY4I_3647
symbol: EDZ48425.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain L subfamily; [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.


ensembl_gene_id: RBY4I_3648
symbol: EDZ48426.1
gene_biotype: protein_coding
description:
  Membrane protein involved in colicin uptake; [S] COG2268 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_3652
symbol: EDZ48429.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: RBY4I_3653
symbol: EDZ48430.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; uba/thif-type NAD/fad binding fold.


ensembl_gene_id: RBY4I_3657
symbol: EDZ48434.1
gene_biotype: protein_coding
description:
  Trap transporter, dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.


ensembl_gene_id: RBY4I_3658
symbol: clpP
gene_biotype: protein_coding
description:
  Clp protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: RBY4I_3659
symbol: deoA
gene_biotype: protein_coding
description:
  Thymidine phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.


ensembl_gene_id: RBY4I_366
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: RBY4I_3660
symbol: EDZ48437.1
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase subfamily IA, variant 3; [R] COG0637 Predicted phosphatase/phosphohexomutase.


ensembl_gene_id: RBY4I_3662
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: RBY4I_3664
symbol: EDZ48441.1
gene_biotype: protein_coding
description:
  Ornithine decarboxylase, putative; [E] COG0019 Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: RBY4I_3667
symbol: speE
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.


ensembl_gene_id: RBY4I_3668
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: RBY4I_367
symbol: hsdR_1
gene_biotype: protein_coding
description:
  HsdR; [V] COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.


ensembl_gene_id: RBY4I_3670
symbol: gidA
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: RBY4I_3672
symbol: phnG
gene_biotype: protein_coding
description:
  Phosphonate C-P lyase system protein PhnG; [P] COG3624 Uncharacterized enzyme of phosphonate metabolism.


ensembl_gene_id: RBY4I_368
symbol: cls
gene_biotype: protein_coding
description:
  Cardiolipin synthase; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.


ensembl_gene_id: RBY4I_3682
symbol: queC
gene_biotype: protein_coding
description:
  exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: RBY4I_3685
symbol: EDZ48462.1
gene_biotype: protein_coding
description:
  Peptidase U35, phage prohead HK97; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_3686
symbol: engB
gene_biotype: protein_coding
description:
  Hypothetical protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: RBY4I_3688
symbol: EDZ48465.1
gene_biotype: protein_coding
description:
  DNA-cytosine methyltransferase; [L] COG0270 Site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: RBY4I_3689
symbol: EDZ48466.1
gene_biotype: protein_coding
description:
  protein-L-isoaspartate(D-aspartate) O-methyltransferase; [O] COG2518 Protein-L-isoaspartate carboxylmethyltransferase.


ensembl_gene_id: RBY4I_3690
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: RBY4I_3694
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: RBY4I_3697
symbol: kpsE
gene_biotype: protein_coding
description:
  Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family; [M] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.


ensembl_gene_id: RBY4I_3698
symbol: EDZ48475.1
gene_biotype: protein_coding
description:
  Transcriptional Regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: RBY4I_3702
symbol: EDZ48479.1
gene_biotype: protein_coding
description:
  Bacterial extracellular solute-binding protein, putative; [G] COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: RBY4I_3706
symbol: EDZ48483.1
gene_biotype: protein_coding
description:
  Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: RBY4I_3710
symbol: ptsP
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: RBY4I_3712
symbol: EDZ48489.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.


ensembl_gene_id: RBY4I_3714
symbol: trmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: RBY4I_3720
symbol: speH
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: RBY4I_3725
symbol: pqqD
gene_biotype: protein_coding
description:
  Coenzyme PQQ synthesis protein D; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_3730
symbol: EDZ48507.1
gene_biotype: protein_coding
description:
  Permease, putative; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component.


ensembl_gene_id: RBY4I_3733
symbol: EDZ48510.1
gene_biotype: protein_coding
description:
  Peptidase S1C, Do; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.


ensembl_gene_id: RBY4I_3736
symbol: sodB
gene_biotype: protein_coding
description:
  Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: RBY4I_3738
symbol: EDZ48515.1
gene_biotype: protein_coding
description:
  Nitric oxide reductase large suBunit, cytochrome b; [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: RBY4I_3739
symbol: EDZ48516.1
gene_biotype: protein_coding
description:
  Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: RBY4I_3744
symbol: phnA_2
gene_biotype: protein_coding
description:
  Alkylphosphonate utilization operon protein PhnA; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism.


ensembl_gene_id: RBY4I_3746
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: RBY4I_3753
symbol: sthA
gene_biotype: protein_coding
description:
  Soluble pyridine nucleotide transhydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.


ensembl_gene_id: RBY4I_3762
symbol: arsC_1
gene_biotype: protein_coding
description:
  Arsenate reductase; [T] COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: RBY4I_3776
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: RBY4I_378
symbol: RBY4I_378
gene_biotype: protein_coding
description:
  OmpA domain protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.


ensembl_gene_id: RBY4I_3787
symbol: EDZ48564.1
gene_biotype: protein_coding
description:
  Isocitrate dehydrogenase, NADP-dependent; [C] COG2838 Monomeric isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.


ensembl_gene_id: RBY4I_3793
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.


ensembl_gene_id: RBY4I_3796
symbol: mraW
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: RBY4I_3801
symbol: EDZ48578.1
gene_biotype: protein_coding
description:
  Inner-membrane translocator; [E] COG4177 ABC-type branched-chain amino acid transport system, permease component; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_3805
symbol: EDZ48582.1
gene_biotype: protein_coding
description:
  Molybdopterin binding domain; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: RBY4I_3806
symbol: paaH
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaH subunit; [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism.


ensembl_gene_id: RBY4I_3807
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: RBY4I_3808
symbol: kbl
gene_biotype: protein_coding
description:
  2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.


ensembl_gene_id: RBY4I_3814
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: RBY4I_3815
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: RBY4I_3818
symbol: EDZ48595.1
gene_biotype: protein_coding
description:
  Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.


ensembl_gene_id: RBY4I_3819
symbol: ybeY
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: RBY4I_3821
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: RBY4I_3823
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: RBY4I_3828
symbol: potF
gene_biotype: protein_coding
description:
  Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.


ensembl_gene_id: RBY4I_3829
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase, putative; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: RBY4I_3832
symbol: EDZ48609.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: RBY4I_3837
symbol: EDZ48614.1
gene_biotype: protein_coding
description:
  Nucleotidyltransferase family protein; [M] COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains).


ensembl_gene_id: RBY4I_3839
symbol: cobD_1
gene_biotype: protein_coding
description:
  Threonine-phosphate decarboxylase; [E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.


ensembl_gene_id: RBY4I_384
symbol: RBY4I_384
gene_biotype: protein_coding
description:
  DNA protecting protein DprA; [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.


ensembl_gene_id: RBY4I_3841
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: RBY4I_3842
symbol: trx
gene_biotype: protein_coding
description:
  Thioredoxin; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.


ensembl_gene_id: RBY4I_3845
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: RBY4I_3848
symbol: ald
gene_biotype: protein_coding
description:
  Alanine dehydrogenase; [C] COG3288 NAD/NADP transhydrogenase alpha subunit; Belongs to the AlaDH/PNT family.


ensembl_gene_id: RBY4I_3851
symbol: EDZ48628.1
gene_biotype: protein_coding
description:
  mRNA 3'-end processing factor; [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.


ensembl_gene_id: RBY4I_3852
symbol: EDZ48629.1
gene_biotype: protein_coding
description:
  Peptidase S8 and S53, subtilisin, kexin, sedolisin, putative; [O] COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.


ensembl_gene_id: RBY4I_3853
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: RBY4I_3854
symbol: EDZ48631.1
gene_biotype: protein_coding
description:
  2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit domain protein; [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.


ensembl_gene_id: RBY4I_3856
symbol: recG
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: RBY4I_3858
symbol: EDZ48635.1
gene_biotype: protein_coding
description:
  Reductive dehalogenase subfamily, putative; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.


ensembl_gene_id: RBY4I_386
symbol: cobO
gene_biotype: protein_coding
description:
  cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.


ensembl_gene_id: RBY4I_3865
symbol: EDZ48642.1
gene_biotype: protein_coding
description:
  YaiI/YqxD family protein; [S] COG1671 Uncharacterized protein conserved in bacteria; Belongs to the UPF0178 family.


ensembl_gene_id: RBY4I_3866
symbol: EDZ48643.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.


ensembl_gene_id: RBY4I_3874
symbol: rsmI
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00096; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: RBY4I_3875
symbol: mrdB
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: RBY4I_3882
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: RBY4I_3883
symbol: EDZ48660.1
gene_biotype: protein_coding
description:
  Na+/H+ antiporter family domain protein; [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.


ensembl_gene_id: RBY4I_389
symbol: lpxA
gene_biotype: protein_coding
description:
  acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: RBY4I_3890
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: RBY4I_3892
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: RBY4I_3897
symbol: ddlB
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: RBY4I_3899
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: RBY4I_3901
symbol: ccmA
gene_biotype: protein_coding
description:
  Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.


ensembl_gene_id: RBY4I_3905
symbol: EDZ48682.1
gene_biotype: protein_coding
description:
  Renal dipeptidase family protein; [E] COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog.


ensembl_gene_id: RBY4I_3908
symbol: def_2
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: RBY4I_391
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: RBY4I_3910
symbol: EDZ48687.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain protein; [S] COG2128 Uncharacterized conserved protein.


ensembl_gene_id: RBY4I_3911
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: RBY4I_3917
symbol: phbA_1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: RBY4I_3919
symbol: EDZ48696.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate transport sensor protein; [T] COG0642 Signal transduction histidine kinase; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_392
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: RBY4I_3925
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: RBY4I_393
symbol: amn
gene_biotype: protein_coding
description:
  AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.


ensembl_gene_id: RBY4I_3931
symbol: rluD
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: RBY4I_3932
symbol: EDZ48709.1
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase E; [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: RBY4I_3938
symbol: EDZ48715.1
gene_biotype: protein_coding
description:
  Secretion protein HlyD; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: RBY4I_3946
symbol: plsY
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: RBY4I_3947
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: RBY4I_3948
symbol: sucB
gene_biotype: protein_coding
description:
  Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: RBY4I_3956
symbol: phnK
gene_biotype: protein_coding
description:
  Phosphonate C-P lyase system protein PhnK; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.


ensembl_gene_id: RBY4I_3958
symbol: EDZ48735.1
gene_biotype: protein_coding
description:
  ABC transporter, membrane spanning protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_3959
symbol: EDZ48736.1
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; PRC-barrel domain, putative.


ensembl_gene_id: RBY4I_396
symbol: cysQ
gene_biotype: protein_coding
description:
  3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.


ensembl_gene_id: RBY4I_3960
symbol: EDZ48737.1
gene_biotype: protein_coding
description:
  Nitrate/nitrite response regulator protein, putative; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: RBY4I_3962
symbol: EDZ48739.1
gene_biotype: protein_coding
description:
  Hydrolase, nudix family; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.


ensembl_gene_id: RBY4I_3963
symbol: ribD
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: RBY4I_3965
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: RBY4I_3971
symbol: EDZ48748.1
gene_biotype: protein_coding
description:
  Methionine import ATP-binding protein MetN; [G] COG3839 ABC-type sugar transport systems, ATPase components.


ensembl_gene_id: RBY4I_3972
symbol: cobM
gene_biotype: protein_coding
description:
  Precorrin-4 C11-methyltransferase; [H] COG2243 Precorrin-2 methylase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: RBY4I_3984
symbol: EDZ48761.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.


ensembl_gene_id: RBY4I_3987
symbol: lolD
gene_biotype: protein_coding
description:
  Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.


ensembl_gene_id: RBY4I_3993
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: RBY4I_3995
symbol: pheT
gene_biotype: protein_coding
description:
  [J] COG0072 Phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: RBY4I_4
symbol: RBY4I_4
gene_biotype: protein_coding
description:
  Proline dehydrogenase, alpha subunit; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.


ensembl_gene_id: RBY4I_4057
symbol: EDZ44872.1
gene_biotype: protein_coding
description:
  Trap dicarboxylate transporter, dctm subunit; [Q] COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.


ensembl_gene_id: RBY4I_4059
symbol: EDZ44874.1
gene_biotype: protein_coding
description:
  Na/Pi-cotransporter family protein; [P] COG1283 Na+/phosphate symporter; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_4061
symbol: EDZ44876.1
gene_biotype: protein_coding
description:
  Actinorhodin polyketide dimerase; [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.


ensembl_gene_id: RBY4I_4063
symbol: EDZ44878.1
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.


ensembl_gene_id: RBY4I_4065
symbol: ugpE
gene_biotype: protein_coding
description:
  SN-glycerol-3-phosphate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: RBY4I_4073
symbol: apbE
gene_biotype: protein_coding
description:
  Thiamin biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: RBY4I_4075
symbol: EDZ44890.1
gene_biotype: protein_coding
description:
  [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: RBY4I_4076
symbol: speB_3
gene_biotype: protein_coding
description:
  Agmatinase; [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.


ensembl_gene_id: RBY4I_4077
symbol: nqrB
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, B subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.


ensembl_gene_id: RBY4I_4078
symbol: EDZ44893.1
gene_biotype: protein_coding
description:
  Luciferase family protein; [C] COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: RBY4I_4079
symbol: EDZ44894.1
gene_biotype: protein_coding
description:
  Universal stress family protein, putative; [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.


ensembl_gene_id: RBY4I_4081
symbol: EDZ44896.1
gene_biotype: protein_coding
description:
  (2Fe-2S)-binding protein; [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.


ensembl_gene_id: RBY4I_4086
symbol: bkdA
gene_biotype: protein_coding
description:
  2-oxoisovalerate dehydrogenase, alpha subunit; [C] COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.


ensembl_gene_id: RBY4I_4087
symbol: EDZ44902.1
gene_biotype: protein_coding
description:
  Omega-amino acid--pyruvate aminotransferase; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RBY4I_409
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: RBY4I_4097
symbol: EDZ44912.1
gene_biotype: protein_coding
description:
  Ferric enterobactin transport ATP-binding protein; [R] COG4172 ABC-type uncharacterized transport system, duplicated ATPase component.


ensembl_gene_id: RBY4I_4098
symbol: EDZ44913.1
gene_biotype: protein_coding
description:
  Amidase, hydantoinase/carbamoylase family; [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.


ensembl_gene_id: RBY4I_4099
symbol: EDZ44914.1
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; [R] COG3845 ABC-type uncharacterized transport systems, ATPase components.


ensembl_gene_id: RBY4I_41
symbol: RBY4I_41
gene_biotype: protein_coding
description:
  Transcriptional Regulator, AraC family, putative; [K] COG2207 AraC-type DNA-binding domain-containing proteins.


ensembl_gene_id: RBY4I_4103
symbol: EDZ44918.1
gene_biotype: protein_coding
description:
  Oligopeptide ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_4104
symbol: EDZ44919.1
gene_biotype: protein_coding
description:
  NAD-dependent epimerase/dehydratase; [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases.


ensembl_gene_id: RBY4I_4107
symbol: EDZ44922.1
gene_biotype: protein_coding
description:
  Amidohydrolase family protein; [R] COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.


ensembl_gene_id: RBY4I_4111
symbol: EDZ44926.1
gene_biotype: protein_coding
description:
  Outer membrane receptor, TonB dependent; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.


ensembl_gene_id: RBY4I_4112
symbol: pntB_2
gene_biotype: protein_coding
description:
  NAD(P)+ transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: RBY4I_4118
symbol: nqrA
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, A subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.


ensembl_gene_id: RBY4I_4119
symbol: dgoA
gene_biotype: protein_coding
description:
  Mandelate racemase / muconate lactonizing enzyme family; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: RBY4I_4120
symbol: nqrF
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, F subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.


ensembl_gene_id: RBY4I_4121
symbol: EDZ44936.1
gene_biotype: protein_coding
description:
  MlrC C-terminal domain family protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.


ensembl_gene_id: RBY4I_4127
symbol: EDZ44942.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; [P] COG0725 ABC-type molybdate transport system, periplasmic component.


ensembl_gene_id: RBY4I_4129
symbol: EDZ44944.1
gene_biotype: protein_coding
description:
  Dipeptide ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_413
symbol: hup
gene_biotype: protein_coding
description:
  DNA-binding protein HU; [L] COG0776 Bacterial nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: RBY4I_4133
symbol: EDZ44948.1
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.


ensembl_gene_id: RBY4I_4136
symbol: ugpA
gene_biotype: protein_coding
description:
  SN-glycerol-3-phosphate ABC transporter, permease protein; [G] COG1175 ABC-type sugar transport systems, permease components.


ensembl_gene_id: RBY4I_4137
symbol: EDZ44952.1
gene_biotype: protein_coding
description:
  Oxidoreductase, 2-nitropropane dioxygenase family protein; [R] COG2070 Dioxygenases related to 2-nitropropane dioxygenase.


ensembl_gene_id: RBY4I_4138
symbol: EDZ44953.1
gene_biotype: protein_coding
description:
  Sulfopyruvate decarboxylase subunit alpha; [R] COG4032 Predicted thiamine-pyrophosphate-binding protein.


ensembl_gene_id: RBY4I_4140
symbol: EDZ44955.1
gene_biotype: protein_coding
description:
  Acetolactate synthase, catabolic, putative; [R] COG3960 Glyoxylate carboligase; Belongs to the TPP enzyme family.


ensembl_gene_id: RBY4I_4143
symbol: dctQ
gene_biotype: protein_coding
description:
  Trap-t family transporter, periplasmic ligand binding protein, dctq; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.


ensembl_gene_id: RBY4I_4153
symbol: EDZ44968.1
gene_biotype: protein_coding
description:
  Acetolactate synthase large subunit; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.


ensembl_gene_id: RBY4I_4158
symbol: repBf
gene_biotype: protein_coding
description:
  Plasmid partitioning protein RepBf1; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.


ensembl_gene_id: RBY4I_4165
symbol: EDZ44980.1
gene_biotype: protein_coding
description:
  Glutathione S-transferase, N-terminal domain; [O] COG0625 Glutathione S-transferase; Belongs to the GST superfamily.


ensembl_gene_id: RBY4I_4169
symbol: upgC
gene_biotype: protein_coding
description:
  SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.


ensembl_gene_id: RBY4I_4174
symbol: ugpB
gene_biotype: protein_coding
description:
  SN-glycerol-3-phophate ABC transporter, periplasmic SN-glycerol-3-phosphate-binding protein; [G] COG1653 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: RBY4I_4175
symbol: EDZ44990.1
gene_biotype: protein_coding
description:
  Alkanal monooxygenase alpha chain; [C] COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.


ensembl_gene_id: RBY4I_4184
symbol: EDZ44999.1
gene_biotype: protein_coding
description:
  Trap transporter, 4tm/12tm fusion protein; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.


ensembl_gene_id: RBY4I_4185
symbol: EDZ45000.1
gene_biotype: protein_coding
description:
  Cys/Met metabolism pyridoxal-phosphate-dependent enzyme; [E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.


ensembl_gene_id: RBY4I_4194
symbol: EDZ45009.1
gene_biotype: protein_coding
description:
  ABC transporter substrate binding protei; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.


ensembl_gene_id: RBY4I_4196
symbol: viuG
gene_biotype: protein_coding
description:
  Vibriobactin and enterobactin ABC transporter, permease protein; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: RBY4I_4197
symbol: nqrD
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, D subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family.


ensembl_gene_id: RBY4I_4199
symbol: EDZ45014.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TIGR00423; [HR] COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes.


ensembl_gene_id: RBY4I_420
symbol: RBY4I_420
gene_biotype: protein_coding
description:
  core-2/I-branching enzyme family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_4205
symbol: nqrE
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, E subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family.


ensembl_gene_id: RBY4I_4206
symbol: nqrC
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase, C subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.


ensembl_gene_id: RBY4I_4207
symbol: EDZ45022.1
gene_biotype: protein_coding
description:
  Sulfopyruvate decarboxylase subunit beta; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].


ensembl_gene_id: RBY4I_427
symbol: RBY4I_427
gene_biotype: protein_coding
description:
  Ferric cations import ATP-binding protein FbpC 2; [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_428
symbol: paaF
gene_biotype: protein_coding
description:
  phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: RBY4I_429
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: RBY4I_430
symbol: RBY4I_430
gene_biotype: protein_coding
description:
  CaiB/BaiF family protein; [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.


ensembl_gene_id: RBY4I_438
symbol: RBY4I_438
gene_biotype: protein_coding
description:
  Sigma-24; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: RBY4I_439
symbol: lpxB
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: RBY4I_441
symbol: RBY4I_441
gene_biotype: protein_coding
description:
  Oxidoreductase, short-chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RBY4I_448
symbol: RBY4I_448
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase; [T] COG4943 Predicted signal transduction protein containing sensor and EAL domains.


ensembl_gene_id: RBY4I_45
symbol: RBY4I_45
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); NAD.


ensembl_gene_id: RBY4I_452
symbol: speC
gene_biotype: protein_coding
description:
  Orn/DAP/Arg decarboxylases family 2; [E] COG0019 Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: RBY4I_459
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: RBY4I_462
symbol: ccoN
gene_biotype: protein_coding
description:
  [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: RBY4I_464
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: RBY4I_465
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: RBY4I_468
symbol: RBY4I_468
gene_biotype: protein_coding
description:
  cdp-diacylglycerOl--serine o-phosphatidyltransferase; [I] COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: RBY4I_471
symbol: RBY4I_471
gene_biotype: protein_coding
description:
  Glutamate synthase family protein; [F] COG0516 IMP dehydrogenase/GMP reductase; Belongs to the glutamate synthase family.


ensembl_gene_id: RBY4I_477
symbol: RBY4I_477
gene_biotype: protein_coding
description:
  Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: RBY4I_48
symbol: RBY4I_48
gene_biotype: protein_coding
description:
  Betaine aldehyde dehydrogenase; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RBY4I_480
symbol: RBY4I_480
gene_biotype: protein_coding
description:
  His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; [P] COG1135 ABC-type metal ion transport system, ATPase component.


ensembl_gene_id: RBY4I_481
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: RBY4I_482
symbol: RBY4I_482
gene_biotype: protein_coding
description:
  Basic membrane lipoprotein; [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.


ensembl_gene_id: RBY4I_490
symbol: etf
gene_biotype: protein_coding
description:
  Electrotransfer ubiquinone oxidoreductase protein; Accepts electrons from ETF and reduces ubiquinone.


ensembl_gene_id: RBY4I_493
symbol: RBY4I_493
gene_biotype: protein_coding
description:
  Globin; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the globin family.


ensembl_gene_id: RBY4I_497
symbol: mviN
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: RBY4I_50
symbol: RBY4I_50
gene_biotype: protein_coding
description:
  DctQ; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.


ensembl_gene_id: RBY4I_503
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: RBY4I_506
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: RBY4I_507
symbol: RBY4I_507
gene_biotype: protein_coding
description:
  Outer membrane protein, OmpA/MotB family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_510
symbol: rpsK
gene_biotype: protein_coding
description:
  Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: RBY4I_511
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: RBY4I_512
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: RBY4I_517
symbol: mtnP
gene_biotype: protein_coding
description:
  Methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.


ensembl_gene_id: RBY4I_518
symbol: RBY4I_518
gene_biotype: protein_coding
description:
  AMP-binding enzyme domain protein; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.


ensembl_gene_id: RBY4I_520
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: RBY4I_523
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: RBY4I_525
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: RBY4I_529
symbol: RBY4I_529
gene_biotype: protein_coding
description:
  [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_531
symbol: nosF
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein NosF; [G] COG1129 ABC-type sugar transport system, ATPase component.


ensembl_gene_id: RBY4I_533
symbol: ribB
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: RBY4I_538
symbol: tauB
gene_biotype: protein_coding
description:
  Taurine import ATP-binding protein TauB; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.


ensembl_gene_id: RBY4I_541
symbol: RBY4I_541
gene_biotype: protein_coding
description:
  Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.


ensembl_gene_id: RBY4I_542
symbol: RBY4I_542
gene_biotype: protein_coding
description:
  ABC transporter, periplasmic substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: RBY4I_546
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: RBY4I_549
symbol: RBY4I_549
gene_biotype: protein_coding
description:
  XorII very-short-patch-repair endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.


ensembl_gene_id: RBY4I_553
symbol: fdhA
gene_biotype: protein_coding
description:
  Formate dehydrogenase, alpha subunit; [C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: RBY4I_554
symbol: RBY4I_554
gene_biotype: protein_coding
description:
  Heat shock protein, Hsp20 family; [J] COG0051 Ribosomal protein S10; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: RBY4I_558
symbol: RBY4I_558
gene_biotype: protein_coding
description:
  Hsp20; [O] COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: RBY4I_568
symbol: RBY4I_568
gene_biotype: protein_coding
description:
  Glycine betaine/proline ABC transporter, permease protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.


ensembl_gene_id: RBY4I_569
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: RBY4I_577
symbol: folC
gene_biotype: protein_coding
description:
  Bifunctional folylpolyglutamate synthase/dihydrofolate syntase; [M] COG0770 UDP-N-acetylmuramyl pentapeptide synthase; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: RBY4I_579
symbol: RBY4I_579
gene_biotype: protein_coding
description:
  Ham1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: RBY4I_580
symbol: hpcE
gene_biotype: protein_coding
description:
  2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxy; [R] COG3970 Fumarylacetoacetate (FAA) hydrolase family protein.


ensembl_gene_id: RBY4I_582
symbol: RBY4I_582
gene_biotype: protein_coding
description:
  [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: RBY4I_584
symbol: phaZ
gene_biotype: protein_coding
description:
  Polyhydroxyalkanoate depolymerase, intracellular; [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase.


ensembl_gene_id: RBY4I_593
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: RBY4I_594
symbol: RBY4I_594
gene_biotype: protein_coding
description:
  Membrane protein involved in aromatic hydrocarbon degradation; [I] COG2067 Long-chain fatty acid transport protein.


ensembl_gene_id: RBY4I_596
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase chain k; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: RBY4I_597
symbol: grxC
gene_biotype: protein_coding
description:
  Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: RBY4I_599
symbol: argG
gene_biotype: protein_coding
description:
  [E] COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: RBY4I_60
symbol: RBY4I_60
gene_biotype: protein_coding
description:
  [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_613
symbol: cse3
gene_biotype: protein_coding
description:
  CRISPR-associated protein, Cse3 family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_617
symbol: fnrL
gene_biotype: protein_coding
description:
  [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: RBY4I_618
symbol: RBY4I_618
gene_biotype: protein_coding
description:
  Tautomerase enzyme superfamily; [R] COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog.


ensembl_gene_id: RBY4I_619
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: RBY4I_62
symbol: eutC
gene_biotype: protein_coding
description:
  Ectoine utilization protein EutC; [E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.


ensembl_gene_id: RBY4I_620
symbol: RBY4I_620
gene_biotype: protein_coding
description:
  Exopolysaccharide biosynthesis domain protein; [D] COG0489 ATPases involved in chromosome partitioning.


ensembl_gene_id: RBY4I_621
symbol: mraZ
gene_biotype: protein_coding
description:
  Protein MraZ; [S] COG2001 Uncharacterized protein conserved in bacteria; Belongs to the MraZ family.


ensembl_gene_id: RBY4I_623
symbol: RBY4I_623
gene_biotype: protein_coding
description:
  Phosphonate uptake transporter; [E] COG0765 ABC-type amino acid transport system, permease component.


ensembl_gene_id: RBY4I_624
symbol: RBY4I_624
gene_biotype: protein_coding
description:
  Hypothetical protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.


ensembl_gene_id: RBY4I_629
symbol: sufB
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.


ensembl_gene_id: RBY4I_630
symbol: RBY4I_630
gene_biotype: protein_coding
description:
  Bacilysin biosynthesis oxidoreductase BacC; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: RBY4I_632
symbol: RBY4I_632
gene_biotype: protein_coding
description:
  Hypothetical protein; [S] COG5449 Uncharacterized conserved protein; phage conserved hypothetical protein BR0599.


ensembl_gene_id: RBY4I_633
symbol: bamD
gene_biotype: protein_coding
description:
  DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: RBY4I_64
symbol: RBY4I_64
gene_biotype: protein_coding
description:
  ABC transporter, inner membrane subunit; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.


ensembl_gene_id: RBY4I_640
symbol: RBY4I_640
gene_biotype: protein_coding
description:
  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; [V] COG3023 Negative regulator of beta-lactamase expression.


ensembl_gene_id: RBY4I_643
symbol: RBY4I_643
gene_biotype: protein_coding
description:
  Peptidase U62, modulator of DNA gyrase; [R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs.


ensembl_gene_id: RBY4I_644
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: RBY4I_645
symbol: rrmJ
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: RBY4I_647
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: RBY4I_649
symbol: tauA
gene_biotype: protein_coding
description:
  Taurine ABC transporter, periplasmic taurine-binding protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.


ensembl_gene_id: RBY4I_651
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: RBY4I_653
symbol: folK
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.


ensembl_gene_id: RBY4I_656
symbol: RBY4I_656
gene_biotype: protein_coding
description:
  Cobalamin 5-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate.


ensembl_gene_id: RBY4I_657
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: RBY4I_659
symbol: RBY4I_659
gene_biotype: protein_coding
description:
  Peptidase, M16 family; [R] COG0612 Predicted Zn-dependent peptidases; overlaps another CDS with the same product name.


ensembl_gene_id: RBY4I_661
symbol: RBY4I_661
gene_biotype: protein_coding
description:
  Peptide/opine/nickel uptake family ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: RBY4I_667
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: RBY4I_669
symbol: RBY4I_669
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [K] COG1678 Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: RBY4I_677
symbol: recA
gene_biotype: protein_coding
description:
  Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: RBY4I_681
symbol: msrB
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase; [O] COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase.


ensembl_gene_id: RBY4I_682
symbol: RBY4I_682
gene_biotype: protein_coding
description:
  Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; PRC-barrel.


ensembl_gene_id: RBY4I_685
symbol: cvpA
gene_biotype: protein_coding
description:
  CvpA family protein; [R] COG1286 Uncharacterized membrane protein, required for colicin V production.


ensembl_gene_id: RBY4I_686
symbol: gpmI
gene_biotype: protein_coding
description:
  2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: RBY4I_690
symbol: queE
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: RBY4I_692
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH dehydrogenase i, n subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: RBY4I_698
symbol: dksA
gene_biotype: protein_coding
description:
  RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: RBY4I_705
symbol: nodL
gene_biotype: protein_coding
description:
  Maltose O-acetyltransferase protein; [R] COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.


ensembl_gene_id: RBY4I_706
symbol: RBY4I_706
gene_biotype: protein_coding
description:
  [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.


ensembl_gene_id: RBY4I_707
symbol: narL
gene_biotype: protein_coding
description:
  [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.


ensembl_gene_id: RBY4I_709
symbol: RBY4I_709
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: RBY4I_71
symbol: RBY4I_71
gene_biotype: protein_coding
description:
  Transketolase, pyridine binding domain protein; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: RBY4I_711
symbol: ppnk
gene_biotype: protein_coding
description:
  Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: RBY4I_714
symbol: cpoB
gene_biotype: protein_coding
description:
  Hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: RBY4I_717
symbol: RBY4I_717
gene_biotype: protein_coding
description:
  Vanillate O-demethylase oxidoreductase; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.


ensembl_gene_id: RBY4I_721
symbol: RBY4I_721
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase (NAD) family protein; [C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RBY4I_722
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: RBY4I_724
symbol: RBY4I_724
gene_biotype: protein_coding
description:
  Oxidoreductase, short-chain dehydrogenase/reductase family; [R] COG0300 Short-chain dehydrogenases of various substrate specificities.


ensembl_gene_id: RBY4I_725
symbol: phaD
gene_biotype: protein_coding
description:
  pH adaption potassium efflux system protein; [C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).


ensembl_gene_id: RBY4I_726
symbol: ptsN
gene_biotype: protein_coding
description:
  Nitrogen regulatory IIA protein; [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type).


ensembl_gene_id: RBY4I_727
symbol: RBY4I_727
gene_biotype: protein_coding
description:
  Coproporphyrinogen III oxidase, anaerobic 2; [H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases.


ensembl_gene_id: RBY4I_746
symbol: uppS
gene_biotype: protein_coding
description:
  Undecaprenyl pyrophosphate synthetase 1; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: RBY4I_749
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: RBY4I_752
symbol: pgpA
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).


ensembl_gene_id: RBY4I_754
symbol: RBY4I_754
gene_biotype: protein_coding
description:
  Transglycosylase, Slt family; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).


ensembl_gene_id: RBY4I_755
symbol: yejF
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: RBY4I_756
symbol: RBY4I_756
gene_biotype: protein_coding
description:
  Proline dehydrogenase family; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: RBY4I_757
symbol: RBY4I_757
gene_biotype: protein_coding
description:
  Tail tape measure protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_759
symbol: ftsQ
gene_biotype: protein_coding
description:
  Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.


ensembl_gene_id: RBY4I_771
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: RBY4I_774
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase subunit C, putative; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: RBY4I_776
symbol: RBY4I_776
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [S] COG3490 Uncharacterized protein conserved in bacteria.


ensembl_gene_id: RBY4I_777
symbol: RBY4I_777
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.


ensembl_gene_id: RBY4I_778
symbol: RBY4I_778
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: RBY4I_781
symbol: ddsA
gene_biotype: protein_coding
description:
  Decaprenyl diphosphate synthase; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: RBY4I_788
symbol: RBY4I_788
gene_biotype: protein_coding
description:
  TRAP transporter, 4TM/12TM fusion protein; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.


ensembl_gene_id: RBY4I_789
symbol: RBY4I_789
gene_biotype: protein_coding
description:
  Glycine cleavage T protein; [R] COG0354 Predicted aminomethyltransferase related to GcvT; Belongs to the GcvT family.


ensembl_gene_id: RBY4I_790
symbol: moaA_2
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: RBY4I_792
symbol: RBY4I_792
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase in MprA 5'region; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: RBY4I_793
symbol: paaB
gene_biotype: protein_coding
description:
  Phenylacetate degradation probable enoyl-CoA hydratase paaB; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.


ensembl_gene_id: RBY4I_794
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: RBY4I_796
symbol: RBY4I_796
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding domain protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.


ensembl_gene_id: RBY4I_802
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: RBY4I_804
symbol: kynU
gene_biotype: protein_coding
description:
  Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: RBY4I_807
symbol: RBY4I_807
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.


ensembl_gene_id: RBY4I_809
symbol: fpr
gene_biotype: protein_coding
description:
  ferredoxin--NADP reductase; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.


ensembl_gene_id: RBY4I_815
symbol: RBY4I_815
gene_biotype: protein_coding
description:
  Maf-like protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: RBY4I_816
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: RBY4I_817
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: RBY4I_820
symbol: RBY4I_820
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; [R] COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I.


ensembl_gene_id: RBY4I_821
symbol: soxB
gene_biotype: protein_coding
description:
  Sulfur oxidation B protein; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: RBY4I_823
symbol: RBY4I_823
gene_biotype: protein_coding
description:
  Crispr-associated family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_824
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: RBY4I_826
symbol: RBY4I_826
gene_biotype: protein_coding
description:
  Inner-membrane translocator; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.


ensembl_gene_id: RBY4I_830
symbol: livG
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.


ensembl_gene_id: RBY4I_835
symbol: RBY4I_835
gene_biotype: protein_coding
description:
  Hypothetical protein; [S] COG0401 Uncharacterized homolog of Blt101; Uncharacterized protein family.


ensembl_gene_id: RBY4I_844
symbol: RBY4I_844
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.


ensembl_gene_id: RBY4I_845
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N', putative; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: RBY4I_847
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: RBY4I_853
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: RBY4I_857
symbol: gpsA
gene_biotype: protein_coding
description:
  [C] COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: RBY4I_86
symbol: RBY4I_86
gene_biotype: protein_coding
description:
  Hypothetical protein; [R] COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif; radical SAM.


ensembl_gene_id: RBY4I_862
symbol: RBY4I_862
gene_biotype: protein_coding
description:
  [E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: RBY4I_865
symbol: ctaA
gene_biotype: protein_coding
description:
  Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.


ensembl_gene_id: RBY4I_868
symbol: hslU
gene_biotype: protein_coding
description:
  Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: RBY4I_869
symbol: RBY4I_869
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, permease protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.


ensembl_gene_id: RBY4I_87
symbol: RBY4I_87
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; [G] COG1879 ABC-type sugar transport system, periplasmic component.


ensembl_gene_id: RBY4I_870
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS protein; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought [...]


ensembl_gene_id: RBY4I_871
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: RBY4I_872
symbol: algI
gene_biotype: protein_coding
description:
  Alginate O-acetylation protein AlgI; [M] COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: RBY4I_878
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: RBY4I_879
symbol: RBY4I_879
gene_biotype: protein_coding
description:
  Putative phosphonate metabolism protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.


ensembl_gene_id: RBY4I_881
symbol: tolB
gene_biotype: protein_coding
description:
  Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: RBY4I_882
symbol: galE
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: RBY4I_887
symbol: RBY4I_887
gene_biotype: protein_coding
description:
  Prenyltransferase family protein; [H] COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family.


ensembl_gene_id: RBY4I_896
symbol: RBY4I_896
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.


ensembl_gene_id: RBY4I_898
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: RBY4I_900
symbol: RBY4I_900
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.


ensembl_gene_id: RBY4I_902
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: RBY4I_905
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: RBY4I_915
symbol: RBY4I_915
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110kDa subunit, putative; [R] COG0457 FOG: TPR repeat.


ensembl_gene_id: RBY4I_916
symbol: RBY4I_916
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; [R] COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.


ensembl_gene_id: RBY4I_924
symbol: RBY4I_924
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; [R] COG4221 Short-chain alcohol dehydrogenase of unknown specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: RBY4I_926
symbol: RBY4I_926
gene_biotype: protein_coding
description:
  ATP synthase beta subunit/transription termination factor rho; [S] COG1565 Uncharacterized conserved protein.


ensembl_gene_id: RBY4I_928
symbol: queG
gene_biotype: protein_coding
description:
  Iron-sulfur cluster-binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: RBY4I_93
symbol: RBY4I_93
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.


ensembl_gene_id: RBY4I_936
symbol: phbB
gene_biotype: protein_coding
description:
  acetoacetyl-CoA reductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).


ensembl_gene_id: RBY4I_939
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: RBY4I_944
symbol: RBY4I_944
gene_biotype: protein_coding
description:
  ABC Fe3+-siderophores transporter, inner membrane subunit; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: RBY4I_946
symbol: RBY4I_946
gene_biotype: protein_coding
description:
  Polyprenyl synthetase; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: RBY4I_951
symbol: lnt_1
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: RBY4I_958
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: RBY4I_963
symbol: RBY4I_963
gene_biotype: protein_coding
description:
  Peptidase, S54 (rhomboid) family; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).


ensembl_gene_id: RBY4I_969
symbol: RBY4I_969
gene_biotype: protein_coding
description:
  [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: RBY4I_97
symbol: RBY4I_97
gene_biotype: protein_coding
description:
  Muconate cycloisomerase 1; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.


ensembl_gene_id: RBY4I_970
symbol: mucD
gene_biotype: protein_coding
description:
  S1C (protease Do) subfamily peptidase MucD; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.


ensembl_gene_id: RBY4I_974
symbol: ispZ
gene_biotype: protein_coding
description:
  Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: RBY4I_98
symbol: RBY4I_98
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family, putative; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.


ensembl_gene_id: RBY4I_980
symbol: RBY4I_980
gene_biotype: protein_coding
description:
  Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: RBY4I_983
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: RBY4I_989
symbol: atpI
gene_biotype: protein_coding
description:
  ATP synthase F0, subunit I; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.


ensembl_gene_id: RBY4I_990
symbol: RBY4I_990
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


